bolognese 2.0.0 → 2.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (587) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/ci.yml +1 -1
  3. data/.github/workflows/release.yml +2 -2
  4. data/Gemfile +1 -1
  5. data/Gemfile.lock +199 -166
  6. data/README.md +1 -1
  7. data/bolognese.gemspec +30 -36
  8. data/lib/bolognese/author_utils.rb +6 -48
  9. data/lib/bolognese/citeproc_extensions.rb +48 -0
  10. data/lib/bolognese/datacite_utils.rb +17 -7
  11. data/lib/bolognese/doi_utils.rb +4 -3
  12. data/lib/bolognese/metadata.rb +8 -5
  13. data/lib/bolognese/metadata_utils.rb +20 -5
  14. data/lib/bolognese/readers/citeproc_reader.rb +7 -1
  15. data/lib/bolognese/readers/codemeta_reader.rb +1 -1
  16. data/lib/bolognese/readers/crossref_reader.rb +50 -4
  17. data/lib/bolognese/readers/datacite_reader.rb +23 -49
  18. data/lib/bolognese/readers/ris_reader.rb +1 -1
  19. data/lib/bolognese/readers/schema_org_reader.rb +27 -5
  20. data/lib/bolognese/utils.rb +109 -122
  21. data/lib/bolognese/version.rb +1 -1
  22. data/lib/bolognese/writers/csv_writer.rb +3 -5
  23. data/lib/bolognese/writers/datacite_json_writer.rb +1 -4
  24. data/lib/bolognese/writers/jats_writer.rb +7 -3
  25. data/lib/bolognese/writers/schema_org_writer.rb +5 -1
  26. data/lib/bolognese.rb +1 -4
  27. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +3 -1
  28. data/resources/kernel-4/include/datacite-dateType-v4.xsd +3 -1
  29. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +7 -2
  30. data/resources/kernel-4/include/datacite-relationType-v4.xsd +9 -3
  31. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +8 -1
  32. data/resources/kernel-4/include/datacite-titleType-v4.xsd +1 -1
  33. data/resources/kernel-4/metadata.xsd +5 -1
  34. data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
  35. data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
  36. data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
  37. data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
  38. data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
  39. data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
  40. data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
  41. data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
  42. data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
  43. data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
  44. data/resources/kernel-4.6/include/xml.xsd +286 -0
  45. data/resources/kernel-4.6/metadata.xsd +712 -0
  46. data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
  47. data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
  48. data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
  49. data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
  50. data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
  51. data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
  52. data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  53. data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
  54. data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
  55. data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
  56. data/resources/kernel-4.7/include/xml.xsd +286 -0
  57. data/resources/kernel-4.7/metadata.xsd +715 -0
  58. metadata +147 -719
  59. data/spec/array_spec.rb +0 -22
  60. data/spec/author_utils_spec.rb +0 -253
  61. data/spec/cli_spec.rb +0 -226
  62. data/spec/datacite_utils_spec.rb +0 -207
  63. data/spec/doi_utils_spec.rb +0 -314
  64. data/spec/find_from_format_spec.rb +0 -114
  65. data/spec/fixtures/aida.json +0 -82
  66. data/spec/fixtures/cgimp_package.json +0 -18
  67. data/spec/fixtures/cit_package.json +0 -19
  68. data/spec/fixtures/citeproc-no-author.json +0 -26
  69. data/spec/fixtures/citeproc-no-categories.json +0 -21
  70. data/spec/fixtures/citeproc.json +0 -32
  71. data/spec/fixtures/codemeta.json +0 -86
  72. data/spec/fixtures/codemeta_v2.json +0 -86
  73. data/spec/fixtures/crosscite.json +0 -63
  74. data/spec/fixtures/crossref.bib +0 -14
  75. data/spec/fixtures/crossref.ris +0 -15
  76. data/spec/fixtures/crossref.xml +0 -606
  77. data/spec/fixtures/datacite-empty-sizes.xml +0 -57
  78. data/spec/fixtures/datacite-example-ROR-nameIdentifiers.xml +0 -117
  79. data/spec/fixtures/datacite-example-affiliation.xml +0 -114
  80. data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +0 -29
  81. data/spec/fixtures/datacite-example-complicated-tba.xml +0 -56
  82. data/spec/fixtures/datacite-example-complicated-v3.0.xml +0 -48
  83. data/spec/fixtures/datacite-example-complicated-v4.0.xml +0 -54
  84. data/spec/fixtures/datacite-example-complicated-v4.1.xml +0 -57
  85. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +0 -56
  86. data/spec/fixtures/datacite-example-escaped-text.xml +0 -56
  87. data/spec/fixtures/datacite-example-full-v4.4.xml +0 -114
  88. data/spec/fixtures/datacite-example-full-v4.5.xml +0 -255
  89. data/spec/fixtures/datacite-example-geolocation-2.xml +0 -141
  90. data/spec/fixtures/datacite-example-geolocation.xml +0 -66
  91. data/spec/fixtures/datacite-example-nameIdentifier-with-schemeURI.xml +0 -94
  92. data/spec/fixtures/datacite-example-polygon-v4.1.xml +0 -163
  93. data/spec/fixtures/datacite-example-relateditems-with-attributes.xml +0 -61
  94. data/spec/fixtures/datacite-example-relateditems.xml +0 -61
  95. data/spec/fixtures/datacite-example-xs-string.xml +0 -28
  96. data/spec/fixtures/datacite-formats-with-xs.xml +0 -22
  97. data/spec/fixtures/datacite-funderIdentifier.xml +0 -98
  98. data/spec/fixtures/datacite-geolocation-empty.xml +0 -159
  99. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +0 -76
  100. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +0 -52
  101. data/spec/fixtures/datacite-multiple-language.xml +0 -38
  102. data/spec/fixtures/datacite-multiple-rights.xml +0 -59
  103. data/spec/fixtures/datacite-schema-2.2.xml +0 -80
  104. data/spec/fixtures/datacite-seriesinformation.xml +0 -46
