bolognese 1.8.5 → 1.8.10

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Files changed (13) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +16 -18
  3. data/bolognese.gemspec +1 -1
  4. data/lib/bolognese/readers/crossref_reader.rb +6 -2
  5. data/lib/bolognese/utils.rb +4 -1
  6. data/lib/bolognese/version.rb +1 -1
  7. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml +122 -0
  8. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +449 -0
  9. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/peer_review.yml +96 -0
  10. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/cc-by_3_0_us.yml +104 -0
  11. data/spec/readers/crossref_reader_spec.rb +83 -2
  12. data/spec/readers/datacite_reader_spec.rb +11 -0
  13. metadata +8 -10
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA256:
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- data.tar.gz: cc6167a8111867f03168c121a11db290671f2bbaf8a3ea2e295faa339b81ed12
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+ metadata.gz: a5195c3b55a761942636c85d4f09331f45a91f4099cc49286e4b16815e8bb001
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  SHA512:
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- metadata.gz: fb45a458092cde73a13a28a8208c4c115f0a6386afdb53cf9b25c89ff85de8767c7c0d6a368c056a3f736961e2e5ea9589ec38f212c038b105ceb32e6d435d9c
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+ metadata.gz: e102cd718faaba83563b8ba33ff13e30c8dff7c491be161bab401197f695fdbea74b57c9371dfcb922eca7ccf2de7d49e457aa46b0fbece35c407c2b949cad66
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+ data.tar.gz: bd51818f76c120eac5d8a1cf276d5df845fefb7a7eaeba477a2a47d06d1965aa9848e9a357c5d532a85aace58e92361db938afa8f0f1eb30e8ab59839a86cddd
data/Gemfile.lock CHANGED
@@ -1,7 +1,7 @@
1
1
  PATH
2
2
  remote: .
3
3
  specs:
4
- bolognese (1.8.5)
4
+ bolognese (1.8.10)
5
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  activesupport (>= 4.2.5)
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  benchmark_methods (~> 0.7)
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  bibtex-ruby (>= 5.1.0)
@@ -25,12 +25,12 @@ PATH
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  postrank-uri (~> 1.0, >= 1.0.18)
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  rdf-rdfxml (~> 3.1)
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  rdf-turtle (~> 3.1)
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- thor (~> 1.0, >= 1.0.1)
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+ thor (>= 0.19)
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  GEM
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31
  remote: https://rubygems.org/
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  specs:
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- activesupport (6.0.3.2)
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+ activesupport (6.0.3.4)
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  concurrent-ruby (~> 1.0, >= 1.0.2)
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  i18n (>= 0.7, < 2)
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  minitest (~> 5.1)
@@ -48,9 +48,8 @@ GEM
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  citeproc (~> 1.0, >= 1.0.9)
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  csl (~> 1.5)
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  colorize (0.8.1)
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- concurrent-ruby (1.1.6)
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- crack (0.4.3)
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- safe_yaml (~> 1.0.0)
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+ concurrent-ruby (1.1.7)
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+ crack (0.4.4)
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  crass (1.0.6)
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  csl (1.5.1)
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  namae (~> 1.0)
@@ -74,7 +73,7 @@ GEM
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  faraday (>= 0.7.4, < 1.0)
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  gender_detector (0.1.2)
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  unicode_utils (>= 1.3.0)
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- haml (5.1.2)
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+ haml (5.2.0)
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  temple (>= 0.8.0)
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  tilt
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  hamster (3.0.0)
@@ -100,10 +99,10 @@ GEM
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  optimist (~> 3)
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  latex-decode (0.3.1)
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  link_header (0.0.8)
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- loofah (2.6.0)
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+ loofah (2.7.0)
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  crass (~> 1.0.2)
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  nokogiri (>= 1.5.9)
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- maremma (4.7.1)
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+ maremma (4.7.2)
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  activesupport (>= 4.2.5)
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  addressable (>= 2.3.6)
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  builder (~> 3.2, >= 3.2.2)
@@ -115,13 +114,13 @@ GEM
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  oj (>= 2.8.3)
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  oj_mimic_json (~> 1.0, >= 1.0.1)
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  mini_portile2 (2.4.0)
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- minitest (5.14.1)
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+ minitest (5.14.2)
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  multi_json (1.15.0)
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  multipart-post (2.1.1)
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  namae (1.0.1)
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  nokogiri (1.10.10)
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  mini_portile2 (~> 2.4.0)
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- oj (3.10.8)
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+ oj (3.10.14)
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  oj_mimic_json (1.0.1)
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  optimist (3.0.1)
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  postrank-uri (1.0.24)
@@ -133,7 +132,7 @@ GEM
