cagnut_picard 0.3.0 → 0.3.1

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checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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@@ -12,5 +12,6 @@ module CagnutPicard
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  end
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  require 'cagnut_picard/configuration'
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+ require 'cagnut_picard/check_tools'
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  require 'cagnut_picard/base'
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  require 'cagnut_picard/util'
@@ -1,9 +1,9 @@
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  module CagnutPicard
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  module CheckTools
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- def check_tool tools_path
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+ def check_tool tools_path, refs=nil
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  super if defined?(super)
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- check_Picard tools_path['Picard'] if @java
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- check_picard_dict refs['ref_fasta']
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+ ver = check_Picard tools_path['Picard'] if @java
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+ check_picard_dict refs['ref_fasta'] if !ver.blank?
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  end
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  def check_Picard path
@@ -1,3 +1,3 @@
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  module CagnutPicard
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- VERSION = "0.3.0"
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+ VERSION = "0.3.1"
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  end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: cagnut_picard
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  version: !ruby/object:Gem::Version
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- version: 0.3.0
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+ version: 0.3.1
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  platform: ruby
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  authors:
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  - Shi-Gang Wang
@@ -9,7 +9,7 @@ authors:
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  autorequire:
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  bindir: exe
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  cert_chain: []
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- date: 2016-11-01 00:00:00.000000000 Z
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+ date: 2016-11-07 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: cagnut_core