bolognese 1.0.21 → 1.0.23

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data/Gemfile.lock CHANGED
@@ -1,7 +1,7 @@
1
1
  PATH
2
2
  remote: .
3
3
  specs:
4
- bolognese (1.0.21)
4
+ bolognese (1.0.23)
5
5
  activesupport (>= 4.2.5, < 6)
6
6
  benchmark_methods (~> 0.7)
7
7
  bibtex-ruby (~> 4.1)
@@ -28,7 +28,7 @@ PATH
28
28
  GEM
29
29
  remote: https://rubygems.org/
30
30
  specs:
31
- activesupport (5.2.1)
31
+ activesupport (5.2.1.1)
32
32
  concurrent-ruby (~> 1.0, >= 1.0.2)
33
33
  i18n (>= 0.7, < 2)
34
34
  minitest (~> 5.1)
@@ -63,7 +63,7 @@ GEM
63
63
  edtf (3.0.4)
64
64
  activesupport (>= 3.0, < 6.0)
65
65
  excon (0.62.0)
66
- faraday (0.15.3)
66
+ faraday (0.15.4)
67
67
  multipart-post (>= 1.2, < 3)
68
68
  faraday-encoding (0.0.5)
69
69
  faraday
@@ -7,7 +7,7 @@ module Bolognese
7
7
  include Bolognese::MetadataUtils
8
8
 
9
9
  attr_writer :id, :provider_id, :client_id, :doi, :identifier, :creator, :contributor, :titles, :publisher,
10
- :rights_list, :dates, :publication_year, :volume, :first_page, :last_page, :url, :version,
10
+ :rights_list, :dates, :publication_year, :volume, :first_page, :last_page, :url, :version_info,
11
11
  :subjects, :contributor, :descriptions, :alternate_identifiers, :language, :sizes,
12
12
  :formats, :schema_version, :meta, :periodical, :agency,
13
13
  :format, :funding_references, :state, :geo_locations,
@@ -90,7 +90,7 @@ module Bolognese
90
90
  :publication_year,
91
91
  :descriptions,
92
92
  :rights_list,
93
- :version,
93
+ :version_info,
94
94
  :subjects,
95
95
  :language,
96
96
  :geo_locations,
@@ -173,8 +173,8 @@ module Bolognese
173
173
  @url ||= meta.fetch("url", nil)
174
174
  end
175
175
 
176
- def version
177
- @version ||= meta.fetch("version", nil)
176
+ def version_info
177
+ @version_info ||= meta.fetch("version_info", nil)
178
178
  end
179
179
 
