bolognese 2.3.7 → 2.3.9

data/spec/writers/bibtex_writer_spec.rb

@@ -1,195 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as bibtex" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.7554/elife.01567")
-      expect(bibtex[:doi]).to eq("10.7554/elife.01567")
-      expect(bibtex[:url]).to eq("https://elifesciences.org/articles/01567")
-      expect(bibtex[:title]).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(bibtex[:author]).to eq("Sankar, Martial and Nieminen, Kaisa and Ragni, Laura and Xenarios, Ioannis and Hardtke, Christian S")
-      expect(bibtex[:journal]).to eq("eLife")
-      expect(bibtex[:year]).to eq("2014")
-      expect(bibtex[:copyright]).to eq("Creative Commons Attribution 3.0 Unported")
-    end
-
-    it "with schema_3" do
-      # input = fixture_path + "datacite_kernel_3.json"
-      input = fixture_path + "datacite_schema_3.xml"
-      json = Bolognese::Metadata.new(input: input, from: "datacite")
-      subject = Bolognese::Metadata.new(input: json.meta.to_json, from: "datacite_json")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(bibtex[:doi]).to eq("10.5061/dryad.8515")
-      expect(bibtex[:year]).to eq("2011")
-    end
-
-    it "with pages" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.1155/2012/291294")
-      expect(bibtex[:doi]).to eq("10.1155/2012/291294")
-      expect(bibtex[:url]).to eq("http://www.hindawi.com/journals/pm/2012/291294/")
-      expect(bibtex[:title]).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
-      expect(bibtex[:author]).to eq("Thanassi, Wendy and Noda, Art and Hernandez, Beatriz and Newell, Jeffery and Terpeluk, Paul and Marder, David and Yesavage, Jerome A.")
-      expect(bibtex[:journal]).to eq("Pulmonary Medicine")
-      expect(bibtex[:pages]).to eq("1-7")
-      expect(bibtex[:year]).to eq("2012")
-      expect(bibtex[:copyright]).to eq("Creative Commons Attribution 3.0 Unported")
-    end
-
-    it "text" do
-      input = "10.3204/desy-2014-01645"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("phdthesis")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.3204/desy-2014-01645")
-      expect(bibtex[:doi]).to eq("10.3204/desy-2014-01645")
-      expect(bibtex[:title]).to eq("Dynamics of colloids in molecular glass forming liquids studied via X-ray photon correlation spectroscopy")
-      expect(bibtex[:pages]).to eq("2014")
-      expect(bibtex[:year]).to eq("2014")
-    end
-
-    it "climate data" do
-      input = "https://doi.org/10.5067/altcy-tj122"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5067/altcy-tj122")
-      expect(bibtex[:doi]).to eq("10.5067/altcy-tj122")
-      expect(bibtex[:title]).to eq("Integrated Multi-Mission Ocean Altimeter Data for Climate Research Version 2")
-      expect(bibtex[:pages]).to be_nil
-    end
-    
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5438/qeg0-3gm3")
-      expect(bibtex[:doi]).to eq("10.5438/qeg0-3gm3")
-      expect(bibtex[:url]).to eq("https://github.com/datacite/maremma")
-      expect(bibtex[:title]).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(bibtex[:author]).to eq("Fenner, Martin")
-      expect(bibtex[:publisher]).to eq("DataCite")
-      expect(bibtex[:keywords]).to eq("faraday, excon, net/http")
-      expect(bibtex[:year]).to eq("2017")
-      expect(bibtex[:copyright]).to eq("MIT License")
-    end
-
-    it "BlogPosting from string" do
-      input = fixture_path + "datacite.json"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
-      expect(subject.valid?).to be true
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(bibtex[:doi]).to eq("10.5438/4k3m-nyvg")
-      expect(bibtex[:title]).to eq("Eating your own Dog Food")
-      expect(bibtex[:author]).to eq("Fenner, Martin")
-      expect(bibtex[:publisher]).to eq("DataCite")
-      expect(bibtex[:year]).to eq("2016")
-    end
-
-    it "BlogPosting" do
-      input = "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(bibtex[:doi]).to eq("10.5438/4k3m-nyvg")
-      expect(bibtex[:title]).to eq("Eating your own Dog Food")
-      expect(bibtex[:author]).to eq("Fenner, Martin")
-      expect(bibtex[:publisher]).to eq("DataCite")
-      expect(bibtex[:year]).to eq("2016")
-    end
-
-    it "Dataset" do
-      input = "https://doi.org/10.5061/dryad.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(bibtex[:doi]).to eq("10.5061/dryad.8515")
-      expect(bibtex[:title]).to eq("Data from: A new malaria agent in African hominids.")
