carray 1.3.7 → 1.5.4
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- checksums.yaml +4 -4
- data/.yardopts +32 -0
- data/LICENSE +22 -0
- data/NEWS.md +78 -0
- data/README.md +43 -30
- data/Rakefile +31 -0
- data/TODO.md +17 -0
- data/carray.gemspec +21 -31
- data/{ca_iter_block.c → ext/ca_iter_block.c} +16 -18
- data/{ca_iter_dimension.c → ext/ca_iter_dimension.c} +20 -21
- data/{ca_iter_window.c → ext/ca_iter_window.c} +12 -14
- data/{ca_obj_array.c → ext/ca_obj_array.c} +451 -176
- data/{ca_obj_bitarray.c → ext/ca_obj_bitarray.c} +18 -23
- data/{ca_obj_bitfield.c → ext/ca_obj_bitfield.c} +12 -16
- data/{ca_obj_block.c → ext/ca_obj_block.c} +47 -54
- data/{ca_obj_fake.c → ext/ca_obj_fake.c} +10 -12
- data/{ca_obj_farray.c → ext/ca_obj_farray.c} +21 -23
- data/{ca_obj_field.c → ext/ca_obj_field.c} +30 -32
- data/{ca_obj_grid.c → ext/ca_obj_grid.c} +32 -33
- data/{ca_obj_mapping.c → ext/ca_obj_mapping.c} +11 -13
- data/{ca_obj_object.c → ext/ca_obj_object.c} +40 -42
- data/{ca_obj_reduce.c → ext/ca_obj_reduce.c} +3 -5
- data/{ca_obj_refer.c → ext/ca_obj_refer.c} +44 -48
- data/{ca_obj_repeat.c → ext/ca_obj_repeat.c} +45 -47
- data/{ca_obj_select.c → ext/ca_obj_select.c} +4 -6
- data/{ca_obj_shift.c → ext/ca_obj_shift.c} +26 -28
- data/{ca_obj_transpose.c → ext/ca_obj_transpose.c} +26 -28
- data/{ca_obj_unbound_repeat.c → ext/ca_obj_unbound_repeat.c} +106 -160
- data/{ca_obj_window.c → ext/ca_obj_window.c} +33 -35
- data/{carray.h → ext/carray.h} +90 -59
- data/{carray_access.c → ext/carray_access.c} +244 -109
- data/{carray_attribute.c → ext/carray_attribute.c} +161 -207
- data/{carray_call_cfunc.c → ext/carray_call_cfunc.c} +1 -3
- data/{carray_cast.c → ext/carray_cast.c} +350 -149
- data/{carray_cast_func.rb → ext/carray_cast_func.rb} +1 -2
- data/{carray_class.c → ext/carray_class.c} +28 -36
- data/{carray_conversion.c → ext/carray_conversion.c} +65 -70
- data/{carray_copy.c → ext/carray_copy.c} +34 -50
- data/{carray_core.c → ext/carray_core.c} +75 -62
- data/ext/carray_data_type.c +66 -0
- data/{carray_element.c → ext/carray_element.c} +34 -53
- data/{carray_generate.c → ext/carray_generate.c} +137 -50
- data/{carray_iterator.c → ext/carray_iterator.c} +53 -53
- data/{carray_loop.c → ext/carray_loop.c} +77 -106
- data/{carray_mask.c → ext/carray_mask.c} +105 -114
- data/{carray_math.rb → ext/carray_math.rb} +47 -31
- data/ext/{mathfunc/carray_mathfunc.c → carray_mathfunc.c} +1 -3
- data/{carray_numeric.c → ext/carray_numeric.c} +43 -46
- data/{carray_operator.c → ext/carray_operator.c} +72 -36
- data/{carray_order.c → ext/carray_order.c} +232 -217
- data/{carray_sort_addr.c → ext/carray_sort_addr.c} +14 -21
- data/{carray_stat.c → ext/carray_stat.c} +6 -8
- data/{carray_stat_proc.rb → ext/carray_stat_proc.rb} +25 -27
- data/{carray_test.c → ext/carray_test.c} +59 -51
- data/{carray_undef.c → ext/carray_undef.c} +1 -11
- data/{carray_utils.c → ext/carray_utils.c} +12 -4
- data/{extconf.rb → ext/extconf.rb} +6 -7
- data/{mkmath.rb → ext/mkmath.rb} +14 -4
- data/{ruby_carray.c → ext/ruby_carray.c} +20 -8
- data/{ruby_ccomplex.c → ext/ruby_ccomplex.c} +2 -4
- data/{ruby_float_func.c → ext/ruby_float_func.c} +1 -3
- data/ext/version.h +16 -0
- data/{version.rb → ext/version.rb} +0 -0
- data/lib/carray.rb +52 -10
- data/lib/carray/{base/autoload.rb → autoload.rb} +48 -8
- data/lib/carray/autoload/autoload_base.rb +1 -5
- data/lib/carray/autoload/autoload_gem_cairo.rb +9 -0
- data/lib/carray/autoload/autoload_gem_ffi.rb +9 -0
- data/lib/carray/autoload/autoload_gem_gnuplot.rb +2 -0
- data/lib/carray/autoload/autoload_gem_io_csv.rb +14 -0
- data/lib/carray/autoload/autoload_gem_io_pg.rb +6 -0
- data/lib/carray/autoload/autoload_gem_io_sqlite3.rb +12 -0
- data/lib/carray/autoload/autoload_gem_narray.rb +10 -0
- data/lib/carray/autoload/autoload_gem_numo_narray.rb +15 -0
- data/lib/carray/autoload/autoload_gem_opencv.rb +16 -0
- data/lib/carray/autoload/autoload_gem_random.rb +8 -0
