cagnut_picard 0.3.0 → 0.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/cagnut_picard.rb +1 -0
- data/lib/cagnut_picard/check_tools.rb +3 -3
- data/lib/cagnut_picard/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA1:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: 7d4674f8f04a50c3aa3dafb660fe026d183eedc5
|
4
|
+
data.tar.gz: 6b71097724a22e6f87f8b615e6f119eb5245994c
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: b170e1119eddeb795c246a56031c214323324e8530b102ccd917bf46c25d26f2e31009e3611ef69539c7d9e99b29ac066efa55c075bf4646ef1f962aa351f124
|
7
|
+
data.tar.gz: 3470de1b1dd2186a8774c5f966da6dbc9bdf51e39f50fde55b5e03026d2ed9a5dedd1847c06c032fec8794acc88bd4d235630fc826496a79acfcc7577790565d
|
data/lib/cagnut_picard.rb
CHANGED
@@ -1,9 +1,9 @@
|
|
1
1
|
module CagnutPicard
|
2
2
|
module CheckTools
|
3
|
-
def check_tool tools_path
|
3
|
+
def check_tool tools_path, refs=nil
|
4
4
|
super if defined?(super)
|
5
|
-
check_Picard tools_path['Picard'] if @java
|
6
|
-
check_picard_dict refs['ref_fasta']
|
5
|
+
ver = check_Picard tools_path['Picard'] if @java
|
6
|
+
check_picard_dict refs['ref_fasta'] if !ver.blank?
|
7
7
|
end
|
8
8
|
|
9
9
|
def check_Picard path
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: cagnut_picard
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.3.
|
4
|
+
version: 0.3.1
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Shi-Gang Wang
|
@@ -9,7 +9,7 @@ authors:
|
|
9
9
|
autorequire:
|
10
10
|
bindir: exe
|
11
11
|
cert_chain: []
|
12
|
-
date: 2016-11-
|
12
|
+
date: 2016-11-07 00:00:00.000000000 Z
|
13
13
|
dependencies:
|
14
14
|
- !ruby/object:Gem::Dependency
|
15
15
|
name: cagnut_core
|