180
180
  def publication_year
@@ -142,7 +142,7 @@ module Bolognese
142
142
  "publisher" => publisher,
143
143
  "title" => parse_attributes(titles, content: "title", first: true),
144
144
  "URL" => url,
145
- "version" => version,
145
+ "version" => version_info,
146
146
  "volume" => volume
147
147
  }.compact.symbolize_keys
148
148
  end
@@ -98,7 +98,7 @@ module Bolognese
98
98
  #{}"pagination" => meta.pages.to_s.presence,
99
99
  "descriptions" => meta.fetch("abstract", nil).present? ? [{ "description" => sanitize(meta.fetch("abstract")), "descriptionType" => "Abstract" }] : [],
100
100
  "rights_list" => rights_list,
101
- "version" => meta.fetch("version", nil),
101
+ "version_info" => meta.fetch("version", nil),
102
102
  "subjects" => subjects,
103
103
  "state" => state
104
104
  }.merge(read_options)
@@ -59,7 +59,7 @@ module Bolognese
59
59
  "publication_year" => publication_year,
60
60
  "descriptions" => meta.fetch("description", nil).present? ? [{ "description" => sanitize(meta.fetch("description")), "descriptionType" => "Abstract" }] : nil,
61
61
  "rights_list" => [{ "rightsUri" => meta.fetch("license", nil) }.compact],
62
- "version" => meta.fetch("version", nil),
62
+ "version_info" => meta.fetch("version", nil),
63
63
  "subjects" => subjects,
64
64
  "state" => state
65
65
  }.merge(read_options)
@@ -125,7 +125,7 @@ module Bolognese
125
125
  "last_page" => bibliographic_metadata.dig("pages", "last_page"),
126
126
  "descriptions" => crossref_description(bibliographic_metadata),
127
127
  "rights_list" => crossref_license(program_metadata),
128
- "version" => nil,
128
+ "version_info" => nil,
129
129
  "subjects" => nil,
130
130
  "language" => nil,
131
131
  "sizes" => nil,
@@ -45,7 +45,7 @@ module Bolognese
45
45
  "publication_year" => meta.fetch("publicationYear", nil),
46
46
  "descriptions" => meta.fetch("descriptions", nil),
47
47
  "rights_list" => meta.fetch("rightsList", nil),
48
- "version" => meta.fetch("version", nil),
48
+ "version_info" => meta.fetch("version", nil),
49
49
  "subjects" => meta.fetch("subjects", nil),
50
50
  "language" => meta.fetch("language", nil),
51
51
  "sizes" => meta.fetch("sizes", nil),
@@ -204,7 +204,7 @@ module Bolognese
204
204
  "publication_year" => parse_attributes(meta.fetch("publicationYear", nil), first: true).to_s.strip.presence,
205
205
  "descriptions" => descriptions,
206
206
  "rights_list" => rights_list,
207
- "version" => meta.fetch("version", nil).to_s.presence,
207
+ "version_info" => meta.fetch("version", nil).to_s.presence,
208
208
  "subjects" => subjects,
209
209
  "language" => parse_attributes(meta.fetch("language", nil), first: true).to_s.strip.presence,
210
210
  "geo_locations" => geo_locations,
@@ -155,7 +155,7 @@ module Bolognese
155
155
  "dates" => dates,
156
156
  "descriptions" => meta.fetch("description", nil).present? ? [{ "description" => sanitize(meta.fetch("description")), "descriptionType" => "Abstract" }] : nil,
157
157
  "rights_list" => rights_list,
158
- "version" => meta.fetch("version", nil).to_s.presence,
158
+ "version_info" => meta.fetch("version", nil).to_s.presence,
159
159
  "subjects" => subjects,
160
160
  "state" => state,
161
161
  "schema_version" => meta.fetch("schemaVersion", nil).to_s.presence,
@@ -1,3 +1,3 @@
1
1
  module Bolognese
2
- VERSION = "1.0.21"
2
+ VERSION = "1.0.23"
3
3
  end
@@ -15,7 +15,7 @@ module Bolognese
15
15
  "title" => parse_attributes(titles, content: "title", first: true),
16
16
  "agents" => creator,
17
17
  "description" => parse_attributes(descriptions, content: "description", first: true),
18
- "version" => version,
18
+ "version" => version_info,
19
19
  "tags" => subjects.present? ? Array.wrap(subjects).map { |k| parse_attributes(k, content: "subject", first: true) } : nil,
20
20
  "datePublished" => get_date(dates, "Issued"),
21
21
  "dateModified" => get_date(dates, "Updated"),
@@ -21,7 +21,7 @@ module Bolognese
21
21
  "alternate_identifiers" => alternate_identifiers,
22
22
  "sizes" => sizes,
23
23
  "formats" => formats,
24
- "version" => version,
24
+ "version" => version_info,
25
25
  "rights_list" => rights_list,
26
26
  "descriptions" => descriptions,
27
27
  "volume" => volume,
@@ -22,7 +22,7 @@ module Bolognese
22
22
  "relatedIdentifiers" => to_datacite_json(related_identifiers),
23
23
  "sizes" => sizes,
24
24
  "formats" => formats,
25
- "version" => version,
25
+ "version" => version_info,
26
26
  "rightsList" => to_datacite_json(rights_list),
27
27
  "descriptions" => to_datacite_json(descriptions),
28
28
  "geoLocations" => to_datacite_json(geo_locations),
@@ -22,7 +22,7 @@ module Bolognese
22
22
  insert_issue(xml) if issue.present?
23
23
  insert_fpage(xml) if first_page.present?
24
24
  insert_lpage(xml) if last_page.present?
25
- insert_version(xml) if version.present?
25
+ insert_version(xml) if version_info.present?
26
26
  insert_pub_id(xml)
27
27
  end
28
28
 
