bolognese 2.2.0 → 2.3.2
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- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/lib/bolognese/metadata_utils.rb +1 -0
- data/lib/bolognese/readers/citeproc_reader.rb +6 -0
- data/lib/bolognese/readers/crossref_reader.rb +37 -3
- data/lib/bolognese/readers/schema_org_reader.rb +21 -2
- data/lib/bolognese/utils.rb +12 -7
- data/lib/bolognese/version.rb +1 -1
- data/lib/bolognese/writers/schema_org_writer.rb +4 -0
- data/resources/kernel-4/include/datacite-contributorType-v4.xsd +3 -1
- data/resources/kernel-4/include/datacite-dateType-v4.xsd +3 -1
- data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +5 -2
- data/resources/kernel-4/include/datacite-relationType-v4.xsd +7 -3
- data/resources/kernel-4/include/datacite-resourceType-v4.xsd +5 -1
- data/resources/kernel-4/include/datacite-titleType-v4.xsd +1 -1
- data/resources/kernel-4/metadata.xsd +2 -1
- data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
- data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
- data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
- data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
- data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
- data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.6/include/xml.xsd +286 -0
- data/resources/kernel-4.6/metadata.xsd +712 -0
- data/spec/datacite_utils_spec.rb +109 -1
- data/spec/fixtures/citeproc.json +6 -2
- data/spec/fixtures/crossref_schema_4.6_values.xml +183 -0
- data/spec/fixtures/datacite-example-full-v4.6.xml +114 -0
- data/spec/fixtures/schema_org_4.6_attributes.json +108 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_contributors_Translator/supports_Translator_contributorType.yml +71 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_dates_with_Coverage/inserts_date_with_dateType_Coverage.yml +71 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_related_identifiers_CSTR/supports_CSTR_relatedIdentifierType.yml +71 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_related_identifiers_HasTranslation/supports_HasTranslation_relationType.yml +71 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_related_identifiers_RRID/supports_RRID_relatedIdentifierType.yml +71 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_resource_type_with_Award/supports_Award_as_resourceTypeGeneral.yml +71 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_resource_type_with_Project/supports_Project_as_resourceTypeGeneral.yml +71 -0
- data/spec/readers/citeproc_reader_spec.rb +1 -0
- data/spec/readers/crossref_reader_spec.rb +31 -0
- data/spec/readers/datacite_reader_spec.rb +41 -0
- data/spec/readers/schema_org_reader_spec.rb +27 -0
- data/spec/writers/citeproc_writer_spec.rb +9 -0
- data/spec/writers/datacite_writer_spec.rb +71 -0
- data/spec/writers/jats_writer_spec.rb +1 -1
- data/spec/writers/schema_org_writer_spec.rb +36 -0
- metadata +24 -2
data/spec/datacite_utils_spec.rb
CHANGED
@@ -204,4 +204,112 @@ describe Bolognese::Metadata, vcr: true do
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)
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end
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end
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-
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+
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### New DataCite 4.6 Features Tests ###
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context "insert_resource_type with Project" do
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it "supports Project as resourceTypeGeneral" do
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# Mock the `types` hash to include Project
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subject.instance_variable_set(:@types, {
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"resourceTypeGeneral" => "Project",
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"resourceType" => "Research Project"
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})
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# Generate XML using the insert_resource_type method
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_resource_type(xml) }.to_xml
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response = Maremma.from_xml(xml)
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# Expect `Project` in resourceTypeGeneral and `Research Project` as the content
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expect(response["resourceType"]).to eq(
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"resourceTypeGeneral" => "Project",
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"__content__" => "Research Project"
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)
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end
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end
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context "insert_resource_type with Award" do
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it "supports Award as resourceTypeGeneral" do
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# Mock the `types` hash to include Award
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subject.instance_variable_set(:@types, {
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"resourceTypeGeneral" => "Award",
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"resourceType" => "Nobel Prize"
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})
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# Generate XML using the insert_resource_type method
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_resource_type(xml) }.to_xml
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response = Maremma.from_xml(xml)
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# Expect `Award` in resourceTypeGeneral and `Nobel Prize` as the content
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expect(response["resourceType"]).to eq(
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"resourceTypeGeneral" => "Award",
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"__content__" => "Nobel Prize"
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)
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end
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end
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# Test case to insert Coverage DateType (new dateType in DataCite 4.6).
