bwt 0.0.1
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- data/lib/bwt.rb +64 -0
- data/test/test_bwt.rb +13 -0
- metadata +47 -0
data/lib/bwt.rb
ADDED
@@ -0,0 +1,64 @@
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#!/usr/bin/ruby
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#
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#Initial implementation of BWT algorithm
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#
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#Burrows–Wheeler transform - block-sorting compression
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class Bwt
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def initialize;end
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#Transformation
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#@param String [String] Any given string
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#@return [String] String transformed.
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def self.bwt(string)
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string2="|#{string}~"
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p string2
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len=string2.length
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m=[]
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(0...string2.length).collect { |i| (string2 * 2)[i, string2.length] }.each do |entry|
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arr=[]
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entry.split('').each do |letter|
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arr.push(letter)
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end
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m.push(arr)
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end
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a=m.sort
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b=[]
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a.each do |lt|
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b.push(lt[len-1])
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end
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return b.join('')
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end #bwt
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#Inverse Transformation
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#@param String [String] Inverse String
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#@return [Array] Array of letters - Original String
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def self.bwt_rev(string)
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len=string.length
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s1=""
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m=Array.new
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count = 0
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while count < len do
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if not m.any?
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string.split('').each do |s|
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s1=[s]
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m.push(s1)
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m.sort!
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end
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count += 1
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else
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val = 0
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string.split('').each do |s|
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m[val].insert(0,s)
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val += 1
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end
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m.sort!
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count +=1
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end
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end
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m.each do |arr|
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if arr.last == "~"
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return arr
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end
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end
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end #bwt_rev
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end # Bwt
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data/test/test_bwt.rb
ADDED
metadata
ADDED
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--- !ruby/object:Gem::Specification
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name: bwt
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version: !ruby/object:Gem::Version
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version: 0.0.1
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prerelease:
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platform: ruby
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authors:
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- Andrei Rozanski
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2014-01-22 00:00:00.000000000 Z
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dependencies: []
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description: A simple, under development Burrows–Wheeler transform implementation
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email: andrei@ruivo.org
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executables: []
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extensions: []
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extra_rdoc_files: []
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files:
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- lib/bwt.rb
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- test/test_bwt.rb
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homepage: http://rubygems.org/gems/bwt
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licenses: []
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 1.8.23
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signing_key:
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specification_version: 3
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summary: bwt
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test_files:
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- test/test_bwt.rb
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