canql 5.8.0 → 5.9.0

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data/CHANGELOG.md

@@ -1,5 +1,12 @@
 ## [Unreleased]
-*no unreleased changes*
+
+## 5.9.0 / 2023-01-17
+* Added 'other' option to anomaly screening status filter (#90)
+
+## 5.8.1 / 2022-12-08
+* Drop support for Ruby 2.6
+* Support Ruby 3.1, Rails 7.0
+* Replace Public Health England naming with NHS Digital
 
 ## 5.8.0 / 2022-07-18
 * Added new 'badger_search' registration action type filter (#86)

data/LICENSE.txt

@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2015 Public Health England
+Copyright (c) 2015-2022 NHS Digital
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

data/README.md

@@ -1,13 +1,13 @@
-# CANQL [![Build Status](https://github.com/publichealthengland/canql/workflows/Test/badge.svg)](https://github.com/publichealthengland/canql/actions?query=workflow%3Atest) [![Gem Version](https://badge.fury.io/rb/canql.svg)](https://rubygems.org/gems/canql)
+# CANQL [![Build Status](https://github.com/NHSDigital/canql/workflows/Test/badge.svg)](https://github.com/NHSDigital/canql/actions?query=workflow%3Atest) [![Gem Version](https://badge.fury.io/rb/canql.svg)](https://rubygems.org/gems/canql)
 
-Congenital Anomaly Natural Query Language (CANQL) is a [Treetop](http://treetop.rubyforge.org/)-driven Domain Specific Language (DSL) used by the Public Health England (PHE) National Congenital Anomaly and Rare Disease Registration Service (NCARDRS) to identify cohorts of cases.
+Congenital Anomaly Natural Query Language (CANQL) is a [Treetop](http://treetop.rubyforge.org/)-driven Domain Specific Language (DSL) used by the NHS Digital (NHS-D) National Congenital Anomaly and Rare Disease Registration Service (NCARDRS) to identify cohorts of cases.
 
 Used for analysis, research and day-to-day operations to empower non-technical users to write sophisticated human readable queries without the need to know or understand the underlying datastore and/or schema.
 
 CANQL is decoupled from the specifics of the NCARDRS systems by producing an intermediate representation, known as Disease Intermediate Representation (DIR). This allows us to:
 
 1. implement separate DIR adapters for different datastores (e.g. SQL and NoSQL datastores);
-2. utilize the same DIR adapters for different but over-lapping DSLs, including Tumour Natural Query Language ([TNQL](https://github.com/PublicHealthEngland/tnql)) ; and
+2. utilize the same DIR adapters for different but over-lapping DSLs, including Tumour Natural Query Language ([TNQL](https://github.com/NHSDigital/tnql)) ; and
 3. pass DIR queries to non-ruby backend systems using any simple format like JSON.
 
 ## Installation
@@ -62,7 +62,7 @@ To install this gem onto your local machine, run `bundle exec rake install`. To
 
 ## Contributing
 
-1. Fork it ( https://github.com/PublicHealthEngland/canql/fork )
+1. Fork it ( https://github.com/NHSDigital/canql/fork )
 2. Create your feature branch (`git checkout -b my-new-feature`)
 3. Commit your changes (`git commit -am 'Add some feature'`)
 4. Push to the branch (`git push origin my-new-feature`)

data/lib/canql/grammars/anomaly.treetop

@@ -23,7 +23,7 @@ module Canql
        'ics' / 'ineligible unbooked' / 'inb' / 'early detected' / 'ied' /
        'screen declined' / 'sd' / 'ineligible early loss' / 'iefl' / 'ineligible top' /
        'itop' / 'missed screen' / 'ms' / 'excluded' / 'exc' / 'detected' /
-       'undetected' / 'ineligible' / 'pending data') word_break
+       'undetected' / 'ineligible' / 'pending data' / 'other') word_break
     end
 
     rule anomalies_keyword

data/lib/canql/version.rb

@@ -2,5 +2,5 @@
 
 # This stores the current version of the Canql gem
 module Canql
-  VERSION = '5.8.0'
+  VERSION = '5.9.0'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: canql
 version: !ruby/object:Gem::Version
-  version: 5.8.0
+  version: 5.9.0
 platform: ruby
 authors:
-- PHE NDR Development Team
-autorequire: 
+- NHSD NDRS Development Team
+autorequire:
 bindir: exe
 cert_chain: []
-date: 2022-07-18 00:00:00.000000000 Z
+date: 2023-02-17 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: chronic
@@ -50,20 +50,20 @@ dependencies:
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '4.1'
+        version: '6.0'
     - - "<"
       - !ruby/object:Gem::Version
-        version: '7'
+        version: '7.1'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '4.1'
+        version: '6.0'
     - - "<"
       - !ruby/object:Gem::Version
-        version: '7'
+        version: '7.1'
 - !ruby/object:Gem::Dependency
   name: treetop
   requirement: !ruby/object:Gem::Requirement
@@ -140,28 +140,34 @@ dependencies:
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 5.0.0
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: '0'
+        version: 5.0.0
 - !ruby/object:Gem::Dependency
   name: ndr_dev_support
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '6.0'
+    - - "<"
       - !ruby/object:Gem::Version
-        version: '5.9'
+        version: '8.0'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '6.0'
+    - - "<"
       - !ruby/object:Gem::Version
-        version: '5.9'
+        version: '8.0'
 - !ruby/object:Gem::Dependency
   name: pry
   requirement: !ruby/object:Gem::Requirement
@@ -204,28 +210,17 @@ dependencies:
     - - ">="
       - !ruby/object:Gem::Version
         version: '0'
-description: Domain Specific Language for querying PHE NCARDRS datastores
+description: Domain Specific Language for querying NHS NCARDRS datastores
 email: []
 executables: []
 extensions: []
 extra_rdoc_files: []
 files:
-- ".github/CODEOWNERS"
-- ".github/workflows/lint.yml"
-- ".github/workflows/test.yml"
-- ".gitignore"
-- ".hound.yml"
-- ".rubocop.yml"
 - CHANGELOG.md
 - CODE_OF_CONDUCT.md
-- Gemfile
 - LICENSE.txt
 - README.md
 - Rakefile
-- bin/console
-- bin/setup
-- canql.gemspec
-- code_safety.yml
 - lib/canql.rb
 - lib/canql/constants.rb
 - lib/canql/grammars.rb
@@ -260,11 +255,11 @@ files:
 - lib/canql/parser.rb
 - lib/canql/treetop/extensions.rb
 - lib/canql/version.rb
-homepage: https://github.com/PublicHealthEngland/canql
+homepage: https://github.com/NHSDigital/canql
 licenses:
 - MIT
 metadata: {}
-post_install_message: 
+post_install_message:
 rdoc_options: []
 require_paths:
 - lib
@@ -272,15 +267,15 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '2.4'
+      version: '2.7'
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.0.3
-signing_key: 
+rubygems_version: 3.2.33
+signing_key:
 specification_version: 4
 summary: Congenital Anomaly Natural Query Language
 test_files: []

data/.github/CODEOWNERS

@@ -1,2 +0,0 @@
-# Admins should have oversight of the version:
-lib/canql/version.rb      @publichealthengland/ndr-admins

data/.github/workflows/lint.yml

@@ -1,23 +0,0 @@
-name: Lint
-
-on: [pull_request]
-
-jobs:
-  rubocop:
-    name: RuboCop
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/checkout@v2
-      with:
-        fetch-depth: 0 # fetch everything
-    - name: Set up Ruby
-      uses: ruby/setup-ruby@v1
-      with:
-        ruby-version: 3.0
-    - name: Install dependencies
-      run: bundle install
-    - name: Run RuboCop against BASE..HEAD changes
-      run: bundle exec rake rubocop:diff origin/${GITHUB_BASE_REF#*/}
-

data/.github/workflows/test.yml

@@ -1,65 +0,0 @@
-name: Test
-
-on: [push]
-
-jobs:
-  test:
-    strategy:
-      matrix:
-        ruby-version:
-          - 2.6
-          - 2.7
-          - 3.0
-
-    name: Ruby ${{ matrix.ruby-version }}
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Ruby
-      uses: ruby/setup-ruby@v1
-      with:
-        ruby-version: ${{ matrix.ruby-version }}
-    - name: Install dependencies
-      run: bundle install
-    - name: Run tests
-      run: bundle exec rake
-
-  # A utility job upon which Branch Protection can depend,
-  # thus remaining agnostic of the matrix.
-  test_matrix:
-    if: ${{ always() }}
-    runs-on: ubuntu-latest
-    name: Matrix
-    needs: test
-    steps:
-    - name: Check build matrix status
-      if: ${{ needs.test.result != 'success' }}
-      run: exit 1
-
-  notify:
-    # Run only on master, but regardless of whether tests past:
-    if: ${{ always() && github.ref == 'refs/heads/master' }}
-
-    needs: test_matrix
-
-    runs-on: ubuntu-latest
-
-    steps:
-    - uses: 8398a7/action-slack@v3
-      with:
-        status: custom
-        fields: workflow,commit,author
-        custom_payload: |
-          {
-            channel: 'C7FQWGDHP',
-            username: 'CI – ' + '${{ github.repository }}'.split('/')[1],
-            icon_emoji: ':hammer_and_wrench:',
-            attachments: [{
-              color: '${{ needs.test_matrix.result }}' === 'success' ? 'good' : '${{ needs.test_matrix.result }}' === 'failure' ? 'danger' : 'warning',
-              text: `${process.env.AS_WORKFLOW} against \`${{ github.ref }}\` (${process.env.AS_COMMIT}) for ${{ github.actor }} resulted in *${{ needs.test_matrix.result }}*.`
-            }]
-          }
-      env:
-        SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }}

data/.gitignore

@@ -1,10 +0,0 @@
-/.bundle/
-/.yardoc
-/Gemfile.lock
-/_yardoc/
-/coverage/
-/doc/
-/pkg/
-/spec/reports/
-/tmp/
-.rubocop-https---raw-githubusercontent-com-PublicHealthEngland-ndr-dev-support-master--rubocop-yml

data/.hound.yml

@@ -1,10 +0,0 @@
-fail_on_violations: true
-
-coffeescript:
-  enabled: false
-javascript:
-  enabled: false
-ruby:
-  config_file: .rubocop.yml
-scss:
-  enabled: false

data/.rubocop.yml

@@ -1 +0,0 @@
-require: ndr_dev_support

data/Gemfile

@@ -1,6 +0,0 @@
-# frozen_string_literal: true
-
-source 'https://rubygems.org'
-
-# Specify your gem's dependencies in canql.gemspec
-gemspec

data/bin/console

@@ -1,11 +0,0 @@
-#!/usr/bin/env ruby
-# frozen_string_literal: true
-
-require 'bundler/setup'
-require 'canql'
-
-# You can add fixtures and/or initialization code here to make experimenting
-# with your gem easier. You can also use a different console, if you like.
-
-require 'pry'
-Pry.start

data/bin/setup

@@ -1,7 +0,0 @@
-#!/bin/bash
-set -euo pipefail
-IFS=$'\n\t'
-
-bundle install
-
-# Do any other automated setup that you need to do here

data/canql.gemspec

@@ -1,43 +0,0 @@
-# frozen_string_literal: true
-# coding: utf-8
-
-lib = File.expand_path('../lib', __FILE__)
-$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
-require 'canql/version'
-
-Gem::Specification.new do |spec|
-  spec.name          = 'canql'
-  spec.version       = Canql::VERSION
-  spec.authors       = ['PHE NDR Development Team']
-  spec.email         = []
-
-  spec.summary       = 'Congenital Anomaly Natural Query Language'
-  spec.description   = 'Domain Specific Language for querying PHE NCARDRS datastores'
-  spec.homepage      = 'https://github.com/PublicHealthEngland/canql'
-  spec.license       = 'MIT'
-
-  spec.required_ruby_version = '>= 2.4'
-
-  spec.files         = `git ls-files -z`.split("\x0").
-                       reject { |f| f.match(%r{^(test|spec|features)/}) }
-  # SECURE BNS 2018-08-06: Minimise sharing of (public-key encrypted) slack secrets in .travis.yml
-  spec.files         -= %w[.travis.yml] # Not needed in the gem
-  spec.bindir        = 'exe'
-  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
-  spec.require_paths = ['lib']
-
-  spec.add_dependency 'chronic', '~> 0.3'
-  spec.add_dependency 'ndr_support', '>= 3.0', '< 6'
-  spec.add_dependency 'rails', '>= 4.1', '< 7'
-  spec.add_dependency 'treetop', '>= 1.4.10'
-
-  spec.add_development_dependency 'bundler'
-  spec.add_development_dependency 'guard'
-  spec.add_development_dependency 'guard-minitest'
-  spec.add_development_dependency 'guard-rubocop'
-  spec.add_development_dependency 'minitest'
-  spec.add_development_dependency 'ndr_dev_support', '~> 5.9'
-  spec.add_development_dependency 'pry'
-  spec.add_development_dependency 'rake'
-  spec.add_development_dependency 'terminal-notifier-guard' if RUBY_PLATFORM =~ /darwin/
-end