-      expect(bibtex[:author]).to eq("Ollomo, Benjamin and Durand, Patrick and Prugnolle, Franck and Douzery, Emmanuel J. P. and Arnathau, Céline and Nkoghe, Dieudonné and Leroy, Eric and Renaud, François")
-      expect(bibtex[:publisher]).to eq("Dryad")
-      expect(bibtex[:year]).to eq("2011")
-      expect(bibtex[:copyright]).to eq("Creative Commons Zero v1.0 Universal")
-    end
-
-    it "from schema_org" do
-      input = "https://blog.datacite.org/eating-your-own-dog-food/"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(bibtex[:doi]).to eq("10.5438/4k3m-nyvg")
-      expect(bibtex[:title]).to eq("Eating your own Dog Food")
-      expect(bibtex[:author]).to eq("Fenner, Martin")
-      expect(bibtex[:publisher]).to eq("DataCite")
-      expect(bibtex[:keywords]).to eq("datacite, doi, metadata, featured")
-      expect(bibtex[:year]).to eq("2016")
-    end
-
-    it "authors with affiliations" do
-      input = "10.16910/jemr.9.1.2"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.16910/jemr.9.1.2")
-      expect(bibtex[:doi]).to eq("10.16910/jemr.9.1.2")
-      expect(bibtex[:title]).to eq("Eye tracking scanpath analysis techniques on web pages: A survey, evaluation and comparison")
-      expect(bibtex[:author]).to eq("Eraslan, Sukru and Yesilada, Yeliz and Harper, Simon")
-      expect(bibtex[:publisher]).to eq("University of Bern")
-      expect(bibtex[:year]).to eq("2015")
-    end
-
-    it "keywords subject scheme" do
-      input = "https://doi.org/10.1594/pangaea.721193"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.1594/pangaea.721193")
-      expect(bibtex[:doi]).to eq("10.1594/pangaea.721193")
-      expect(bibtex[:keywords]).to start_with("Animalia, Bottles or small containers/Aquaria (<20 L), Calcification/Dissolution")
-      expect(bibtex[:year]).to eq("2007")
-      expect(bibtex[:copyright]).to eq("Creative Commons Attribution 3.0 Unported")
-    end
-
-    it "author is organization" do
-      input = fixture_path + 'gtex.xml'
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.25491/9hx8-ke93")
-      expect(bibtex[:author]).to eq("{The GTEx Consortium}")
-    end
-
-    it "dataset neurophysiology" do
-      input = fixture_path + 'datacite-schema-2.2.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      expect(subject.valid?).to be true
-      bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
-      expect(bibtex[:bibtex_type].to_s).to eq("misc")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.6080/k0f769gp")
-      expect(bibtex[:doi]).to eq("10.6080/k0f769gp")
-      expect(bibtex[:title]).to eq("Single-unit recordings from two auditory areas in male zebra finches")
-      expect(bibtex[:author]).to eq("Theunissen, Frederic E. and Hauber, ME and Woolley, Sarah M. N. and Gill, Patrick and Shaevitz, SS and Amin, Noopur and Hsu, A and Singh, NC and Grace, GA and Fremouw, Thane and Zhang, Junli and Cassey, P and Doupe, AJ and David, SV and Vinje, WE")
-      expect(bibtex[:publisher]).to eq("CRCNS.org")
-      expect(bibtex[:keywords]).to eq("Neuroscience, Electrophysiology, auditory area, avian (zebra finch)")
-      expect(bibtex[:year]).to eq("2009")
-    end
-  end
-end

data/spec/writers/citation_writer_spec.rb

@@ -1,61 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as citation" do
-    it "Journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.style).to eq("apa")
