RubyGems - bolognese - Versions diffs - 2.3.7 → 2.4.0 - Mend

bolognese 2.3.7 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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data/spec/fixtures/datacite-example-complicated-v3.0.xml DELETED Viewed

@@ -1,48 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<resource xsi:schemaLocation="http://datacite.org/schema/kernel-3.0 http://schema.datacite.org/meta/kernel-3.0/metadata.xsd" xmlns="http://datacite.org/schema/kernel-3.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-	<identifier identifierType="DOI">10.5072/testpub</identifier>
-	<creators>
-		<creator>
-			<creatorName>Smith, John</creatorName>
-		</creator>
-		<creator>
-			<creatorName>つまらないものですが</creatorName>
-			<nameIdentifier nameIdentifierScheme="ISNI" schemeURI="http://isni.org/isni/">0000000134596520</nameIdentifier>
-		</creator>
-	</creators>
-	<titles>
-		<title>Właściwości rzutowań podprzestrzeniowych</title>
-		<title titleType="TranslatedTitle">Translation of Polish titles</title>
-	</titles>
-	<publisher>Springer</publisher>
-	<publicationYear>2010</publicationYear>
-	<subjects>
-		<subject subjectScheme="DDC">830 German &amp; related literatures</subject>
-		<subject>Polish Literature</subject>
-	</subjects>
-	<contributors>
-		<contributor contributorType="DataCollector">
-			<contributorName>Doe, John</contributorName>
-			<nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5393-1421</nameIdentifier>
-		</contributor>
-	</contributors>
-	<language>GER</language>
-	<resourceType resourceTypeGeneral="Text">Monograph</resourceType>
-	<alternateIdentifiers>
-		<alternateIdentifier alternateIdentifierType="ISBN">937-0-4523-12357-6</alternateIdentifier>
-	</alternateIdentifiers>
-	<relatedIdentifiers>
-		<relatedIdentifier relatedIdentifierType="DOI" relationType="IsPartOf">10.5272/oldertestpub</relatedIdentifier>
-	</relatedIdentifiers>
-	<sizes>
-		<size>256 pages</size>
-	</sizes>
-	<formats>
-		<format>pdf</format>
-	</formats>
-	<version>2</version>
-	<rightsList> <rights rightsURI="http://creativecommons.org/licenses/by-nd/2.0/">Creative Commons Attribution-NoDerivs 2.0 Generic</rights></rightsList>
-	<descriptions>
-		<description descriptionType="Abstract">Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.</description>
-	</descriptions>
-</resource>

data/spec/fixtures/datacite-example-complicated-v4.0.xml DELETED Viewed

@@ -1,54 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4.0" xsi:schemaLocation="http://datacite.org/schema/kernel-4.0 http://schema.datacite.org/meta/kernel-4.0/metadata.xsd">
-  <identifier identifierType="DOI">10.5072/testpub</identifier>
-  <creators>
-    <creator>
-      <creatorName>Smith, John</creatorName>
-    </creator>
-    <creator>
-      <creatorName>つまらないものですが</creatorName>
-      <nameIdentifier nameIdentifierScheme="ISNI" schemeURI="http://isni.org/isni/">0000000134596520</nameIdentifier>
-    </creator>
-  </creators>
-  <titles>
-    <title>Właściwości rzutowań podprzestrzeniowych</title>
-    <title titleType="TranslatedTitle">Translation of Polish titles</title>
-  </titles>
-  <publisher>Springer</publisher>
-  <publicationYear>2010</publicationYear>
-  <subjects>
-    <subject subjectScheme="DDC">830 German &amp; related literatures</subject>
-    <subject>Polish Literature</subject>
-  </subjects>
-  <contributors>
-    <contributor contributorType="DataCollector">
-      <contributorName>Doe, John</contributorName>
-      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5393-1421</nameIdentifier>
-    </contributor>
-  </contributors>
-  <language>GER</language>
-  <resourceType resourceTypeGeneral="Text">Monograph</resourceType>
-  <alternateIdentifiers>
-    <alternateIdentifier alternateIdentifierType="ISBN">937-0-4523-12357-6</alternateIdentifier>
-  </alternateIdentifiers>
-  <relatedIdentifiers>
-    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsPartOf">10.5272/oldertestpub</relatedIdentifier>
-  </relatedIdentifiers>
-  <sizes>
-    <size>256 pages</size>
-  </sizes>
-  <formats>
-    <format>pdf</format>
-  </formats>
-  <version>2</version>
-  <rightsList>
-    <rights rightsURI="http://creativecommons.org/licenses/by-nd/2.0/">Creative Commons Attribution-NoDerivs 2.0 Generic</rights>
-  </rightsList>
-  <descriptions>
-    <description descriptionType="Abstract">
-      Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea
-      takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores
-      et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.
-    </description>
-  </descriptions>
-</resource>