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context "insert_dates with Coverage" do
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it "inserts date with dateType Coverage" do
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subject.dates = [{ "date" => "2021-01-01", "dateType" => "Coverage" }]
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_dates(xml) }.to_xml
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response = Maremma.from_xml(xml)
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dates = response.dig("dates", "date")
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expect(dates).to eq("__content__" => "2021-01-01", "dateType" => "Coverage")
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end
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end
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# Test case to insert Translator contributor (new contributorType in DataCite 4.6)
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context "insert_contributors Translator" do
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it "supports Translator contributorType" do
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subject.contributors = [
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{ "contributorName" => "John Translator", "contributorType" => "Translator" }
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]
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_contributors(xml) }.to_xml
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response = Maremma.from_xml(xml)
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expect(response.dig("contributors", "contributor", "contributorType")).to eq("Translator")
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end
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end
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+
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# Test case for RRID (new relatedIdentifierType in DataCite 4.6)
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context "insert_related_identifiers RRID" do
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it "supports RRID relatedIdentifierType" do
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subject.related_identifiers = [
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{ "relatedIdentifier" => "RRID:AB_90755", "relatedIdentifierType" => "RRID", "relationType" => "References" }
|
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]
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_related_identifiers(xml) }.to_xml
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response = Maremma.from_xml(xml)
|
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expect(response.dig("relatedIdentifiers", "relatedIdentifier")).to eq("__content__" => "RRID:AB_90755", "relatedIdentifierType" => "RRID", "relationType" => "References")
|
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end
|
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end
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+
|
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### Test case #2 for adding CSTR ###
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context "insert_related_identifiers CSTR" do
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it "supports CSTR relatedIdentifierType" do
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subject.related_identifiers = [
|
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{ "relatedIdentifier" => "CSTR:AB_12345", "relatedIdentifierType" => "CSTR", "relationType" => "References" }
|
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]
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_related_identifiers(xml) }.to_xml
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response = Maremma.from_xml(xml)
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expect(response.dig("relatedIdentifiers", "relatedIdentifier")).to eq("__content__" => "CSTR:AB_12345", "relatedIdentifierType" => "CSTR", "relationType" => "References")
|
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+
end
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end
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|
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# Test case for HasTranslation (new relationType in DataCite 4.6)
|
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context "insert_related_identifiers HasTranslation" do
|
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it "supports HasTranslation relationType" do
|
306
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subject.related_identifiers = [
|
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{ "relatedIdentifier" => "10.1234/translated-version", "relatedIdentifierType" => "DOI", "relationType" => "HasTranslation" }
|
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]
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|
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xml = Nokogiri::XML::Builder.new(:encoding => 'UTF-8') { |xml| subject.insert_related_identifiers(xml) }.to_xml
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response = Maremma.from_xml(xml)
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expect(response.dig("relatedIdentifiers", "relatedIdentifier")).to eq("__content__" => "10.1234/translated-version", "relatedIdentifierType" => "DOI", "relationType" => "HasTranslation")
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end
|
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end
|
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end
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data/spec/fixtures/citeproc.json
CHANGED
@@ -0,0 +1,183 @@
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1
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<?xml version="1.0" encoding="UTF-8"?>
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2
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<crossref_result xmlns="http://www.crossref.org/qrschema/3.0" version="3.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.crossref.org/qrschema/3.0 http://www.crossref.org/schemas/crossref_query_output3.0.xsd">
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3
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<query_result>
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<head>
