briard 2.1 → 2.2.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: f0eaabf0817983f43847aef742367e1a768c3887931f69d093e7fd679523c6c8
-  data.tar.gz: 8179d2fc9aae83af0df2f2b0033752d348184d55548168e32ec013c7db57be0f
+  metadata.gz: 1bfe356614a92c7cb3bf91ddbb784009efc0426a2048f87c1a27d4ef619f4219
+  data.tar.gz: 72a29897bce8b8badc62e021188f91c6716b2994d359398ee7a3f7637e26aef8
 SHA512:
-  metadata.gz: bdb837a28824c3a70d683a1d56bfd84a40b0334b742cd591020c64fa25cc45a64f429dfafe0309c1f0e6bf0387082e04308b16b9b6c93153c168d787e6ced763
-  data.tar.gz: 4a6e6d945558ca4b70a57d667e97c0994c1b25ea6f546f9f4caf5914052adaef41f3fc028757eb5cc647bc19f6d94ceedb951bdce75547853c8f02244781c27c
+  metadata.gz: 3f2a1042f8ede8431d71556f662974b3ae2ef5fff157b73aab1e0043ab98bb7415b34300c3ecb8f99eead80e99d13abcb920b1cb7123f773bb01ffe50e2aa833
+  data.tar.gz: 0e302e6d960d3672b67259aac9efbcb835f34c9b4add2861ddc9753145f4198df58608b805f31413db5d3df080ea865f7e043d59f954abdff780e6dbb66dc0d7

data/CHANGELOG.md

@@ -1,5 +1,25 @@
 # Changelog
 
+## [v2.2.3](https://github.com/front-matter/briard/tree/v2.2.3) (2021-12-08)
+
+[Full Changelog](https://github.com/front-matter/briard/compare/v2.2.2...v2.2.3)
+
+## [v2.2.2](https://github.com/front-matter/briard/tree/v2.2.2) (2021-12-08)
+
+[Full Changelog](https://github.com/front-matter/briard/compare/2.2.1...v2.2.2)
+
+## [2.2.1](https://github.com/front-matter/briard/tree/2.2.1) (2021-12-07)
+
+[Full Changelog](https://github.com/front-matter/briard/compare/2.2...2.2.1)
+
+## [2.2](https://github.com/front-matter/briard/tree/2.2) (2021-12-07)
+
+[Full Changelog](https://github.com/front-matter/briard/compare/2.1...2.2)
+
+## [2.1](https://github.com/front-matter/briard/tree/2.1) (2021-12-07)
+
+[Full Changelog](https://github.com/front-matter/briard/compare/2.0.2...2.1)
+
 ## [2.0.2](https://github.com/front-matter/briard/tree/2.0.2) (2021-12-06)
 
 [Full Changelog](https://github.com/front-matter/briard/compare/2.0.1...2.0.2)

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    briard (2.1)
+    briard (2.2.4)
       activesupport (>= 4.2.5)
       benchmark_methods (~> 0.7)
       bibtex-ruby (>= 5.1.0)

data/LICENSE.md

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2021 Front Matter
+Copyright (c) 2017 - 2021 DataCite, 2021 Front Matter
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

data/README.md

@@ -88,7 +88,7 @@ Briard reads and/or writes these metadata formats:
       <td>citation file format (cff)</td>
       <td>application/vnd.cff+yaml</td>
       <td>Yes</td>
-      <td>No</td>
+      <td>Yes</td>
     </tr>
     <tr>
       <td><a href='https://jats.nlm.nih.gov/'>JATS</a></td>

data/lib/briard/metadata_utils.rb

@@ -21,7 +21,7 @@ require_relative 'readers/schema_org_reader'
 require_relative 'writers/bibtex_writer'
 require_relative 'writers/citation_writer'
 require_relative 'writers/citeproc_writer'
-# require_relative 'writers/cff_writer'
+require_relative 'writers/cff_writer'
 require_relative 'writers/codemeta_writer'
 require_relative 'writers/crosscite_writer'
 require_relative 'writers/crossref_writer'
@@ -58,7 +58,7 @@ module Briard
     include Briard::Writers::BibtexWriter
     include Briard::Writers::CitationWriter
     include Briard::Writers::CiteprocWriter
-    # include Briard::Writers::CffWriter
+    include Briard::Writers::CffWriter
     include Briard::Writers::CodemetaWriter
     include Briard::Writers::CrossciteWriter
     include Briard::Writers::CrossrefWriter

data/lib/briard/readers/cff_reader.rb

@@ -49,7 +49,8 @@ module Briard
           sum
         end
 
-        titles =  meta.fetch("title", nil).present? ?  [{ "title" => meta.fetch("title", nil) }] : [] 
+        titles =  meta.fetch("title", nil).present? ?  [{ "title" => meta.fetch("title", nil) }] : []
+        related_identifiers = Array.wrap(cff_references(meta.fetch("references", nil)))
         rights_list = meta.fetch("license", nil).present? ? [hsh_to_spdx("rightsIdentifier" => meta.fetch("license"))] : nil
 