- data/lib/carray/autoload/autoload_gem_rmagick.rb +23 -0
- data/lib/carray/autoload/{autoload_graphics_zimg.rb → autoload_gem_zimg.rb} +0 -0
- data/lib/carray/basic.rb +191 -0
- data/lib/carray/broadcast.rb +101 -0
- data/lib/carray/compose.rb +315 -0
- data/lib/carray/construct.rb +484 -0
- data/lib/carray/convert.rb +115 -0
- data/lib/carray/info.rb +1 -3
- data/lib/carray/{base/inspect.rb → inspect.rb} +9 -11
- data/lib/carray/io/imagemagick.rb +2 -4
- data/lib/carray/{base/iterator.rb → iterator.rb} +6 -6
- data/lib/carray/mask.rb +102 -0
- data/lib/carray/{base/math.rb → math.rb} +21 -53
- data/lib/carray/math/histogram.rb +8 -10
- data/lib/carray/math/recurrence.rb +1 -3
- data/lib/carray/mkmf.rb +9 -3
- data/lib/carray/object/ca_obj_iterator.rb +1 -3
- data/lib/carray/object/ca_obj_link.rb +1 -3
- data/lib/carray/object/ca_obj_pack.rb +9 -11
- data/lib/carray/obsolete.rb +256 -0
- data/lib/carray/ordering.rb +181 -0
- data/lib/carray/{base/serialize.rb → serialize.rb} +50 -66
- data/lib/carray/string.rb +188 -0
- data/lib/carray/{base/struct.rb → struct.rb} +19 -21
- data/lib/carray/{io/table.rb → table.rb} +1 -10
- data/lib/carray/testing.rb +51 -0
- data/lib/carray/time.rb +76 -0
- data/lib/carray/transform.rb +109 -0
- data/misc/Methods.ja.md +182 -0
- data/{NOTE → misc/NOTE} +16 -38
- data/spec/Classes/CABitfield_spec.rb +58 -0
- data/spec/Classes/CABlockIterator_spec.rb +114 -0
- data/spec/Classes/CABlock_spec.rb +205 -0
- data/spec/Classes/CAField_spec.rb +39 -0
- data/spec/Classes/CAGrid_spec.rb +75 -0
- data/spec/Classes/CAMap_spec.rb +0 -0
- data/{test/test_CAMapping.rb → spec/Classes/CAMapping_spec.rb} +35 -36
- data/spec/Classes/CAObject_attribute_spec.rb +33 -0
- data/spec/Classes/CAObject_spec.rb +33 -0
- data/spec/Classes/CARefer_spec.rb +93 -0
- data/spec/Classes/CARepeat_spec.rb +65 -0
- data/spec/Classes/CASelect_spec.rb +22 -0
- data/spec/Classes/CAShift_spec.rb +16 -0
- data/spec/Classes/CAStruct_spec.rb +71 -0
- data/{test/test_CATranspose.rb → spec/Classes/CATranspose_spec.rb} +20 -21
- data/spec/Classes/CAUnboudRepeat_spec.rb +102 -0
- data/spec/Classes/CAWindow_spec.rb +54 -0
- data/spec/Classes/CAWrap_spec.rb +8 -0
- data/{test/test_CArray.rb → spec/Classes/CArray_spec.rb} +48 -92
- data/spec/Classes/CScalar_spec.rb +55 -0
- data/spec/Features/feature_130_spec.rb +19 -0
- data/spec/Features/feature_attributes_spec.rb +280 -0
- data/spec/Features/feature_boolean_spec.rb +98 -0
- data/spec/Features/feature_broadcast.rb +116 -0
- data/spec/Features/feature_cast_function.rb +19 -0
- data/spec/Features/feature_cast_spec.rb +33 -0
- data/spec/Features/feature_class_spec.rb +84 -0
- data/spec/Features/feature_complex_spec.rb +42 -0
- data/{test/test_composite.rb → spec/Features/feature_composite_spec.rb} +17 -18
- data/spec/Features/feature_convert_spec.rb +46 -0
- data/spec/Features/feature_copy_spec.rb +123 -0
- data/spec/Features/feature_creation_spec.rb +84 -0
- data/spec/Features/feature_element_spec.rb +144 -0
- data/spec/Features/feature_extream_spec.rb +54 -0
- data/spec/Features/feature_generate_spec.rb +74 -0
- data/spec/Features/feature_index_spec.rb +69 -0
- data/spec/Features/feature_mask_spec.rb +580 -0
- data/spec/Features/feature_math_spec.rb +97 -0
- data/spec/Features/feature_order_spec.rb +146 -0
- data/spec/Features/feature_ref_store_spec.rb +209 -0
- data/spec/Features/feature_serialization_spec.rb +125 -0
- data/spec/Features/feature_stat_spec.rb +397 -0
- data/spec/Features/feature_virtual_spec.rb +48 -0
- data/spec/Features/method_eq_spec.rb +81 -0
- data/spec/Features/method_is_nan_spec.rb +12 -0
- data/spec/Features/method_map_spec.rb +54 -0
- data/spec/Features/method_max_with.rb +20 -0
- data/spec/Features/method_min_with.rb +19 -0
- data/spec/Features/method_ne_spec.rb +18 -0
- data/spec/Features/method_project_spec.rb +188 -0
- data/spec/Features/method_ref_spec.rb +27 -0
- data/spec/Features/method_round_spec.rb +11 -0
- data/spec/Features/method_s_linspace_spec.rb +48 -0