@@ -112,7 +112,7 @@ module Bolognese
112
112
  end
113
113
 
114
114
  def insert_version(xml)
115
- xml.version(version)
115
+ xml.version(version_info)
116
116
  end
117
117
 
118
118
  def insert_pub_id(xml)
@@ -15,7 +15,7 @@ module Bolognese
15
15
  "editor" => to_schema_org(contributor),
16
16
  "description" => parse_attributes(descriptions, content: "description", first: true),
17
17
  "license" => Array.wrap(rights_list).map { |l| l["rightsUri"] }.compact.unwrap,
18
- "version" => version,
18
+ "version" => version_info,
19
19
  "keywords" => subjects.present? ? Array.wrap(subjects).map { |k| parse_attributes(k, content: "subject", first: true) }.join(", ") : nil,
20
20
  "inLanguage" => language,
21
21
  "contentSize" => Array.wrap(sizes).unwrap,
@@ -50,7 +50,7 @@ describe Bolognese::Metadata, vcr: true do
50
50
  expect(subject.titles).to eq([{"title"=>"R Interface to the DataONE REST API"}])
51
51
  expect(subject.descriptions.first["description"]).to start_with("Provides read and write access to data and metadata")
52
52
  expect(subject.subjects).to eq([{"subject"=>"data sharing"}, {"subject"=>"data repository"}, {"subject"=>"DataONE"}])
53
- expect(subject.version).to eq("2.0.0")
53
+ expect(subject.version_info).to eq("2.0.0")
54
54
  expect(subject.dates).to eq([{"date"=>"2016-05-27", "dateType"=>"Issued"}, {"date"=>"2016-05-27", "dateType"=>"Created"}, {"date"=>"2016-05-27", "dateType"=>"Updated"}])
55
55
  expect(subject.publication_year).to eq("2016")
56
56
  expect(subject.publisher).to eq("https://cran.r-project.org")
@@ -672,7 +672,7 @@ describe Bolognese::Metadata, vcr: true do
672
672
  "givenName"=>"Henk",
673
673
  "familyName"=>"Eskes"}])
674
674
  expect(subject.titles).to eq([{"title"=>"Multi-Sensor Reanalysis (MSR) of total ozone, version 2"}])
675
- expect(subject.version).to eq("2")
675
+ expect(subject.version_info).to eq("2")
676
676
  expect(subject.dates).to eq([{"date"=>"2014-04-25", "dateType"=>"Available"}, {"date"=>"1970-04-01 / (:tba)", "dateType"=>"Collected"}, {"date"=>"2015", "dateType"=>"Issued"}])
677
677
  expect(subject.publication_year).to eq("2015")
678
678
  expect(subject.publisher).to eq("Royal Netherlands Meteorological Institute (KNMI)")
@@ -141,7 +141,7 @@ describe Bolognese::Metadata, vcr: true do
141
141
  expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"Gene expression matrices", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
142
142
  expect(subject.creator).to eq([{"name"=>"The GTEx Consortium", "type"=>"Organization"}])
143
143
  expect(subject.titles).to eq([{"title"=>"Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery"}])
144
- expect(subject.version).to eq("v7")
144
+ expect(subject.version_info).to eq("v7")
145
145
  expect(subject.subjects).to eq([{"subject"=>"gtex"}, {"subject"=>"annotation"}, {"subject"=>"phenotype"}, {"subject"=>"gene regulation"}, {"subject"=>"transcriptomics"}])
146
146
  expect(subject.dates).to eq([{"date"=>"2017", "dateType"=>"Issued"}])
147
147
  expect(subject.publication_year).to eq("2017")
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bolognese
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.0.21
4
+ version: 1.0.23
5
5
  platform: ruby
6
6
  authors:
7
7
  - Martin Fenner
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2018-11-26 00:00:00.000000000 Z
11
+ date: 2018-11-28 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: maremma