data/spec/fixtures/datacite-example-complicated-v4.1.xml DELETED Viewed

@@ -1,57 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
-  <identifier identifierType="DOI">10.5072/testpub</identifier>
-  <creators>
-    <creator>
-      <creatorName nameType="Personal">Smith, John</creatorName>
-    </creator>
-    <creator>
-      <creatorName>つまらないものですが</creatorName>
-      <nameIdentifier nameIdentifierScheme="ISNI" schemeURI="http://isni.org/isni/">0000000134596520</nameIdentifier>
-    </creator>
-  </creators>
-  <titles>
-    <title>Właściwości rzutowań podprzestrzeniowych</title>
-    <title titleType="TranslatedTitle">Translation of Polish titles</title>
-  </titles>
-  <publisher>Springer</publisher>
-  <publicationYear>2010</publicationYear>
-  <subjects>
-    <subject subjectScheme="DDC">830 German &amp; related literatures</subject>
-    <subject>Polish Literature</subject>
-  </subjects>
-  <dates>
-    <date dateType="Other" dateInformation="Correction">2012-12-13</date>
-  </dates>
-  <contributors>
-    <contributor contributorType="DataCollector">
-      <contributorName>Doe, John</contributorName>
-      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5393-1421</nameIdentifier>
-    </contributor>
-  </contributors>
-  <language>GER</language>
-  <resourceType resourceTypeGeneral="Text">Monograph</resourceType>
-  <alternateIdentifiers>
-    <alternateIdentifier alternateIdentifierType="ISBN">937-0-4523-12357-6</alternateIdentifier>
-  </alternateIdentifiers>
-  <relatedIdentifiers>
-    <relatedIdentifier resourceTypeGeneral="Text" relatedIdentifierType="DOI" relationType="IsPartOf">10.5272/oldertestpub</relatedIdentifier>
-  </relatedIdentifiers>
-  <sizes>
-    <size>256 pages</size>
-  </sizes>
-  <formats>
-    <format>pdf</format>
-  </formats>
-  <version>2</version>
-  <rightsList>
-    <rights xml:lang="eng" rightsURI="http://creativecommons.org/licenses/by-nd/2.0/">Creative Commons Attribution-NoDerivs 2.0 Generic</rights>
-  </rightsList>
-  <descriptions>
-    <description descriptionType="Abstract">
-      Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea
-      takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores
-      et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.
-    </description>
-  </descriptions>
-</resource>