  105. data/spec/fixtures/datacite-space-in-sizes.xml +0 -52
  106. data/spec/fixtures/datacite-xml-lang.xml +0 -51
  107. data/spec/fixtures/datacite.json +0 -89
  108. data/spec/fixtures/datacite.xml +0 -40
  109. data/spec/fixtures/datacite_dataset.xml +0 -58
  110. data/spec/fixtures/datacite_malformed_creator.xml +0 -52
  111. data/spec/fixtures/datacite_missing_creator.xml +0 -33
  112. data/spec/fixtures/datacite_schema_3.xml +0 -58
  113. data/spec/fixtures/datacite_software.json +0 -21
  114. data/spec/fixtures/datacite_software_missing_comma.json +0 -18
  115. data/spec/fixtures/datacite_software_overlapping_keys.json +0 -18
  116. data/spec/fixtures/datacite_software_version.json +0 -74
  117. data/spec/fixtures/edam_package.json +0 -12
  118. data/spec/fixtures/funding_reference.xml +0 -53
  119. data/spec/fixtures/gtex.xml +0 -71
  120. data/spec/fixtures/maremma/codemeta.json +0 -36
  121. data/spec/fixtures/nist.xml +0 -35
  122. data/spec/fixtures/ns0.xml +0 -2
  123. data/spec/fixtures/pure.bib +0 -14
  124. data/spec/fixtures/pure.ris +0 -15
  125. data/spec/fixtures/pure.xml +0 -188
  126. data/spec/fixtures/ris_bug.ris +0 -9
  127. data/spec/fixtures/schema_4.0.xml +0 -140
  128. data/spec/fixtures/schema_org.json +0 -49
  129. data/spec/fixtures/schema_org_geolocation.json +0 -82
  130. data/spec/fixtures/schema_org_geoshape.json +0 -550
  131. data/spec/fixtures/schema_org_gtex.json +0 -75
  132. data/spec/fixtures/schema_org_list.json +0 -12623
  133. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +0 -25
  134. data/spec/fixtures/schema_org_topmed.json +0 -53
  135. data/spec/fixtures/schema_org_type_as_array.json +0 -41
  136. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/default.yml +0 -106
  137. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_bibtex.yml +0 -106
  138. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_citation.yml +0 -106
  139. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_crossref.yml +0 -106
  140. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_datacite.yml +0 -106
  141. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_jats.yml +0 -106
  142. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_schema_org.yml +0 -106
  143. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/default.yml +0 -106
  144. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_bibtex.yml +0 -106
  145. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_citation.yml +0 -106
  146. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite.yml +0 -106
  147. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite_json.yml +0 -106
  148. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_jats.yml +0 -106
  149. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_schema_org.yml +0 -106
  150. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/default.yml +0 -117
  151. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_datacite.yml +0 -117
  152. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_schema_org.yml +0 -115
  153. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/crossref.yml +0 -54
  154. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/datacite.yml +0 -54
  155. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/jalc.yml +0 -54
  156. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/kisti.yml +0 -54
  157. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/medra.yml +0 -54
  158. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/op.yml +0 -54
  159. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/author.yml +0 -48
  160. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/no_author.yml +0 -48
  161. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/single_author.yml +0 -48
  162. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/with_organization.yml +0 -48
  163. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_state.yml +0 -106
  164. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_title.yml +0 -106
  165. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_description.yml +0 -55
  166. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_identifiers.yml +0 -55
  167. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license.yml +0 -55
  168. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_name.yml +0 -55
  169. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_url.yml +0 -55
  170. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_state.yml +0 -55
  171. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/validates_against_schema.yml +0 -55
  172. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +0 -55
  173. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi.yml +0 -48
  174. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi_with_protocol.yml +0 -48
  175. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/dx_doi_org_url.yml +0 -48
  176. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/force_test_resolver.yml +0 -48
  177. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/https_url.yml +0 -48
  178. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver.yml +0 -48
  179. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver_http.yml +0 -48
  180. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi.yml +0 -48
  181. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi_with_special_characters.yml +0 -48
  182. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/not_a_doi.yml +0 -48
  183. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/sandbox_url.yml +0 -48
  184. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/url.yml +0 -48
  185. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/crossref.yml +0 -99
  186. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/datacite.yml +0 -99
  187. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/jalc.yml +0 -99
  188. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/kisti.yml +0 -99