         { "id" => id,
@@ -60,6 +61,7 @@ module Briard
           "titles" => titles,
           "creators" => creators,
           "publisher" => publisher,
+          "related_identifiers" => related_identifiers,
           "dates" => dates,
           "publication_year" => publication_year,
           "descriptions" => meta.fetch("abstract", nil).present? ? [{ "description" => sanitize(meta.fetch("abstract")), "descriptionType" => "Abstract" }] : nil,
@@ -73,7 +75,7 @@ module Briard
       def cff_creators(creators)
         Array.wrap(creators).map do |a|
           name_identifiers = normalize_orcid(parse_attributes(a["orcid"])).present? ? [{ "nameIdentifier" => normalize_orcid(parse_attributes(a["orcid"])), "nameIdentifierScheme" => "ORCID", "schemeUri"=>"https://orcid.org" }] : nil
-          if a["given-names"].present? || name_identifiers.present?
+          if a["given-names"].present? || a["family-names"].present? || name_identifiers.present?
             given_name = parse_attributes(a["given-names"])
             family_name = parse_attributes(a["family-names"])
             affiliation = Array.wrap(a["affiliation"]).map do |a|
@@ -102,6 +104,20 @@ module Briard
           end
         end
       end
+
+      def cff_references(references)
+        Array.wrap(references).map do |r|
+          identifier = Array.wrap(r["identifiers"]).find { |i| i["type"] == "doi" }
+          
+          if identifier.present?
+            { "relatedIdentifier" => normalize_id(parse_attributes(identifier["value"])),
+              "relationType" => "References",
+              "relatedIdentifierType" => "DOI" }.compact
+          else
+            nil
+          end
+        end.compact.unwrap
+      end
     end
   end
 end

data/lib/briard/readers/datacite_reader.rb

@@ -121,7 +121,7 @@ module Briard
           end
 
           sum
-        end.uniq
+        end.uniq { |s| s["subject"] }
 
         dates = Array.wrap(meta.dig("dates", "date")).map do |r|
           if r.is_a?(Hash) && date = sanitize(r["__content__"]).presence

data/lib/briard/utils.rb

@@ -506,10 +506,12 @@ module Briard
         "orcid"
       elsif /\A(http|https):\/(\/)?github\.com\/(.+)\/package.json\z/.match(id)
         "npm"
-      elsif /\A(http|https):\/(\/)?github\.com\/(.+)\/CITATION.cff\z/.match(id)
-        "cff"
       elsif /\A(http|https):\/(\/)?github\.com\/(.+)\/codemeta.json\z/.match(id)
         "codemeta"
+      elsif /\A(http|https):\/(\/)?github\.com\/(.+)\/CITATION.cff\z/.match(id)
+        "cff"
+      elsif /\A(http|https):\/(\/)?github\.com\/(.+)\z/.match(id)
+        "cff"
       else
         "schema_org"
       end

data/lib/briard/version.rb

@@ -1,3 +1,3 @@
 module Briard
-  VERSION = "2.1"
+  VERSION = "2.2.4"
 end

data/lib/briard/writers/cff_writer.rb

@@ -1,29 +1,56 @@
 # frozen_string_literal: true
 
-# module Briard
-#   module Writers
-#     module CffWriter
-#       def cff
-#         return nil unless valid? || show_errors
+module Briard
+  module Writers
+    module CffWriter
+      def cff
+        return nil unless valid? || show_errors
+
+        # only use CFF for software
+        return nil unless %w(Software Collection).include?(types["resourceTypeGeneral"])
+
+        title = parse_attributes(titles, content: "title", first: true)
+        
+        hsh = {
+          "cff-version" => "1.2.0",
+          "message" => "If you use #{title} in your work, please cite it using the following metadata",
+          "doi" => normalize_doi(doi),
+          "repository-code" => url,
+          "title" => parse_attributes(titles, content: "title", first: true),
+          "authors" => write_cff_creators(creators),
+          "abstract" => parse_attributes(descriptions, content: "description", first: true),
+          "version" => version_info,
+          "keywords" => subjects.present? ? Array.wrap(subjects).map { |k| parse_attributes(k, content: "subject", first: true) } : nil,
+          "date-released" => get_date(dates, "Issued") || publication_year,
+          "license" => Array.wrap(rights_list).map { |l| l["rightsIdentifier"] }.compact.unwrap,
+          "references" => write_references(related_identifiers)
+        }.compact
+        hsh.to_yaml
+      end
+
+      def write_cff_creators(creators)
+        Array.wrap(creators).map do |a|
+          if a["givenName"].present? || a["nameIdentifiers"].present?
+            { "given-names" => a["givenName"],
+              "family-names" => a["familyName"],
+              "orcid" => parse_attributes(a["nameIdentifiers"], content: "nameIdentifier", first: true),
+              "affiliation" => parse_attributes(a["affiliation"], content: "name", first: true) }.compact
+          else
+            { "name" => a["name"] }
+          end
+        end
+      end
+
+      def write_references(related_identifiers)
+        return nil if related_identifiers.blank?
         