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  rack-test (0.8.3)
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  rack (>= 1.0, < 3)
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  rake (12.3.3)
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- rdf (3.1.4)
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+ rdf (3.1.6)
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  hamster (~> 3.0)
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  link_header (~> 0.0, >= 0.0.8)
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  rdf-aggregate-repo (3.1.0)
@@ -153,7 +152,7 @@ GEM
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  rdf-turtle (3.1.2)
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  ebnf (~> 2.0)
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  rdf (~> 3.1, >= 3.1.2)
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- rdf-vocab (3.1.7)
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+ rdf-vocab (3.1.8)
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  rdf (~> 3.1, >= 3.1.2)
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  rdf-xsd (3.1.0)
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  rdf (~> 3.1)
@@ -161,7 +160,7 @@ GEM
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  rspec-core (~> 3.9.0)
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  rspec-expectations (~> 3.9.0)
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  rspec-mocks (~> 3.9.0)
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- rspec-core (3.9.2)
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+ rspec-core (3.9.3)
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  rspec-support (~> 3.9.3)
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  rspec-expectations (3.9.2)
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  diff-lcs (>= 1.2.0, < 2.0)
@@ -173,12 +172,11 @@ GEM
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  rspec-xsd (0.1.0)
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  nokogiri (~> 1.6)
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  rspec (~> 3)
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- safe_yaml (1.0.5)
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  scanf (1.0.0)
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- simplecov (0.18.5)
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+ simplecov (0.19.0)
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  docile (~> 1.1)
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  simplecov-html (~> 0.11)
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- simplecov-html (0.12.2)
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+ simplecov-html (0.12.3)
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  sxp (1.1.0)
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  rdf (~> 3.1)
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  temple (0.8.2)
@@ -189,7 +187,7 @@ GEM
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  thread_safe (~> 0.1)
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  unicode_utils (1.4.0)
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  vcr (3.0.3)
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- webmock (3.8.3)
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+ webmock (3.9.1)
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  addressable (>= 2.3.6)
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  crack (>= 0.3.2)
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  hashdiff (>= 0.4.0, < 2.0.0)
data/bolognese.gemspec CHANGED
@@ -23,7 +23,7 @@ Gem::Specification.new do |s|
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  s.add_dependency 'builder', '~> 3.2', '>= 3.2.2'
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  s.add_dependency 'activesupport', '>= 4.2.5'
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  s.add_dependency 'bibtex-ruby', '>= 5.1.0'
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- s.add_dependency 'thor', '~> 1.0', '>= 1.0.1'
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+ s.add_dependency 'thor', '>= 0.19'
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  s.add_dependency 'colorize', '~> 0.8.1'
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  s.add_dependency 'namae', '~> 1.0'
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  s.add_dependency 'edtf', '~> 3.0', '>= 3.0.4'
data/lib/bolognese/readers/crossref_reader.rb CHANGED
@@ -85,6 +85,10 @@ module Bolognese
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  when "report_paper"
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  bibliographic_metadata = meta.dig("crossref", "report_paper", "report_paper_metadata").to_h
87
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  resource_type = "report"
88
+ when "peer_review"
89
+ bibliographic_metadata = meta.dig("crossref", "peer_review")
90
+ when "dissertation"
91
+ bibliographic_metadata = meta.dig("crossref", "dissertation")
88
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  end
89
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90
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  resource_type = (resource_type || model).to_s.underscore.camelcase.presence
@@ -111,7 +115,7 @@ module Bolognese
111
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  end
112
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  end.compact
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  else
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- [{ "title" => ":{unav)" }]
118
+ [{ "title" => ":(unav)" }]
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  end
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117
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  date_published = crossref_date_published(bibliographic_metadata)
@@ -234,7 +238,7 @@ module Bolognese
234
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  end
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236
240
  def crossref_people(bibliographic_metadata, contributor_role)
237
- person = bibliographic_metadata.dig("contributors", "person_name")
241
+ person = bibliographic_metadata.dig("contributors", "person_name") || bibliographic_metadata.dig("person_name")
238
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  organization = Array.wrap(bibliographic_metadata.dig("contributors", "organization"))
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  person = [{ "name" => ":(unav)", "contributor_role"=>"author" }] if contributor_role == "author" && Array.wrap(person).select { |a| a["contributor_role"] == "author" }.blank? && Array.wrap(organization).select { |a| a["contributor_role"] == "author" }.blank?