data/code_safety.yml

@@ -1,293 +0,0 @@
----
-file safety:
-  ".github/CODEOWNERS":
-    comments: 
-    reviewed_by: josh.pencheon
-    safe_revision: a964c47962d47724afd66ba59660589fc3c8b02c
-  ".github/workflows/lint.yml":
-    comments: 
-    reviewed_by: josh.pencheon
-    safe_revision: 71f6a631758a5a38814d3eafec407e0fde30101f
-  ".github/workflows/test.yml":
-    comments: 
-    reviewed_by: josh.pencheon
-    safe_revision: a3f5265f1d20a6dcb8c45ab5f09207ca7d1e255c
-  ".gitignore":
-    comments: 
-    reviewed_by: timgentry
-    safe_revision: cbb48a04cbac04a6dce845110928f69492e152a1
-  ".hound.yml":
-    comments: 
-    reviewed_by: timgentry
-    safe_revision: 0b34688f1198eace9310f47060aa8915f5b44985
-  ".rubocop.yml":
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-    safe_revision: 146b255b240b0efc928d39dd1b70ab221ddc3138
-  CHANGELOG.md:
-    comments: 
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-  CODE_OF_CONDUCT.md:
-    comments: 
-    reviewed_by: drewthorp
-    safe_revision: 6a666fcabe027056b1c774b2eabb3fdf686911d2
-  Gemfile:
-    comments: 
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-    safe_revision: 6932d590299ad4a9d2ba24b425b158c67142bf74
-  LICENSE.txt:
-    comments: 
-    reviewed_by: timgentry
-    safe_revision: ee80c4bbd5e990d38b5fc954f4fd037177672db2
-  README.md:
-    comments: 
-    reviewed_by: josh.pencheon
-    safe_revision: 3ace8794c1c545b47898da1fbee49af8afdbf521
-  Rakefile:
-    comments: 
-    reviewed_by: timgentry
-    safe_revision: 6932d590299ad4a9d2ba24b425b158c67142bf74
-  bin/console:
-    comments: 
-    reviewed_by: timgentry
-    safe_revision: d6f1ccac606735190d30c962b7681ed12aec374a
-  bin/setup:
-    comments: 
-    reviewed_by: timgentry
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-  canql.gemspec:
-    comments: 
-    reviewed_by: josh.pencheon
-    safe_revision: 146b255b240b0efc928d39dd1b70ab221ddc3138
-  lib/canql.rb:
-    comments: 
-    reviewed_by: timgentry
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-    comments: 
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-    safe_revision: 3ace8794c1c545b47898da1fbee49af8afdbf521
-  lib/canql/grammars/age.treetop:
-    comments: It is a known issue that this is potentially susceptible to certain
-      kinds of DoS attack
-    reviewed_by: timgentry
-    safe_revision: b152e94eb4e1ae6064204c95dbb56ad1200b576b
-  lib/canql/grammars/anomaly.treetop:
-    comments: It is a known issue that this is potentially susceptible to certain
-      kinds of DoS attack
-    reviewed_by: kenny.lee
-    safe_revision: 7580eb6b1196dec1fb778ee345d2bce50ef0f7c7
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-    safe_revision: 5bd6ccd1951140ab01b701583af94f414188b299
-  lib/canql/grammars/dates.treetop:
-    comments: It is a known issue that this is potentially susceptible to certain
-      kinds of DoS attack
-    reviewed_by: timgentry
-    safe_revision: 2346abb4435bf95cbe9b4d8c124123b9fefe60d6
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-  lib/canql/grammars/main.treetop:
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-      kinds of DoS attack
-    reviewed_by: josh.pencheon
-    safe_revision: 3ace8794c1c545b47898da1fbee49af8afdbf521
-  lib/canql/grammars/patient.treetop:
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-      kinds of DoS attack
-    reviewed_by: kenny.lee
-    safe_revision: a69bbd63d71d5fb2ba46d6a84589915b1120763b
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-  lib/canql/nodes/age.rb:
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-  lib/canql/nodes/e_base_records.rb:
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