bolognese 1.9.18 → 2.3.9

data/spec/writers/datacite_writer_spec.rb

@@ -1,428 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as datacite xml" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("JournalArticle")
-      expect(datacite.dig("titles", "title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(27)
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("relatedIdentifierType"=>"ISSN", "relationType"=>"IsPartOf", "__content__"=>"2050-084X", "resourceTypeGeneral"=>"Collection")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier")[1]).to eq("relatedIdentifierType"=>"DOI", "relationType"=>"References", "__content__"=>"10.1038/nature02100")
-      expect(datacite.dig("rightsList", "rights")).to eq("rightsURI"=>"https://creativecommons.org/licenses/by/3.0/legalcode", "rightsIdentifier"=>"cc-by-3.0", "rightsIdentifierScheme"=>"SPDX", "schemeURI"=>"https://spdx.org/licenses/", "__content__"=>"Creative Commons Attribution 3.0 Unported")
-      expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(4)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier" => {"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
-    end
-
-    it "with ORCID ID" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("JournalArticle")
-      expect(datacite.dig("creators", "creator").count).to eq(7)
-      expect(datacite.dig("creators", "creator")[2]).to eq("creatorName" => {"__content__"=>"Hernandez, Beatriz", "nameType"=>"Personal"},
-        "familyName" => "Hernandez",
-        "givenName" => "Beatriz",
-        "affiliation" => ["War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA", "Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94304, USA"],
-        "nameIdentifier" => {"nameIdentifierScheme"=>"ORCID", "schemeURI"=>"https://orcid.org", "__content__"=>"https://orcid.org/0000-0003-2043-4925"})
-    end
-
-    it "with editor" do
-      input = "https://doi.org/10.1371/journal.pone.0000030"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("contributors", "contributor")).to eq("contributorName"=>{"__content__"=>"Janbon, Guilhem", "nameType"=>"Personal"}, "contributorType"=>"Editor", "familyName"=>"Janbon", "givenName"=>"Guilhem")
-    end
-
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("JournalArticle")
-      expect(datacite.dig("titles", "title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("descriptions", "description").first).to eq("__content__"=>"eLife, 3", "descriptionType"=>"SeriesInformation")
-      expect(datacite.dig("descriptions", "description", 1, "__content__")).to start_with("Among various advantages, their small size makes model organisms preferred subjects of investigation.")
-      expect(datacite.dig("creators", "creator").count).to eq(5)
-      expect(datacite.dig("creators", "creator").first).to eq("creatorName"=>{"__content__"=>"Sankar, Martial", "nameType"=>"Personal"}, "familyName"=>"Sankar", "givenName"=>"Martial")
-    end
-
-    it "BlogPosting Citeproc JSON" do
-      input = fixture_path + "citeproc.json"
-      subject = Bolognese::Metadata.new(input: input, from: "citeproc")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Text")
-      expect(datacite.dig("titles", "title")).to eq("Eating your own Dog Food")
-      expect(datacite.dig("descriptions", "description").first).to eq("__content__"=>"DataCite Blog", "descriptionType"=>"SeriesInformation")
-      expect(datacite.dig("descriptions", "description", 1, "__content__")).to start_with("Eating your own dog food")
-      expect(datacite.dig("creators", "creator")).to eq("creatorName"=>"Fenner, Martin", "familyName"=>"Fenner", "givenName"=>"Martin")
-    end
-
-    it "rdataone" do
-      input = fixture_path + 'codemeta.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("R Interface to the DataONE REST API")
-      expect(datacite.dig("creators", "creator")).to eq([{"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Jones, Matt", "nameType"=>"Personal"},
-                                                          "givenName"=>"Matt",
-                                                          "familyName"=>"Jones",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0003-0077-4738"}},
-                                                         {"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Slaughter, Peter", "nameType"=>"Personal"},
-                                                           "givenName"=>"Peter",
-                                                           "familyName"=>"Slaughter",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0002-2192-403X"}},
-                                                         {"creatorName"=>{"__content__"=>"University Of California, Santa Barbara", "nameType"=>"Organizational"}}])
-      expect(datacite.fetch("version")).to eq("2.0.0")
-    end
-
-    it "rdataone and codemeta_v2" do
-      input = fixture_path + 'codemeta_v2.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("R Interface to the DataONE REST API")
-      expect(datacite.dig("creators", "creator")).to eq([{"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Jones, Matt", "nameType"=>"Personal"},
-                                                          "givenName"=>"Matt",
-                                                          "familyName"=>"Jones",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0003-0077-4738"}},
-                                                         {"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Slaughter, Peter", "nameType"=>"Personal"},
-                                                           "givenName"=>"Peter",
-                                                           "familyName"=>"Slaughter",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0002-2192-403X"}},
-                                                         {"creatorName"=>{"__content__"=>"University Of California, Santa Barbara", "nameType"=>"Organizational"}}])
-      expect(datacite.fetch("version")).to eq("2.0.0")
-    end
-
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(datacite.dig("creators", "creator")).to eq("affiliation"=>"DataCite", "creatorName"=> {"__content__"=>"Fenner, Martin", "nameType"=>"Personal"}, "givenName"=>"Martin", "familyName"=>"Fenner", "nameIdentifier"=>{"__content__"=>"https://orcid.org/0000-0003-0077-4738", "nameIdentifierScheme"=>"ORCID", "schemeURI"=>"https://orcid.org"})
-    end
-
-    it "with version" do
-      input = "https://doi.org/10.5281/zenodo.28518"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.5281/zenodo.28518")
-      expect(subject.identifiers).to eq([{"identifier"=>"https://zenodo.org/record/28518", "identifierType"=>"URL"}])
-      expect(subject.types).to eq("bibtex" => "misc",
-        "citeproc" => "article",
-        "resourceTypeGeneral" => "Software",
-        "ris" => "COMP",
-        "schemaOrg" => "SoftwareSourceCode")
-      expect(subject.creators.length).to eq(2)
-      expect(subject.creators.first).to eq("affiliation" => [{"name"=>"University of Washington"}],
-        "familyName" => "Vanderplas",
-        "givenName" => "Jake",
-        "name" => "Vanderplas, Jake",
-        "nameIdentifiers" => [],
-        "nameType" => "Personal")
-      expect(subject.titles).to eq([{"title"=>"Supersmoother: Minor Bug Fix Release"}])
-      expect(subject.rights_list).to eq([{"rights"=>"Open Access", "rightsUri"=>"info:eu-repo/semantics/openAccess"}])
-      expect(subject.dates).to eq([{"date"=>"2015-08-19", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2015")
-      expect(subject.version_info).to eq("v0.3.2")
-      expect(subject.publisher).to eq("Zenodo")
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
-      expect(subject.datacite).to include("<version>v0.3.2</version>")
-    end
-
-    it "Text pass-thru" do
-      input = "https://doi.org/10.23640/07243.5153971"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.23640/07243.5153971")
-      expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"Paper", "resourceTypeGeneral"=>"Text", "ris"=>"RPRT", "schemaOrg"=>"ScholarlyArticle")
-      expect(subject.creators.length).to eq(20)
-      expect(subject.creators.first).to eq("nameType"=>"Personal", "familyName" => "Paglione", "givenName" => "Laura", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-3188-6273", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name" => "Paglione, Laura", "affiliation" => [])
-      expect(subject.titles).to eq([{"title"=>"Recommendation of: ORCID Works Metadata Working Group"}])
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Zero v1.0 Universal",
-        "rightsIdentifier"=>"cc0-1.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/publicdomain/zero/1.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2017-06-28", "dateType"=>"Created"}, {"date"=>"2017-06-28", "dateType"=>"Updated"}, {"date"=>"2017", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2017")
-      expect(subject.publisher).to eq("Figshare")
-      expect(subject.subjects).to eq([{"subject"=>"Information Systems"},
-       {"schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf",
-        "subject"=>"FOS: Computer and information sciences",
-        "subjectScheme"=>"Fields of Science and Technology (FOS)"}])
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
-      expect(subject.datacite).to end_with("</resource>")
-    end
-
-    it "Text pass-thru with doi in options" do
-      input = "https://doi.org/10.23640/07243.5153971"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", doi: "10.5072/07243.5153971")
-      expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.5072/07243.5153971")
-      expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"Paper", "resourceTypeGeneral"=>"Text", "ris"=>"RPRT", "schemaOrg"=>"ScholarlyArticle")
-      expect(subject.creators.length).to eq(20)
-      expect(subject.creators.first).to eq("nameType" => "Personal", "familyName" => "Paglione", "givenName" => "Laura", "name" => "Paglione, Laura", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-3188-6273", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}],"affiliation" => [])
-      expect(subject.titles).to eq([{"title"=>"Recommendation of: ORCID Works Metadata Working Group"}])
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Zero v1.0 Universal",
-        "rightsIdentifier"=>"cc0-1.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/publicdomain/zero/1.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2017-06-28", "dateType"=>"Created"}, {"date"=>"2017-06-28", "dateType"=>"Updated"}, {"date"=>"2017", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2017")
-      expect(subject.publisher).to eq("Figshare")
-      expect(subject.subjects).to eq([{"subject"=>"Information Systems"},
-       {"schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf",
-        "subject"=>"FOS: Computer and information sciences",
-        "subjectScheme"=>"Fields of Science and Technology (FOS)"}])
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
-      expect(subject.datacite).to end_with("</resource>")
-    end
-
-    it "Dataset in schema 4.0" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-      expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"dataset", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
-      expect(subject.creators.length).to eq(8)
-      expect(subject.creators.first).to eq("nameType" => "Personal", "name"=>"Ollomo, Benjamin", "givenName"=>"Benjamin", "familyName"=>"Ollomo", "nameIdentifiers"=>[], "affiliation" => [{"affiliationIdentifier"=>"https://ror.org/01wyqb997", "affiliationIdentifierScheme"=>"ROR", "name"=>"Centre International de Recherches Médicales de Franceville"}])
-      expect(subject.titles).to eq([{"title"=>"Data from: A new malaria agent in African hominids."}])
-      expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Zero v1.0 Universal",