-#         hsh = {
-#           "@context" => id.present? ? "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld" : nil,
-#           "@type" => types.present? ? types["schemaOrg"] : nil,
-#           "@id" => normalize_doi(doi),
-#           "identifier" => to_schema_org_identifiers(identifiers),
-#           "codeRepository" => url,
-#           "name" => parse_attributes(titles, content: "title", first: true),
-#           "authors" => creators,
-#           "description" => parse_attributes(descriptions, content: "description", first: true),
-#           "version" => version_info,
-#           "tags" => subjects.present? ? Array.wrap(subjects).map { |k| parse_attributes(k, content: "subject", first: true) } : nil,
-#           "datePublished" => get_date(dates, "Issued") || publication_year,
-#           "dateModified" => get_date(dates, "Updated"),
-#           "publisher" => publisher,
-#           "license" => Array.wrap(rights_list).map { |l| l["rightsUri"] }.compact.unwrap,
-#         }.compact
-#         JSON.pretty_generate hsh.presence
-#       end
-#     end
-#   end
-# end
+        { "identifiers" => 
+        Array.wrap(related_identifiers).map do |r|
+          { 
+            "type" => r["relatedIdentifierType"].downcase,
+            "value" => r["relatedIdentifierType"] == "DOI" ? doi_from_url(r["relatedIdentifier"]) : r["relatedIdentifier"] }
+        end }
+      end
+    end
+  end
+end

data/spec/find_from_format_spec.rb

@@ -44,6 +44,11 @@ describe Briard::CLI do
       expect(subject.find_from_format_by_id(id)).to eq("cff")
     end
 
+    it "cff repository url" do
+      id = "https://github.com/citation-file-format/ruby-cff"
+      expect(subject.find_from_format_by_id(id)).to eq("cff")
+    end
+
     it "codemeta" do
       id = "https://github.com/datacite/maremma/blob/master/codemeta.json"
       expect(subject.find_from_format_by_id(id)).to eq("codemeta")

data/spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff_repository_url.yml

@@ -0,0 +1,75 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://raw.githubusercontent.com/citation-file-format/ruby-cff/main/CITATION.cff
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.9.6; mailto:info@front-matter.io)
+      Accept:
+      - application/json;charset=UTF-8
+      Accept-Encoding:
+      - gzip,deflate
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Connection:
+      - keep-alive
+      Content-Length:
+      - '1100'
+      Cache-Control:
+      - max-age=300
+      Content-Security-Policy:
+      - default-src 'none'; style-src 'unsafe-inline'; sandbox
+      Content-Type:
+      - text/plain; charset=utf-8
+      Etag:
+      - W/"0c65d88dd50bd96382850237735a8e2d6c0826d4497c8aafd6c28a2bacdb4127"
+      Strict-Transport-Security:
+      - max-age=31536000
+      X-Content-Type-Options:
+      - nosniff
+      X-Frame-Options:
+      - deny
+      X-Xss-Protection:
+      - 1; mode=block
+      X-Github-Request-Id:
+      - 5F70:4B14:BA3342:CA71F6:61AF4743
+      Content-Encoding:
+      - gzip
+      Accept-Ranges:
+      - bytes
+      Date:
+      - Tue, 07 Dec 2021 11:36:35 GMT
+      Via:
+      - 1.1 varnish
+      X-Served-By:
+      - cache-hhn4051-HHN
+      X-Cache:
+      - MISS
+      X-Cache-Hits:
+      - '0'
+      X-Timer:
+      - S1638876995.131742,VS0,VE231
+      Vary:
+      - Authorization,Accept-Encoding,Origin
+      Access-Control-Allow-Origin:
+      - "*"
+      X-Fastly-Request-Id:
+      - 6d84e483d6e3bfe288100e18fcf8daf4bab75805
+      Expires:
+      - Tue, 07 Dec 2021 11:41:35 GMT
+      Source-Age:
+      - '0'
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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
+    http_version:
+  recorded_at: Tue, 07 Dec 2021 11:36:35 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml

@@ -0,0 +1,61 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://api.datacite.org/dois/10.14454/fqq6-w751?include=media,client
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.9.6; mailto:info@front-matter.io)
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+      Accept-Encoding:
+      - gzip,deflate
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Date:
+      - Thu, 09 Dec 2021 08:32:01 GMT
+      Content-Type:
+      - application/json; charset=utf-8
+      Connection:
+      - keep-alive
+      Status:
+      - 200 OK
+      X-Anonymous-Consumer:
+      - 'true'
+      Cache-Control:
+      - max-age=0, private, must-revalidate
+      Vary:
+      - Accept-Encoding
+      Content-Encoding:
+      - gzip
+      Etag:
+      - W/"a9b85bed95c74fa39674054e3dc7d35e"
+      X-Runtime:
+      - '0.285565'
+      X-Request-Id:
+      - ede61ea2-065b-46d8-9498-e7c9fc7f0ef4
+      X-Powered-By:
+      - Phusion Passenger(R) 6.0.12
+      Server:
+      - nginx/1.18.0 + Phusion Passenger(R) 6.0.12
+      Access-Control-Allow-Credentials:
+      - 'true'
+      Access-Control-Allow-Methods:
+      - GET, POST, PUT, PATCH, DELETE, OPTIONS
+      Access-Control-Allow-Headers:
+      - Accept,Access-Control-Allow-Origin,Access-Control-Expose-Headers,Access-Control-Allow-Methods,Access-Control-Allow-Headers,Authorization,Cache-Control,Content-Type,DNT,If-Modified-Since,Keep-Alive,Origin,User-Agent,X-Mx-ReqToken,X-Requested-With
+      Access-Control-Expose-Headers:
+      - Authorization
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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99cxc/kdXP7NSOlDhyC2NZdwWu9JeuryUv+2+AE34/xbB5oufe2WHd5lZFE5Hc1E5+Pn9Eu41JD8wI2cQAYodP2YHHS6torI/uv/nyYim+02m8T1TMdwyeLZNQoCJ/sSIzpzZznDabpBMw3qQaJZkoFsu8jcSprSoAFwkmjqkWIe6YdCSXVUHJMvfnpqsNHc9OgUn9cuM+h7Of2PszL79tD8JFfKI3PdMvoYrtlm3tMhmPn+9m8AAAD//wMAzVtF4DcpAAA=
+    http_version:
+  recorded_at: Thu, 09 Dec 2021 08:32:01 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_DataCite.yml

@@ -0,0 +1,61 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://api.datacite.org/dois/10.5281/zenodo.10164?include=media,client
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.9.6; mailto:info@front-matter.io)
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+      Accept-Encoding:
+      - gzip,deflate
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Date:
+      - Tue, 07 Dec 2021 11:05:59 GMT
+      Content-Type:
+      - application/json; charset=utf-8
+      Connection:
+      - keep-alive
+      Status:
+      - 200 OK
+      X-Anonymous-Consumer:
+      - 'true'
+      Cache-Control:
+      - max-age=0, private, must-revalidate
+      Vary:
+      - Accept-Encoding
+      Content-Encoding:
+      - gzip
+      Etag:
+      - W/"947aba8bfca9218fef3f4988fa5bdd3c"
+      X-Runtime:
+      - '0.302320'
+      X-Request-Id:
+      - 4cb01d85-ff8d-4234-897b-2287abb71e06
+      X-Powered-By:
+      - Phusion Passenger(R) 6.0.12
+      Server:
+      - nginx/1.18.0 + Phusion Passenger(R) 6.0.12
+      Access-Control-Allow-Credentials:
+      - 'true'
+      Access-Control-Allow-Methods:
+      - GET, POST, PUT, PATCH, DELETE, OPTIONS
+      Access-Control-Allow-Headers:
+      - Accept,Access-Control-Allow-Origin,Access-Control-Expose-Headers,Access-Control-Allow-Methods,Access-Control-Allow-Headers,Authorization,Cache-Control,Content-Type,DNT,If-Modified-Since,Keep-Alive,Origin,User-Agent,X-Mx-ReqToken,X-Requested-With
+      Access-Control-Expose-Headers:
+      - Authorization
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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AA==
+    http_version:
+  recorded_at: Tue, 07 Dec 2021 11:05:59 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml

@@ -0,0 +1,61 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://api.datacite.org/dois/10.5281/zenodo.10164?include=media,client
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.9.6; mailto:info@front-matter.io)
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+      Accept-Encoding:
+      - gzip,deflate
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Date:
+      - Tue, 07 Dec 2021 11:17:12 GMT
+      Content-Type:
+      - application/json; charset=utf-8
+      Connection:
+      - keep-alive
+      Status:
+      - 200 OK
+      X-Anonymous-Consumer:
+      - 'true'
+      Cache-Control:
+      - max-age=0, private, must-revalidate
+      Vary:
+      - Accept-Encoding
+      Content-Encoding:
+      - gzip
+      Etag:
+      - W/"070d2decac0427635f0901582d71fbc5"
+      X-Runtime:
+      - '0.253152'
+      X-Request-Id:
+      - 7294dd2f-47d7-41c1-b27a-dcec91214345
+      X-Powered-By:
+      - Phusion Passenger(R) 6.0.12
+      Server:
+      - nginx/1.18.0 + Phusion Passenger(R) 6.0.12
+      Access-Control-Allow-Credentials:
+      - 'true'
+      Access-Control-Allow-Methods:
+      - GET, POST, PUT, PATCH, DELETE, OPTIONS
+      Access-Control-Allow-Headers:
+      - Accept,Access-Control-Allow-Origin,Access-Control-Expose-Headers,Access-Control-Allow-Methods,Access-Control-Allow-Headers,Authorization,Cache-Control,Content-Type,DNT,If-Modified-Since,Keep-Alive,Origin,User-Agent,X-Mx-ReqToken,X-Requested-With
+      Access-Control-Expose-Headers:
+      - Authorization
+    body:
+      encoding: ASCII-8BIT
+      string: !binary |-
+        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+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml

@@ -0,0 +1,61 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://api.datacite.org/dois/10.5281/zenodo.15497?include=media,client
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
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+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+      Accept-Encoding:
+      - gzip,deflate
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Date:
+      - Tue, 07 Dec 2021 11:17:11 GMT
+      Content-Type:
+      - application/json; charset=utf-8
+      Connection:
+      - keep-alive
+      Status:
+      - 200 OK
+      X-Anonymous-Consumer:
+      - 'true'
+      Cache-Control:
+      - max-age=0, private, must-revalidate
+      Vary:
+      - Accept-Encoding
+      Content-Encoding:
+      - gzip
+      Etag:
+      - W/"1efc7894df6207f4acc17d2ba66e6d48"
+      X-Runtime:
+      - '0.809856'
+      X-Request-Id:
+      - 4055a210-ae16-4e1f-a15a-08331dd796e2
+      X-Powered-By:
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+      Server:
+      - nginx/1.18.0 + Phusion Passenger(R) 6.0.12
+      Access-Control-Allow-Credentials:
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+      Access-Control-Allow-Methods:
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+      Access-Control-Allow-Headers:
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+    http_version:
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+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/ruby-cff.yml

@@ -0,0 +1,75 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://raw.githubusercontent.com/citation-file-format/ruby-cff/main/CITATION.cff
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
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+      Accept:
+      - application/json;charset=UTF-8
+      Accept-Encoding:
+      - gzip,deflate
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Connection:
+      - keep-alive
+      Content-Length:
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+      Cache-Control:
+      - max-age=300
+      Content-Security-Policy:
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+      Content-Type:
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+      - 1; mode=block
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+      - gzip
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+      - bytes
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+  recorded_at: Tue, 07 Dec 2021 13:58:52 GMT
+recorded_with: VCR 3.0.3

data/spec/readers/cff_reader_spec.rb

@@ -36,6 +36,7 @@ describe Briard::Metadata, vcr: true do
         "rightsIdentifierScheme"=>"SPDX",
         "rightsUri"=>"http://www.apache.org/licenses/LICENSE-2.0",
         "schemeUri"=>"https://spdx.org/licenses/"}])
+      expect(subject.related_identifiers).to eq([{"relatedIdentifier"=>"https://doi.org/10.5281/zenodo.1003149", "relatedIdentifierType"=>"DOI", "relationType"=>"References"}])
     end
 
     it "cff-converter-python" do
@@ -101,6 +102,7 @@ describe Briard::Metadata, vcr: true do
         "rightsIdentifierScheme"=>"SPDX",
         "rightsUri"=>"http://www.apache.org/licenses/LICENSE-2.0",
         "schemeUri"=>"https://spdx.org/licenses/"}])
+      expect(subject.related_identifiers).to eq([{"relatedIdentifier"=>"https://doi.org/10.5281/zenodo.1310751", "relatedIdentifierType"=>"DOI", "relationType"=>"References"}])
     end
 
     it "ruby-cff" do
@@ -131,6 +133,40 @@ describe Briard::Metadata, vcr: true do
         "rightsIdentifierScheme"=>"SPDX",
         "rightsUri"=>"http://www.apache.org/licenses/LICENSE-2.0",
         "schemeUri"=>"https://spdx.org/licenses/"}])
+      expect(subject.related_identifiers).to eq([{"relatedIdentifier"=>"https://doi.org/10.5281/zenodo.1003149", "relatedIdentifierType"=>"DOI", "relationType"=>"References"}])
+    end
+
+    it "ruby-cff repository url" do
+      input = "https://github.com/citation-file-format/ruby-cff"
+      subject = Briard::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.id).to eq("https://doi.org/10.5281/zenodo.1184077")
+      expect(subject.url).to eq("https://github.com/citation-file-format/ruby-cff")
+      expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"article-journal", "resourceTypeGeneral"=>"Software", "ris"=>"COMP", "schemaOrg"=>"SoftwareSourceCode")
+      expect(subject.creators).to eq([{"affiliation"=>[{"name"=>"The University of Manchester, UK"}], "familyName"=>"Haines", "givenName"=>"Robert", "name"=>"Haines, Robert", "nameIdentifiers"=>
+        [{"nameIdentifier"=>"https://orcid.org/0000-0002-9538-7919",
+          "nameIdentifierScheme"=>"ORCID",
+          "schemeUri"=>"https://orcid.org"}], "nameType"=>"Personal"}, {"name"=>"The Ruby Citation File Format Developers", "nameType"=>"Organizational"}])
+      expect(subject.titles).to eq([{"title"=>"Ruby CFF Library"}])
+      expect(subject.descriptions.first["description"]).to start_with("This library provides a Ruby interface to manipulate Citation File Format files")
+      expect(subject.subjects).to eq([{"subject"=>"ruby"},
+        {"subject"=>"credit"},
+        {"subject"=>"software citation"},
+        {"subject"=>"research software"},
+        {"subject"=>"software sustainability"},
+        {"subject"=>"metadata"},
+        {"subject"=>"citation file format"},
+        {"subject"=>"CFF"}])
+      expect(subject.version_info).to eq("0.9.0")
+      expect(subject.dates).to eq([{"date"=>"2021-08-18", "dateType"=>"Issued"}])
+      expect(subject.publication_year).to eq("2021")
+      expect(subject.publisher).to eq("GitHub")
+      expect(subject.rights_list).to eq([{"rights"=>"Apache License 2.0",
+        "rightsIdentifier"=>"apache-2.0",
+        "rightsIdentifierScheme"=>"SPDX",
+        "rightsUri"=>"http://www.apache.org/licenses/LICENSE-2.0",
+        "schemeUri"=>"https://spdx.org/licenses/"}])
+      expect(subject.related_identifiers).to eq([{"relatedIdentifier"=>"https://doi.org/10.5281/zenodo.1003149", "relatedIdentifierType"=>"DOI", "relationType"=>"References"}])
     end
   end
 end