- data/spec/Features/method_s_span_spec.rb +14 -0
- data/spec/Features/method_seq_spec.rb +47 -0
- data/spec/Features/method_sort_with.rb +43 -0
- data/spec/Features/method_sorted_with.rb +29 -0
- data/spec/Features/method_span_spec.rb +42 -0
- data/spec/Features/method_wrap_readonly_spec.rb +43 -0
- data/{test → spec/UnitTest}/test_CAVirtual.rb +0 -0
- data/spec/spec_all.rb +0 -1
- data/utils/convert_test.rb +73 -0
- data/utils/{extract_rdoc.rb → extract_yard.rb} +7 -12
- data/{devel → utils}/guess_shape.rb +0 -0
- data/utils/{diff_method.rb → monkey_patch_methods.rb} +17 -7
- metadata +171 -298
- data/COPYING +0 -56
- data/GPL +0 -340
- data/Gemfile +0 -8
- data/Gemfile.lock +0 -33
- data/LEGAL +0 -50
- data/TODO +0 -5
- data/carray_random.c +0 -531
- data/ext/calculus/carray_calculus.c +0 -931
- data/ext/calculus/carray_interp.c +0 -358
- data/ext/calculus/extconf.rb +0 -12
- data/ext/calculus/lib/autoload/autoload_math_calculus.rb +0 -2
- data/ext/calculus/lib/math/calculus.rb +0 -119
- data/ext/calculus/lib/math/interp/adapter_interp1d.rb +0 -31
- data/ext/fortio/extconf.rb +0 -3
- data/ext/fortio/lib/carray/autoload/autoload_fortran_format.rb +0 -5
- data/ext/fortio/lib/carray/io/fortran_format.rb +0 -43
- data/ext/fortio/lib/fortio.rb +0 -3
- data/ext/fortio/lib/fortio/fortran_format.rb +0 -605
- data/ext/fortio/lib/fortio/fortran_format.tab.rb +0 -536
- data/ext/fortio/lib/fortio/fortran_format.y +0 -215
- data/ext/fortio/lib/fortio/fortran_namelist.rb +0 -151
- data/ext/fortio/lib/fortio/fortran_namelist.tab.rb +0 -470
- data/ext/fortio/lib/fortio/fortran_namelist.y +0 -213
- data/ext/fortio/lib/fortio/fortran_sequential.rb +0 -345
- data/ext/fortio/ruby_fortio.c +0 -182
- data/ext/fortio/test/test_H.rb +0 -5
- data/ext/fortio/test/test_T.rb +0 -7
- data/ext/fortio/test/test_fortran_format.rb +0 -86
- data/ext/fortio/test/test_namelist.rb +0 -25
- data/ext/fortio/test/test_namelist_write.rb +0 -10
- data/ext/fortio/test/test_sequential.rb +0 -13
- data/ext/fortio/test/test_sequential2.rb +0 -13
- data/ext/fortio/work/test.rb +0 -10
- data/ext/fortio/work/test_e.rb +0 -19
- data/ext/fortio/work/test_ep.rb +0 -10
- data/ext/fortio/work/test_parse.rb +0 -12
- data/ext/mathfunc/extconf.rb +0 -18
- data/ext/mathfunc/lib/autoload/autoload_math_mathfunc.rb +0 -1
- data/ext/mathfunc/lib/math/mathfunc.rb +0 -15
- data/ext/mathfunc/test/test_hypot.rb +0 -5
- data/ext/mathfunc/test/test_j0.rb +0 -22
- data/ext/mathfunc/test/test_jn.rb +0 -8
- data/ext/mathfunc/test/test_sph.rb +0 -9
- data/ext/narray/README +0 -22
- data/ext/narray/ca_wrap_narray.c +0 -500
- data/ext/narray/carray_narray.c +0 -21
- data/ext/narray/extconf.rb +0 -57
- data/ext/narray/lib/autoload/autoload_math_narray.rb +0 -1
- data/ext/narray/lib/autoload/autoload_math_narray_miss.rb +0 -11
- data/ext/narray/lib/math/narray.rb +0 -17
- data/ext/narray/lib/math/narray_miss.rb +0 -45
- data/lib/carray/autoload/autoload_graphics_gnuplot.rb +0 -2
- data/lib/carray/autoload/autoload_io_csv.rb +0 -14
- data/lib/carray/autoload/autoload_io_numo.rb +0 -9
- data/lib/carray/autoload/autoload_io_pg.rb +0 -6
- data/lib/carray/autoload/autoload_io_sqlite3.rb +0 -12
- data/lib/carray/autoload/autoload_io_table.rb +0 -1
- data/lib/carray/autoload/autoload_math_interp.rb +0 -4
- data/lib/carray/base/basic.rb +0 -1090
- data/lib/carray/base/obsolete.rb +0 -131
- data/lib/carray/graphics/gnuplot.rb +0 -2141
- data/lib/carray/graphics/zimg.rb +0 -296
- data/lib/carray/io/csv.rb +0 -572
- data/lib/carray/io/numo.rb +0 -52
- data/lib/carray/io/pg.rb +0 -101
- data/lib/carray/io/sqlite3.rb +0 -215
- data/lib/carray/math/interp.rb +0 -57
- data/lib/carray/math/interp/adapter_gsl_spline.rb +0 -47
- data/mt19937ar.c +0 -182
- data/mt19937ar.h +0 -86
- data/rdoc_main.rb +0 -27
- data/rdoc_math.rb +0 -5
- data/rdoc_stat.rb +0 -31
- data/spec/CABlockIterator/CABlockIterator_spec.rb +0 -113
- data/spec/CArray/bug/store_spec.rb +0 -27
- data/spec/CArray/index/repeat_spec.rb +0 -10