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<doi_batch_id>none</doi_batch_id>
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</head>
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<body>
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<query status="resolved">
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9
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<doi type="journal_article">10.7554/eLife.01567</doi>
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10
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<crm-item name="publisher-name" type="string">eLife Sciences Publications, Ltd</crm-item>
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11
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<crm-item name="prefix-name" type="string">eLife Sciences Publications, Ltd.</crm-item>
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12
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<crm-item name="member-id" type="number">4374</crm-item>
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13
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<crm-item name="citation-id" type="number">67124617</crm-item>
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<crm-item name="journal-id" type="number">189365</crm-item>
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15
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<crm-item name="deposit-timestamp" type="number">20180823133646</crm-item>
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16
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<crm-item name="owner-prefix" type="string">10.7554</crm-item>
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<crm-item name="last-update" type="date">2018-08-23T13:41:49Z</crm-item>
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<crm-item name="created" type="date">2014-02-11T16:29:04Z</crm-item>
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<crm-item name="citedby-count" type="number">13</crm-item>
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<doi_record>
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<crossref xmlns="http://www.crossref.org/xschema/1.1" xsi:schemaLocation="http://www.crossref.org/xschema/1.1 http://doi.crossref.org/schemas/unixref1.1.xsd">
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<journal>
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<journal_metadata language="en">
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<full_title>Journal of Metadata Perfection</full_title>
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<abbrev_title>JOMPer</abbrev_title>
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<doi_data>
|
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<doi>10.32013/487529</doi>
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<resource>https://www.crossref.org/jomper</resource>
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</doi_data>
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</journal_metadata>
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<journal_issue>
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<publication_date media_type="online">
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<month>08</month>
|
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<day>13</day>
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35
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<year>2008</year>
|
36
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</publication_date>
|
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<publication_date media_type="print">
|
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<month>08</month>
|
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<day>14</day>
|
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<year>2008</year>
|
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</publication_date>
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<journal_volume>
|
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<volume>5</volume>
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</journal_volume>
|
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<issue>11</issue>
|
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</journal_issue>
|
47
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<journal_article publication_type="full_text">
|
48
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<titles>
|
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<title>Quand vos meilleures métadonnées ne suffisent pas: travailler avec une spécification imparfaite</title>
|
50
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<original_language_title language="en">When your best metadata isn't good enough: working with an imperfect specification </original_language_title>
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</titles>
|
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<contributors>
|
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<person_name sequence="first" contributor_role="author">
|
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<given_name>Minerva</given_name>
|
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<surname>Housecat</surname>
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<affiliation>Crossref University</affiliation>
|
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<ORCID authenticated="true">https://orcid.org/0000-0002-4011-3590</ORCID>
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</person_name>
|
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<person_name sequence="additional" contributor_role="author">
|
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<given_name>Josiah</given_name>
|
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<surname>Carberry</surname>
|
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<affiliation>Brown University</affiliation>
|
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<ORCID authenticated="true">https://orcid.org/0000-0002-1825-0097</ORCID>
|
64
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</person_name>
|
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<person_name contributor_role="editor" sequence="additional">
|
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<given_name>Ashwini</given_name>
|
67