data/spec/readers/datacite_reader_spec.rb

@@ -71,10 +71,7 @@ describe Briard::Metadata, vcr: true do
         {"schemeUri"=>"http://www.oecd.org/science/inno",
          "subject"=>"FOS: Computer and information sciences",
          "subjectScheme"=>"Fields of Science and Technology (FOS)",
-         "valueUri"=>"http://www.oecd.org/science/inno/38235147.pdf"},
-        {"schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf",
-         "subject"=>"FOS: Computer and information sciences",
-         "subjectScheme"=>"Fields of Science and Technology (FOS)"}])
+         "valueUri"=>"http://www.oecd.org/science/inno/38235147.pdf"}])
       expect(subject.agency).to eq("datacite")
       expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
     end

data/spec/writers/cff_writer_spec.rb

@@ -1,45 +1,112 @@
 # frozen_string_literal: true
 
-# require 'spec_helper'
+require 'spec_helper'
 
-# describe Briard::Metadata, vcr: true do
-#   context "write metadata as codemeta" do
-#     # it "SoftwareSourceCode DataCite JSON" do
-#     #   input = fixture_path + "datacite_software.json"
-#     #   subject = Briard::Metadata.new(input: input, from: "datacite_json")
-#     #   expect(subject.valid?).to be true
-#     #   json = JSON.parse(subject.codemeta)
-#     #   expect(json["@context"]).to eq("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
-#     #   expect(json["@id"]).to eq("https://doi.org/10.5063/f1m61h5x")
-#     #   expect(json["@type"]).to eq("SoftwareSourceCode")
-#     #   expect(json["identifier"]).to eq("https://doi.org/10.5063/f1m61h5x")
-#     #   expect(json["agents"]).to eq("type"=>"Person", "name"=>"Matthew B. Jones", "givenName"=>"Matthew B.", "familyName"=>"Jones")
-#     #   expect(json["title"]).to eq("dataone: R interface to the DataONE network of data repositories")
-#     #   expect(json["datePublished"]).to eq("2016")
-#     #   expect(json["publisher"]).to eq("KNB Data Repository")
-#     # end
+describe Briard::Metadata, vcr: true do
+  context "write metadata as cff" do
+    it "SoftwareSourceCode Zenodo" do
+      input = "https://doi.org/10.5281/zenodo.10164"
+      subject = Briard::Metadata.new(input: input, from: "datacite")
+      expect(subject.valid?).to be true
+      json = Psych.safe_load(subject.cff, permitted_classes: [Date])
+      expect(json["doi"]).to eq("https://doi.org/10.5281/zenodo.10164")
+      expect(json["authors"]).to eq([{"affiliation"=>"Juelich Supercomputing Centre, Jülich, Germany",
+        "family-names"=>"Klatt",
+        "given-names"=>"Torbjörn"},
+       {"affiliation"=>"Juelich Supercomputing Centre, Jülich, Germany",
+        "family-names"=>"Moser",
+        "given-names"=>"Dieter"},
+       {"affiliation"=>"Juelich Supercomputing Centre, Jülich, Germany",
+        "family-names"=>"Speck",
+        "given-names"=>"Robert"}])
+      expect(json["title"]).to eq("Pypint -- Python Framework For Parallel-In-Time Methods")
+      expect(json["abstract"]).to eq("<em>PyPinT</em> is a framework for Parallel-in-Time integration routines. The main purpose of <em>PyPinT</em> is to provide a framework for educational use and prototyping new parallel-in-time algorithms. As well it will aid in developing a high-performance C++ implementation for massively parallel computers providing the benefits of parallel-in-time routines to a zoo of time integrators in various applications.")
+      expect(json["date-released"]).to eq("2014-05-27")
+      expect(json["repository-code"]).to eq("https://zenodo.org/record/10164")
+      expect(json["keywords"]).to eq(["Parallel-in-Time Integration", "Spectral Deferred Corrections", "Multigrid", "Multi-Level Spectral Deferred Corrections", "Python Framework"])
+      expect(json["license"]).to be_nil
+      expect(json["references"]).to eq("identifiers"=>[{"type"=>"url", "value"=>"https://github.com/Parallel-in-Time/PyPinT/tree/release-v0.0.4"}])
+    end
 