- data/spec/CArray/method/eq_spec.rb +0 -80
- data/spec/CArray/method/is_nan_spec.rb +0 -12
- data/spec/CArray/method/ne_spec.rb +0 -18
- data/spec/CArray/method/round_spec.rb +0 -11
- data/spec/CArray/object/_attribute_spec.rb +0 -32
- data/spec/CArray/object/s_new_spec.rb +0 -31
- data/spec/CArray/serialize/Serialization_spec.rb +0 -89
- data/test/test_130.rb +0 -23
- data/test/test_ALL.rb +0 -51
- data/test/test_CABitfield.rb +0 -59
- data/test/test_CABlock.rb +0 -208
- data/test/test_CAField.rb +0 -40
- data/test/test_CAGrid.rb +0 -76
- data/test/test_CAMmap.rb +0 -11
- data/test/test_CARefer.rb +0 -94
- data/test/test_CARepeat.rb +0 -66
- data/test/test_CASelect.rb +0 -23
- data/test/test_CAShift.rb +0 -17
- data/test/test_CAWindow.rb +0 -55
- data/test/test_CAWrap.rb +0 -9
- data/test/test_CComplex.rb +0 -83
- data/test/test_CScalar.rb +0 -91
- data/test/test_attribute.rb +0 -281
- data/test/test_block_iterator.rb +0 -17
- data/test/test_boolean.rb +0 -99
- data/test/test_cast.rb +0 -33
- data/test/test_class.rb +0 -85
- data/test/test_complex.rb +0 -43
- data/test/test_convert.rb +0 -79
- data/test/test_copy.rb +0 -141
- data/test/test_creation.rb +0 -85
- data/test/test_element.rb +0 -146
- data/test/test_extream.rb +0 -55
- data/test/test_generate.rb +0 -75
- data/test/test_index.rb +0 -71
- data/test/test_mask.rb +0 -578
- data/test/test_math.rb +0 -98
- data/test/test_narray.rb +0 -64
- data/test/test_order.rb +0 -147
- data/test/test_random.rb +0 -15
- data/test/test_ref_store.rb +0 -211
- data/test/test_stat.rb +0 -414
- data/test/test_struct.rb +0 -72
- data/test/test_virtual.rb +0 -49
- data/utils/create_rdoc.sh +0 -9
- data/utils/make_tgz.sh +0 -3
- data/version.h +0 -18
data/lib/carray/io/numo.rb
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require "numo/narray"
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class CArray
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CARRAY2NUMO = {
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CA_INT8 => Numo::Int8,
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CA_UINT8 => Numo::UInt8,
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CA_INT16 => Numo::Int16,
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CA_UINT16 => Numo::UInt16,
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CA_INT32 => Numo::Int32,
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CA_UINT32 => Numo::UInt32,
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CA_INT64 => Numo::Int64,
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CA_UINT64 => Numo::UInt64,
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CA_INT64 => Numo::Int64,
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CA_UINT64 => Numo::UInt64,
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CA_FLOAT32 => Numo::SFloat,
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CA_FLOAT64 => Numo::DFloat,
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}
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def to_numo
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narray = CARRAY2NUMO[data_type].new(*dim)
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narray.store_binary(to_s)
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return narray
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end
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end
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module Numo
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class NArray
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NUMO2CARRAY = {
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Numo::Int8 => CA_INT8,
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Numo::UInt8 => CA_UINT8,
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Numo::Int16 => CA_INT16 ,
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Numo::UInt16 => CA_UINT16 ,
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Numo::Int32 => CA_INT32 ,