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<surname>Sukale</surname>
|
68
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<affiliation>DataCite</affiliation>
|
69
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</person_name>
|
70
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<person_name contributor_role="translator" sequence="additional">
|
71
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<given_name>Cody</given_name>
|
72
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<surname>Ross</surname>
|
73
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<affiliation>DataCite</affiliation>
|
74
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+
</person_name>
|
75
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</contributors>
|
76
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<publication_date media_type="online">
|
77
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+
<month>08</month>
|
78
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+
<day>13</day>
|
79
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+
<year>2018</year>
|
80
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+
</publication_date>
|
81
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+
<publication_date media_type="print">
|
82
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+
<month>08</month>
|
83
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+
<day>14</day>
|
84
|
+
<year>2018</year>
|
85
|
+
</publication_date>
|
86
|
+
<acceptance_date>
|
87
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<month>05</month>
|
88
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+
<day>21</day>
|
89
|
+
<year>2018</year>
|
90
|
+
</acceptance_date>
|
91
|
+
<pages>
|
92
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<first_page>1</first_page>
|
93
|
+
<last_page>3</last_page>
|
94
|
+
</pages>
|
95
|
+
<publisher_item>
|
96
|
+
<item_number item_number_type="article_number">2347854-0</item_number>
|
97
|
+
</publisher_item>
|
98
|
+
<program xmlns="http://www.crossref.org/relations.xsd">
|
99
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+
<related_item>
|
100
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+
<description>English language version</description>
|
101
|
+
<intra_work_relation relationship-type="hasTranslation" identifier-type="doi"
|
102
|
+
>10.32013/zLl10OQ</intra_work_relation>
|
103
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+
</related_item>
|
104
|
+
<related_item>
|
105
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+
<description>Portuguese translation of an article</description>
|
106
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+
<intra_work_relation relationship-type="isTranslationOf" identifier-type="doi">10.5555/original_language</intra_work_relation>
|
107
|
+
</related_item>
|
108
|
+
</program>
|
109
|
+
<archive_locations>
|
110
|
+
<archive name="CLOCKSS"/>
|
111
|
+
<archive name="Internet Archive"/>
|
112
|
+
<archive name="Portico"/>
|
113
|
+
<archive name="KB"/>
|
114
|
+
</archive_locations>
|
115
|
+
<doi_data>
|
116
|
+
<doi>10.32013/4859104</doi>
|
117
|
+
<resource>https://www.crossref.org/xml-samples/</resource>
|
118
|
+
<collection property="crawler-based">
|
119
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+
<item crawler="iParadigms">
|
120
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+
<resource>https://www.crossref.org/faqs.html</resource>
|
121
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+
</item>
|
122
|
+
</collection>
|
123
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+
<collection property="text-mining">
|
124
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+
<item>
|
125
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+
<resource content_version="vor" mime_type="text/xml"
|
126
|
+
>https://www.crossref.org/example.xml</resource>
|
127
|
+
</item>
|
128
|
+
</collection>
|
129
|
+
<collection property="link-header">
|
130
|
+
<item link_header_relationship="dul">
|
131
|
+
<resource>http://www.crossref.org/exampleDULendpoint</resource>
|
132
|
+
</item>
|
133
|
+
</collection>
|
134
|
+
</doi_data>
|
135
|
+
<citation_list>
|
136
|
+
<citation key="ref1">
|
137
|
+
<doi>10.1101/144147</doi>
|
138
|
+
<unstructured_citation>BioSharing: Harnessing Metadata Standards For The
|
139
|
+
Data Commons. Susanna-Assunta Sansone, Alejandra Gonzalez-Beltran,
|
140
|
+
Philippe Rocca-Serra, PeterMcQuilton, Massimiliano Izzo, Allyson Lister,
|
141
|
+
Milo Thurston. bioRxiv 144147</unstructured_citation>
|
142
|
+
</citation>
|
143
|
+
<citation key="ref2">
|
144
|
+
<doi>10.1515/jdis-2017-0012</doi>
|
145
|
+
<unstructured_citation>Greenberg, J. (2017). Big Metadata, Smart Metadata,
|
146
|
+
and Metadata Capital: Toward Greater Synergy Between Data Science and
|
147
|
+
Metadata, Journal of Data and Information Science, 2(3), 19-36.
|
148
|
+
</unstructured_citation>
|
149
|
+
</citation>
|
150
|
+
<citation key="ref3">
|
151
|
+
<doi>10.32013/s4947892</doi>
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information standards and technologies: cataloging and metadata
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professionals’ perspectives", Library Hi Tech News, Vol. 34 Issue: 4,
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Bethesda,MD: NISO Press.</unstructured_citation>
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<titles>
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<title xml:lang="en">Example Title</title>
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<title titleType="Subtitle" xml:lang="en">Example Subtitle</title>
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<title titleType="TranslatedTitle" xml:lang="fr">Example TranslatedTitle</title>
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<title titleType="AlternativeTitle" xml:lang="en">Example AlternativeTitle</title>
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69
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+
http_version:
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70
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recorded_at: Thu, 03 Oct 2024 10:58:34 GMT
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71
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recorded_with: VCR 3.0.3
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