-#     it "SoftwareSourceCode DataCite" do
-#       input = "https://doi.org/10.5063/f1m61h5x"
-#       subject = Briard::Metadata.new(input: input, from: "datacite")
-#       expect(subject.valid?).to be true
-#       json = JSON.parse(subject.codemeta)
-#       expect(json["@context"]).to eq("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
-#       expect(json["@id"]).to eq("https://doi.org/10.5063/f1m61h5x")
-#       expect(json["@type"]).to eq("SoftwareSourceCode")
-#       expect(json["authors"]).to eq([{"name"=>"Jones, Matthew B.; Slaughter, Peter; Nahf, Rob; Boettiger, Carl ; Jones, Chris; Read, Jordan; Walker, Lauren; Hart, Edmund; Chamberlain, Scott", "nameIdentifiers" => [], "affiliation" => []}])
-#       expect(json["name"]).to eq("dataone: R interface to the DataONE network of data repositories")
-#       expect(json["datePublished"]).to eq("2016")
-#       expect(json["publisher"]).to eq("KNB Data Repository")
-#     end
+    it "SoftwareSourceCode also Zenodo" do
+      input = "https://doi.org/10.5281/zenodo.15497"
+      subject = Briard::Metadata.new(input: input, from: "datacite")
+      expect(subject.valid?).to be true
+      json = Psych.safe_load(subject.cff, permitted_classes: [Date])
+      expect(json["doi"]).to eq("https://doi.org/10.5281/zenodo.15497")
+      expect(json["authors"]).to eq([{"affiliation"=>
+        "Instituut voor Kern- en Stralingsfysica, KU Leuven, 3001 Leuven, België",
+        "family-names"=>"Gins",
+        "given-names"=>"Wouter"},
+       {"affiliation"=>
+        "Instituut voor Kern- en Stralingsfysica, KU Leuven, 3001 Leuven, België",
+        "family-names"=>"de Groote",
+        "given-names"=>"Ruben"},
+       {"affiliation"=>
+        "Instituut voor Kern- en Stralingsfysica, KU Leuven, 3001 Leuven, België",
+        "family-names"=>"Heylen",
+        "given-names"=>"Hanne"}])
+      expect(json["title"]).to eq("Satlas: Simulation And Analysis Toolbox For Laser Spectroscopy And Nmr Experiments")
+      expect(json["abstract"]).to eq("Initial release of the satlas Python package for the analysis and simulation for laser spectroscopy experiments. For the documentation, see http://woutergins.github.io/satlas/")
+      expect(json["date-released"]).to eq("2015-02-18")
+      expect(json["repository-code"]).to eq("https://zenodo.org/record/15497")
+      expect(json["keywords"]).to be_nil
+      expect(json["license"]).to be_nil
+      expect(json["references"]).to eq("identifiers"=>[{"type"=>"url", "value"=>"https://github.com/woutergins/satlas/tree/v1.0.0"}])
+    end
 
-#     it "SoftwareSourceCode DataCite check codemeta v2" do
-#       input = "https://doi.org/10.5063/f1m61h5x"
-#       subject = Briard::Metadata.new(input: input, from: "datacite")
-#       expect(subject.valid?).to be true
-#       json = JSON.parse(subject.codemeta)
-#       expect(json["agents"]).to  be_nil
-#       expect(json["title"]).to  be_nil
-#     end
-#   end
-# end
+    it "ruby-cff" do
+      input = "https://github.com/citation-file-format/ruby-cff"
+      subject = Briard::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      json = Psych.safe_load(subject.cff, permitted_classes: [Date])
+      expect(json["doi"]).to eq("https://doi.org/10.5281/zenodo.1184077")
+      expect(json["authors"]).to eq([{"affiliation"=>"The University of Manchester, UK",
+        "family-names"=>"Haines",
+        "given-names"=>"Robert",
+        "orcid"=>"https://orcid.org/0000-0002-9538-7919"},
+       {"name"=>"The Ruby Citation File Format Developers"}])
+      expect(json["title"]).to eq("Ruby CFF Library")
+      expect(json["abstract"]).to eq("This library provides a Ruby interface to manipulate Citation File Format files")
+      expect(json["date-released"]).to eq("2021-08-18")
+      expect(json["repository-code"]).to eq("https://github.com/citation-file-format/ruby-cff")
+      expect(json["keywords"]).to eq(["ruby", "credit", "software citation", "research software", "software sustainability", "metadata", "citation file format", "CFF"])
+      expect(json["license"]).to eq("apache-2.0")
+      expect(json["references"]).to eq("identifiers"=>[{"type"=>"doi", "value"=>"10.5281/zenodo.1003149"}])
+    end
+
+    it "Collection of Jupyter notebooks" do
+      input = "https://doi.org/10.14454/fqq6-w751"
+      subject = Briard::Metadata.new(input: input, from: "datacite")
+      expect(subject.valid?).to be true
+      json = Psych.safe_load(subject.cff, permitted_classes: [Date])
+      expect(json["doi"]).to eq("https://doi.org/10.14454/fqq6-w751")
+      expect(json["authors"]).to eq([{"family-names"=>"Petryszak",
+        "given-names"=>"Robert",
+        "orcid"=>"https://orcid.org/0000-0001-6333-2182"},
+       {"affiliation"=>"DataCite",
+        "family-names"=>"Fenner",
+        "given-names"=>"Martin",
+        "orcid"=>"https://orcid.org/0000-0003-1419-2405"},
+       {"affiliation"=>"Science and Technology Facilities Council",
+        "family-names"=>"Lambert",
+        "given-names"=>"Simon",
+        "orcid"=>"https://orcid.org/0000-0001-9570-8121"},
+       {"affiliation"=>"European Bioinformatics Institute",
+        "family-names"=>"Llinares",
+        "given-names"=>"Manuel Bernal",
+        "orcid"=>"https://orcid.org/0000-0002-7368-180X"},
+       {"affiliation"=>"British Library",
+        "family-names"=>"Madden",
+        "given-names"=>"Frances",
+        "orcid"=>"https://orcid.org/0000-0002-5432-6116"}])
+      expect(json["title"]).to eq("FREYA PID Graph Jupyter Notebooks")
+      expect(json["abstract"]).to eq("Jupyter notebooks that use GraphQL to implement EC-funded FREYA Project PID Graph user stories.")
+      expect(json["date-released"]).to eq("2020-05-08")
+      expect(json["repository-code"]).to eq("https://github.com/datacite/pidgraph-notebooks-python")
+      expect(json["keywords"]).to eq(["pid graph", "pid", "graphql", "freya", "jupyter", "FOS: Computer and information sciences"])
+      expect(json["license"]).to be_nil
+      expect(json["references"]).to be_nil
+    end
+  end
+end

