bolognese 2.2.0 → 2.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (584) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/ci.yml +1 -1
  3. data/.github/workflows/release.yml +2 -2
  4. data/Gemfile +1 -1
  5. data/Gemfile.lock +196 -164
  6. data/README.md +1 -1
  7. data/bolognese.gemspec +30 -37
  8. data/lib/bolognese/author_utils.rb +1 -4
  9. data/lib/bolognese/datacite_utils.rb +17 -7
  10. data/lib/bolognese/metadata.rb +8 -5
  11. data/lib/bolognese/metadata_utils.rb +7 -1
  12. data/lib/bolognese/readers/citeproc_reader.rb +6 -0
  13. data/lib/bolognese/readers/crossref_reader.rb +50 -4
  14. data/lib/bolognese/readers/datacite_reader.rb +11 -34
  15. data/lib/bolognese/readers/schema_org_reader.rb +21 -2
  16. data/lib/bolognese/utils.rb +91 -19
  17. data/lib/bolognese/version.rb +1 -1
  18. data/lib/bolognese/writers/csv_writer.rb +3 -5
  19. data/lib/bolognese/writers/schema_org_writer.rb +4 -0
  20. data/lib/bolognese.rb +0 -4
  21. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +3 -1
  22. data/resources/kernel-4/include/datacite-dateType-v4.xsd +3 -1
  23. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +7 -2
  24. data/resources/kernel-4/include/datacite-relationType-v4.xsd +9 -3
  25. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +8 -1
  26. data/resources/kernel-4/include/datacite-titleType-v4.xsd +1 -1
  27. data/resources/kernel-4/metadata.xsd +5 -1
  28. data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
  29. data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
  30. data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
  31. data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
  32. data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
  33. data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
  34. data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
  35. data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
  36. data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
  37. data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
  38. data/resources/kernel-4.6/include/xml.xsd +286 -0
  39. data/resources/kernel-4.6/metadata.xsd +712 -0
  40. data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
  41. data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
  42. data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
  43. data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
  44. data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
  45. data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
  46. data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  47. data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
  48. data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
  49. data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
  50. data/resources/kernel-4.7/include/xml.xsd +286 -0
  51. data/resources/kernel-4.7/metadata.xsd +715 -0
  52. metadata +140 -724
  53. data/spec/array_spec.rb +0 -22
  54. data/spec/author_utils_spec.rb +0 -259
  55. data/spec/cli_spec.rb +0 -226
  56. data/spec/datacite_utils_spec.rb +0 -207
  57. data/spec/doi_utils_spec.rb +0 -314
  58. data/spec/find_from_format_spec.rb +0 -114
  59. data/spec/fixtures/aida.json +0 -82
  60. data/spec/fixtures/cgimp_package.json +0 -18
  61. data/spec/fixtures/cit_package.json +0 -19
  62. data/spec/fixtures/citeproc-no-author.json +0 -26
  63. data/spec/fixtures/citeproc-no-categories.json +0 -21
  64. data/spec/fixtures/citeproc.json +0 -32
  65. data/spec/fixtures/codemeta.json +0 -86
  66. data/spec/fixtures/codemeta_v2.json +0 -86
  67. data/spec/fixtures/crosscite.json +0 -63
  68. data/spec/fixtures/crossref.bib +0 -14
  69. data/spec/fixtures/crossref.ris +0 -15
  70. data/spec/fixtures/crossref.xml +0 -606
  71. data/spec/fixtures/datacite-empty-sizes.xml +0 -57
  72. data/spec/fixtures/datacite-example-ROR-nameIdentifiers.xml +0 -125
  73. data/spec/fixtures/datacite-example-affiliation.xml +0 -114
  74. data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +0 -29
  75. data/spec/fixtures/datacite-example-complicated-tba.xml +0 -56
  76. data/spec/fixtures/datacite-example-complicated-v3.0.xml +0 -48
  77. data/spec/fixtures/datacite-example-complicated-v4.0.xml +0 -54
  78. data/spec/fixtures/datacite-example-complicated-v4.1.xml +0 -57
  79. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +0 -56
  80. data/spec/fixtures/datacite-example-escaped-text.xml +0 -56
  81. data/spec/fixtures/datacite-example-full-v4.4.xml +0 -114
  82. data/spec/fixtures/datacite-example-full-v4.5.xml +0 -255
  83. data/spec/fixtures/datacite-example-geolocation-2.xml +0 -141
  84. data/spec/fixtures/datacite-example-geolocation.xml +0 -66
  85. data/spec/fixtures/datacite-example-nameIdentifier-with-schemeURI.xml +0 -94
  86. data/spec/fixtures/datacite-example-polygon-v4.1.xml +0 -163
  87. data/spec/fixtures/datacite-example-relateditems-with-attributes.xml +0 -61
  88. data/spec/fixtures/datacite-example-relateditems.xml +0 -61
  89. data/spec/fixtures/datacite-example-xs-string.xml +0 -28
  90. data/spec/fixtures/datacite-formats-with-xs.xml +0 -22
  91. data/spec/fixtures/datacite-funderIdentifier.xml +0 -98
  92. data/spec/fixtures/datacite-geolocation-empty.xml +0 -159
  93. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +0 -76
  94. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +0 -52
  95. data/spec/fixtures/datacite-multiple-language.xml +0 -38
  96. data/spec/fixtures/datacite-multiple-rights.xml +0 -59
