bolognese 1.8.4 → 1.8.9

checksums.yaml

@@ -1,7 +1,7 @@
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-  data.tar.gz: c09a31b4be63e5bc7998a6b506db232010eff1b60c6815b4aae86c186ea0d60b
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+  data.tar.gz: f37fc1533d5be911b87de1e25d19cc9c1cb6bbfaeef18cf05f41b66401a6ed87
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data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    bolognese (1.8.4)
+    bolognese (1.8.9)
       activesupport (>= 4.2.5)
       benchmark_methods (~> 0.7)
       bibtex-ruby (>= 5.1.0)
@@ -25,7 +25,7 @@ PATH
       postrank-uri (~> 1.0, >= 1.0.18)
       rdf-rdfxml (~> 3.1)
       rdf-turtle (~> 3.1)
-      thor (~> 1.0, >= 1.0.1)
+      thor (>= 0.19)
 
 GEM
   remote: https://rubygems.org/
@@ -41,6 +41,7 @@ GEM
     benchmark_methods (0.7)
     bibtex-ruby (5.1.4)
       latex-decode (~> 0.0)
+    bigdecimal (2.0.0)
     builder (3.2.4)
     citeproc (1.0.10)
       namae (~> 1.0)
@@ -48,7 +49,7 @@ GEM
       citeproc (~> 1.0, >= 1.0.9)
       csl (~> 1.5)
     colorize (0.8.1)
-    concurrent-ruby (1.1.6)
+    concurrent-ruby (1.1.7)
     crack (0.4.3)
       safe_yaml (~> 1.0.0)
     crass (1.0.6)
@@ -121,7 +122,8 @@ GEM
     namae (1.0.1)
     nokogiri (1.10.10)
       mini_portile2 (~> 2.4.0)
-    oj (3.10.8)
+    oj (3.10.12)
+      bigdecimal (>= 1.0, < 3)
     oj_mimic_json (1.0.1)
     optimist (3.0.1)
     postrank-uri (1.0.24)
@@ -133,7 +135,7 @@ GEM
     rack-test (0.8.3)
       rack (>= 1.0, < 3)
     rake (12.3.3)
-    rdf (3.1.4)
+    rdf (3.1.5)
       hamster (~> 3.0)
       link_header (~> 0.0, >= 0.0.8)
     rdf-aggregate-repo (3.1.0)
@@ -175,7 +177,7 @@ GEM
       rspec (~> 3)
     safe_yaml (1.0.5)
     scanf (1.0.0)
-    simplecov (0.18.5)
+    simplecov (0.19.0)
       docile (~> 1.1)
       simplecov-html (~> 0.11)
     simplecov-html (0.12.2)

data/bolognese.gemspec

@@ -23,7 +23,7 @@ Gem::Specification.new do |s|
   s.add_dependency 'builder', '~> 3.2', '>= 3.2.2'
   s.add_dependency 'activesupport', '>= 4.2.5'
   s.add_dependency 'bibtex-ruby', '>= 5.1.0'
-  s.add_dependency 'thor', '~> 1.0', '>= 1.0.1'
+  s.add_dependency 'thor', '>= 0.19'
   s.add_dependency 'colorize', '~> 0.8.1'
   s.add_dependency 'namae', '~> 1.0'
   s.add_dependency 'edtf', '~> 3.0', '>= 3.0.4'

data/lib/bolognese/readers/crossref_reader.rb

@@ -31,7 +31,7 @@ module Bolognese
         end
 
         # model should be one of book, conference, database, dissertation, journal, peer_review, posted_content,
-        # report-paper, sa_component, standard
+        # report_paper, sa_component, standard
         model = meta.dig("crossref").to_h.keys.last
 
         resource_type = nil
@@ -82,6 +82,13 @@ module Bolognese
         when "database"
           bibliographic_metadata = meta.dig("crossref", "database", "dataset").to_h
           resource_type = "dataset"
+        when "report_paper"
+          bibliographic_metadata = meta.dig("crossref", "report_paper", "report_paper_metadata").to_h
+          resource_type = "report"
+        when "peer_review"
+          bibliographic_metadata = meta.dig("crossref", "peer_review")
+        when "dissertation"
+          bibliographic_metadata = meta.dig("crossref", "dissertation")
         end
 
         resource_type = (resource_type || model).to_s.underscore.camelcase.presence
@@ -156,7 +163,7 @@ module Bolognese
                     end
 
         id = normalize_doi(options[:doi] || options[:id] || bibliographic_metadata.dig("doi_data", "doi"))
-        identifiers = [crossref_alternate_identifiers(bibliographic_metadata)].compact
+        identifiers = crossref_alternate_identifiers(bibliographic_metadata)
 
