bolognese 1.8.6 → 1.8.12

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Files changed (14) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +14 -16
  3. data/lib/bolognese/readers/crossref_reader.rb +20 -3
  4. data/lib/bolognese/utils.rb +4 -1
  5. data/lib/bolognese/version.rb +1 -1
  6. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml +100 -0
  7. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml +122 -0
  8. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_issn.yml +98 -0
  9. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +449 -0
  10. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/peer_review.yml +96 -0
  11. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/cc-by_3_0_us.yml +104 -0
  12. data/spec/readers/crossref_reader_spec.rb +118 -2
  13. data/spec/readers/datacite_reader_spec.rb +11 -0
  14. metadata +8 -2
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+ Z, Schapire RE, Troyanskaya OG: Hierarchical multi-label prediction of gene
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+ R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt
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+ JF, Gerstein M: A Bayesian networks approach for predicting protein-protein
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+ \ <unstructured_citation>Lin N, Wu B, Jansen R, Gerstein
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+ M, Zhao H: Information assessment on predicting protein-protein interactions.
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+ \ <journal_title>Proc Natl Acad Sci USA</journal_title>\r\n
217
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218
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+ \ <unstructured_citation>Troyanskaya OG, Dolinski K, Owen
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+ AB, Altman RB, Botstein D: A Bayesian framework for combining heterogeneous
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+ \ </citation>\r\n <citation key=\"570_CR11\">\r\n
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+ \ <journal_title>Nucleic Acids Res</journal_title>\r\n <author>M
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+ \ <doi>10.1093/nar/28.1.27</doi>\r\n <unstructured_citation>Kanehisa
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+ M, Goto S: KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res.
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+ \ <citation key=\"570_CR12\">\r\n <journal_title>Bioinformatics</journal_title>\r\n
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+ \ <author>Y Yamanishi</author>\r\n <volume>20</volume>\r\n
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+ \ <issue>Suppl 1</issue>\r\n <first_page>I363</first_page>\r\n
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+ \ <unstructured_citation>Yamanishi Y, Vert JP, Kanehisa
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+ M: Protein network inference from multiple genomic data: a supervised approach.
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+ \ </citation>\r\n <citation key=\"570_CR13\">\r\n
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+ \ <unstructured_citation>GRIFn Home Page. [\r\n http://function.princeton.edu/GRIFn\r\n
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+ \ <author>AC Gavin</author>\r\n <volume>415</volume>\r\n
250
+ \ <issue>6868</issue>\r\n <first_page>141</first_page>\r\n
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+ \ <cYear>2002</cYear>\r\n <doi>10.1038/415141a</doi>\r\n
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+ \ <unstructured_citation>Gavin AC, Bosche M, Krause R, Grandi
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+ P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM: Functional
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+ organization of the yeast proteome by systematic analysis of protein complexes.
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+ \ </citation>\r\n <citation key=\"570_CR15\">\r\n
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+ \ <journal_title>J Mol Biol</journal_title>\r\n <author>E
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+ Sprinzak</author>\r\n <volume>327</volume>\r\n <issue>5</issue>\r\n
259
+ \ <first_page>919</first_page>\r\n <cYear>2003</cYear>\r\n
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+ E, Sattath S, Margalit H: How reliable are experimental protein-protein interaction
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+ \ </citation>\r\n <citation key=\"570_CR16\">\r\n
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+ \ <journal_title>Nature</journal_title>\r\n <author>P
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+ \ <doi>10.1038/35001009</doi>\r\n <unstructured_citation>Uetz
268
+ P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan
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+ V, Srinivasan M, Pochart P: A comprehensive analysis of protein-protein interactions
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+ \ <journal_title>Nature</journal_title>\r\n <author>C
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+ \ <first_page>399</first_page>\r\n <cYear>2002</cYear>\r\n
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+ \ <doi>10.1038/nature750</doi>\r\n <unstructured_citation>von
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+ Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P: Comparative
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94
+ http_version:
95
+ recorded_at: Sat, 22 Aug 2020 09:09:11 GMT
96
+ recorded_with: VCR 3.0.3