  97. data/spec/fixtures/datacite-schema-2.2.xml +0 -80
  98. data/spec/fixtures/datacite-seriesinformation.xml +0 -46
  99. data/spec/fixtures/datacite-space-in-sizes.xml +0 -52
  100. data/spec/fixtures/datacite-xml-lang.xml +0 -51
  101. data/spec/fixtures/datacite.json +0 -89
  102. data/spec/fixtures/datacite.xml +0 -40
  103. data/spec/fixtures/datacite_blank_name_identifier.xml +0 -22
  104. data/spec/fixtures/datacite_blank_publisher.xml +0 -18
  105. data/spec/fixtures/datacite_dataset.xml +0 -58
  106. data/spec/fixtures/datacite_journal_article.xml +0 -64
  107. data/spec/fixtures/datacite_malformed_creator.xml +0 -52
  108. data/spec/fixtures/datacite_missing_creator.xml +0 -33
  109. data/spec/fixtures/datacite_schema_3.xml +0 -58
  110. data/spec/fixtures/datacite_software.json +0 -21
  111. data/spec/fixtures/datacite_software_missing_comma.json +0 -18
  112. data/spec/fixtures/datacite_software_overlapping_keys.json +0 -18
  113. data/spec/fixtures/datacite_software_version.json +0 -74
  114. data/spec/fixtures/edam_package.json +0 -12
  115. data/spec/fixtures/funding_reference.xml +0 -53
  116. data/spec/fixtures/gtex.xml +0 -71
  117. data/spec/fixtures/maremma/codemeta.json +0 -36
  118. data/spec/fixtures/nist.xml +0 -35
  119. data/spec/fixtures/ns0.xml +0 -2
  120. data/spec/fixtures/pure.bib +0 -14
  121. data/spec/fixtures/pure.ris +0 -15
  122. data/spec/fixtures/pure.xml +0 -188
  123. data/spec/fixtures/ris_bug.ris +0 -9
  124. data/spec/fixtures/schema_4.0.xml +0 -140
  125. data/spec/fixtures/schema_org.json +0 -50
  126. data/spec/fixtures/schema_org_geolocation.json +0 -82
  127. data/spec/fixtures/schema_org_geoshape.json +0 -550
  128. data/spec/fixtures/schema_org_gtex.json +0 -75
  129. data/spec/fixtures/schema_org_list.json +0 -12623
  130. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +0 -25
  131. data/spec/fixtures/schema_org_topmed.json +0 -53
  132. data/spec/fixtures/schema_org_type_as_array.json +0 -41
  133. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/default.yml +0 -106
  134. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_bibtex.yml +0 -106
  135. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_citation.yml +0 -106
  136. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_crossref.yml +0 -106
  137. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_datacite.yml +0 -106
  138. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_jats.yml +0 -106
  139. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_schema_org.yml +0 -106
  140. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/default.yml +0 -106
  141. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_bibtex.yml +0 -106
  142. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_citation.yml +0 -106
  143. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite.yml +0 -106
  144. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite_json.yml +0 -106
  145. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_jats.yml +0 -106
  146. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_schema_org.yml +0 -106
  147. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/default.yml +0 -117
  148. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_datacite.yml +0 -117
  149. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_schema_org.yml +0 -115
  150. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/crossref.yml +0 -54
  151. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/datacite.yml +0 -54
  152. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/jalc.yml +0 -54
  153. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/kisti.yml +0 -54
  154. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/medra.yml +0 -54
  155. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/op.yml +0 -54
  156. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/author.yml +0 -48
  157. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/no_author.yml +0 -48
  158. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/single_author.yml +0 -48
  159. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/with_organization.yml +0 -48
  160. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_state.yml +0 -106
  161. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_title.yml +0 -106
  162. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_description.yml +0 -55
  163. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_identifiers.yml +0 -55
  164. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license.yml +0 -55
  165. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_name.yml +0 -55
  166. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_url.yml +0 -55
  167. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_state.yml +0 -55
  168. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/validates_against_schema.yml +0 -55
  169. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +0 -55
  170. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi.yml +0 -48
  171. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi_with_protocol.yml +0 -48
  172. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/dx_doi_org_url.yml +0 -48
  173. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/force_test_resolver.yml +0 -48
  174. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/https_url.yml +0 -48
  175. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver.yml +0 -48
  176. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver_http.yml +0 -48
