bolognese 2.3.2 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (579) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/ci.yml +1 -1
  3. data/.github/workflows/release.yml +2 -2
  4. data/Gemfile +1 -1
  5. data/Gemfile.lock +196 -164
  6. data/README.md +1 -1
  7. data/bolognese.gemspec +30 -37
  8. data/lib/bolognese/author_utils.rb +1 -4
  9. data/lib/bolognese/citeproc_extensions.rb +48 -0
  10. data/lib/bolognese/datacite_utils.rb +17 -7
  11. data/lib/bolognese/metadata.rb +8 -5
  12. data/lib/bolognese/metadata_utils.rb +18 -4
  13. data/lib/bolognese/readers/crossref_reader.rb +17 -5
  14. data/lib/bolognese/readers/datacite_reader.rb +11 -34
  15. data/lib/bolognese/utils.rb +79 -12
  16. data/lib/bolognese/version.rb +1 -1
  17. data/lib/bolognese/writers/csv_writer.rb +3 -5
  18. data/lib/bolognese.rb +1 -4
  19. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +1 -1
  20. data/resources/kernel-4/include/datacite-dateType-v4.xsd +1 -1
  21. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +3 -1
  22. data/resources/kernel-4/include/datacite-relationType-v4.xsd +4 -2
  23. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +4 -1
  24. data/resources/kernel-4/metadata.xsd +4 -1
  25. data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
  26. data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
  27. data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
  28. data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
  29. data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
  30. data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
  31. data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  32. data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
  33. data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
  34. data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
  35. data/resources/kernel-4.7/include/xml.xsd +286 -0
  36. data/resources/kernel-4.7/metadata.xsd +715 -0
  37. metadata +129 -734
  38. data/spec/array_spec.rb +0 -22
  39. data/spec/author_utils_spec.rb +0 -259
  40. data/spec/cli_spec.rb +0 -226
  41. data/spec/datacite_utils_spec.rb +0 -315
  42. data/spec/doi_utils_spec.rb +0 -314
  43. data/spec/find_from_format_spec.rb +0 -114
  44. data/spec/fixtures/aida.json +0 -82
  45. data/spec/fixtures/cgimp_package.json +0 -18
  46. data/spec/fixtures/cit_package.json +0 -19
  47. data/spec/fixtures/citeproc-no-author.json +0 -26
  48. data/spec/fixtures/citeproc-no-categories.json +0 -21
  49. data/spec/fixtures/citeproc.json +0 -36
  50. data/spec/fixtures/codemeta.json +0 -86
  51. data/spec/fixtures/codemeta_v2.json +0 -86
  52. data/spec/fixtures/crosscite.json +0 -63
  53. data/spec/fixtures/crossref.bib +0 -14
  54. data/spec/fixtures/crossref.ris +0 -15
  55. data/spec/fixtures/crossref.xml +0 -606
  56. data/spec/fixtures/crossref_schema_4.6_values.xml +0 -183
  57. data/spec/fixtures/datacite-empty-sizes.xml +0 -57
  58. data/spec/fixtures/datacite-example-ROR-nameIdentifiers.xml +0 -125
  59. data/spec/fixtures/datacite-example-affiliation.xml +0 -114
  60. data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +0 -29
  61. data/spec/fixtures/datacite-example-complicated-tba.xml +0 -56
  62. data/spec/fixtures/datacite-example-complicated-v3.0.xml +0 -48
  63. data/spec/fixtures/datacite-example-complicated-v4.0.xml +0 -54
  64. data/spec/fixtures/datacite-example-complicated-v4.1.xml +0 -57
  65. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +0 -56
  66. data/spec/fixtures/datacite-example-escaped-text.xml +0 -56
  67. data/spec/fixtures/datacite-example-full-v4.4.xml +0 -114
  68. data/spec/fixtures/datacite-example-full-v4.5.xml +0 -255
  69. data/spec/fixtures/datacite-example-full-v4.6.xml +0 -114
  70. data/spec/fixtures/datacite-example-geolocation-2.xml +0 -141
  71. data/spec/fixtures/datacite-example-geolocation.xml +0 -66
  72. data/spec/fixtures/datacite-example-nameIdentifier-with-schemeURI.xml +0 -94
  73. data/spec/fixtures/datacite-example-polygon-v4.1.xml +0 -163
  74. data/spec/fixtures/datacite-example-relateditems-with-attributes.xml +0 -61
  75. data/spec/fixtures/datacite-example-relateditems.xml +0 -61
  76. data/spec/fixtures/datacite-example-xs-string.xml +0 -28
  77. data/spec/fixtures/datacite-formats-with-xs.xml +0 -22
  78. data/spec/fixtures/datacite-funderIdentifier.xml +0 -98
  79. data/spec/fixtures/datacite-geolocation-empty.xml +0 -159
  80. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +0 -76
  81. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +0 -52
  82. data/spec/fixtures/datacite-multiple-language.xml +0 -38
  83. data/spec/fixtures/datacite-multiple-rights.xml +0 -59
  84. data/spec/fixtures/datacite-schema-2.2.xml +0 -80
  85. data/spec/fixtures/datacite-seriesinformation.xml +0 -46
  86. data/spec/fixtures/datacite-space-in-sizes.xml +0 -52
  87. data/spec/fixtures/datacite-xml-lang.xml +0 -51
  88. data/spec/fixtures/datacite.json +0 -89
  89. data/spec/fixtures/datacite.xml +0 -40
  90. data/spec/fixtures/datacite_blank_name_identifier.xml +0 -22
  91. data/spec/fixtures/datacite_blank_publisher.xml +0 -18
  92. data/spec/fixtures/datacite_dataset.xml +0 -58
  93. data/spec/fixtures/datacite_journal_article.xml +0 -64
  94. data/spec/fixtures/datacite_malformed_creator.xml +0 -52
  95. data/spec/fixtures/datacite_missing_creator.xml +0 -33
  96. data/spec/fixtures/datacite_schema_3.xml +0 -58
  97. data/spec/fixtures/datacite_software.json +0 -21
  98. data/spec/fixtures/datacite_software_missing_comma.json +0 -18
  99. data/spec/fixtures/datacite_software_overlapping_keys.json +0 -18
  100. data/spec/fixtures/datacite_software_version.json +0 -74
  101. data/spec/fixtures/edam_package.json +0 -12
  102. data/spec/fixtures/funding_reference.xml +0 -53
  103. data/spec/fixtures/gtex.xml +0 -71
  104. data/spec/fixtures/maremma/codemeta.json +0 -36
  105. data/spec/fixtures/nist.xml +0 -35
  106. data/spec/fixtures/ns0.xml +0 -2
  107. data/spec/fixtures/pure.bib +0 -14