data/spec/fixtures/datacite-example-dissertation-v4.4.xml DELETED Viewed

@@ -1,56 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-  xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.4/metadata.xsd">
-  <identifier identifierType="DOI">10.5072/100044</identifier>
-  <creators>
-    <creator>
-      <creatorName nameType="Personal">Luo, R</creatorName>
-    </creator>
-    <creator>
-      <creatorName nameType="Personal">Liu, B</creatorName>
-    </creator>
-    <creator>
-      <creatorName nameType="Personal">Xie, Y</creatorName>
-    </creator>
-    <creator>
-      <creatorName nameType="Personal">Li, Z</creatorName>
-    </creator>
-  </creators>
-  <titles>
-    <title xml:lang="en">
-      Software and supporting material for "SOAPdenovo2: An empirically improved memory-efficient short read de novo assembly"
-    </title>
-  </titles>
-  <publisher xml:lang="en">GigaScience Database</publisher>
-  <publicationYear>2012</publicationYear>
-  <subjects>
-    <subject xml:lang="en">DNA (Genetics)</subject>
-    <subject xml:lang="en">Computer Program</subject>
-  </subjects>
-  <dates>
-    <date dateType="Available">2012-12-13</date>
-  </dates>
-  <language>en</language>
-  <resourceType resourceTypeGeneral="Dissertation"></resourceType>
-  <relatedIdentifiers>
-    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsReferencedBy">10.5072/2047-217X-1-1</relatedIdentifier>
-    <relatedIdentifier relatedIdentifierType="DOI" relationType="Compiles">10.5072/100038</relatedIdentifier>
-  </relatedIdentifiers>
-  <sizes>
-    <size>31 MB</size>
-  </sizes>
-  <rightsList>
-    <rights xml:lang="en-US" schemeURI="https://spdx.org/licenses/" rightsIdentifierScheme="SPDX" rightsIdentifier="CC0 1.0" rightsURI="http://creativecommons.org/publicdomain/zero/1.0/"/>
-  </rightsList>
-  <descriptions>
-    <description xml:lang="en" descriptionType="Abstract">
-      SOAPdenovo2 is the latest de novo genome assembly package from BGI's SOAP (short oligonucleotide analysis package) suite of tools (homepage here: http://soap.genomics.org.cn/). Compared to SOAPdenovo1, this new version has the advantage of a new
-      algorithm design that reduces memory consumption in graph construction, resolves more repeat regions in contig assembly, increases coverage and length in scaffold construction, improves gap closure, and is optimized for large genomes. Using new
-      sequencing data from the YH (Homo sapiens) diploid genome - the first sequenced Han Chinese individual, an updated assembly was produced (see dataset here: doi:10.5524/100038), with the N50 scores for the contig and scaffold being 3-fold and 50-fold
-      longer, respectively, than the first published version. The genome coverage increased from 81.16% to 93.91%, and memory consumption was ~2/3 times lower during the point of largest memory consumption. Benchmarking with Assemblathon1 and GAGE datasets
-      shows that SOAPdenovo2 greatly surpasses its predecessor SOAPdenovo1 and is competitive to other assemblers on both assembly length and accuracy. In order to facilitate readers to repeat and recreate these findings, configured packages with the
-      compressed pipelines containing all of the necessary shell scripts and tools are available from the BGI FTP server (ftp://public.genomics.org.cn/BGI/SOAPdenovo2). The latest version of SOAPdenovo2 is available from Sourceforge:
-      http://soapdenovo2.sourceforge.net/ These pipelines will also soon be made available from our data platform as Galaxy workflows: http://galaxy.cbiit.cuhk.edu.hk/
-    </description>
-  </descriptions>
-</resource>

data/spec/fixtures/datacite-example-escaped-text.xml DELETED Viewed

@@ -1,56 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
-  <identifier identifierType="DOI">10.5072/testpub</identifier>
-  <creators>
-    <creator>
-      <creatorName nameType="Personal">Smith, John</creatorName>
-    </creator>
-    <creator>
-      <creatorName>つまらないものですが</creatorName>
-      <nameIdentifier nameIdentifierScheme="ISNI" schemeURI="http://isni.org/isni/">0000000134596520</nameIdentifier>
-    </creator>
-  </creators>
-  <titles>
-    <title>Some initial text&lt;the rest of the text won't display.</title>
-  </titles>
-  <publisher>Springer</publisher>
-  <publicationYear>2010</publicationYear>
-  <subjects>
-    <subject subjectScheme="DDC">830 German &amp; related literatures</subject>
-    <subject>Polish Literature</subject>
-  </subjects>
-  <dates>
-    <date dateType="Other" dateInformation="Correction">2012-12-13</date>
-  </dates>
-  <contributors>
-    <contributor contributorType="DataCollector">
-      <contributorName>Doe, John</contributorName>
-      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5393-1421</nameIdentifier>
-    </contributor>
-  </contributors>
-  <language>GER</language>
-  <resourceType resourceTypeGeneral="Text">Monograph</resourceType>
-  <alternateIdentifiers>
-    <alternateIdentifier alternateIdentifierType="ISBN">937-0-4523-12357-6</alternateIdentifier>
-  </alternateIdentifiers>
-  <relatedIdentifiers>
-    <relatedIdentifier resourceTypeGeneral="Text" relatedIdentifierType="DOI" relationType="IsPartOf">10.5272/oldertestpub</relatedIdentifier>
-  </relatedIdentifiers>
-  <sizes>
-    <size>256 pages</size>
-  </sizes>
-  <formats>
-    <format>pdf</format>
-  </formats>
-  <version>2</version>
-  <rightsList>
-    <rights xml:lang="eng" rightsURI="http://creativecommons.org/licenses/by-nd/2.0/">Creative Commons Attribution-NoDerivs 2.0 Generic</rights>
-  </rightsList>
-  <descriptions>
-    <description descriptionType="Abstract">
-      Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea
-      takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores
-      et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.
-    </description>
-  </descriptions>
-</resource>