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Numo::UInt32 => CA_UINT32,
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Numo::Int64 => CA_INT64 ,
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Numo::UInt64 => CA_UINT64,
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Numo::Int64 => CA_INT64 ,
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Numo::UInt64 => CA_UINT64,
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Numo::SFloat => CA_FLOAT32,
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Numo::DFloat => CA_FLOAT64,
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}
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def to_ca
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return CArray.new(NUMO2CARRAY[self.class], self.shape).load_binary(to_binary)
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end
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end
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end
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data/lib/carray/io/pg.rb
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require "pg"
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require "carray"
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class CArray
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def self.load_pg (expr, *args)
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case expr
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when Hash
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opts = expr
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sql, *vars = *args
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db = PG.connect(opts)
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begin
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result = db.async_exec(sql, *vars)
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names = result.fields
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table = result.values
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rescue Interrupt
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db.cancel
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raise
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ensure
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db.finish
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end
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when PG::Result
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result = expr
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names = result.fields
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table = result.values
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when PG::Connection
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db = expr
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sql, *vars = *args
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begin
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result = db.async_exec(sql, *vars)
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names = result.fields
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table = result.values
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rescue Interrupt
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db.cancel
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raise
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end
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else
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|
-
raise "invalid 1st arg"
|
39
|
-
end
|
40
|
-
table = table.to_ca
|
41
|
-
table.instance_exec {
|
42
|
-
@result = result
|
43
|
-
@names = names
|
44
|
-
}
|
45
|
-
class << table
|
46
|
-
attr_reader :names, :result
|
47
|
-
def column (name)
|
48
|
-
if self.size == 0
|
49
|
-
if name.is_a?(Integer)
|
50
|
-
return CA_OBJECT([])
|
51
|
-
elsif @names
|
52
|
-
if i = @names.index(name.to_s)
|
53
|
-
return CA_OBJECT([])
|
54
|
-
end
|
55
|
-
end
|
56
|
-