  108. data/spec/fixtures/pure.ris +0 -15
  109. data/spec/fixtures/pure.xml +0 -188
  110. data/spec/fixtures/ris_bug.ris +0 -9
  111. data/spec/fixtures/schema_4.0.xml +0 -140
  112. data/spec/fixtures/schema_org.json +0 -50
  113. data/spec/fixtures/schema_org_4.6_attributes.json +0 -108
  114. data/spec/fixtures/schema_org_geolocation.json +0 -82
  115. data/spec/fixtures/schema_org_geoshape.json +0 -550
  116. data/spec/fixtures/schema_org_gtex.json +0 -75
  117. data/spec/fixtures/schema_org_list.json +0 -12623
  118. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +0 -25
  119. data/spec/fixtures/schema_org_topmed.json +0 -53
  120. data/spec/fixtures/schema_org_type_as_array.json +0 -41
  121. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/default.yml +0 -106
  122. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_bibtex.yml +0 -106
  123. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_citation.yml +0 -106
  124. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_crossref.yml +0 -106
  125. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_datacite.yml +0 -106
  126. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_jats.yml +0 -106
  127. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_schema_org.yml +0 -106
  128. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/default.yml +0 -106
  129. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_bibtex.yml +0 -106
  130. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_citation.yml +0 -106
  131. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite.yml +0 -106
  132. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite_json.yml +0 -106
  133. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_jats.yml +0 -106
  134. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_schema_org.yml +0 -106
  135. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/default.yml +0 -117
  136. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_datacite.yml +0 -117
  137. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_schema_org.yml +0 -115
  138. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/crossref.yml +0 -54
  139. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/datacite.yml +0 -54
  140. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/jalc.yml +0 -54
  141. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/kisti.yml +0 -54
  142. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/medra.yml +0 -54
  143. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/op.yml +0 -54
  144. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/author.yml +0 -48
  145. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/no_author.yml +0 -48
  146. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/single_author.yml +0 -48
  147. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/with_organization.yml +0 -48
  148. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_state.yml +0 -106
  149. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_title.yml +0 -106
  150. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_description.yml +0 -55
  151. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_identifiers.yml +0 -55
  152. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license.yml +0 -55
  153. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_name.yml +0 -55
  154. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_url.yml +0 -55
  155. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_state.yml +0 -55
  156. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/validates_against_schema.yml +0 -55
  157. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +0 -55
  158. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi.yml +0 -48
  159. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi_with_protocol.yml +0 -48
  160. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/dx_doi_org_url.yml +0 -48
  161. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/force_test_resolver.yml +0 -48
  162. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/https_url.yml +0 -48
  163. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver.yml +0 -48
  164. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver_http.yml +0 -48
  165. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi.yml +0 -48
  166. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi_with_special_characters.yml +0 -48
  167. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/not_a_doi.yml +0 -48
  168. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/sandbox_url.yml +0 -48
  169. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/url.yml +0 -48
  170. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/crossref.yml +0 -99
  171. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/datacite.yml +0 -99
  172. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/jalc.yml +0 -99
  173. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/kisti.yml +0 -99
  174. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/medra.yml +0 -99
  175. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_a_valid_prefix.yml +0 -48
  176. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_found.yml +0 -99
  177. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/op.yml +0 -99
  178. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi.yml +0 -48
  179. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi_with_protocol.yml +0 -48
  180. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/dx_doi_org_url.yml +0 -48
  181. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/force_stage_resolver.yml +0 -48
  182. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/https_url.yml +0 -48
  183. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver.yml +0 -48
  184. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver_http.yml +0 -48
  185. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref.yml +0 -157
  186. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +0 -157
  187. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite.yml +0 -157