data/spec/fixtures/datacite-example-full-v4.4.xml DELETED Viewed

@@ -1,114 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-  xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.4/metadata.xsd">
-  <identifier identifierType="DOI">10.5072/example-full</identifier>
-  <creators>
-    <creator>
-      <creatorName nameType="Personal">Miller, Elizabeth</creatorName>
-      <givenName>Elizabeth</givenName>
-      <familyName>Miller</familyName>
-      <nameIdentifier schemeURI="https://orcid.org/" nameIdentifierScheme="ORCID">0000-0001-5000-0007</nameIdentifier>
-      <affiliation>DataCite</affiliation>
-    </creator>
-  </creators>
-  <titles>
-    <title xml:lang="en-US">Full DataCite XML Example</title>
-    <title xml:lang="en-US" titleType="Subtitle">Demonstration of DataCite Properties.</title>
-  </titles>
-  <publisher xml:lang="en">DataCite</publisher>
-  <publicationYear>2014</publicationYear>
-  <subjects>
-    <subject xml:lang="en-US" schemeURI="http://dewey.info/" subjectScheme="dewey" classificationCode="000">computer science</subject>
-  </subjects>
-  <contributors>
-    <contributor contributorType="ProjectLeader">
-      <contributorName>Starr, Joan</contributorName>
-      <givenName>Joan</givenName>
-      <familyName>Starr</familyName>
-      <nameIdentifier schemeURI="https://orcid.org/" nameIdentifierScheme="ORCID">0000-0002-7285-027X</nameIdentifier>
-      <affiliation>California Digital Library</affiliation>
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-  </contributors>
-  <dates>
-    <date dateType="Updated" dateInformation="Updated with 4.4 properties">2021-01-26</date>
-  </dates>
-  <language>en-US</language>
-  <resourceType resourceTypeGeneral="Software">XML</resourceType>
-  <alternateIdentifiers>
-    <alternateIdentifier alternateIdentifierType="URL">https://schema.datacite.org/meta/kernel-4.4/example/datacite-example-full-v4.4.xml</alternateIdentifier>
-  </alternateIdentifiers>
-  <relatedIdentifiers>
-    <relatedIdentifier relatedIdentifierType="URL" relationType="HasMetadata" relatedMetadataScheme="citeproc+json" schemeURI="https://github.com/citation-style-language/schema/raw/master/csl-data.json">https://data.datacite.org/application/citeproc+json/10.5072/example-full</relatedIdentifier>
-    <relatedIdentifier relatedIdentifierType="arXiv" relationType="IsReviewedBy" resourceTypeGeneral="Text">arXiv:0706.0001</relatedIdentifier>
-  </relatedIdentifiers>
-  <sizes>
-    <size>4 kB</size>
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-  <formats>
-    <format>application/xml</format>
-  </formats>
-  <version>4.2</version>
-  <rightsList>
-    <rights xml:lang="en-US" schemeURI="https://spdx.org/licenses/" rightsIdentifierScheme="SPDX" rightsIdentifier="CC0 1.0" rightsURI="https://creativecommons.org/publicdomain/zero/1.0/"/>
-  </rightsList>
-  <descriptions>
-    <description xml:lang="en-US" descriptionType="Abstract">XML example of all DataCite Metadata Schema v4.4 properties.</description>
-  </descriptions>
-  <geoLocations>
-    <geoLocation>
-      <geoLocationPlace>Atlantic Ocean</geoLocationPlace>
-      <geoLocationPoint>
-        <pointLongitude>-67.302</pointLongitude>
-        <pointLatitude>31.233</pointLatitude>
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-      <geoLocationBox>
-        <westBoundLongitude>-71.032</westBoundLongitude>
-        <eastBoundLongitude>-68.211</eastBoundLongitude>
-        <southBoundLatitude>41.090</southBoundLatitude>
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-      <geoLocationPolygon>
-        <polygonPoint>
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-  <fundingReferences>
-    <fundingReference>
-      <funderName>National Science Foundation</funderName>
-      <funderIdentifier funderIdentifierType="Crossref Funder ID">https://doi.org/10.13039/100000001</funderIdentifier>
-      <awardNumber>CBET-106</awardNumber>
-      <awardTitle>Full DataCite XML Example</awardTitle>
-    </fundingReference>
-  </fundingReferences>
-  <relatedItems>
-    <relatedItem relationType="IsPublishedIn" relatedItemType="Journal">
-      <relatedItemIdentifier relatedItemIdentifierType="DOI">10.1016/j.physletb.2017.11.044</relatedItemIdentifier>
-      <titles>
-        <title>Physics letters / B</title>
-      </titles>
-      <publicationYear>2018</publicationYear>
-      <volume>776</volume>
-      <firstPage>249</firstPage>
-      <lastPage>264</lastPage>
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