-      expect(subject.locale).to eq("en-US")
-      expect(subject.citation).to eq("Sankar, M., Nieminen, K., Ragni, L., Xenarios, I., &amp; Hardtke, C. S. (2014). Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth. <i>ELife</i>, <i>3</i>, e01567. https://doi.org/10.7554/elife.01567")
-    end
-
-    it "Journal article vancouver style" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref", style: "vancouver", locale: "en-US")
-      expect(subject.style).to eq("vancouver")
-      expect(subject.locale).to eq("en-US")
-      expect(subject.citation).to eq("Sankar M, Nieminen K, Ragni L, Xenarios I, Hardtke CS. Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth. eLife [Internet]. 2014Feb11;3:e01567. Available from: https://elifesciences.org/articles/01567")
-    end
-
-    it "Dataset" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-
-      expect(subject.citation).to eq("Ollomo, B., Durand, P., Prugnolle, F., Douzery, E. J. P., Arnathau, C., Nkoghe, D., Leroy, E., &amp; Renaud, F. (2011). <i>Data from: A new malaria agent in African hominids.</i> (Version 1) [Data set]. Dryad. https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "Missing author" do
-      input = "https://doi.org/10.3390/publications6020015"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.citation).to eq("Alexander Kohls, &amp; Salvatore Mele. (2018). Converting the Literature of a Scientific Field to Open Access through Global Collaboration: The Experience of SCOAP3 in Particle Physics. <i>Publications</i>, <i>6</i>(2), 15. https://doi.org/10.3390/publications6020015")
-    end
-
-    it "software w/version" do
-      input = "https://doi.org/10.5281/zenodo.2598836"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.style).to eq("apa")
-      expect(subject.locale).to eq("en-US")
-      expect(subject.citation).to eq("Lab for Exosphere and Near Space Environment Studies. (2019). <i>lenses-lab/LYAO_RT-2018JA026426: Original Release</i> (Version 1.0.0) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.2598836")
-    end
-
-    it "interactive resource without dates" do
-      input = "https://doi.org/10.34747/g6yb-3412"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.style).to eq("apa")
-      expect(subject.locale).to eq("en-US")
-      expect(subject.citation).to eq("Clark, D. (2019). <i>Exploring the \"Many analysts, one dataset\" project from COS</i>. Gigantum, Inc. https://doi.org/10.34747/g6yb-3412")
-    end
-
-    it "journal article with container title" do
-      input = fixture_path + "datacite_journal_article.xml"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.types["citeproc"]).to eq("article-journal")
-      expect(subject.style).to eq("apa")
-      expect(subject.locale).to eq("en-US")
-      expect(subject.citation).to eq('Feldman, H. L. (1995). Science and Uncertainty in Mass Exposure Litigation. <i>Texas Law Review</i>. https://doi.org/10.60843/5egy-vc42')
-    end
-  end
-end

data/spec/writers/citeproc_writer_spec.rb

@@ -1,299 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as citeproc" do
-    it "Dataset" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("dataset")
-      expect(json["id"]).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(json["DOI"]).to eq("10.5061/dryad.8515")
-      expect(json["title"]).to eq("Data from: A new malaria agent in African hominids.")
-      expect(json["author"]).to eq([{"family"=>"Ollomo", "given"=>"Benjamin"},
-                                    {"family"=>"Durand", "given"=>"Patrick"},
-                                    {"family"=>"Prugnolle", "given"=>"Franck"},
-                                    {"family"=>"Douzery", "given"=>"Emmanuel J. P."},
-                                    {"family"=>"Arnathau", "given"=>"Céline"},
-                                    {"family"=>"Nkoghe", "given"=>"Dieudonné"},
-                                    {"family"=>"Leroy", "given"=>"Eric"},
-                                    {"family"=>"Renaud", "given"=>"François"}])
-      expect(json["publisher"]).to eq("Dryad")
-      expect(json["issued"]).to eq("date-parts" => [[2011]])
-      expect(json["submitted"]).to be_nil
-      expect(json["copyright"]).to eq("Creative Commons Zero v1.0 Universal")
-    end
-
-    it "BlogPosting" do
-      input = "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
-      expect(json["title"]).to eq("Eating your own Dog Food")
-      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
-      expect(json["publisher"]).to eq("DataCite")
-      expect(json["issued"]).to eq("date-parts"=>[[2016, 12, 20]])
-    end
-
-    it "BlogPosting DataCite JSON" do
-      input = fixture_path + "datacite.json"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
-      expect(json["title"]).to eq("Eating your own Dog Food")
-      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
-      expect(json["publisher"]).to eq("DataCite")
-      expect(json["issued"]).to eq("date-parts" => [[2016, 12, 20]])
-    end
-
-    it "BlogPosting schema.org" do
-      input = "https://blog.datacite.org/eating-your-own-dog-food/"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("post-weblog")
-      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
-      expect(json["title"]).to eq("Eating your own Dog Food")
-      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
-      expect(json["publisher"]).to eq("DataCite")
-      expect(json["issued"]).to eq("date-parts" => [[2016, 12, 20]])
-    end
-
-    it "Another dataset" do
-      input = "10.26301/qdpd-2250"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("dataset")
-      expect(json["id"]).to eq("https://doi.org/10.26301/qdpd-2250")
-      expect(json["DOI"]).to eq("10.26301/qdpd-2250")
-      expect(json["title"]).to eq("USS Pampanito Submarine")
-      expect(json["author"]).to eq([{"literal"=>"CyArk"}])
-      expect(json["publisher"]).to eq("Open Heritage")
-      expect(json["issued"]).to eq("date-parts"=>[[2020]])
-    end
-
-    it "journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.7554/elife.01567")
-      expect(json["DOI"]).to eq("10.7554/elife.01567")
-      expect(json["title"]).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(json["author"]).to eq([{"family"=>"Sankar", "given"=>"Martial"},
-                                    {"family"=>"Nieminen", "given"=>"Kaisa"},
-                                    {"family"=>"Ragni", "given"=>"Laura"},
-                                    {"family"=>"Xenarios", "given"=>"Ioannis"},
-                                    {"family"=>"Hardtke", "given"=>"Christian S"}])
-      expect(json["container-title"]).to eq("eLife")
-      expect(json["volume"]).to eq("3")
-      expect(json["issued"]).to eq("date-parts" => [[2014, 2, 11]])
-      expect(json["copyright"]).to eq("Creative Commons Attribution 3.0 Unported")
-    end
-
-    it "software" do
-      input = "https://doi.org/10.6084/m9.figshare.4906367.v1"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article")
-      expect(json["DOI"]).to eq("10.6084/m9.figshare.4906367.v1")
-      expect(json["title"]).to eq("Scimag catalogue of LibGen as of January 1st, 2014")
-      expect(json["copyright"]).to eq("Creative Commons Zero v1.0 Universal")
-    end
-
-    it "software w/version" do
-      input = "https://doi.org/10.5281/zenodo.2598836"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("book")
-      expect(json["DOI"]).to eq("10.5281/zenodo.2598836")
-      expect(json["version"]).to eq("1.0.0")
-      expect(json["copyright"]).to eq("Open Access")
-    end
-
-    it "software w/version from datacite_json" do
-      input = fixture_path + "datacite_software_version.json"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("book")
-      expect(json["DOI"]).to eq("10.5281/ZENODO.2598836")
-      expect(json["version"]).to eq("1.0.0")
-      expect(json["copyright"]).to eq("Open Access")
-    end
-