  177. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi.yml +0 -48
  178. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi_with_special_characters.yml +0 -48
  179. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/not_a_doi.yml +0 -48
  180. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/sandbox_url.yml +0 -48
  181. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/url.yml +0 -48
  182. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/crossref.yml +0 -99
  183. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/datacite.yml +0 -99
  184. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/jalc.yml +0 -99
  185. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/kisti.yml +0 -99
  186. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/medra.yml +0 -99
  187. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_a_valid_prefix.yml +0 -48
  188. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_found.yml +0 -99
  189. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/op.yml +0 -99
  190. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi.yml +0 -48
  191. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi_with_protocol.yml +0 -48
  192. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/dx_doi_org_url.yml +0 -48
  193. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/force_stage_resolver.yml +0 -48
  194. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/https_url.yml +0 -48
  195. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver.yml +0 -48
  196. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver_http.yml +0 -48
  197. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref.yml +0 -157
  198. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +0 -157
  199. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite.yml +0 -157
  200. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite_doi_http.yml +0 -157
  201. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/github.yml +0 -106
  202. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/orcid.yml +0 -106
  203. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/schema_org.yml +0 -106
  204. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +0 -157
  205. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/bibtex.yml +0 -106
  206. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/citeproc.yml +0 -106
  207. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/codemeta.yml +0 -106
  208. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crosscite.yml +0 -106
  209. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crossref.yml +0 -106
  210. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite.yml +0 -106
  211. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite_json.yml +0 -106
  212. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/ris.yml +0 -106
  213. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/schema_org.yml +0 -106
  214. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml +0 -106
  215. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_match.yml +0 -48
  216. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +0 -48
  217. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_match.yml +0 -48
  218. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_no_match.yml +0 -48
  219. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_for_match.yml +0 -48
  220. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_match.yml +0 -48
  221. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_no_match.yml +0 -48
  222. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml +0 -48
  223. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/with_affiliation.yml +0 -48
  224. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/without_affiliation.yml +0 -48
  225. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml +0 -75
  226. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml +0 -75
  227. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +0 -103
  228. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +0 -102
  229. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +0 -106
  230. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/JaLC.yml +0 -137
  231. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/KISTI.yml +0 -158
  232. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/OP.yml +0 -100
  233. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml +0 -101
  234. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book.yml +0 -138
  235. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book_chapter.yml +0 -100
  236. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/article_id_as_page_number.yml +0 -101
  237. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/author_literal.yml +0 -108
  238. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book.yml +0 -99
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  427. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_4.yml +0 -48
  428. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_5.yml +0 -48
  429. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_6.yml +0 -48
  430. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_7.yml +0 -48
  431. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_8.yml +0 -48
  432. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_9.yml +0 -48
  433. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi.yml +0 -48
  434. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi_without_prefix.yml +0 -48