         { "id" => id,
           "types" => types,
@@ -187,14 +194,23 @@ module Bolognese
 
       def crossref_alternate_identifiers(bibliographic_metadata)
         if bibliographic_metadata.dig("publisher_item", "item_number").present?
-          { "identifier" => parse_attributes(bibliographic_metadata.dig("publisher_item", "item_number")),
-            "identifierType" => "Publisher ID" }
+          Array.wrap(bibliographic_metadata.dig("publisher_item", "item_number")).map do |item|
+            if item.is_a?(String)
+              { "identifier" => item,
+                "identifierType" => "Publisher ID" }
+            else
+              { "identifier" => item.fetch("__content__", nil),
+                "identifierType" => item.fetch("item_number_type", nil) || "Publisher ID" }
+            end
+          end
         elsif parse_attributes(bibliographic_metadata.fetch("item_number", nil)).present?
-          { "identifier" => parse_attributes(bibliographic_metadata.fetch("item_number", nil)),
-            "identifierType" => "Publisher ID" }
+          [{ "identifier" => parse_attributes(bibliographic_metadata.fetch("item_number", nil)),
+            "identifierType" => "Publisher ID" }]
         elsif parse_attributes(bibliographic_metadata.fetch("isbn", nil)).present?
-          { "identifier" => parse_attributes(bibliographic_metadata.fetch("isbn", nil), first: true),
-            "identifierType" => "ISBN" }
+          [{ "identifier" => parse_attributes(bibliographic_metadata.fetch("isbn", nil), first: true),
+             "identifierType" => "ISBN" }]
+        else
+          []
         end
       end
 
@@ -222,7 +238,7 @@ module Bolognese
       end
 
       def crossref_people(bibliographic_metadata, contributor_role)
-        person = bibliographic_metadata.dig("contributors", "person_name")
+        person = bibliographic_metadata.dig("contributors", "person_name") || bibliographic_metadata.dig("person_name")
         organization = Array.wrap(bibliographic_metadata.dig("contributors", "organization"))
         person = [{ "name" => ":(unav)", "contributor_role"=>"author" }] if contributor_role == "author" && Array.wrap(person).select { |a| a["contributor_role"] == "author" }.blank? && Array.wrap(organization).select { |a| a["contributor_role"] == "author" }.blank?
 

data/lib/bolognese/utils.rb

@@ -7,6 +7,7 @@ module Bolognese
       "https://creativecommons.org/licenses/by/2.0" => "https://creativecommons.org/licenses/by/2.0/legalcode",
       "https://creativecommons.org/licenses/by/2.5" => "https://creativecommons.org/licenses/by/2.5/legalcode",
       "https://creativecommons.org/licenses/by/3.0" => "https://creativecommons.org/licenses/by/3.0/legalcode",
+      "https://creativecommons.org/licenses/by/3.0/us" => "https://creativecommons.org/licenses/by/3.0/legalcode",
       "https://creativecommons.org/licenses/by/4.0" => "https://creativecommons.org/licenses/by/4.0/legalcode",
       "https://creativecommons.org/licenses/by-nc/1.0" => "https://creativecommons.org/licenses/by-nc/1.0/legalcode",
       "https://creativecommons.org/licenses/by-nc/2.0" => "https://creativecommons.org/licenses/by-nc/2.0/legalcode",
@@ -117,7 +118,7 @@ module Bolognese
       "EditedBook" => "Book",
       "JournalArticle" => "ScholarlyArticle",
       "Journal" => nil,
-      "Report" => nil,
+      "Report" => "Report",
       "BookSeries" => nil,
       "ReportSeries" => nil,
       "BookTrack" => nil,
@@ -132,7 +133,8 @@ module Bolognese
       "ReferenceEntry" => nil,
       "JournalVolume" => "PublicationVolume",
       "BookSet" => nil,
-      "PostedContent" => "ScholarlyArticle"
+      "PostedContent" => "ScholarlyArticle",
+      "PeerReview" => "Review"
     }
 
     CR_TO_BIB_TRANSLATIONS = {
@@ -146,7 +148,7 @@ module Bolognese
       "EditedBook" => "book",
       "JournalArticle" => "article",
       "Journal" => nil,
-      "Report" => nil,
+      "Report" => "techreport",
       "BookSeries" => nil,
       "ReportSeries" => nil,
       "BookTrack" => nil,
@@ -214,9 +216,11 @@ module Bolognese
       "ImageObject" => "Image",
       "Movie" => "Audiovisual",
       "PublicationIssue" => "Text",
+      "Report" => "Text",
       "ScholarlyArticle" => "Text",
       "Thesis" => "Text",
       "Service" => "Service",
+      "Review" => "Text",
       "SoftwareSourceCode" => "Software",
       "VideoObject" => "Audiovisual",
       "WebPage" => "Text",
@@ -258,6 +262,7 @@ module Bolognese
       "ImageObject" => "graphic",
       "Movie" => "motion_picture",
       "PublicationIssue" => nil,
+      "Report" => "report",
       "ScholarlyArticle" => "article-journal",
       "Service" => nil,
       "Thesis" => "thesis",
@@ -278,6 +283,7 @@ module Bolognese
       "Event" => nil,
       "ImageObject" => "FIGURE",
       "Movie" => "MPCT",
+      "Report" => "RPRT",
       "PublicationIssue" => nil,
       "ScholarlyArticle" => "JOUR",
       "Service" => nil,
@@ -298,11 +304,11 @@ module Bolognese
       "EditedBook" => "BOOK",
       "JournalArticle" => "JOUR",
       "Journal" => nil,
-      "Report" => nil,
+      "Report" => "RPRT",
       "BookSeries" => nil,
       "ReportSeries" => nil,
       "BookTrack" => nil,
-      "Standard" => nil,
+      "Standard" => "STAND",
       "BookSection" => "CHAP",
       "BookPart" => "CHAP",
       "Book" => "BOOK",