  188. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite_doi_http.yml +0 -157
  189. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/github.yml +0 -106
  190. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/orcid.yml +0 -106
  191. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/schema_org.yml +0 -106
  192. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +0 -157
  193. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/bibtex.yml +0 -106
  194. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/citeproc.yml +0 -106
  195. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/codemeta.yml +0 -106
  196. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crosscite.yml +0 -106
  197. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crossref.yml +0 -106
  198. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite.yml +0 -106
  199. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite_json.yml +0 -106
  200. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/ris.yml +0 -106
  201. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/schema_org.yml +0 -106
  202. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml +0 -106
  203. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_match.yml +0 -48
  204. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +0 -48
  205. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_match.yml +0 -48
  206. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_no_match.yml +0 -48
  207. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_for_match.yml +0 -48
  208. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_match.yml +0 -48
  209. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_no_match.yml +0 -48
  210. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml +0 -48
  211. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/with_affiliation.yml +0 -48
  212. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/without_affiliation.yml +0 -48
  213. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml +0 -75
  214. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml +0 -75
  215. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +0 -103
  216. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +0 -102
  217. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +0 -106
  218. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/JaLC.yml +0 -137
  219. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/KISTI.yml +0 -158
  220. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/OP.yml +0 -100
  221. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml +0 -101
  222. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book.yml +0 -138
  223. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book_chapter.yml +0 -100
  224. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/article_id_as_page_number.yml +0 -101
  225. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/author_literal.yml +0 -108
  226. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book.yml +0 -99
  227. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book_chapter.yml +0 -170
  228. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +0 -99
  229. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book_oup.yml +0 -98
  230. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/component.yml +0 -120
  231. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset.yml +0 -130
  232. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset_usda.yml +0 -143
  233. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/date_in_future.yml +0 -101
  234. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml +0 -129
  235. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/empty_given_name.yml +0 -101
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  422. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_4.yml +0 -48
  423. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_5.yml +0 -48
  424. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_6.yml +0 -48
  425. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_7.yml +0 -48
  426. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_8.yml +0 -48
  427. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_9.yml +0 -48
  428. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi.yml +0 -48
  429. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi_without_prefix.yml +0 -48
  430. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/non-funder_doi.yml +0 -48
  431. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml +0 -48
  432. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_https.yml +0 -48
  433. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml +0 -48
  434. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox.yml +0 -65
  435. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox_https.yml +0 -65
  436. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml +0 -48
  437. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml +0 -48
  438. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_www.yml +0 -48
  439. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme.yml +0 -48
  440. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_https.yml +0 -48
  441. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_trailing_slash.yml +0 -48
  442. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_www.yml +0 -48
  443. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi.yml +0 -48
  444. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_as_url.yml +0 -48
  445. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_with_protocol.yml +0 -48
  446. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/only_prefix.yml +0 -48
  447. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/DOI.yml +0 -48
  448. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/ISSN.yml +0 -48
  449. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/URL.yml +0 -48
  450. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/string.yml +0 -48
  451. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/BlogPosting.yml +0 -55