  435. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/non-funder_doi.yml +0 -48
  436. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml +0 -48
  437. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_https.yml +0 -48
  438. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml +0 -48
  439. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox.yml +0 -65
  440. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox_https.yml +0 -65
  441. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml +0 -48
  442. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml +0 -48
  443. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_www.yml +0 -48
  444. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme.yml +0 -48
  445. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_https.yml +0 -48
  446. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_trailing_slash.yml +0 -48
  447. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_www.yml +0 -48
  448. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi.yml +0 -48
  449. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_as_url.yml +0 -48
  450. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_with_protocol.yml +0 -48
  451. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/only_prefix.yml +0 -48
  452. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/DOI.yml +0 -48
  453. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/ISSN.yml +0 -48
  454. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/URL.yml +0 -48
  455. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/string.yml +0 -48
  456. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/BlogPosting.yml +0 -55
  457. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/Dataset.yml +0 -55
  458. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +0 -114
  459. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/climate_data.yml +0 -55
  460. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/from_schema_org.yml +0 -115
  461. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +0 -55
  462. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/maremma.yml +0 -75
  463. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/text.yml +0 -55
  464. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_data_citation.yml +0 -55
  465. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_pages.yml +0 -52
  466. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Dataset.yml +0 -55
  467. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article.yml +0 -55
  468. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +0 -55
  469. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Missing_author.yml +0 -49
  470. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +0 -55
  471. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/software_w/version.yml +0 -55
  472. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Another_dataset.yml +0 -55
  473. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting.yml +0 -55
  474. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting_schema_org.yml +0 -115
  475. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Dataset.yml +0 -55
  476. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/container_title.yml +0 -55
  477. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/interactive_resource_without_dates.yml +0 -55
  478. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/journal_article.yml +0 -55
  479. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/keywords_subject_scheme.yml +0 -55
  480. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/maremma.yml +0 -75
  481. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/missing_creator.yml +0 -49
  482. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/multiple_abstracts.yml +0 -55
  483. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/organization_author.yml +0 -52
  484. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/software.yml +0 -55
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  486. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_only_first_page.yml +0 -50
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  488. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +0 -55
  489. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +0 -55
  490. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/datacite_database_attributes.yml +0 -55
  491. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/maremma.yml +0 -75
  492. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_ORCID_ID.yml +0 -52
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  495. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/from_DataCite.yml +0 -55
  496. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/climate_data.yml +0 -55
  497. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/maremma.yml +0 -75
  498. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/text.yml +0 -55
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  500. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_pages.yml +0 -52
  501. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/maremma.yml +0 -75
  502. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_ORCID_ID.yml +0 -52
  503. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation.yml +0 -55
  504. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation_schema_org.yml +0 -117
  505. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/DOI_not_found.yml +0 -51