  189. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/medra.yml +0 -99
  190. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_a_valid_prefix.yml +0 -48
  191. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_found.yml +0 -99
  192. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/op.yml +0 -99
  193. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi.yml +0 -48
  194. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi_with_protocol.yml +0 -48
  195. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/dx_doi_org_url.yml +0 -48
  196. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/force_stage_resolver.yml +0 -48
  197. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/https_url.yml +0 -48
  198. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver.yml +0 -48
  199. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver_http.yml +0 -48
  200. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref.yml +0 -157
  201. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +0 -157
  202. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite.yml +0 -157
  203. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite_doi_http.yml +0 -157
  204. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/github.yml +0 -106
  205. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/orcid.yml +0 -106
  206. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/schema_org.yml +0 -106
  207. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +0 -157
  208. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/bibtex.yml +0 -106
  209. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/citeproc.yml +0 -106
  210. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/codemeta.yml +0 -106
  211. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crosscite.yml +0 -106
  212. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crossref.yml +0 -106
  213. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite.yml +0 -106
  214. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite_json.yml +0 -106
  215. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/ris.yml +0 -106
  216. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/schema_org.yml +0 -106
  217. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml +0 -106
  218. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_match.yml +0 -48
  219. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +0 -48
  220. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_match.yml +0 -48
  221. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_no_match.yml +0 -48
  222. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_for_match.yml +0 -48
  223. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_match.yml +0 -48
  224. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_no_match.yml +0 -48
  225. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml +0 -48
  226. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/with_affiliation.yml +0 -48
  227. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/without_affiliation.yml +0 -48
  228. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml +0 -75
  229. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml +0 -75
  230. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +0 -103
  231. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +0 -102
  232. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +0 -106
  233. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/JaLC.yml +0 -137
  234. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/KISTI.yml +0 -158
  235. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/OP.yml +0 -100
  236. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml +0 -101
  237. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book.yml +0 -138
  238. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book_chapter.yml +0 -100
  239. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/article_id_as_page_number.yml +0 -101
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  428. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_13.yml +0 -48
  429. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_14.yml +0 -48
  430. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_4.yml +0 -48
  431. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_5.yml +0 -48
  432. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_6.yml +0 -48
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  434. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_8.yml +0 -48
  435. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_9.yml +0 -48
  436. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi.yml +0 -48
  437. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi_without_prefix.yml +0 -48
  438. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/non-funder_doi.yml +0 -48
  439. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml +0 -48
  440. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_https.yml +0 -48
  441. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml +0 -48
  442. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox.yml +0 -65
  443. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox_https.yml +0 -65
  444. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml +0 -48
  445. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml +0 -48
  446. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_www.yml +0 -48
  447. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme.yml +0 -48
  448. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_https.yml +0 -48
  449. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_trailing_slash.yml +0 -48
  450. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_www.yml +0 -48
  451. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi.yml +0 -48
  452. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_as_url.yml +0 -48
  453. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_with_protocol.yml +0 -48