data/lib/bolognese/version.rb

@@ -1,3 +1,3 @@
 module Bolognese
-  VERSION = "1.8.4"
+  VERSION = "1.8.9"
 end

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml

@@ -0,0 +1,122 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://doi.org/ra/10.14264
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+  response:
+    status:
+      code: 200
+      message: ''
+    headers:
+      Date:
+      - Sat, 22 Aug 2020 09:37:48 GMT
+      Content-Type:
+      - application/json;charset=UTF-8
+      Connection:
+      - keep-alive
+      Set-Cookie:
+      - __cfduid=dd2a5efda710f4da2c27722ecdb7d162d1598089068; expires=Mon, 21-Sep-20
+        09:37:48 GMT; path=/; domain=.doi.org; HttpOnly; SameSite=Lax; Secure
+      Cf-Cache-Status:
+      - DYNAMIC
+      Cf-Request-Id:
+      - 04b72118d7000064a35e821200000001
+      Expect-Ct:
+      - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
+      Strict-Transport-Security:
+      - max-age=31536000; includeSubDomains; preload
+      Server:
+      - cloudflare
+      Cf-Ray:
+      - 5c6b9e07ba4164a3-FRA
+    body:
+      encoding: ASCII-8BIT
+      string: |-
+        [
+          {
+            "DOI": "10.14264",
+            "RA": "Crossref"
+          }
+        ]
+    http_version:
+  recorded_at: Sat, 22 Aug 2020 09:37:48 GMT
+- request:
+    method: get
+    uri: https://api.crossref.org/works/10.14264/uql.2020.791/transform/application/vnd.crossref.unixsd+xml
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
+      Accept:
+      - text/xml
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Link:
+      - <http://dx.doi.org/10.14264/uql.2020.791>; rel="canonical", <http://orcid.org/0000-0003-3086-4443>;
+        title="Patricia Maree Collingwood"; rel="author"
+      Access-Control-Allow-Origin:
+      - "*"
+      Access-Control-Allow-Headers:
+      - X-Requested-With
+      Content-Length:
+      - '2769'
+      Server:
+      - http-kit
+      Date:
+      - Sat, 22 Aug 2020 09:37:49 GMT
+      X-Rate-Limit-Limit:
+      - '50'
+      X-Rate-Limit-Interval:
+      - 1s
+      Connection:
+      - close
+    body:
+      encoding: ASCII-8BIT
+      string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<crossref_result xmlns=\"http://www.crossref.org/qrschema/3.0\"
+        version=\"3.0\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://www.crossref.org/qrschema/3.0
+        http://www.crossref.org/schemas/crossref_query_output3.0.xsd\">\r\n  <query_result>\r\n
+        \   <head>\r\n      <doi_batch_id>none</doi_batch_id>\r\n    </head>\r\n    <body>\r\n
+        \     <query status=\"resolved\">\r\n        <doi type=\"dissertation\">10.14264/uql.2020.791</doi>\r\n
+        \       <crm-item name=\"publisher-name\" type=\"string\">University of Queensland
+        Library</crm-item>\r\n        <crm-item name=\"prefix-name\" type=\"string\">University
+        of Queensland Library</crm-item>\r\n        <crm-item name=\"member-id\" type=\"number\">5387</crm-item>\r\n
+        \       <crm-item name=\"citation-id\" type=\"number\">116937436</crm-item>\r\n
+        \       <crm-item name=\"book-id\" type=\"number\">1346666</crm-item>\r\n
+        \       <crm-item name=\"deposit-timestamp\" type=\"number\">1591592933</crm-item>\r\n
+        \       <crm-item name=\"owner-prefix\" type=\"string\">10.14264</crm-item>\r\n
+        \       <crm-item name=\"last-update\" type=\"date\">2020-06-08T05:08:59Z</crm-item>\r\n
+        \       <crm-item name=\"created\" type=\"date\">2020-06-08T05:08:58Z</crm-item>\r\n
+        \       <crm-item name=\"citedby-count\" type=\"number\">0</crm-item>\r\n
+        \       <doi_record>\r\n          <crossref xmlns=\"http://www.crossref.org/xschema/1.1\"
+        xsi:schemaLocation=\"http://www.crossref.org/xschema/1.1 http://doi.crossref.org/schemas/unixref1.1.xsd\">\r\n
+        \           <dissertation>\r\n              <person_name sequence=\"first\"
+        contributor_role=\"author\">\r\n                <given_name>Patricia Maree</given_name>\r\n
+        \               <surname>Collingwood</surname>\r\n                <ORCID authenticated=\"true\">https://orcid.org/0000-0003-3086-4443</ORCID>\r\n
+        \             </person_name>\r\n              <titles>\r\n                <title>School
+        truancy and financial independence during emerging adulthood: a longitudinal
+        analysis of receipt of and reliance on cash transfers</title>\r\n              </titles>\r\n
+        \             <approval_date>\r\n                <month>05</month>\r\n                <day>25</day>\r\n
+        \               <year>2020</year>\r\n              </approval_date>\r\n              <institution>\r\n
+        \               <institution_name>The University of Queensland</institution_name>\r\n
+        \               <institution_department>School of Social Science</institution_department>\r\n
+        \             </institution>\r\n              <degree>PhD Thesis</degree>\r\n
+        \             <doi_data>\r\n                <doi>10.14264/uql.2020.791</doi>\r\n
+        \               <resource>http://espace.library.uq.edu.au/view/UQ:23a1e74</resource>\r\n
+        \             </doi_data>\r\n            </dissertation>\r\n          </crossref>\r\n
+        \       </doi_record>\r\n      </query>\r\n    </body>\r\n  </query_result>\r\n</crossref_result>"
+    http_version:
+  recorded_at: Sat, 22 Aug 2020 09:37:49 GMT
+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/peer_review.yml