return nil
|
57
|
-
else
|
58
|
-
if name.is_a?(Integer)
|
59
|
-
return self[false, name]
|
60
|
-
elsif @names
|
61
|
-
if i = @names.index(name.to_s)
|
62
|
-
return self[false, i]
|
63
|
-
end
|
64
|
-
end
|
65
|
-
return nil
|
66
|
-
end
|
67
|
-
end
|
68
|
-
end
|
69
|
-
return table
|
70
|
-
end
|
71
|
-
|
72
|
-
def unescape_bytea (type, subdim = nil)
|
73
|
-
bytes = CArray.sizeof(type)
|
74
|
-
max_bytesize = self.convert{|v| v ? PG::Connection.unescape_bytea(v).bytesize : 0}.max
|
75
|
-
unless subdim
|
76
|
-
subdim = [max_bytesize/bytes]
|
77
|
-
end
|
78
|
-
out = CArray.new(type, dim + subdim)
|
79
|
-
needed_bytes = out.elements/self.elements*bytes
|
80
|
-
ref = out.refer(:fixlen, dim, :bytes=>needed_bytes)
|
81
|
-
if needed_bytes == max_bytesize
|
82
|
-
ref.load_binary self.convert {|v| PG::Connection.unescape_bytea(v) }.join
|
83
|
-
else
|
84
|
-
self.each_addr do |addr|
|
85
|
-
if self[addr]
|
86
|
-
text = PG::Connection.unescape_bytea(self[addr])
|
87
|
-
ref[[addr]].load_binary PG::Connection.unescape_bytea(self[addr])
|
88
|
-
else
|
89
|
-
out[addr,false] = UNDEF
|
90
|
-
end
|
91
|
-
end
|
92
|
-
end
|
93
|
-
return out
|
94
|
-
end
|
95
|
-
|
96
|
-
def escape_bytea (db)
|
97
|
-
return db.escape_bytea(self.to_s)
|
98
|
-
end
|
99
|
-
|
100
|
-
end
|
101
|
-
|
data/lib/carray/io/sqlite3.rb
DELETED
@@ -1,215 +0,0 @@
|
|
1
|
-
require "carray"
|
2
|
-
require "sqlite3"
|
3
|
-
require "carray/io/table"
|
4
|
-
|
5
|
-
class CArray
|
6
|
-
|
7
|
-
def self.load_sqlite3 (expr, *args)
|
8
|
-
case expr
|
9
|
-
when String
|
10
|
-
file = expr
|
11
|
-
sql, *vars = *args
|
12
|
-
db = SQLite3::Database.new(file)
|
13
|
-
names, *table = db.execute2(sql, *vars)
|
14
|
-
db.close
|
15
|
-
when SQLite3::Database
|
16
|
-
db = expr
|
17
|
-
sql, *vars = *args
|
18
|
-
names, *table = db.execute2(sql, *vars)
|
19
|
-
when SQLite3::Statement
|
20
|
-
stmt = expr
|
21
|
-
vars = args
|
22
|
-
names = stmt.columns
|
23
|
-
table = stmt.execute!(*vars)
|
24
|
-
else
|
25
|
-
raise "invalid 1st arg"
|
26
|
-
end
|
27
|
-
table = table.to_ca
|
28
|
-
table.extend(CA::TableMethods)
|
29
|
-
table.column_names = names
|
30
|
-
return table
|
31
|
-
end
|
32
|
-
|
33
|
-
def to_sqlite3 (database: nil, table:, datatype: "numeric", schema: nil, transaction: true)
|
34
|
-
unless rank <= 2
|
35
|
-
raise "to_sqlite3 is valid only for 2-dim array (table)"
|
36
|
-
end
|
37
|
-
case database
|
38
|
-
when SQLite3::Database
|
39
|
-
when String
|
40
|
-
if File.exist? database
|
41
|
-
database = SQLite3::Database.open(database)
|
42
|
-
else
|
43
|
-
database = SQLite3::Database.new(database)
|
44
|
-
end
|
45
|
-
else
|
46
|
-
database = SQLite3::Database.new ":memory:"
|
47
|
-
end
|
48
|
-
if respond_to?(:column_names) and column_names
|
49
|
-
vars = column_names
|
50
|
-
else
|
51
|
-
if rank == 1
|
52
|
-
vars = ["c0"]
|
53
|
-
else
|
54
|
-
vars = CArray.object(dim1).seq.map{|s| "c#{s}" }
|
55
|
-
end
|
56
|
-
end
|
57
|
-
|
58
|
-
if schema
|
59
|
-
database.execute "create table if not exists #{table} (" + schema + ")"
|
60
|
-
else
|
61
|
-
database.execute "create table if not exists #{table} (" + vars.map{|s| s + " " + datatype }.join(",") + ")"
|
62
|
-
end
|
63
|
-
|
64
|
-
insert = database.prepare %{ insert or replace into #{table} values (#{(["?"]*vars.size).join(",")}) }
|
65
|
-
database.transaction if transaction
|
66
|
-
if rank == 1
|
67
|
-
dim0.times do |i|
|
68
|
-
insert.execute [self[i]]
|
69
|
-
end
|
70
|
-
else
|
71
|
-
begin
|
72
|
-
dim0.times do |i|
|
73
|
-
begin
|
74
|
-
insert.execute self[i,nil].to_a
|
75
|
-
rescue
|
76
|
-
puts self[i,nil].to_a
|
77
|
-
raise $!
|
78
|
-
end
|
79
|
-
end
|
80
|
-
end
|
81
|
-
end
|
82
|
-
database.commit if transaction
|
83
|
-
insert.close
|
84
|
-
return database
|
85
|
-
end
|
86
|
-
|
87
|
-
def unblob (type, subdim = nil)
|
88
|
-
bytes = CArray.sizeof(type)
|
89
|
-
elem = nil
|
90
|
-
self.each do |e|
|
91
|
-
unless e.nil?
|
92
|
-
elem = e
|
93
|
-
break
|
94
|
-
end
|
95
|
-
end
|
96
|
-
if elem == nil and subdim == nil
|
97
|
-
raise "all element is nil, please specify dimension."
|
98
|
-
end
|
99
|
-
unless subdim
|
100
|
-
subdim = [elem.bytesize/bytes]
|
101
|
-
end
|
102
|
-
out = CArray.new(type, dim + subdim)
|
103
|
-
needed_bytes = out.elements/self.elements*bytes
|
104
|
-
ref = out.refer(:fixlen, dim, :bytes=>needed_bytes)
|
105
|
-
if elem and needed_bytes != elem.bytesize
|
106
|
-
self.each_addr do |addr|
|
107
|
-
if self[addr].nil?
|
108
|
-
ref[[addr]] = UNDEF
|
109
|
-
else
|
110
|
-
ref[[addr]].load_binary self[addr]
|
111
|
-
end
|
112
|
-
end
|
113
|
-
elsif self.any_equal?(nil)
|
114
|
-
copy = self.to_ca
|
115
|
-
sel = self.eq(nil)
|
116
|
-
copy[sel] = "\0" * needed_bytes
|
117
|
-
ref.load_binary copy.join
|
118
|
-
ref[sel] = UNDEF
|
119
|
-
else
|
120
|
-
ref.load_binary self.join
|
121
|
-
end
|
122
|
-
return out
|
123
|
-
end
|
124
|
-
|
125
|
-
end
|
126
|
-
|
127
|
-
module SQLite3
|
128
|
-
|
129
|
-
class Database
|
130
|
-
|
131
|
-
def create_table (table, data, names = nil)
|
132
|
-
ncols = data.rank == 1 ? 1 : data.dim1
|
133
|
-
if names
|
134
|
-
varlist = names.map{|s| s.to_s }
|
135
|
-
elsif data.respond_to?(:names)
|
136
|
-
varlist = data.names
|
137
|
-
else
|
138
|
-
varlist = []
|
139
|
-
ncols.times do |i|
|
140
|
-
varlist << "col#{i}"
|
141
|
-
end
|
142
|
-
end
|
143
|
-
execute %{create table #{table} (#{varlist.join(",")})}
|
144
|
-
insert(table, data)
|
145
|
-
end
|
146
|
-
|
147
|
-
def insert (table, data)
|
148
|
-
table_info = execute %{
|
149
|
-
pragma table_info(#{table})
|
150
|
-
}
|
151
|
-
if table_info.empty?
|
152
|
-
raise "#{table} is empty table"
|
153
|
-
end
|
154
|
-
qstns = (["?"]*table_info.size).join(",")
|
155
|
-
self.transaction {
|
156
|
-
stmt = prepare %{
|
157
|
-
insert or replace into #{table} values (#{qstns})
|
158
|
-
}
|
159
|
-
data.to_a.each do |row|
|
160
|
-
stmt.execute *row
|
161
|
-
end
|
162
|
-
stmt.close
|
163
|
-
}
|
164
|
-
end
|
165
|
-
|
166
|
-
def schema (table = nil)
|
167
|
-
if table
|
168
|
-
return get_first_value %{
|
169
|
-
select sql from sqlite_master where type in ('table', 'view', 'index') and name = "#{table}"
|
170
|
-
}
|
171
|
-
else
|
172
|
-
return execute(%{
|
173
|
-
select sql from sqlite_master where type in ('table', 'view', 'index')
|
174
|
-
}).map{|v| v[0]}
|
175
|
-
end
|
176
|
-
end
|
177
|
-
|
178
|
-
# insert
|
179
|
-
def import_table (dbfile, src_table, dst_table = nil)
|
180
|
-
dst_table ||= src_table
|
181
|
-
db = "db#{Thread.current.object_id}"
|
182
|
-
execute %{
|
183
|
-
attach database "#{dbfile}" as #{db};
|
184
|
-
}
|
185
|
-
sql = get_first_value %{
|
186
|
-
select sql from #{db}.sqlite_master where type = 'table' and name = "#{src_table}"
|
187
|
-
}
|
188
|
-
sql.sub!(/create\s+table\s(.+?)\s/i, "create table if not exists #{dst_table}")
|
189
|
-
execute sql
|
190
|
-
execute %{
|
191
|
-
insert into #{dst_table} select * from #{db}.#{src_table};
|
192
|
-
}
|
193
|
-
indeces = execute %{
|
194
|
-
select sql from #{db}.sqlite_master where type = 'index' and tbl_name = "#{src_table}"
|
195
|
-
}
|
196
|
-
indeces.each do |row|
|
197
|
-
sql = row[0]
|
198
|
-
unless sql
|
199
|
-
break
|
200
|
-
end
|
201
|
-
sql.sub!(/create\s+index/i, "create index if not exists")
|
202
|
-
sql.sub!(/on\s+#{src_table}\(/i, "on #{dst_table}(")
|
203
|
-
execute sql
|
204
|
-
end
|
205
|
-
execute %{
|
206
|
-
detach database #{db};