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data/lib/bolognese/utils.rb CHANGED
@@ -7,6 +7,7 @@ module Bolognese
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  "https://creativecommons.org/licenses/by/2.0" => "https://creativecommons.org/licenses/by/2.0/legalcode",
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  "https://creativecommons.org/licenses/by/2.5" => "https://creativecommons.org/licenses/by/2.5/legalcode",
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  "https://creativecommons.org/licenses/by/3.0" => "https://creativecommons.org/licenses/by/3.0/legalcode",
10
+ "https://creativecommons.org/licenses/by/3.0/us" => "https://creativecommons.org/licenses/by/3.0/legalcode",
10
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  "https://creativecommons.org/licenses/by/4.0" => "https://creativecommons.org/licenses/by/4.0/legalcode",
11
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  "https://creativecommons.org/licenses/by-nc/1.0" => "https://creativecommons.org/licenses/by-nc/1.0/legalcode",
12
13
  "https://creativecommons.org/licenses/by-nc/2.0" => "https://creativecommons.org/licenses/by-nc/2.0/legalcode",
@@ -132,7 +133,8 @@ module Bolognese
132
133
  "ReferenceEntry" => nil,
133
134
  "JournalVolume" => "PublicationVolume",
134
135
  "BookSet" => nil,
135
- "PostedContent" => "ScholarlyArticle"
136
+ "PostedContent" => "ScholarlyArticle",
137
+ "PeerReview" => "Review"
136
138
  }
137
139
 
138
140
  CR_TO_BIB_TRANSLATIONS = {
@@ -218,6 +220,7 @@ module Bolognese
218
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  "ScholarlyArticle" => "Text",
219
221
  "Thesis" => "Text",
220
222
  "Service" => "Service",
223
+ "Review" => "Text",
221
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  "SoftwareSourceCode" => "Software",
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  "VideoObject" => "Audiovisual",
223
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  "WebPage" => "Text",
data/lib/bolognese/version.rb CHANGED
@@ -1,3 +1,3 @@
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1
  module Bolognese
2
- VERSION = "1.8.5"
2
+ VERSION = "1.8.10"
3
3
  end
data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml ADDED
@@ -0,0 +1,122 @@
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+ ---
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+ http_interactions:
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+ - request:
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+ method: get
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+ uri: https://doi.org/ra/10.14264
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+ body:
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+ encoding: US-ASCII
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+ string: ''
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+ headers:
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+ User-Agent:
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+ - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
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+ Accept:
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+ - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
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+ response:
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+ status:
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+ code: 200
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+ message: ''
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+ headers:
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+ Date:
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+ - Sat, 22 Aug 2020 09:37:48 GMT
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+ Content-Type:
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+ - application/json;charset=UTF-8
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+ Connection:
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+ - keep-alive
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+ Set-Cookie:
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+ - __cfduid=dd2a5efda710f4da2c27722ecdb7d162d1598089068; expires=Mon, 21-Sep-20
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+ 09:37:48 GMT; path=/; domain=.doi.org; HttpOnly; SameSite=Lax; Secure
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+ Cf-Cache-Status:
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+ - DYNAMIC
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+ Cf-Request-Id:
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+ - 04b72118d7000064a35e821200000001
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+ Expect-Ct:
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+ - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