  454. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/only_prefix.yml +0 -48
  455. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/DOI.yml +0 -48
  456. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/ISSN.yml +0 -48
  457. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/URL.yml +0 -48
  458. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/string.yml +0 -48
  459. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/BlogPosting.yml +0 -55
  460. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/Dataset.yml +0 -55
  461. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +0 -114
  462. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/climate_data.yml +0 -55
  463. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/from_schema_org.yml +0 -115
  464. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +0 -55
  465. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/maremma.yml +0 -75
  466. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/text.yml +0 -55
  467. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_data_citation.yml +0 -55
  468. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_pages.yml +0 -52
  469. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Dataset.yml +0 -55
  470. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article.yml +0 -55
  471. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +0 -55
  472. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Missing_author.yml +0 -49
  473. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +0 -55
  474. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/software_w/version.yml +0 -55
  475. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Another_dataset.yml +0 -55
  476. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting.yml +0 -55
  477. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting_schema_org.yml +0 -115
  478. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Dataset.yml +0 -55
  479. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/container_title.yml +0 -55
  480. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/interactive_resource_without_dates.yml +0 -55
  481. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/journal_article.yml +0 -55
  482. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/keywords_subject_scheme.yml +0 -55
  483. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/maremma.yml +0 -75
  484. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/missing_creator.yml +0 -49
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  486. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/organization_author.yml +0 -52
  487. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/software.yml +0 -55
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  489. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_only_first_page.yml +0 -50
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  491. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +0 -55
  492. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +0 -55
  493. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/datacite_database_attributes.yml +0 -55
  494. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/maremma.yml +0 -75
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  498. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/from_DataCite.yml +0 -55
  499. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/climate_data.yml +0 -55
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  503. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_pages.yml +0 -52
  504. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/maremma.yml +0 -75
  505. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_ORCID_ID.yml +0 -52
  506. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation.yml +0 -55
  507. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation_schema_org.yml +0 -117
  508. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/DOI_not_found.yml +0 -51
  509. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Dataset_in_schema_4_0.yml +0 -55
  510. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru.yml +0 -55
  511. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru_with_doi_in_options.yml +0 -55
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  537. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +0 -55
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  540. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding.yml +0 -106
  541. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +0 -106
  542. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +0 -55
  543. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +0 -106
  544. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +0 -106
  545. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +0 -55
  546. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +0 -55
  547. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/data_catalog.yml +0 -55
  548. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/geo_location_box.yml +0 -55
  549. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +0 -55
  550. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/journal_article.yml +0 -55
  551. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +0 -75
  552. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/series_information.yml +0 -55
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  554. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +0 -55
  555. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting.yml +0 -55
  556. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +0 -117
  557. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml +0 -55
  558. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/journal_article.yml +0 -55
  559. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/with_pages.yml +0 -52
  560. data/spec/fixtures/vivli.xml +0 -1