|
207
|
-
}
|
208
|
-
end
|
209
|
-
|
210
|
-
end
|
211
|
-
|
212
|
-
end
|
213
|
-
|
214
|
-
|
215
|
-
|
data/lib/carray/math/interp.rb
DELETED
@@ -1,57 +0,0 @@
|
|
1
|
-
# ----------------------------------------------------------------------------
|
2
|
-
#
|
3
|
-
# carray/math/interp.rb
|
4
|
-
#
|
5
|
-
# This file is part of Ruby/CArray extension library.
|
6
|
-
# You can redistribute it and/or modify it under the terms of
|
7
|
-
# the Ruby Licence.
|
8
|
-
#
|
9
|
-
# Copyright (C) 2005 Hiroki Motoyoshi
|
10
|
-
#
|
11
|
-
# ----------------------------------------------------------------------------
|
12
|
-
|
13
|
-
require "carray"
|
14
|
-
|
15
|
-
class CA::Interp
|
16
|
-
|
17
|
-
ADAPTERS = {}
|
18
|
-
|
19
|
-
def initialize (type, scales, value, options={})
|
20
|
-
adapter_class = ADAPTERS[type]
|
21
|
-
if adapter_class
|
22
|
-
@type = type
|
23
|
-
@adapter = adapter_class.new(scales, value, options)
|
24
|
-
else
|
25
|
-
raise RuntimeError, "unknown interp adapter <#{type}>"
|
26
|
-
end
|
27
|
-
end
|
28
|
-
|
29
|
-
def [] (*args)
|
30
|
-
return @adapter.evaluate(*args)
|
31
|
-
end
|
32
|
-
|
33
|
-
def method_missing (id, *args)
|
34
|
-
return @adapter.send(id, *args)
|
35
|
-
end
|
36
|
-
|
37
|
-
end
|
38
|
-
|
39
|
-
class CA::Interp::Adapter # :nodoc:
|
40
|
-
|
41
|
-
def self.install_adapter (name)
|
42
|
-
CA::Interp::ADAPTERS[name] = self
|
43
|
-
end
|
44
|
-
|
45
|
-
end
|
46
|
-
|
47
|
-
def CA.interp (*argv)
|
48
|
-
return CA::Interp.new(*argv)
|
49
|
-
end
|
50
|
-
|
51
|
-
CA.each_load_path("carray/math/interp") {
|
52
|
-
Dir["adapter_*.rb"].each do |basename|
|
53
|
-
if basename =~ /\A(adapter_.+)\.rb\Z/
|
54
|
-
require "carray/math/interp/" + $1
|
55
|
-
end
|
56
|
-
end
|
57
|
-
}
|
@@ -1,47 +0,0 @@
|
|
1
|
-
#
|
2
|
-
#
|
3
|
-
#
|
4
|
-
|
5
|
-
#
|
6
|
-
# :type => type
|
7
|
-
#
|
8
|
-
# * "linear"
|
9
|
-
# * "polynomial"
|
10
|
-
# * "cspline"
|
11
|
-
# * "cspline_periodic"
|
12
|
-
# * "akima"
|
13
|
-
# * "akima_periodic"
|
14
|
-
#
|
15
|
-
|
16
|
-
require "carray/math/interp"
|
17
|
-
begin
|
18
|
-
require "gsl"
|
19
|
-
rescue LoadError
|
20
|
-
end
|
21
|
-
|
22
|
-
class CA::Interp::GSLSpline < CA::Interp::Adapter
|
23
|
-
|
24
|
-
install_adapter "gsl:spline"
|
25
|
-
|
26
|
-
def initialize (scales, value, options={})
|
27
|
-
@y = value
|
28
|
-
@x = scales
|
29
|
-
type = options[:type] || "linear"
|
30
|
-
CArray.attach(@x, @y) {
|
31
|
-
@interp = GSL::Spline.alloc(type, @x.na, @y.na)
|
32
|
-
}
|
33
|
-
end
|
34
|
-
|
35
|
-
def evaluate (x0)
|
36
|
-
case x0
|
37
|
-
when CArray
|
38
|
-
return x0.attach { @interp.eval(x0.na).ca }
|
39
|
-
else
|
40
|
-
return @interp.eval(x0)
|
41
|
-
end
|
42
|
-
end
|
43
|
-
|
44
|
-
alias grid evaluate
|
45
|
-
|
46
|
-
end
|
47
|
-
|