-    it "multiple abstracts" do
-      input = "https://doi.org/10.12763/ona1045"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["DOI"]).to eq("10.12763/ona1045")
-      expect(json["abstract"]).to eq("Le code est accompagné de commentaires de F. A. Vogel, qui signe l'épitre dédicatoire")
-    end
-
-    it "with pages" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.1155/2012/291294")
-      expect(json["DOI"]).to eq("10.1155/2012/291294")
-      expect(json["title"]).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
-      expect(json["author"]).to eq([{"family"=>"Thanassi", "given"=>"Wendy"},
-                                    {"family"=>"Noda", "given"=>"Art"},
-                                    {"family"=>"Hernandez", "given"=>"Beatriz"},
-                                    {"family"=>"Newell", "given"=>"Jeffery"},
-                                    {"family"=>"Terpeluk", "given"=>"Paul"},
-                                    {"family"=>"Marder", "given"=>"David"},
-                                    {"family"=>"Yesavage", "given"=>"Jerome A."}])
-      expect(json["container-title"]).to eq("Pulmonary Medicine")
-      expect(json["volume"]).to eq("2012")
-      expect(json["page"]).to eq("1-7")
-      expect(json["issued"]).to eq("date-parts"=>[[2012]])
-      expect(json["copyright"]).to eq("Creative Commons Attribution 3.0 Unported")
-    end
-
-    it "with only first page" do
-      input = "https://doi.org/10.1371/journal.pone.0214986"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.1371/journal.pone.0214986")
-      expect(json["DOI"]).to eq("10.1371/journal.pone.0214986")
-      expect(json["title"]).to eq("River metrics by the public, for the public")
-      expect(json["author"]).to eq([{"family"=>"Weber", "given"=>"Matthew A."}, {"family"=>"Ringold", "given"=>"Paul L."}])
-      expect(json["container-title"]).to eq("PLOS ONE")
-      expect(json["volume"]).to eq("14")
-      expect(json["page"]).to eq("e0214986")
-      expect(json["issued"]).to eq("date-parts"=>[[2019, 5, 8]])
-      expect(json["copyright"]).to eq("Creative Commons Zero v1.0 Universal")
-    end
-
-    it "missing creator" do
-      input = "https://doi.org/10.3390/publications6020015"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.3390/publications6020015")
-      expect(json["DOI"]).to eq("10.3390/publications6020015")
-      expect(json["title"]).to eq("Converting the Literature of a Scientific Field to Open Access through Global Collaboration: The Experience of SCOAP3 in Particle Physics")
-      expect(json["author"]).to eq([{"literal"=>"Alexander Kohls"}, {"literal"=>"Salvatore Mele"}])
-      expect(json["container-title"]).to eq("Publications")
-      expect(json["publisher"]).to eq("MDPI AG")
-      expect(json["page"]).to eq("15")
-      expect(json["issued"]).to eq("date-parts"=>[[2018, 4, 9]])
-      expect(json["copyright"]).to eq("Creative Commons Attribution 4.0 International")
-    end
-
-    it "container title" do
-      input = "https://doi.org/10.6102/ZIS146"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.6102/zis146")
-      expect(json["DOI"]).to eq("10.6102/zis146")
-      expect(json["title"]).to eq("Deutsche Version der Positive and Negative Affect Schedule (PANAS)")
-      expect(json["author"]).to eq([{"family"=>"Janke", "given"=>"S."},
-                                    {"family"=>"Glöckner-Rist", "given"=>"A."}])
-      expect(json["container-title"]).to eq("Zusammenstellung sozialwissenschaftlicher Items und Skalen (ZIS)")
-      expect(json["issued"]).to eq("date-parts" => [[2012]])
-    end
-
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.7554/elife.01567")
-      expect(json["DOI"]).to eq("10.7554/elife.01567")
-      expect(json["URL"]).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
-      expect(json["title"]).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(json["author"]).to eq([{"family"=>"Sankar", "given"=>"Martial"},
-                                    {"family"=>"Nieminen", "given"=>"Kaisa"},
-                                    {"family"=>"Ragni", "given"=>"Laura"},
-                                    {"family"=>"Xenarios", "given"=>"Ioannis"},
-                                    {"family"=>"Hardtke", "given"=>"Christian S"}])
-      expect(json["container-title"]).to eq("eLife")
-      expect(json["issued"]).to eq("date-parts" => [[2014]])
-    end
-
-    it "author is organization" do
-      input = fixture_path + 'gtex.xml'
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["id"]).to eq("https://doi.org/10.25491/9hx8-ke93")