  506. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Dataset_in_schema_4_0.yml +0 -55
  507. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru.yml +0 -55
  508. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru_with_doi_in_options.yml +0 -55
  509. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/maremma.yml +0 -75
  510. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_ORCID_ID.yml +0 -52
  511. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation.yml +0 -55
  512. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation_schema_org.yml +0 -115
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  515. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +0 -55
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  534. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +0 -55
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  537. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding.yml +0 -106
  538. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +0 -106
  539. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +0 -55
  540. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +0 -106
  541. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +0 -106
  542. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +0 -55
  543. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +0 -55
  544. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/data_catalog.yml +0 -55
  545. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/geo_location_box.yml +0 -55
  546. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +0 -55
  547. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/journal_article.yml +0 -55
  548. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +0 -75
  549. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/series_information.yml +0 -55
  550. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme.yml +0 -55
  551. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +0 -55
  552. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting.yml +0 -55
  553. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +0 -117
  554. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml +0 -55
  555. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/journal_article.yml +0 -55
  556. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/with_pages.yml +0 -52
  557. data/spec/fixtures/vivli.xml +0 -1
  558. data/spec/metadata_spec.rb +0 -165
  559. data/spec/readers/bibtex_reader_spec.rb +0 -65
  560. data/spec/readers/citeproc_reader_spec.rb +0 -64
  561. data/spec/readers/codemeta_reader_spec.rb +0 -138
  562. data/spec/readers/crosscite_reader_spec.rb +0 -43
  563. data/spec/readers/crossref_reader_spec.rb +0 -1102
  564. data/spec/readers/datacite_json_reader_spec.rb +0 -82
  565. data/spec/readers/datacite_reader_spec.rb +0 -1812
  566. data/spec/readers/npm_reader_spec.rb +0 -68
  567. data/spec/readers/ris_reader_spec.rb +0 -78
  568. data/spec/readers/schema_org_reader_spec.rb +0 -344
  569. data/spec/spec_helper.rb +0 -95
  570. data/spec/utils_spec.rb +0 -666
  571. data/spec/writers/bibtex_writer_spec.rb +0 -195
  572. data/spec/writers/citation_writer_spec.rb +0 -61
  573. data/spec/writers/citeproc_writer_spec.rb +0 -290
  574. data/spec/writers/codemeta_writer_spec.rb +0 -45
  575. data/spec/writers/crosscite_writer_spec.rb +0 -129
  576. data/spec/writers/crossref_writer_spec.rb +0 -21
  577. data/spec/writers/csv_writer_spec.rb +0 -94
  578. data/spec/writers/datacite_json_writer_spec.rb +0 -112
  579. data/spec/writers/datacite_writer_spec.rb +0 -507
  580. data/spec/writers/jats_writer_spec.rb +0 -208
  581. data/spec/writers/rdf_xml_writer_spec.rb +0 -93
  582. data/spec/writers/ris_writer_spec.rb +0 -207
  583. data/spec/writers/schema_org_writer_spec.rb +0 -382
  584. data/spec/writers/turtle_writer_spec.rb +0 -102
data/spec/fixtures/datacite-geolocation-empty.xml DELETED
@@ -1,159 +0,0 @@
1
- <?xml version="1.0" encoding="utf-8"?>
2
- <resource xmlns="http://datacite.org/schema/kernel-4" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
3
- <identifier identifierType="DOI">10.1594/IEDA/111185</identifier>
4
- <creators>
5
- <creator>
6
- <creatorName>Carlos P Carvajal</creatorName>
7
- <givenName>Carlos</givenName>
8
- <familyName>Carvajal</familyName>
9
- </creator>
10
- <creator>
11
- <creatorName>Gerilyn S Soreghan</creatorName>
12
- <givenName>Gerilyn</givenName>
13
- <familyName>Soreghan</familyName>
14
- </creator>
15
- <creator>
16
- <creatorName>Peter E Isaacson</creatorName>
17
- <givenName>Peter</givenName>
18
- <familyName>Isaacson</familyName>
19
- </creator>
20
- </creators>
21
- <titles>
22
- <title>Geochemical and grain-size analyses of atmospheric dusts from Pennsylvanian carbonates of the Copacabana Formation (Madre de Dios Basin, Bolivia)</title>
23
- </titles>
24
- <publisher>EarthChem</publisher>
25
- <publicationYear>2018</publicationYear>
26
- <subjects>
27
- <subject subjectScheme="coverage scope">Global</subject>
28
- </subjects>
29
- <dates>
30
- <date dateType="Available">2018-06-21</date>
31
- <date dateType="Created">2018-06-20</date>
32
- </dates>
33
- <language>en</language>
34
- <resourceType resourceTypeGeneral="Dataset">Dataset</resourceType>
35
- <alternateIdentifiers>
36
- <alternateIdentifier alternateIdentifierType="URL">http://www.earthchem.org/library/browse/view?id=1185</alternateIdentifier>
37
- </alternateIdentifiers>
38
- <relatedIdentifiers>
39