data/spec/writers/rdf_xml_writer_spec.rb

@@ -45,7 +45,7 @@ describe Briard::Metadata, vcr: true do
       rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
       expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
       expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
-      expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata, FOS: Computer and information sciences, FOS: Computer and information sciences")
+      expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata, FOS: Computer and information sciences")
       expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
     end
     

data/spec/writers/ris_writer_spec.rb

@@ -58,11 +58,11 @@ describe Briard::Metadata, vcr: true do
       expect(ris[10]).to eq("UR  - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml")
       expect(ris[11]).to start_with("AB  - Objective: Competence orientation")
       expect(ris[12]).to eq("KW  - medical competence")
-      expect(ris[22]).to eq("PY  - 2017")
-      expect(ris[23]).to eq("PB  - German Medical Science GMS Publishing House")
-      expect(ris[24]).to eq("LA  - en")
-      expect(ris[25]).to eq("SN  - 2366-5017")
-      expect(ris[26]).to eq("ER  - ")
+      expect(ris[21]).to eq("PY  - 2017")
+      expect(ris[22]).to eq("PB  - German Medical Science GMS Publishing House")
+      expect(ris[23]).to eq("LA  - en")
+      expect(ris[24]).to eq("SN  - 2366-5017")
+      expect(ris[25]).to eq("ER  - ")
     end
 
     it "Crossref DOI" do
@@ -97,12 +97,11 @@ describe Briard::Metadata, vcr: true do
       expect(ris[5]).to eq("AB  - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
       expect(ris[6]).to eq("KW  - datacite")
       expect(ris[9]).to eq("KW  - FOS: Computer and information sciences")
-      expect(ris[10]).to eq("KW  - FOS: Computer and information sciences")
-      expect(ris[11]).to eq("PY  - 2016")
-      expect(ris[12]).to eq("PB  - DataCite")
-      expect(ris[13]).to eq("LA  - en")
-      expect(ris[14]).to eq("SN  - 10.5438/0000-00ss")
-      expect(ris[15]).to eq("ER  - ")
+      expect(ris[10]).to eq("PY  - 2016")
+      expect(ris[11]).to eq("PB  - DataCite")
+      expect(ris[12]).to eq("LA  - en")
+      expect(ris[13]).to eq("SN  - 10.5438/0000-00ss")
+      expect(ris[14]).to eq("ER  - ")
     end
 
     it "BlogPosting Citeproc JSON" do

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: briard
 version: !ruby/object:Gem::Version
-  version: '2.1'
+  version: 2.2.4
 platform: ruby
 authors:
 - Martin Fenner
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-12-07 00:00:00.000000000 Z
+date: 2021-12-09 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: maremma
@@ -968,6 +968,7 @@ files:
 - spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/cff-converter-python.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/pidgraph-notebooks-python.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff.yml
+- spec/fixtures/vcr_cassettes/Briard_Metadata/get_cff_metadata/ruby-cff_repository_url.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/get_codemeta_metadata/maremma.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/get_codemeta_metadata/metadata_reports.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml
@@ -1211,6 +1212,11 @@ files:
 - spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/text.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/with_data_citation.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_bibtex/with_pages.yml
+- spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml
+- spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_DataCite.yml
+- spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml
+- spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml
+- spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_cff/ruby-cff.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Dataset.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Journal_article.yml
 - spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml