bolognese 1.0.21 → 1.0.23
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/Gemfile.lock +3 -3
- data/lib/bolognese/metadata.rb +4 -4
- data/lib/bolognese/metadata_utils.rb +1 -1
- data/lib/bolognese/readers/citeproc_reader.rb +1 -1
- data/lib/bolognese/readers/codemeta_reader.rb +1 -1
- data/lib/bolognese/readers/crossref_reader.rb +1 -1
- data/lib/bolognese/readers/datacite_json_reader.rb +1 -1
- data/lib/bolognese/readers/datacite_reader.rb +1 -1
- data/lib/bolognese/readers/schema_org_reader.rb +1 -1
- data/lib/bolognese/version.rb +1 -1
- data/lib/bolognese/writers/codemeta_writer.rb +1 -1
- data/lib/bolognese/writers/crosscite_writer.rb +1 -1
- data/lib/bolognese/writers/datacite_json_writer.rb +1 -1
- data/lib/bolognese/writers/jats_writer.rb +2 -2
- data/lib/bolognese/writers/schema_org_writer.rb +1 -1
- data/spec/readers/codemeta_reader_spec.rb +1 -1
- data/spec/readers/datacite_reader_spec.rb +1 -1
- data/spec/readers/schema_org_reader_spec.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA256:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: c4eb2e4d5da338dbabff08512052ec0d9442279d8924b07ca0ce925fc46e59a0
|
4
|
+
data.tar.gz: '0258b0e5068ee36fecb9b536272e42faece525db6aeed5c7bfa8b28c980d3f9e'
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 276a307518bf5bb8c284c0bfbc8fc89f2e31e9c5cd23cd0924d1ed4f80a015052541d2fd0e99ee886d62d3f139a181c5337e7632af837c3064ea6841a9cc1c7f
|
7
|
+
data.tar.gz: 1ad177666f1977d1db8a27754e60ed93fdbbf7a5310c929ffb08980c43e9d1ad74858e2355963979949036232cc416b08f945cd0a1ba8b63f875c4fcb456c921
|
data/Gemfile.lock
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
PATH
|
2
2
|
remote: .
|
3
3
|
specs:
|
4
|
-
bolognese (1.0.
|
4
|
+
bolognese (1.0.23)
|
5
5
|
activesupport (>= 4.2.5, < 6)
|
6
6
|
benchmark_methods (~> 0.7)
|
7
7
|
bibtex-ruby (~> 4.1)
|
@@ -28,7 +28,7 @@ PATH
|
|
28
28
|
GEM
|
29
29
|
remote: https://rubygems.org/
|
30
30
|
specs:
|
31
|
-
activesupport (5.2.1)
|
31
|
+
activesupport (5.2.1.1)
|
32
32
|
concurrent-ruby (~> 1.0, >= 1.0.2)
|
33
33
|
i18n (>= 0.7, < 2)
|
34
34
|
minitest (~> 5.1)
|
@@ -63,7 +63,7 @@ GEM
|
|
63
63
|
edtf (3.0.4)
|
64
64
|
activesupport (>= 3.0, < 6.0)
|
65
65
|
excon (0.62.0)
|
66
|
-
faraday (0.15.
|
66
|
+
faraday (0.15.4)
|
67
67
|
multipart-post (>= 1.2, < 3)
|
68
68
|
faraday-encoding (0.0.5)
|
69
69
|
faraday
|
data/lib/bolognese/metadata.rb
CHANGED
@@ -7,7 +7,7 @@ module Bolognese
|
|
7
7
|
include Bolognese::MetadataUtils
|
8
8
|
|
9
9
|
attr_writer :id, :provider_id, :client_id, :doi, :identifier, :creator, :contributor, :titles, :publisher,
|
10
|
-
:rights_list, :dates, :publication_year, :volume, :first_page, :last_page, :url, :
|
10
|
+
:rights_list, :dates, :publication_year, :volume, :first_page, :last_page, :url, :version_info,
|
11
11
|
:subjects, :contributor, :descriptions, :alternate_identifiers, :language, :sizes,
|
12
12
|
:formats, :schema_version, :meta, :periodical, :agency,
|
13
13
|
:format, :funding_references, :state, :geo_locations,
|
@@ -90,7 +90,7 @@ module Bolognese
|
|
90
90
|
:publication_year,
|
91
91
|
:descriptions,
|
92
92
|
:rights_list,
|
93
|
-
:
|
93
|
+
:version_info,
|
94
94
|
:subjects,
|
95
95
|
:language,
|
96
96
|
:geo_locations,
|
@@ -173,8 +173,8 @@ module Bolognese
|
|
173
173
|
@url ||= meta.fetch("url", nil)
|
174
174
|
end
|
175
175
|
|
176
|
-
def
|
177
|
-
@
|
176
|
+
def version_info
|
177
|
+
@version_info ||= meta.fetch("version_info", nil)
|
178
178
|
end
|
179
179
|
|
180
180
|
def publication_year
|
@@ -142,7 +142,7 @@ module Bolognese
|
|
142
142
|
"publisher" => publisher,
|
143
143
|
"title" => parse_attributes(titles, content: "title", first: true),
|
144
144
|
"URL" => url,
|
145
|
-
"version" =>
|
145
|
+
"version" => version_info,
|
146
146
|
"volume" => volume
|
147
147
|
}.compact.symbolize_keys
|
148
148
|
end
|
@@ -98,7 +98,7 @@ module Bolognese
|
|
98
98
|
#{}"pagination" => meta.pages.to_s.presence,
|
99
99
|
"descriptions" => meta.fetch("abstract", nil).present? ? [{ "description" => sanitize(meta.fetch("abstract")), "descriptionType" => "Abstract" }] : [],
|
100
100
|
"rights_list" => rights_list,
|
101
|
-
"
|
101
|
+
"version_info" => meta.fetch("version", nil),
|
102
102
|
"subjects" => subjects,
|
103
103
|
"state" => state
|
104
104
|
}.merge(read_options)
|
@@ -59,7 +59,7 @@ module Bolognese
|
|
59
59
|
"publication_year" => publication_year,
|
60
60
|
"descriptions" => meta.fetch("description", nil).present? ? [{ "description" => sanitize(meta.fetch("description")), "descriptionType" => "Abstract" }] : nil,
|
61
61
|
"rights_list" => [{ "rightsUri" => meta.fetch("license", nil) }.compact],
|
62
|
-
"
|
62
|
+
"version_info" => meta.fetch("version", nil),
|
63
63
|
"subjects" => subjects,
|
64
64
|
"state" => state
|
65
65
|
}.merge(read_options)
|
@@ -125,7 +125,7 @@ module Bolognese
|
|
125
125
|
"last_page" => bibliographic_metadata.dig("pages", "last_page"),
|
126
126
|
"descriptions" => crossref_description(bibliographic_metadata),
|
127
127
|
"rights_list" => crossref_license(program_metadata),
|
128
|
-
"
|
128
|
+
"version_info" => nil,
|
129
129
|
"subjects" => nil,
|
130
130
|
"language" => nil,
|
131
131
|
"sizes" => nil,
|
@@ -45,7 +45,7 @@ module Bolognese
|
|
45
45
|
"publication_year" => meta.fetch("publicationYear", nil),
|
46
46
|
"descriptions" => meta.fetch("descriptions", nil),
|
47
47
|
"rights_list" => meta.fetch("rightsList", nil),
|
48
|
-
"
|
48
|
+
"version_info" => meta.fetch("version", nil),
|
49
49
|
"subjects" => meta.fetch("subjects", nil),
|
50
50
|
"language" => meta.fetch("language", nil),
|
51
51
|
"sizes" => meta.fetch("sizes", nil),
|
@@ -204,7 +204,7 @@ module Bolognese
|
|
204
204
|
"publication_year" => parse_attributes(meta.fetch("publicationYear", nil), first: true).to_s.strip.presence,
|
205
205
|
"descriptions" => descriptions,
|
206
206
|
"rights_list" => rights_list,
|
207
|
-
"
|
207
|
+
"version_info" => meta.fetch("version", nil).to_s.presence,
|
208
208
|
"subjects" => subjects,
|
209
209
|
"language" => parse_attributes(meta.fetch("language", nil), first: true).to_s.strip.presence,
|
210
210
|
"geo_locations" => geo_locations,
|
@@ -155,7 +155,7 @@ module Bolognese
|
|
155
155
|
"dates" => dates,
|
156
156
|
"descriptions" => meta.fetch("description", nil).present? ? [{ "description" => sanitize(meta.fetch("description")), "descriptionType" => "Abstract" }] : nil,
|
157
157
|
"rights_list" => rights_list,
|
158
|
-
"
|
158
|
+
"version_info" => meta.fetch("version", nil).to_s.presence,
|
159
159
|
"subjects" => subjects,
|
160
160
|
"state" => state,
|
161
161
|
"schema_version" => meta.fetch("schemaVersion", nil).to_s.presence,
|
data/lib/bolognese/version.rb
CHANGED
@@ -15,7 +15,7 @@ module Bolognese
|
|
15
15
|
"title" => parse_attributes(titles, content: "title", first: true),
|
16
16
|
"agents" => creator,
|
17
17
|
"description" => parse_attributes(descriptions, content: "description", first: true),
|
18
|
-
"version" =>
|
18
|
+
"version" => version_info,
|
19
19
|
"tags" => subjects.present? ? Array.wrap(subjects).map { |k| parse_attributes(k, content: "subject", first: true) } : nil,
|
20
20
|
"datePublished" => get_date(dates, "Issued"),
|
21
21
|
"dateModified" => get_date(dates, "Updated"),
|
@@ -21,7 +21,7 @@ module Bolognese
|
|
21
21
|
"alternate_identifiers" => alternate_identifiers,
|
22
22
|
"sizes" => sizes,
|
23
23
|
"formats" => formats,
|
24
|
-
"version" =>
|
24
|
+
"version" => version_info,
|
25
25
|
"rights_list" => rights_list,
|
26
26
|
"descriptions" => descriptions,
|
27
27
|
"volume" => volume,
|
@@ -22,7 +22,7 @@ module Bolognese
|
|
22
22
|
"relatedIdentifiers" => to_datacite_json(related_identifiers),
|
23
23
|
"sizes" => sizes,
|
24
24
|
"formats" => formats,
|
25
|
-
"version" =>
|
25
|
+
"version" => version_info,
|
26
26
|
"rightsList" => to_datacite_json(rights_list),
|
27
27
|
"descriptions" => to_datacite_json(descriptions),
|
28
28
|
"geoLocations" => to_datacite_json(geo_locations),
|
@@ -22,7 +22,7 @@ module Bolognese
|
|
22
22
|
insert_issue(xml) if issue.present?
|
23
23
|
insert_fpage(xml) if first_page.present?
|
24
24
|
insert_lpage(xml) if last_page.present?
|
25
|
-
insert_version(xml) if
|
25
|
+
insert_version(xml) if version_info.present?
|
26
26
|
insert_pub_id(xml)
|
27
27
|
end
|
28
28
|
|
@@ -112,7 +112,7 @@ module Bolognese
|
|
112
112
|
end
|
113
113
|
|
114
114
|
def insert_version(xml)
|
115
|
-
xml.version(
|
115
|
+
xml.version(version_info)
|
116
116
|
end
|
117
117
|
|
118
118
|
def insert_pub_id(xml)
|
@@ -15,7 +15,7 @@ module Bolognese
|
|
15
15
|
"editor" => to_schema_org(contributor),
|
16
16
|
"description" => parse_attributes(descriptions, content: "description", first: true),
|
17
17
|
"license" => Array.wrap(rights_list).map { |l| l["rightsUri"] }.compact.unwrap,
|
18
|
-
"version" =>
|
18
|
+
"version" => version_info,
|
19
19
|
"keywords" => subjects.present? ? Array.wrap(subjects).map { |k| parse_attributes(k, content: "subject", first: true) }.join(", ") : nil,
|
20
20
|
"inLanguage" => language,
|
21
21
|
"contentSize" => Array.wrap(sizes).unwrap,
|
@@ -50,7 +50,7 @@ describe Bolognese::Metadata, vcr: true do
|
|
50
50
|
expect(subject.titles).to eq([{"title"=>"R Interface to the DataONE REST API"}])
|
51
51
|
expect(subject.descriptions.first["description"]).to start_with("Provides read and write access to data and metadata")
|
52
52
|
expect(subject.subjects).to eq([{"subject"=>"data sharing"}, {"subject"=>"data repository"}, {"subject"=>"DataONE"}])
|
53
|
-
expect(subject.
|
53
|
+
expect(subject.version_info).to eq("2.0.0")
|
54
54
|
expect(subject.dates).to eq([{"date"=>"2016-05-27", "dateType"=>"Issued"}, {"date"=>"2016-05-27", "dateType"=>"Created"}, {"date"=>"2016-05-27", "dateType"=>"Updated"}])
|
55
55
|
expect(subject.publication_year).to eq("2016")
|
56
56
|
expect(subject.publisher).to eq("https://cran.r-project.org")
|
@@ -672,7 +672,7 @@ describe Bolognese::Metadata, vcr: true do
|
|
672
672
|
"givenName"=>"Henk",
|
673
673
|
"familyName"=>"Eskes"}])
|
674
674
|
expect(subject.titles).to eq([{"title"=>"Multi-Sensor Reanalysis (MSR) of total ozone, version 2"}])
|
675
|
-
expect(subject.
|
675
|
+
expect(subject.version_info).to eq("2")
|
676
676
|
expect(subject.dates).to eq([{"date"=>"2014-04-25", "dateType"=>"Available"}, {"date"=>"1970-04-01 / (:tba)", "dateType"=>"Collected"}, {"date"=>"2015", "dateType"=>"Issued"}])
|
677
677
|
expect(subject.publication_year).to eq("2015")
|
678
678
|
expect(subject.publisher).to eq("Royal Netherlands Meteorological Institute (KNMI)")
|
@@ -141,7 +141,7 @@ describe Bolognese::Metadata, vcr: true do
|
|
141
141
|
expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"Gene expression matrices", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
|
142
142
|
expect(subject.creator).to eq([{"name"=>"The GTEx Consortium", "type"=>"Organization"}])
|
143
143
|
expect(subject.titles).to eq([{"title"=>"Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery"}])
|
144
|
-
expect(subject.
|
144
|
+
expect(subject.version_info).to eq("v7")
|
145
145
|
expect(subject.subjects).to eq([{"subject"=>"gtex"}, {"subject"=>"annotation"}, {"subject"=>"phenotype"}, {"subject"=>"gene regulation"}, {"subject"=>"transcriptomics"}])
|
146
146
|
expect(subject.dates).to eq([{"date"=>"2017", "dateType"=>"Issued"}])
|
147
147
|
expect(subject.publication_year).to eq("2017")
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: bolognese
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.0.
|
4
|
+
version: 1.0.23
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Martin Fenner
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2018-11-
|
11
|
+
date: 2018-11-28 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: maremma
|