@@ -0,0 +1,96 @@
+---
+http_interactions:
+- request:
+    method: get
+    uri: https://doi.org/ra/10.7554
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+  response:
+    status:
+      code: 200
+      message: ''
+    headers:
+      Date:
+      - Sat, 22 Aug 2020 09:09:10 GMT
+      Content-Type:
+      - application/json;charset=UTF-8
+      Connection:
+      - keep-alive
+      Set-Cookie:
+      - __cfduid=dc7cd5dde23bd772408198c155ba5278f1598087350; expires=Mon, 21-Sep-20
+        09:09:10 GMT; path=/; domain=.doi.org; HttpOnly; SameSite=Lax; Secure
+      Cf-Cache-Status:
+      - DYNAMIC
+      Cf-Request-Id:
+      - 04b706e111000097cca18f6200000001
+      Expect-Ct:
+      - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
+      Strict-Transport-Security:
+      - max-age=31536000; includeSubDomains; preload
+      Server:
+      - cloudflare
+      Cf-Ray:
+      - 5c6b7414eaca97cc-FRA
+    body:
+      encoding: ASCII-8BIT
+      string: |-
+        [
+          {
+            "DOI": "10.7554",
+            "RA": "Crossref"
+          }
+        ]
+    http_version:
+  recorded_at: Sat, 22 Aug 2020 09:09:10 GMT
+- request:
+    method: get
+    uri: https://api.crossref.org/works/10.7554/elife.55167.sa2/transform/application/vnd.crossref.unixsd+xml
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
+      Accept:
+      - text/xml
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Link:
+      - <http://dx.doi.org/10.7554/elife.55167.sa2>; rel="canonical", <http://creativecommons.org/licenses/by/4.0/>;
+        rel="license", <http://orcid.org/0000-0002-5286-4375>; title="Jeremy Magland";
+        rel="author", <http://orcid.org/0000-0002-2642-603X>; title="Elizabeth Lovero";
+        rel="author", <http://orcid.org/0000-0002-4997-4063>; title="Alexander J Morley";
+        rel="author", <http://orcid.org/0000-0002-2023-1653>; title="Cole Lincoln
+        Hurwitz"; rel="author"
+      Access-Control-Allow-Origin:
+      - "*"
+      Access-Control-Allow-Headers:
+      - X-Requested-With
+      Content-Length:
+      - '5929'
+      Server:
+      - http-kit
+      Date:
+      - Sat, 22 Aug 2020 09:09:11 GMT
+      X-Rate-Limit-Limit:
+      - '50'
+      X-Rate-Limit-Interval:
+      - 1s
+      Connection:
+      - close
+    body:
+      encoding: ASCII-8BIT
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data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/report_osti.yml