  452. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/Dataset.yml +0 -55
  453. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +0 -114
  454. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/climate_data.yml +0 -55
  455. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/from_schema_org.yml +0 -115
  456. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +0 -55
  457. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/maremma.yml +0 -75
  458. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/text.yml +0 -55
  459. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_data_citation.yml +0 -55
  460. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_pages.yml +0 -52
  461. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Dataset.yml +0 -55
  462. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article.yml +0 -55
  463. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +0 -55
  464. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Missing_author.yml +0 -49
  465. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +0 -55
  466. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/software_w/version.yml +0 -55
  467. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Another_dataset.yml +0 -55
  468. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting.yml +0 -55
  469. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting_schema_org.yml +0 -115
  470. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Dataset.yml +0 -55
  471. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/container_title.yml +0 -55
  472. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/interactive_resource_without_dates.yml +0 -55
  473. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/journal_article.yml +0 -55
  474. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/keywords_subject_scheme.yml +0 -55
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  476. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/missing_creator.yml +0 -49
  477. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/multiple_abstracts.yml +0 -55
  478. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/organization_author.yml +0 -52
  479. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/software.yml +0 -55
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  481. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_only_first_page.yml +0 -50
  482. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_pages.yml +0 -52
  483. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +0 -55
  484. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +0 -55
  485. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/datacite_database_attributes.yml +0 -55
  486. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/maremma.yml +0 -75
  487. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_ORCID_ID.yml +0 -52
  488. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_data_citation.yml +0 -55
  489. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_data_citation_schema_org.yml +0 -117
  490. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/from_DataCite.yml +0 -55
  491. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/climate_data.yml +0 -55
  492. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/maremma.yml +0 -75
  493. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/text.yml +0 -55
  494. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_data_citation.yml +0 -55
  495. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_pages.yml +0 -52
  496. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/maremma.yml +0 -75
  497. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_ORCID_ID.yml +0 -52
  498. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation.yml +0 -55
  499. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation_schema_org.yml +0 -117
  500. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/DOI_not_found.yml +0 -51
  501. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Dataset_in_schema_4_0.yml +0 -55
  502. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru.yml +0 -55
  503. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru_with_doi_in_options.yml +0 -55
  504. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/maremma.yml +0 -75
  505. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_ORCID_ID.yml +0 -52
  506. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation.yml +0 -55
  507. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation_schema_org.yml +0 -115
  508. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_editor.yml +0 -49
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  510. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +0 -55
  511. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +0 -55
  512. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/book_chapter.yml +0 -88
  513. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/interactive_resource_without_dates.yml +0 -55
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  520. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_rdf_xml/BlogPosting_schema_org.yml +0 -117
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  524. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/BlogPosting.yml +0 -55
  525. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +0 -117
  526. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/Dataset.yml +0 -55
  527. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/alternate_name.yml +0 -55
  528. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/journal_article.yml +0 -55
  529. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +0 -55
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  531. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/with_pages.yml +0 -52
  532. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding.yml +0 -106
  533. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +0 -106
  534. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +0 -55
  535. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +0 -106