-        "rightsIdentifier"=>"cc0-1.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/publicdomain/zero/1.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2011-02-01T17:22:41Z", "dateType"=>"Available"}, {"date"=>"2011", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2011")
-      expect(subject.related_identifiers.length).to eq(1)
-      expect(subject.related_identifiers.last).to eq("relatedIdentifier" => "10.1371/journal.ppat.1000446",
-        "relatedIdentifierType" => "DOI","relationType"=>"Cites")
-      expect(subject.publisher).to eq("Dryad")
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
-
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.fetch("xsi:schemaLocation", "").split(" ").first).to eq("http://datacite.org/schema/kernel-4")
-    end
-
-    it "Affiliation" do
-      input = fixture_path + 'datacite-example-geolocation-2.xml'
-      doi = "10.6071/Z7WC73"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-      expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"dataset", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
-      expect(subject.creators.length).to eq(6)
-      expect(subject.creators.first).to eq("affiliation"=>[{"name"=>"UC Merced"}, {"name"=>"NSF"}], "familyName"=>"Bales", "givenName"=>"Roger", "name"=>"Bales, Roger", "nameType"=>"Personal", "nameIdentifiers"=>[])
-      expect(subject.titles).to eq([{"title"=>"Southern Sierra Critical Zone Observatory (SSCZO), Providence Creek meteorological data, soil moisture and temperature, snow depth and air temperature"}])
-      expect(subject.id).to eq("https://doi.org/10.6071/z7wc73")
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Attribution 4.0 International",
-        "rightsIdentifier"=>"cc-by-4.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/licenses/by/4.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2014-10-17", "dateType"=>"Updated"}, {"date"=>"2016-03-14T17:02:02Z", "dateType"=>"Available"}, {"date"=>"2013", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2013")
-      expect(subject.publisher).to eq("UC Merced")
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
-
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.fetch("xsi:schemaLocation", "").split(" ").first).to eq("http://datacite.org/schema/kernel-4")
-      expect(datacite.dig("creators", "creator", 0, "affiliation")).to eq(["UC Merced", "NSF"])
-    end
-
-    it "with data citation schema.org" do
-      input = "https://blog.datacite.org/eating-your-own-dog-food/"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("Eating your own Dog Food")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").count).to eq(3)
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("__content__"=>"10.5438/0000-00ss", "relatedIdentifierType"=>"DOI", "relationType"=>"IsPartOf", "resourceTypeGeneral"=>"Text")
-    end
-
-    it "DOI not found" do
-      input = "https://doi.org/10.4124/05F6C379-DD68-4CDB-880D-33D3E9576D52/1"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be false
-      expect(subject.id).to eq("https://doi.org/10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(subject.doi).to eq("10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(subject.agency).to eq("datacite")
-      expect(subject.state).to eq("not_found")
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite["identifier"]).to eq("identifierType"=>"DOI", "__content__"=>"10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(datacite["xmlns"]).to eq("http://datacite.org/schema/kernel-4")
-    end
-
-    it "no input" do
-      input = nil
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", doi: "10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(subject.valid?).to be false
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite["identifier"]).to eq("identifierType"=>"DOI", "__content__"=>"10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(datacite["xmlns"]).to eq("http://datacite.org/schema/kernel-4")
-    end
-  end
-
-  context "change metadata as datacite xml" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.doi = "10.5061/DRYAD.8515"
-      subject.titles = [{ "title" => "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth" }]
-      subject.types = { "schemaOrg" => "Dataset", "resourceTypeGeneral" => "Dataset" }
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.5061/DRYAD.8515")
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
-      expect(datacite.dig("titles", "title")).to eq("Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(27)
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("__content__"=>"2050-084X", "relatedIdentifierType"=>"ISSN", "relationType"=>"IsPartOf", "resourceTypeGeneral"=>"Collection")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier")[1]).to eq("relatedIdentifierType"=>"DOI", "relationType"=>"References", "__content__"=>"10.1038/nature02100")
-      expect(datacite.dig("rightsList", "rights")).to eq("rightsURI"=>"https://creativecommons.org/licenses/by/3.0/legalcode", "rightsIdentifier"=>"cc-by-3.0", "rightsIdentifierScheme"=>"SPDX", "schemeURI"=>"https://spdx.org/licenses/", "__content__"=>"Creative Commons Attribution 3.0 Unported")
-      expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(4)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier" => {"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
-    end
-
-    it "change description" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.descriptions = { "description" => "This is an abstract." }
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("descriptions", "description")).to eq([{"__content__"=>"eLife, 3, e01567", "descriptionType"=>"SeriesInformation"}, {"__content__"=>"This is an abstract.", "descriptionType"=>"Abstract"}])
-    end
-
-    it "change description no input" do
-      input = nil
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", doi: "10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      subject.descriptions = "This is an abstract."