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+      string: ''
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+        http://www.crossref.org/schemas/crossref_query_output3.0.xsd\">\r\n  <query_result>\r\n
+        \   <head>\r\n      <doi_batch_id>none</doi_batch_id>\r\n    </head>\r\n    <body>\r\n
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+        \       <crm-item name=\"publisher-name\" type=\"string\">Office of Scientific
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+        type=\"string\">Office of Scientific and Technical Information</crm-item>\r\n
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+        type=\"date\">2010-02-19T03:56:03Z</crm-item>\r\n        <crm-item name=\"citedby-count\"
+        type=\"number\">159</crm-item>\r\n        <doi_record>\r\n          <crossref
+        xmlns=\"http://www.crossref.org/xschema/1.0\" xsi:schemaLocation=\"http://www.crossref.org/xschema/1.0
+        http://doi.crossref.org/schemas/unixref1.0.xsd\">\r\n            <report-paper
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+        \                 <person_name sequence=\"additional\" contributor_role=\"author\">\r\n
+        \                   <given_name>E.</given_name>\r\n                    <surname>Ela</surname>\r\n
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+        \               </institution>\r\n                <publisher_item>\r\n                  <item_number
+        item_number_type=\"report-number\">NREL/TP-6A2-47187</item_number>\r\n                  <item_number
+        item_number_type=\"sequence-number\">972169</item_number>\r\n                </publisher_item>\r\n
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+        \           </report-paper>\r\n          </crossref>\r\n        </doi_record>\r\n
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+    http_version:
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+recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/cc-by_3_0_us.yml

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+---
+http_interactions:
+- request:
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+    body:
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+      string: ''
+    headers:
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+      - application/json;charset=UTF-8
+      Connection:
+      - keep-alive
+      Set-Cookie:
+      - __cfduid=dfd6c87cff8b6f860fa122f6cddf80f0f1598010184; expires=Sun, 20-Sep-20
+        11:43:04 GMT; path=/; domain=.doi.org; HttpOnly; SameSite=Lax; Secure
+      Cf-Cache-Status:
+      - DYNAMIC
+      Cf-Request-Id:
+      - 04b26d6b940000d6e96a26c200000001
+      Expect-Ct:
+      - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
+      Strict-Transport-Security:
+      - max-age=31536000; includeSubDomains; preload
+      Server:
+      - cloudflare
+      Cf-Ray:
+      - 5c641825bf84d6e9-FRA
+    body:
+      encoding: ASCII-8BIT
+      string: |-
+        [
+          {
+            "DOI": "10.6084",
+            "RA": "DataCite"
+          }
+        ]
+    http_version:
+  recorded_at: Fri, 21 Aug 2020 11:43:04 GMT
+- request:
+    method: get
+    uri: https://api.datacite.org/dois/10.6084/m9.figshare.1286826.v1?include=media,client
+    body:
+      encoding: US-ASCII
+      string: ''
+    headers:
+      User-Agent:
+      - Mozilla/5.0 (compatible; Maremma/4.7.1; mailto:info@datacite.org)
+      Accept:
+      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
+  response:
+    status:
+      code: 200
+      message: OK
+    headers:
+      Date:
+      - Fri, 21 Aug 2020 11:43:05 GMT
+      Content-Type:
+      - application/json; charset=utf-8
+      Connection:
+      - keep-alive
+      Status:
+      - 200 OK
+      X-Anonymous-Consumer:
+      - 'true'
+      Cache-Control:
+      - max-age=0, private, must-revalidate
+      Vary:
+      - Accept-Encoding, Origin
+      X-Request-Id:
+      - f32dc0c7-ae28-4225-aebb-690f7ed8f96f
+      Etag:
+      - W/"1053de58f4bcf558a2c6eff57d658893"
+      X-Runtime:
+      - '0.281050'
+      X-Powered-By:
+      - Phusion Passenger 6.0.6
+      Server:
+      - nginx/1.14.0 + Phusion Passenger 6.0.6
+    body:
+      encoding: ASCII-8BIT
+      string: '{"data":{"id":"10.6084/m9.figshare.1286826.v1","type":"dois","attributes":{"doi":"10.6084/m9.figshare.1286826.v1","prefix":"10.6084","suffix":"m9.figshare.1286826.v1","identifiers":[],"alternateIdentifiers":[],"creators":[{"name":"Kramer,
+        Bianca","nameType":"Personal","givenName":"Bianca","familyName":"Kramer","affiliation":[],"nameIdentifiers":[{"nameIdentifier":"https://orcid.org/0000-0002-5965-6560","nameIdentifierScheme":"ORCID"}]},{"name":"Bosman,
+        Jeroen","nameType":"Personal","givenName":"Jeroen","familyName":"Bosman","affiliation":[],"nameIdentifiers":[{"nameIdentifier":"https://orcid.org/0000-0001-5796-2727","nameIdentifierScheme":"ORCID"}]}],"titles":[{"title":"101
+        Innovations in Scholarly Communication - the Changing Research Workflow"}],"publisher":"Figshare","container":{},"publicationYear":2015,"subjects":[],"contributors":[],"dates":[{"date":"2015","dateType":"Issued"}],"language":null,"types":{"ris":"DATA","bibtex":"misc","citeproc":"dataset","schemaOrg":"Dataset","resourceType":"Dataset","resourceTypeGeneral":"Dataset"},"relatedIdentifiers":[],"sizes":[],"formats":[],"version":null,"rightsList":[{"rights":"CC-BY","rightsUri":"http://creativecommons.org/licenses/by/3.0/us"}],"descriptions":[],"geoLocations":[],"fundingReferences":[],"xml":"PD94bWwgdmVyc2lvbj0iMS4wIiBlbmNvZGluZz0iVVRGLTgiPz4KPHJlc291cmNlIHhtbG5zPSJodHRwOi8vZGF0YWNpdGUub3JnL3NjaGVtYS9rZXJuZWwtMyIgeG1sbnM6eHNpPSJodHRwOi8vd3d3LnczLm9yZy8yMDAxL1hNTFNjaGVtYS1pbnN0YW5jZSIgeHNpOnNjaGVtYUxvY2F0aW9uPSJodHRwOi8vZGF0YWNpdGUub3JnL3NjaGVtYS9rZXJuZWwtMyBodHRwOi8vc2NoZW1hLmRhdGFjaXRlLm9yZy9tZXRhL2tlcm5lbC0zL21ldGFkYXRhLnhzZCI+PGlkZW50aWZpZXIgaWRlbnRpZmllclR5cGU9IkRPSSI+MTAuNjA4NC9NOS5GSUdTSEFSRS4xMjg2ODI2LlYxPC9pZGVudGlmaWVyPjx0aXRsZXM+PHRpdGxlPjEwMSBJbm5vdmF0aW9ucyBpbiBTY2hvbGFybHkgQ29tbXVuaWNhdGlvbiAtIHRoZSBDaGFuZ2luZyBSZXNlYXJjaCBXb3JrZmxvdzwvdGl0bGU+PC90aXRsZXM+PHB1Ymxpc2hlcj5GaWdzaGFyZTwvcHVibGlzaGVyPjxwdWJsaWNhdGlvblllYXI+MjAxNTwvcHVibGljYXRpb25ZZWFyPjxyZXNvdXJjZVR5cGUgcmVzb3VyY2VUeXBlR2VuZXJhbD0iRGF0YXNldCI+RGF0YXNldDwvcmVzb3VyY2VUeXBlPjxyaWdodHNMaXN0PjxyaWdodHMgcmlnaHRzVVJJPSJodHRwOi8vY3JlYXRpdmVjb21tb25zLm9yZy9saWNlbnNlcy9ieS8zLjAvdXMvIj5DQy1CWTwvcmlnaHRzPjwvcmlnaHRzTGlzdD48Y3JlYXRvcnM+PGNyZWF0b3I+PGNyZWF0b3JOYW1lPkJpYW5jYSAgS3JhbWVyPC9jcmVhdG9yTmFtZT48bmFtZUlkZW50aWZpZXIgbmFtZUlkZW50aWZpZXJTY2hlbWU9Ik9SQ0lEIj4wMDAwLTAwMDItNTk2NS02NTYwPC9uYW1lSWRlbnRpZmllcj48L2NyZWF0b3I+PGNyZWF0b3I+PGNyZWF0b3JOYW1lPkplcm9lbiBCb3NtYW48L2NyZWF0b3JOYW1lPjxuYW1lSWRlbnRpZmllciBuYW1lSWRlbnRpZmllclNjaGVtZT0iT1JDSUQiPjAwMDAtMDAwMS01Nzk2LTI3Mjc8L25hbWVJZGVudGlmaWVyPjwvY3JlYXRvcj48L2NyZWF0b3JzPjwvcmVzb3VyY2U+","url":"https://figshare.com/articles/101_Innovations_in_Scholarly_Communication_the_Changing_Research_Workflow/1286826/1","contentUrl":null,"metadataVersion":0,"schemaVersion":"http://datacite.org/schema/kernel-3","source":null,"isActive":true,"state":"findable","reason":null,"viewCount":0,"viewsOverTime":[],"downloadCount":0,"downloadsOverTime":[],"referenceCount":0,"citationCount":0,"citationsOverTime":[],"partCount":0,"partOfCount":0,"versionCount":0,"versionOfCount":0,"created":"2016-01-19T13:15:11.000Z","registered":"2016-01-19T13:15:12.000Z","published":"2015","updated":"2020-07-27T15:52:33.000Z"},"relationships":{"client":{"data":{"id":"figshare.ars","type":"clients"}},"media":{"data":{"id":"10.6084/m9.figshare.1286826.v1","type":"media"}},"references":{"data":[]},"citations":{"data":[]},"parts":{"data":[]},"partOf":{"data":[]},"versions":{"data":[]},"versionOf":{"data":[]}}},"included":[{"id":"figshare.ars","type":"clients","attributes":{"name":"figshare
+        Academic Research System","symbol":"FIGSHARE.ARS","year":2016,"contactEmail":"danielduduta@figshare.com","alternateName":null,"description":"figshare
+        allows researchers to publish all of their research outputs in an easily citable,
+        sharable and discoverable manner. All file formats can be published, including
+        videos and datasets. Optional peer review process. figshare uses creative
+        commons licensing.","language":null,"clientType":"repository","domains":"figshare.com","re3data":"https://doi.org/10.17616/R3PK5R","opendoar":null,"issn":null,"url":"http://figshare.com/","created":"2016-10-12T13:42:35.000Z","updated":"2019-07-27T07:15:48.000Z","isActive":true,"hasPassword":true},"relationships":{"provider":{"data":{"id":"figshare","type":"providers"}},"prefixes":{"data":[{"id":"10.6084","type":"prefixes"}]}}}]}'
+    http_version:
+  recorded_at: Fri, 21 Aug 2020 11:43:05 GMT
+recorded_with: VCR 3.0.3