- <relatedIdentifier relatedIdentifierType="DOI" relationType="IsReferencedBy">10.1016/j.gr.2018.02.007</relatedIdentifier>
40
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0001</relatedIdentifier>
41
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0002</relatedIdentifier>
42
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0003</relatedIdentifier>
43
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0004</relatedIdentifier>
44
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0005</relatedIdentifier>
45
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0006</relatedIdentifier>
46
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0007</relatedIdentifier>
47
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0008</relatedIdentifier>
48
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0009</relatedIdentifier>
49
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000A</relatedIdentifier>
50
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000B</relatedIdentifier>
51
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000C</relatedIdentifier>
52
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000D</relatedIdentifier>
53
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000E</relatedIdentifier>
54
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000F</relatedIdentifier>
55
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000G</relatedIdentifier>
56
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000H</relatedIdentifier>
57
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000I</relatedIdentifier>
58
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000J</relatedIdentifier>
59
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000K</relatedIdentifier>
60
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000L</relatedIdentifier>
61
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000M</relatedIdentifier>
62
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000N</relatedIdentifier>
63
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- <identifier identifierType="DOI">10.5438/4K3M-NYVG</identifier>
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- <creatorName>Fenner, Martin</creatorName>
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- <title>Eating your own Dog Food</title>
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- <date dateType="Created">2016-12-20</date>
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- <date dateType="Issued">2016-12-20</date>
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- <description descriptionType="Abstract">Eating your own dog food is a slang term to
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- describe that an organization should itself use the products and services it provides.
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- For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...
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- <identifier identifierType="DOI">10.1594/GFZ.SDDB.1102</identifier>
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- <creator>
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- <creatorName>Dannowski, Grit</creatorName>
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- <creatorName>Schrötter, Jörg</creatorName>
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- <creatorName>Erbas, Kemal</creatorName>
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- <creatorName>Huenges, Ernst</creatorName>
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- <title>Borehole Temperature of HSDP-2-A on 07/05/1999</title>
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- <publisher>Deutsches GeoForschungsZentrum GFZ</publisher>
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- <publicationYear>2007</publicationYear>
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- <subjects>
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- <subject subjectScheme="project">Hawaii Scientific Drilling Project</subject>
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- <subject subjectScheme="platform">Land based</subject>
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- <subject subjectScheme="keyword">Distributed Optical Fibre Temperature Sensing</subject>
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- <subject subjectScheme="keyword">temperature_07/05/99_02:44am</subject>
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- <description descriptionType="Abstract">The temperature pattern is attributed to a superposition of thermal and hydraulic processes. In the deeper borehole (HSDP-2, depth 3.1 km) detailed temperature monitoring was performed. Temperature measurements reveal two different thermal regimes. The upper part is characterised by cold temperatures and a negative temperature gradient similar to those observed in the shallow pilot borehole. Below 1100 m, increasing temperatures are observed. Different processes, such as topographically driven groundwater flow, ingress of salt water and conductive previous termheatnext term flow are investigated by numerical modeling. A pure conductive scenario fails to match the temperature measurements, implying that both borehole sections are overprinted by advective conditions. Coupled fluid and previous termheatnext term flow modeling with solute transport yield results that agree with observed temperatures. These data were taken at 07/05/1999 from 02.30 a.m. to 07.30 a.m.</description>
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