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+ Strict-Transport-Security:
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+ - max-age=31536000; includeSubDomains; preload
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+ Server:
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+ - cloudflare
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+ Cf-Ray:
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+ - 5c6b9e07ba4164a3-FRA
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+ body:
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+ encoding: ASCII-8BIT
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+ string: |-
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+ [
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+ {
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+ "DOI": "10.14264",
46
+ "RA": "Crossref"
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+ }
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+ ]
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+ http_version:
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+ recorded_at: Sat, 22 Aug 2020 09:37:48 GMT
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+ - request:
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+ method: get
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+ uri: https://api.crossref.org/works/10.14264/uql.2020.791/transform/application/vnd.crossref.unixsd+xml
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+ body:
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+ encoding: US-ASCII
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+ string: ''
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+ headers:
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+ User-Agent:
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+ - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
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+ Accept:
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+ - text/xml
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+ response:
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+ status:
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+ code: 200
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+ message: OK
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+ headers:
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+ Link:
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+ - <http://dx.doi.org/10.14264/uql.2020.791>; rel="canonical", <http://orcid.org/0000-0003-3086-4443>;
69
+ title="Patricia Maree Collingwood"; rel="author"
70
+ Access-Control-Allow-Origin:
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+ - "*"
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+ Access-Control-Allow-Headers:
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+ - X-Requested-With
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+ Content-Length:
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+ - '2769'
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+ Server:
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+ - http-kit
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+ Date:
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+ - Sat, 22 Aug 2020 09:37:49 GMT
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+ X-Rate-Limit-Limit:
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+ - '50'
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+ X-Rate-Limit-Interval:
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+ - 1s
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+ Connection:
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+ - close
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+ body:
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+ encoding: ASCII-8BIT
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+ string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<crossref_result xmlns=\"http://www.crossref.org/qrschema/3.0\"
89
+ version=\"3.0\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://www.crossref.org/qrschema/3.0
90
+ http://www.crossref.org/schemas/crossref_query_output3.0.xsd\">\r\n <query_result>\r\n
91
+ \ <head>\r\n <doi_batch_id>none</doi_batch_id>\r\n </head>\r\n <body>\r\n
92
+ \ <query status=\"resolved\">\r\n <doi type=\"dissertation\">10.14264/uql.2020.791</doi>\r\n
93
+ \ <crm-item name=\"publisher-name\" type=\"string\">University of Queensland
94
+ Library</crm-item>\r\n <crm-item name=\"prefix-name\" type=\"string\">University
95
+ of Queensland Library</crm-item>\r\n <crm-item name=\"member-id\" type=\"number\">5387</crm-item>\r\n
96
+ \ <crm-item name=\"citation-id\" type=\"number\">116937436</crm-item>\r\n
97
+ \ <crm-item name=\"book-id\" type=\"number\">1346666</crm-item>\r\n
98
+ \ <crm-item name=\"deposit-timestamp\" type=\"number\">1591592933</crm-item>\r\n
99
+ \ <crm-item name=\"owner-prefix\" type=\"string\">10.14264</crm-item>\r\n
100
+ \ <crm-item name=\"last-update\" type=\"date\">2020-06-08T05:08:59Z</crm-item>\r\n
101
+ \ <crm-item name=\"created\" type=\"date\">2020-06-08T05:08:58Z</crm-item>\r\n
102
+ \ <crm-item name=\"citedby-count\" type=\"number\">0</crm-item>\r\n
103
+ \ <doi_record>\r\n <crossref xmlns=\"http://www.crossref.org/xschema/1.1\"
104
+ xsi:schemaLocation=\"http://www.crossref.org/xschema/1.1 http://doi.crossref.org/schemas/unixref1.1.xsd\">\r\n
105
+ \ <dissertation>\r\n <person_name sequence=\"first\"
106
+ contributor_role=\"author\">\r\n <given_name>Patricia Maree</given_name>\r\n
107
+ \ <surname>Collingwood</surname>\r\n <ORCID authenticated=\"true\">https://orcid.org/0000-0003-3086-4443</ORCID>\r\n
108
+ \ </person_name>\r\n <titles>\r\n <title>School
109
+ truancy and financial independence during emerging adulthood: a longitudinal
110
+ analysis of receipt of and reliance on cash transfers</title>\r\n </titles>\r\n
111
+ \ <approval_date>\r\n <month>05</month>\r\n <day>25</day>\r\n
112
+ \ <year>2020</year>\r\n </approval_date>\r\n <institution>\r\n
113
+ \ <institution_name>The University of Queensland</institution_name>\r\n
114
+ \ <institution_department>School of Social Science</institution_department>\r\n
115
+ \ </institution>\r\n <degree>PhD Thesis</degree>\r\n
116
+ \ <doi_data>\r\n <doi>10.14264/uql.2020.791</doi>\r\n
117
+ \ <resource>http://espace.library.uq.edu.au/view/UQ:23a1e74</resource>\r\n
118
+ \ </doi_data>\r\n </dissertation>\r\n </crossref>\r\n
119
+ \ </doi_record>\r\n </query>\r\n </body>\r\n </query_result>\r\n</crossref_result>"
120
+ http_version:
121
+ recorded_at: Sat, 22 Aug 2020 09:37:49 GMT
122
+ recorded_with: VCR 3.0.3
data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml ADDED
@@ -0,0 +1,449 @@
1
+ ---
2
+ http_interactions:
3
+ - request:
4
+ method: get
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+ uri: https://doi.org/ra/10.1186
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+ body:
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+ encoding: US-ASCII
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+ string: ''
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+ headers:
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+ User-Agent:
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+ - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
12
+ Accept:
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+ - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
14
+ response:
15
+ status:
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+ code: 200
17
+ message: ''
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+ headers:
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+ Date:
20
+ - Sun, 11 Oct 2020 05:26:31 GMT
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+ Content-Type:
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+ - application/json;charset=UTF-8
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+ Connection:
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+ - keep-alive
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+ Set-Cookie:
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+ 05:26:30 GMT; path=/; domain=.doi.org; HttpOnly; SameSite=Lax; Secure
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+ Cf-Cache-Status:
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+ - DYNAMIC
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+ Cf-Request-Id:
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+ - 05b7b8ff3c000005dc32162200000001
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+ Expect-Ct:
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+ - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
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+ Report-To:
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+ - '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report?lkg-colo=71&lkg-time=1602393991"}],"group":"cf-nel","max_age":604800}'
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+ Nel:
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+ - '{"report_to":"cf-nel","max_age":604800}'
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+ Strict-Transport-Security:
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+ - max-age=31536000; includeSubDomains; preload
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+ Server:
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+ string: |-
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+ [
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+ {
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253
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255
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334
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335
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336
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+ \ <unstructured_citation>Huh WK, Falvo JV, Gerke LC, Carroll
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343
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347
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350
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351
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356
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357
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361
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363
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364
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365
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371
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372
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378
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383
+ K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess
384
+ E: The Biomolecular Interaction Network Database and related tools 2005 update.
385
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386
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391
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407
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+ Jeroen","nameType":"Personal","givenName":"Jeroen","familyName":"Bosman","affiliation":[],"nameIdentifiers":[{"nameIdentifier":"https://orcid.org/0000-0001-5796-2727","nameIdentifierScheme":"ORCID"}]}],"titles":[{"title":"101
96
+ Innovations in Scholarly Communication - the Changing Research Workflow"}],"publisher":"Figshare","container":{},"publicationYear":2015,"subjects":[],"contributors":[],"dates":[{"date":"2015","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"sizes":[],"formats":[],"version":null,"rightsList":[{"rights":"CC-BY","rightsUri":"http://creativecommons.org/licenses/by/3.0/us"}],"descriptions":[],"geoLocations":[],"fundingReferences":[],"xml":"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","url":"https://figshare.com/articles/101_Innovations_in_Scholarly_Communication_the_Changing_Research_Workflow/1286826/1","contentUrl":null,"metadataVersion":0,"schemaVersion":"http://datacite.org/schema/kernel-3","source":null,"isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2016-01-19T13:15:11.000Z","registered":"2016-01-19T13:15:12.000Z","published":"2015","updated":"2020-07-27T15:52:33.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"media":{"data":{"id":"10.6084/m9.figshare.1286826.v1","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}},"included":[{"id":"figshare.ars","type":"clients","attributes":{"name":"figshare
97
+ Academic Research System","symbol":"FIGSHARE.ARS","year":2016,"contactEmail":"danielduduta@figshare.com","alternateName":null,"description":"figshare
98
+ allows researchers to publish all of their research outputs in an easily citable,
99
+ sharable and discoverable manner. All file formats can be published, including
100
+ videos and datasets. Optional peer review process. figshare uses creative
101
+ commons licensing.","language":null,"clientType":"repository","domains":"figshare.com","re3data":"https://doi.org/10.17616/R3PK5R","opendoar":null,"issn":null,"url":"http://figshare.com/","created":"2016-10-12T13:42:35.000Z","updated":"2019-07-27T07:15:48.000Z","isActive":true,"hasPassword":true},"relationships":{"provider":{"data":{"id":"figshare","type":"providers"}},"prefixes":{"data":[{"id":"10.6084","type":"prefixes"}]}}}]}'
102
+ http_version:
103
+ recorded_at: Fri, 21 Aug 2020 11:43:05 GMT
104
+ recorded_with: VCR 3.0.3
data/spec/readers/crossref_reader_spec.rb CHANGED
@@ -179,6 +179,52 @@ describe Bolognese::Metadata, vcr: true do
179
179
  expect(subject.agency).to eq("crossref")
180
180
  end
181
181
 
182
+ it "peer review" do
183
+ input = "https://doi.org/10.7554/elife.55167.sa2"
184
+ subject = Bolognese::Metadata.new(input: input)
185
+ expect(subject.valid?).to be true
186
+ expect(subject.url).to eq("https://elifesciences.org/articles/55167#sa2")
187
+ expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"article-journal", "resourceType"=>"PeerReview", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"Review")
188
+ expect(subject.creators.count).to eq(8)
189
+ expect(subject.creators.last).to eq("affiliation" => [{"name"=>"Center for Computational Mathematics, Flatiron Institute, New York, United States"}],
190
+ "familyName" => "Barnett",
191
+ "givenName" => "Alex H",
192
+ "name" => "Barnett, Alex H",
193
+ "nameType" => "Personal")
194