data/spec/readers/crossref_reader_spec.rb

@@ -19,7 +19,7 @@ describe Bolognese::Metadata, vcr: true do
     it "DOI with data citation" do
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
-      expect(subject.identifiers).to eq([{"identifier"=>"e01567", "identifierType"=>"Publisher ID"}])
+      expect(subject.identifiers).to eq([{"identifier"=>"e01567", "identifierType"=>"article_number"}])
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.url).to eq("https://elifesciences.org/articles/01567")
       expect(subject.creators.length).to eq(5)
@@ -82,7 +82,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.3389/fpls.2019.00816")
-      expect(subject.identifiers).to eq([{"identifier"=>"816", "identifierType"=>"Publisher ID"}])
+      expect(subject.identifiers).to eq([{"identifier"=>"816", "identifierType"=>"article_number"}])
       expect(subject.url).to eq("https://www.frontiersin.org/article/10.3389/fpls.2019.00816/full")
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.creators.length).to eq(4)
@@ -179,6 +179,52 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.agency).to eq("crossref")
     end
 
+    it "peer review" do
+      input = "https://doi.org/10.7554/elife.55167.sa2"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.url).to eq("https://elifesciences.org/articles/55167#sa2")
+      expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"article-journal", "resourceType"=>"PeerReview", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"Review")
+      expect(subject.creators.count).to eq(8)
+      expect(subject.creators.last).to eq("affiliation" => [{"name"=>"Center for Computational Mathematics, Flatiron Institute, New York, United States"}],
+        "familyName" => "Barnett",
+        "givenName" => "Alex H",
+        "name" => "Barnett, Alex H",
+        "nameType" => "Personal")
+      expect(subject.titles).to eq([{"title"=>"Author response: SpikeForest, reproducible web-facing ground-truth validation of automated neural spike sorters"}])
+      expect(subject.id).to eq("https://doi.org/10.7554/elife.55167.sa2")
+      expect(subject.identifiers).to be_empty
+      expect(subject.descriptions).to be_empty
+      expect(subject.dates).to include({"date"=>"2020-05-19", "dateType"=>"Issued"})
+      expect(subject.publication_year).to eq("2020")
+      expect(subject.publisher).to eq("eLife Sciences Publications, Ltd")
+      expect(subject.agency).to eq("crossref")
+    end
+
+    it "dissertation" do
+      input = "https://doi.org/10.14264/uql.2020.791"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.url).to eq("http://espace.library.uq.edu.au/view/UQ:23a1e74")
+      expect(subject.types).to eq("bibtex"=>"phdthesis", "citeproc"=>"thesis", "resourceType"=>"Dissertation", "resourceTypeGeneral"=>"Text", "ris"=>"THES", "schemaOrg"=>"Thesis")
+      expect(subject.creators).to eq([{"familyName"=>"Collingwood",
+        "givenName"=>"Patricia Maree",
+        "name"=>"Collingwood, Patricia Maree",
+        "nameIdentifiers"=>
+          [{"nameIdentifier"=>"https://orcid.org/0000-0003-3086-4443",
+            "nameIdentifierScheme"=>"ORCID",
+           "schemeUri"=>"https://orcid.org"}],
+           "nameType"=>"Personal"}])
+      expect(subject.titles).to eq([{"title"=>"School truancy and financial independence during emerging adulthood: a longitudinal analysis of receipt of and reliance on cash transfers"}])
+      expect(subject.id).to eq("https://doi.org/10.14264/uql.2020.791")
+      expect(subject.identifiers).to be_empty
+      expect(subject.descriptions).to be_empty
+      expect(subject.dates).to include({"date"=>"2020-06-08", "dateType"=>"Issued"})
+      expect(subject.publication_year).to eq("2020")
+      expect(subject.publisher).to eq("University of Queensland Library")
+      expect(subject.agency).to eq("crossref")
+    end
+
     it "DOI with SICI DOI" do
       input = "https://doi.org/10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
       subject = Bolognese::Metadata.new(input: input)
@@ -229,7 +275,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.1016/j.ejphar.2015.03.018")
-      expect(subject.identifiers).to eq([{"identifier"=>"S0014299915002332", "identifierType"=>"Publisher ID"}])
+      expect(subject.identifiers).to eq([{"identifier"=>"S0014299915002332", "identifierType"=>"sequence-number"}])
       expect(subject.url).to eq("https://linkinghub.elsevier.com/retrieve/pii/S0014299915002332")
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.creators.length).to eq(10)
@@ -433,7 +479,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.3280/ecag2018-001005")
-      expect(subject.identifiers).to eq([{"identifier"=>"5", "identifierType"=>"Publisher ID"}])
+      expect(subject.identifiers).to eq([{"identifier"=>"5", "identifierType"=>"article_number"}])
       expect(subject.url).to eq("http://www.francoangeli.it/riviste/Scheda_Riviste.asp?IDArticolo=61645")
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.creators.length).to eq(2)
@@ -547,7 +593,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.1055/s-0039-1690894")
-      expect(subject.identifiers).to eq([{"identifier"=>"s-0039-1690894", "identifierType"=>"Publisher ID"}])
+      expect(subject.identifiers).to eq([{"identifier"=>"s-0039-1690894", "identifierType"=>"sequence-number"}])
       expect(subject.url).to eq("http://www.thieme-connect.de/DOI/DOI?10.1055/s-0039-1690894")
       expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"JournalArticle", "resourceTypeGeneral"=>"Text", "ris"=>"JOUR", "schemaOrg"=>"ScholarlyArticle")
       expect(subject.creators.length).to eq(4)
@@ -643,6 +689,25 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.agency).to eq("crossref")
     end
 