  536. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +0 -106
  537. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +0 -55
  538. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +0 -55
  539. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/data_catalog.yml +0 -55
  540. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/geo_location_box.yml +0 -55
  541. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +0 -55
  542. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/journal_article.yml +0 -55
  543. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +0 -75
  544. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/series_information.yml +0 -55
  545. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme.yml +0 -55
  546. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +0 -55
  547. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting.yml +0 -55
  548. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +0 -117
  549. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml +0 -55
  550. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/journal_article.yml +0 -55
  551. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/with_pages.yml +0 -52
  552. data/spec/fixtures/vivli.xml +0 -1
  553. data/spec/metadata_spec.rb +0 -165
  554. data/spec/readers/bibtex_reader_spec.rb +0 -65
  555. data/spec/readers/citeproc_reader_spec.rb +0 -65
  556. data/spec/readers/codemeta_reader_spec.rb +0 -138
  557. data/spec/readers/crosscite_reader_spec.rb +0 -43
  558. data/spec/readers/crossref_reader_spec.rb +0 -1133
  559. data/spec/readers/datacite_json_reader_spec.rb +0 -82
  560. data/spec/readers/datacite_reader_spec.rb +0 -1853
  561. data/spec/readers/npm_reader_spec.rb +0 -68
  562. data/spec/readers/ris_reader_spec.rb +0 -78
  563. data/spec/readers/schema_org_reader_spec.rb +0 -371
  564. data/spec/spec_helper.rb +0 -95
  565. data/spec/utils_spec.rb +0 -666
  566. data/spec/writers/bibtex_writer_spec.rb +0 -195
  567. data/spec/writers/citation_writer_spec.rb +0 -61
  568. data/spec/writers/citeproc_writer_spec.rb +0 -299
  569. data/spec/writers/codemeta_writer_spec.rb +0 -45
  570. data/spec/writers/crosscite_writer_spec.rb +0 -129
  571. data/spec/writers/crossref_writer_spec.rb +0 -21
  572. data/spec/writers/csv_writer_spec.rb +0 -94
  573. data/spec/writers/datacite_json_writer_spec.rb +0 -112
  574. data/spec/writers/datacite_writer_spec.rb +0 -578
  575. data/spec/writers/jats_writer_spec.rb +0 -208
  576. data/spec/writers/rdf_xml_writer_spec.rb +0 -93
  577. data/spec/writers/ris_writer_spec.rb +0 -207
  578. data/spec/writers/schema_org_writer_spec.rb +0 -418
  579. data/spec/writers/turtle_writer_spec.rb +0 -102
data/spec/fixtures/datacite-example-relateditems.xml DELETED
@@ -1,61 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
3
- xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.4/metadata.xsd">
4
- <identifier identifierType="DOI">10.5072/example-full</identifier>
5
- <creators>
6
- <creator>
7
- <creatorName nameType="Personal">Hallett, Richard</creatorName>
8
- <givenName>Richard</givenName>
9
- <familyName>Hallett</familyName>
10
- </creator>
11
- </creators>
12
- <titles>
13
- <title xml:lang="en-US">Example for related items</title>
14
- </titles>
15
- <publisher xml:lang="en">DataCite</publisher>
16
- <publicationYear>2021</publicationYear>
17
- <dates>
18
- <date dateType="Updated" dateInformation="Updated with 4.4 properties">2021-01-26</date>
19
- </dates>
20
- <language>en-US</language>
21
- <resourceType resourceTypeGeneral="Software">XML</resourceType>
22
- <version>1</version>
23
- <descriptions>
24
- <description xml:lang="en-US" descriptionType="Abstract">A test example for related items</description>
25
- </descriptions>
26
- <relatedItems>
27
- <relatedItem relationType="IsPublishedIn" relatedItemType="Journal">
28
- <relatedItemIdentifier
29
- relatedItemIdentifierType="DOI"
30
- relatedMetadataScheme="citeproc+json"
31
- schemeURI="https://github.com/citation-style-language/schema/raw/master/csl-data.json"
32
- schemeType="URL">10.5072/john-smiths-1234</relatedItemIdentifier>
33
- <creators>
34
- <creator>
35
- <creatorName nameType="Personal">Smith, John</creatorName>
36
- <givenName>John</givenName>
37
- <familyName>Smith</familyName>
38
- </creator>
39
- </creators>
40
- <titles>
41
- <title>Understanding the fictional John Smith</title>
42
- <title titleType="Subtitle">A detailed look</title>
43
- </titles>
44
- <publicationYear>1776</publicationYear>
45
- <volume>776</volume>
46
- <issue>1</volume>
47
- <number numberType="Chapter">1</number>
48
- <firstPage>50</firstPage>
49
- <lastPage>60</lastPage>
50
- <publisher>Example Inc</publisher>
51
- <edition>1</edition>
52
- <contributors>
53
- <contributor contributorType="ProjectLeader">
54
- <contributorName>Richard, Hallett</contributorName>
55
- <givenName>Richard</givenName>
56
- <familyName>Hallett</familyName>
57
- </contributor>
58
- </contributors>
59
- </relatedItem>
60
- </relatedItems>
61
- </resource>
data/spec/fixtures/datacite-example-xs-string.xml DELETED
@@ -1,28 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
2
- <resource xmlns="http://datacite.org/schema/kernel-2.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-2.2 http://schema.datacite.org/meta/kernel-2.2/metadata.xsd"><identifier identifierType="DOI">10.4225/13/511C71F8612C3</identifier>
3
- <creators>
4
- <creator>
5
- <creatorName>Claire L O?Brien</creatorName>
6
- </creator>
7
- <creator>
8
- <creatorName>Gwen E Allison</creatorName>
9
- </creator>
10
- <creator>
11
- <creatorName>Florian Grimpen</creatorName>
12
- </creator>
13
- <creator>
14
- <creatorName>Paul Pavli</creatorName>
15
- </creator>
16
- </creators>
17
- <titles>
18
- <title>Impact of Colonoscopy Bowel Preparation on Intestinal Microbiota</title>
19
- </titles>
20
- <publisher>The Australian National University Data Commons</publisher>
21
- <publicationYear>2013</publicationYear>
22
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