-      expect(subject.valid?).to be false
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("descriptions", "description")).to eq("descriptionType"=>"Abstract", "__content__"=>"This is an abstract.")
-    end
-
-    it "required metadata no input" do
-      input = nil
-      subject = Bolognese::Metadata.new(input: input, doi: "10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      subject.creators = [{"creatorName"=>"Fenner, Martin", "givenName"=>"Martin", "familyName"=>"Fenner"}]
-      subject.titles = [{ "title" => "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth" }]
-      subject.types = { "schemaOrg" => "Dataset", "resourceTypeGeneral" => "Dataset" }
-      subject.publication_year = "2011"
-      subject.state = "findable"
-      expect(subject.exists?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
-      expect(datacite.dig("titles", "title")).to eq("Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-
-    end
-
-    it "change license" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.rights_list = [{ "rights_uri" => "https://creativecommons.org/licenses/by-nc-sa/4.0", "rights" => "Creative Commons Attribution-NonCommercial-ShareAlike" }]
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("rightsList", "rights")).to eq("Creative Commons Attribution-NonCommercial-ShareAlike")
-    end
-
-    it "change license url" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.rights_list = [{ "rightsUri" => "https://creativecommons.org/licenses/by-nc-sa/4.0" }]
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("rightsList", "rights")).to eq("rightsURI"=>"https://creativecommons.org/licenses/by-nc-sa/4.0")
-    end
-
-    it "change license name" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.rights_list = [{ "rights" => "Creative Commons Attribution-NonCommercial-ShareAlike" }]
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("rightsList", "rights")).to eq("Creative Commons Attribution-NonCommercial-ShareAlike")
-    end
-
-    it "change state" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      expect(subject.state).to eq("findable")
-      subject.state = "registered"
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.7554/elife.01567")
-      expect(subject.state).to eq("registered")
-    end
-
-    it "change identifiers" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      expect(subject.identifiers).to eq([{"identifier"=>"e01567", "identifierType"=>"article_number"}])
-      subject.identifiers = [{ "identifierType" => "article_number", "identifier" => "abc" }]
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.7554/elife.01567")
-      expect(subject.identifiers).to eq([{"identifier"=>"abc", "identifierType"=>"article_number"}])
-    end
-
-    it "validates against schema" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.doi = "123"
-      subject.titles = "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth"
-      subject.types = { "schemaOrg" => "Dataset", "resourceTypeGeneral" => "Dataset" }
-      expect(subject.doi).to eq("123")
-      expect(subject.valid?).to be true
-    end
-
-    it "from schema_org gtex" do
-      input = fixture_path + "schema_org_gtex.json"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.25491/d50j-3083")
-      expect(datacite.dig("creators", "creator").count).to eq(1)
-      expect(datacite.dig("creators", "creator")).to eq("creatorName"=>{"__content__"=>"The GTEx Consortium", "nameType"=>"Organizational"})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
-      expect(datacite.dig("resourceType", "__content__")).to eq("Gene expression matrices")
-      expect(datacite.dig("titles", "title")).to eq("Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery")
-      expect(datacite.dig("version")).to eq("v7")
-      expect(datacite.dig("publisher")).to eq("GTEx")
-      expect(datacite.dig("descriptions", "description")).to eq("__content__"=>"GTEx", "descriptionType"=>"SeriesInformation")
-      expect(datacite.dig("publicationYear")).to eq("2017")
-      expect(datacite.dig("dates", "date")).to eq("__content__"=>"2017", "dateType"=>"Issued")
-      expect(datacite.dig("subjects", "subject")).to eq(["gtex", "annotation", "phenotype", "gene regulation", "transcriptomics"])
-      expect(datacite.dig("alternateIdentifiers", "alternateIdentifier")).to eq("__content__"=>"687610993", "alternateIdentifierType"=>"md5")
-      expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(7)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderIdentifier" => {"__content__"=>"https://doi.org/10.13039/100000065", "funderIdentifierType"=>"Crossref Funder ID"},"funderName" => "National Institute of Neurological Disorders and Stroke (NINDS)")
-    end
-  end
-end