+ expect(subject.titles).to eq([{"title"=>"Author response: SpikeForest, reproducible web-facing ground-truth validation of automated neural spike sorters"}])
195
+ expect(subject.id).to eq("https://doi.org/10.7554/elife.55167.sa2")
196
+ expect(subject.identifiers).to be_empty
197
+ expect(subject.descriptions).to be_empty
198
+ expect(subject.dates).to include({"date"=>"2020-05-19", "dateType"=>"Issued"})
199
+ expect(subject.publication_year).to eq("2020")
200
+ expect(subject.publisher).to eq("eLife Sciences Publications, Ltd")
201
+ expect(subject.agency).to eq("crossref")
202
+ end
203
+
204
+ it "dissertation" do
205
+ input = "https://doi.org/10.14264/uql.2020.791"
206
+ subject = Bolognese::Metadata.new(input: input)
207
+ expect(subject.valid?).to be true
208
+ expect(subject.url).to eq("http://espace.library.uq.edu.au/view/UQ:23a1e74")
209
+ expect(subject.types).to eq("bibtex"=>"phdthesis", "citeproc"=>"thesis", "resourceType"=>"Dissertation", "resourceTypeGeneral"=>"Text", "ris"=>"THES", "schemaOrg"=>"Thesis")
210
+ expect(subject.creators).to eq([{"familyName"=>"Collingwood",
211
+ "givenName"=>"Patricia Maree",
212
+ "name"=>"Collingwood, Patricia Maree",
213
+ "nameIdentifiers"=>
214
+ [{"nameIdentifier"=>"https://orcid.org/0000-0003-3086-4443",
215
+ "nameIdentifierScheme"=>"ORCID",
216
+ "schemeUri"=>"https://orcid.org"}],
217
+ "nameType"=>"Personal"}])
218
+ expect(subject.titles).to eq([{"title"=>"School truancy and financial independence during emerging adulthood: a longitudinal analysis of receipt of and reliance on cash transfers"}])
219
+ expect(subject.id).to eq("https://doi.org/10.14264/uql.2020.791")
220
+ expect(subject.identifiers).to be_empty
221
+ expect(subject.descriptions).to be_empty
222
+ expect(subject.dates).to include({"date"=>"2020-06-08", "dateType"=>"Issued"})
223
+ expect(subject.publication_year).to eq("2020")
224
+ expect(subject.publisher).to eq("University of Queensland Library")
225
+ expect(subject.agency).to eq("crossref")
226
+ end
227
+
182
228
  it "DOI with SICI DOI" do
183
229
  input = "https://doi.org/10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
184
230
  subject = Bolognese::Metadata.new(input: input)
@@ -287,7 +333,7 @@ describe Bolognese::Metadata, vcr: true do
287
333
  expect(subject.url).to eq("https://dx.plos.org/10.1371/journal.pmed.0030277.g001")
288
334
  expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"article-journal", "resourceType"=>"SaComponent", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
289
335
  expect(subject.creators).to eq([{"name"=>":(unav)", "nameType"=>"Organizational"}])
290
- expect(subject.titles).to eq([{"title"=>":{unav)"}])
336
+ expect(subject.titles).to eq([{"title"=>":(unav)"}])
291
337
  expect(subject.descriptions).to be_empty
292
338
  expect(subject.dates).to eq([{"date"=>"2015-10-20", "dateType"=>"Issued"}, {"date"=>"2018-10-19T17:13:42Z", "dateType"=>"Updated"}])
293
339
  expect(subject.publication_year).to eq("2015")
@@ -509,6 +555,41 @@ describe Bolognese::Metadata, vcr: true do
509
555
  expect(subject.date_registered).to be_nil
510
556
  end
511
557
 
558
+ it "multiple titles with missing" do
559
+ input = "https://doi.org/10.1186/1471-2164-7-187"
560
+ subject = Bolognese::Metadata.new(input: input)
561
+ expect(subject.valid?).to be true
562
+ expect(subject.id).to eq("https://doi.org/10.1186/1471-2164-7-187")
563
+ expect(subject.url).to eq("https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-7-187")
564
+ expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
565
+ expect(subject.creators).to eq([{"familyName"=>"Myers",
566
+ "givenName"=>"Chad L",
567
+ "name"=>"Myers, Chad L",
568
+ "nameType"=>"Personal"},
569
+ {"familyName"=>"Barrett",
570
+ "givenName"=>"Daniel R",
571
+ "name"=>"Barrett, Daniel R",
572
+ "nameType"=>"Personal"},
573
+ {"familyName"=>"Hibbs",
574
+ "givenName"=>"Matthew A",
575
+ "name"=>"Hibbs, Matthew A",
576
+ "nameType"=>"Personal"},
577
+ {"familyName"=>"Huttenhower",
578
+ "givenName"=>"Curtis",
579
+ "name"=>"Huttenhower, Curtis",
580
+ "nameType"=>"Personal"},
581
+ {"familyName"=>"Troyanskaya",
582
+ "givenName"=>"Olga G",
583
+ "name"=>"Troyanskaya, Olga G",
584
+ "nameType"=>"Personal"}])
585
+ expect(subject.titles).to eq([{"title"=>"Finding function: evaluation methods for functional genomic data"}])
586
+ expect(subject.dates).to include({"date"=>"2006-07-25", "dateType"=>"Issued"})
587
+ expect(subject.publication_year).to eq("2006")
588
+ expect(subject.publisher).to eq("Springer Science and Business Media LLC")
589
+ expect(subject.agency).to eq("crossref")
590
+ expect(subject.date_registered).to eq("2020-04-20T16:04:45Z")
591
+ end
592
+
512
593
  it "markup" do
513
594
  input = "https://doi.org/10.1098/rspb.2017.0132"
514
595
  subject = Bolognese::Metadata.new(input: input)