-      expect(json["author"]).to eq([{"literal"=>"The GTEx Consortium"}])
-    end
-
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.5438/qeg0-3gm3")
-      expect(json["DOI"]).to eq("10.5438/qeg0-3gm3")
-      expect(json["title"]).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
-      expect(json["publisher"]).to eq("DataCite")
-      expect(json["issued"]).to eq("date-parts" => [[2017, 2, 24]])
-      expect(json["copyright"]).to eq("MIT License")
-    end
-
-    it "keywords subject scheme" do
-      input = "https://doi.org/10.1594/pangaea.721193"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("dataset")
-      expect(json["id"]).to eq("https://doi.org/10.1594/pangaea.721193")
-      expect(json["DOI"]).to eq("10.1594/pangaea.721193")
-      expect(json["categories"]).to include("Animalia", "Bottles or small containers/Aquaria (<20 L)")
-      expect(json["copyright"]).to eq("Creative Commons Attribution 3.0 Unported")
-    end
-
-    it "organization author" do
-      input = "https://doi.org/10.1186/s13742-015-0103-4"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article-journal")
-      expect(json["id"]).to eq("https://doi.org/10.1186/s13742-015-0103-4")
-      expect(json["DOI"]).to eq("10.1186/s13742-015-0103-4")
-      expect(json["author"]).to eq([{"family"=>"Liu", "given"=>"Siyang"},
-        {"family"=>"Huang", "given"=>"Shujia"},
-        {"family"=>"Rao", "given"=>"Junhua"},
-        {"family"=>"Ye", "given"=>"Weijian"},
-        {"family"=>"Krogh", "given"=>"Anders"},
-        {"family"=>"Wang", "given"=>"Jun"},
-        {"literal"=>"The Genome Denmark Consortium"}])
-      expect(json["container-title"]).to eq("GigaScience")
-    end
-
-    it "interactive resource without dates" do
-      input = "https://doi.org/10.34747/g6yb-3412"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.citeproc)
-      expect(json["type"]).to eq("article")
-      expect(json["DOI"]).to eq("10.34747/g6yb-3412")
-      expect(json["issued"]).to eq("date-parts"=>[[2019]])
-    end
-
-    it "from Schema 4.6 with Translator contributor" do
-      input = fixture_path + 'datacite-example-full-v4.6.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.citeproc)
-      expect(json["translator"]).to eq([
-        {"family"=>"Doe", "given"=>"Jane"},
-      ])
-    end
-  end
-end

data/spec/writers/codemeta_writer_spec.rb

@@ -1,45 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as codemeta" do
-    # it "SoftwareSourceCode DataCite JSON" do
-    #   input = fixture_path + "datacite_software.json"
-    #   subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
-    #   expect(subject.valid?).to be true
-    #   json = JSON.parse(subject.codemeta)
-    #   expect(json["@context"]).to eq("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
-    #   expect(json["@id"]).to eq("https://doi.org/10.5063/f1m61h5x")
-    #   expect(json["@type"]).to eq("SoftwareSourceCode")
-    #   expect(json["identifier"]).to eq("https://doi.org/10.5063/f1m61h5x")
-    #   expect(json["agents"]).to eq("type"=>"Person", "name"=>"Matthew B. Jones", "givenName"=>"Matthew B.", "familyName"=>"Jones")
-    #   expect(json["title"]).to eq("dataone: R interface to the DataONE network of data repositories")
-    #   expect(json["datePublished"]).to eq("2016")
-    #   expect(json["publisher"]).to eq("KNB Data Repository")
-    # end
-
-    it "SoftwareSourceCode DataCite" do
-      input = "https://doi.org/10.5063/f1m61h5x"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.codemeta)
-      expect(json["@context"]).to eq("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
-      expect(json["@id"]).to eq("https://doi.org/10.5063/f1m61h5x")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["authors"]).to eq([{"name"=>"Jones, Matthew B.; Slaughter, Peter; Nahf, Rob; Boettiger, Carl ; Jones, Chris; Read, Jordan; Walker, Lauren; Hart, Edmund; Chamberlain, Scott", "nameIdentifiers" => [], "affiliation" => []}])
-      expect(json["name"]).to eq("dataone: R interface to the DataONE network of data repositories")
-      expect(json["datePublished"]).to eq("2016")
-      expect(json["publisher"]).to eq("KNB Data Repository")
-    end
-
-    it "SoftwareSourceCode DataCite check codemeta v2" do
-      input = "https://doi.org/10.5063/f1m61h5x"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      json = JSON.parse(subject.codemeta)
-      expect(json["agents"]).to  be_nil
-      expect(json["title"]).to  be_nil
-    end
-  end
-end