  561. data/spec/metadata_spec.rb +0 -165
  562. data/spec/readers/bibtex_reader_spec.rb +0 -65
  563. data/spec/readers/citeproc_reader_spec.rb +0 -64
  564. data/spec/readers/codemeta_reader_spec.rb +0 -138
  565. data/spec/readers/crosscite_reader_spec.rb +0 -43
  566. data/spec/readers/crossref_reader_spec.rb +0 -1102
  567. data/spec/readers/datacite_json_reader_spec.rb +0 -82
  568. data/spec/readers/datacite_reader_spec.rb +0 -1762
  569. data/spec/readers/npm_reader_spec.rb +0 -68
  570. data/spec/readers/ris_reader_spec.rb +0 -78
  571. data/spec/readers/schema_org_reader_spec.rb +0 -344
  572. data/spec/spec_helper.rb +0 -95
  573. data/spec/utils_spec.rb +0 -666
  574. data/spec/writers/bibtex_writer_spec.rb +0 -195
  575. data/spec/writers/citation_writer_spec.rb +0 -52
  576. data/spec/writers/citeproc_writer_spec.rb +0 -290
  577. data/spec/writers/codemeta_writer_spec.rb +0 -45
  578. data/spec/writers/crosscite_writer_spec.rb +0 -129
  579. data/spec/writers/crossref_writer_spec.rb +0 -21
  580. data/spec/writers/csv_writer_spec.rb +0 -94
  581. data/spec/writers/datacite_json_writer_spec.rb +0 -128
  582. data/spec/writers/datacite_writer_spec.rb +0 -507
  583. data/spec/writers/jats_writer_spec.rb +0 -201
  584. data/spec/writers/rdf_xml_writer_spec.rb +0 -93
  585. data/spec/writers/ris_writer_spec.rb +0 -207
  586. data/spec/writers/schema_org_writer_spec.rb +0 -369
  587. data/spec/writers/turtle_writer_spec.rb +0 -102
data/spec/fixtures/datacite-geolocation-empty.xml DELETED
@@ -1,159 +0,0 @@
1
- <?xml version="1.0" encoding="utf-8"?>
2
- <resource xmlns="http://datacite.org/schema/kernel-4" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
3
- <identifier identifierType="DOI">10.1594/IEDA/111185</identifier>
4
- <creators>
5
- <creator>
6
- <creatorName>Carlos P Carvajal</creatorName>
7
- <givenName>Carlos</givenName>
8
- <familyName>Carvajal</familyName>
9
- </creator>
10
- <creator>
11
- <creatorName>Gerilyn S Soreghan</creatorName>
12
- <givenName>Gerilyn</givenName>
13
- <familyName>Soreghan</familyName>
14
- </creator>
15
- <creator>
16
- <creatorName>Peter E Isaacson</creatorName>
17
- <givenName>Peter</givenName>
18
- <familyName>Isaacson</familyName>
19
- </creator>
20
- </creators>
21
- <titles>
22
- <title>Geochemical and grain-size analyses of atmospheric dusts from Pennsylvanian carbonates of the Copacabana Formation (Madre de Dios Basin, Bolivia)</title>
23
- </titles>
24
- <publisher>EarthChem</publisher>
25
- <publicationYear>2018</publicationYear>
26
- <subjects>
27
- <subject subjectScheme="coverage scope">Global</subject>
28
- </subjects>
29
- <dates>
30
- <date dateType="Available">2018-06-21</date>
31
- <date dateType="Created">2018-06-20</date>
32
- </dates>
33
- <language>en</language>
34
- <resourceType resourceTypeGeneral="Dataset">Dataset</resourceType>
35
- <alternateIdentifiers>
36
- <alternateIdentifier alternateIdentifierType="URL">http://www.earthchem.org/library/browse/view?id=1185</alternateIdentifier>
37
- </alternateIdentifiers>
38
- <relatedIdentifiers>
39
- <relatedIdentifier relatedIdentifierType="DOI" relationType="IsReferencedBy">10.1016/j.gr.2018.02.007</relatedIdentifier>
40
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0001</relatedIdentifier>
41
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0002</relatedIdentifier>
42
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0003</relatedIdentifier>
43
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0004</relatedIdentifier>
44
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0005</relatedIdentifier>
45
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0006</relatedIdentifier>
46
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0007</relatedIdentifier>
47
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0008</relatedIdentifier>
48
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0009</relatedIdentifier>
49
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000A</relatedIdentifier>
50
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000B</relatedIdentifier>
51
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000C</relatedIdentifier>
52
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000D</relatedIdentifier>
53
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000E</relatedIdentifier>
54
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000F</relatedIdentifier>
55
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000G</relatedIdentifier>
56
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000H</relatedIdentifier>
57
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000I</relatedIdentifier>
58
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000J</relatedIdentifier>
59
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000K</relatedIdentifier>
60
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- <description descriptionType="Abstract">The temperature pattern is attributed to a superposition of thermal and hydraulic processes. In the deeper borehole (HSDP-2, depth 3.1 km) detailed temperature monitoring was performed. Temperature measurements reveal two different thermal regimes. The upper part is characterised by cold temperatures and a negative temperature gradient similar to those observed in the shallow pilot borehole. Below 1100 m, increasing temperatures are observed. Different processes, such as topographically driven groundwater flow, ingress of salt water and conductive previous termheatnext term flow are investigated by numerical modeling. A pure conductive scenario fails to match the temperature measurements, implying that both borehole sections are overprinted by advective conditions. Coupled fluid and previous termheatnext term flow modeling with solute transport yield results that agree with observed temperatures. These data were taken at 07/05/1999 from 02.30 a.m. to 07.30 a.m.</description>
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