@@ -670,7 +751,7 @@ describe Bolognese::Metadata, vcr: true do
670
751
  expect(subject.url).to eq("http://ectrx.org/forms/ectrxcontentshow.php?doi_id=10.6002/ect.2015.0371")
671
752
  expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"article-journal", "resourceType"=>"JournalIssue", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"PublicationIssue")
672
753
  expect(subject.creators).to eq([{"name"=>":(unav)", "nameType"=>"Organizational"}])
673
- expect(subject.titles).to eq([{"title"=>":{unav)"}])
754
+ expect(subject.titles).to eq([{"title"=>":(unav)"}])
674
755
  expect(subject.dates).to eq([{"date"=>"2018-10", "dateType"=>"Issued"}, {"date"=>"2018-10-03T12:09:12Z", "dateType"=>"Updated"}])
675
756
  expect(subject.publication_year).to eq("2018")
676
757
  expect(subject.publisher).to eq("Baskent University")
data/spec/readers/datacite_reader_spec.rb CHANGED
@@ -295,6 +295,17 @@ describe Bolognese::Metadata, vcr: true do
295
295
  {"subject"=>"FOS: Media and communications", "subjectScheme"=>"Fields of Science and Technology (FOS)", "schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf"}, {"subject"=>"Library and Information Studies"}])
296
296
  end
297
297
 
298
+ it "cc-by 3.0 us" do
299
+ input = "10.6084/m9.figshare.1286826.v1"
300
+ subject = Bolognese::Metadata.new(input: input)
301
+ expect(subject.valid?).to be true
302
+ expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Attribution 3.0 Unported",
303
+ + "rightsIdentifier"=>"cc-by-3.0",
304
+ + "rightsIdentifierScheme"=>"SPDX",
305
+ + "rightsUri"=>"https://creativecommons.org/licenses/by/3.0/legalcode",
306
+ + "schemeUri"=>"https://spdx.org/licenses/"}])
307
+ end
308
+
298
309
  it "funding schema version 3" do
299
310
  input = "https://doi.org/10.5281/ZENODO.1239"
300
311
  subject = Bolognese::Metadata.new(input: input)
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bolognese
3
3
  version: !ruby/object:Gem::Version
4
- version: 1.8.5
4
+ version: 1.8.10
5
5
  platform: ruby
6
6
  authors:
7
7
  - Martin Fenner
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2020-07-30 00:00:00.000000000 Z
11
+ date: 2020-10-11 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: maremma
@@ -130,22 +130,16 @@ dependencies:
130
130
  name: thor
131
131
  requirement: !ruby/object:Gem::Requirement
132
132
  requirements:
133
- - - "~>"
134
- - !ruby/object:Gem::Version
135
- version: '1.0'
136
133
  - - ">="
137
134
  - !ruby/object:Gem::Version
138
- version: 1.0.1
135
+ version: '0.19'
139
136
  type: :runtime
140
137
  prerelease: false
141
138
  version_requirements: !ruby/object:Gem::Requirement
142
139
  requirements:
143
- - - "~>"
144
- - !ruby/object:Gem::Version
145
- version: '1.0'
146
140
  - - ">="
147
141
  - !ruby/object:Gem::Version
148
- version: 1.0.1
142
+ version: '0.19'
149
143
  - !ruby/object:Gem::Dependency
150
144
  name: colorize
151
145
  requirement: !ruby/object:Gem::Requirement
@@ -913,6 +907,7 @@ files:
913
907
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset.yml
914
908
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset_usda.yml
915
909
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/date_in_future.yml
910
+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml
916
911
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/empty_given_name.yml
917
912
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/invalid_date.yml
918
913
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/journal_article.yml
@@ -925,7 +920,9 @@ files:
925
920
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/markup.yml
926
921
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/missing_creator.yml
927
922
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles.yml
923
+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml
928
924
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/not_found_error.yml
925
+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/peer_review.yml
929
926
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/posted_content.yml
930
927
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/posted_content_copernicus.yml
931
928
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/report_osti.yml
@@ -947,6 +944,7 @@ files:
947
944
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_only_full_name.yml
948
945
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_with_scheme.yml
949
946
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_with_wrong_orcid_scheme.yml
947
+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/cc-by_3_0_us.yml
950
948
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/content_url.yml
951
949
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/date.yml
952
950
  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/dissertation.yml