+    it "report osti" do
+      input = "10.2172/972169"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.url).to eq("http://www.osti.gov/servlets/purl/972169-1QXROM/")
+      expect(subject.types).to eq("bibtex"=>"techreport", "citeproc"=>"report", "resourceType"=>"Report", "resourceTypeGeneral"=>"Text", "ris"=>"RPRT", "schemaOrg"=>"Report")
+      expect(subject.creators.count).to eq(4)
+      expect(subject.creators.first).to eq("familyName"=>"Denholm", "givenName"=>"P.", "name"=>"Denholm, P.", "nameType"=>"Personal")
+      expect(subject.contributors.count).to eq(0)
+      expect(subject.titles).to eq([{"title"=>"Role of Energy Storage with Renewable Electricity Generation"}])
+      expect(subject.id).to eq("https://doi.org/10.2172/972169")
+      expect(subject.identifiers).to eq( [{"identifier"=>"NREL/TP-6A2-47187", "identifierType"=>"report-number"}, {"identifier"=>"972169", "identifierType"=>"sequence-number"}])
+      expect(subject.descriptions).to be_empty
+      expect(subject.dates).to include({"date"=>"2010-01-01", "dateType"=>"Issued"})
+      expect(subject.publication_year).to eq("2010")
+      expect(subject.publisher).to eq("Office of Scientific and Technical Information  (OSTI)")
+      expect(subject.agency).to eq("crossref")
+    end
+
     it "journal issue" do
       input = "https://doi.org/10.6002/ect.2015.0371"
       subject = Bolognese::Metadata.new(input: input)

data/spec/readers/datacite_reader_spec.rb

@@ -295,6 +295,17 @@ describe Bolognese::Metadata, vcr: true do
         {"subject"=>"FOS: Media and communications", "subjectScheme"=>"Fields of Science and Technology (FOS)", "schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf"}, {"subject"=>"Library and Information Studies"}])
     end
 
+    it "cc-by 3.0 us" do
+      input = "10.6084/m9.figshare.1286826.v1"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Attribution 3.0 Unported",
+        +  "rightsIdentifier"=>"cc-by-3.0",
+        +  "rightsIdentifierScheme"=>"SPDX",
+        +  "rightsUri"=>"https://creativecommons.org/licenses/by/3.0/legalcode",
+        +  "schemeUri"=>"https://spdx.org/licenses/"}])
+    end
+
     it "funding schema version 3" do
       input = "https://doi.org/10.5281/ZENODO.1239"
       subject = Bolognese::Metadata.new(input: input)

data/spec/writers/datacite_writer_spec.rb

@@ -386,11 +386,11 @@ describe Bolognese::Metadata, vcr: true do
       input = "10.7554/eLife.01567"
       subject = Bolognese::Metadata.new(input: input, from: "crossref")
       expect(subject.valid?).to be true
-      expect(subject.identifiers).to eq( [{"identifier"=>"e01567", "identifierType"=>"Publisher ID"}])
-      subject.identifiers = [{ "identifierType" => "Publisher ID", "identifier" => "abc" }]
+      expect(subject.identifiers).to eq([{"identifier"=>"e01567", "identifierType"=>"article_number"}])
+      subject.identifiers = [{ "identifierType" => "article_number", "identifier" => "abc" }]
       datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
       expect(datacite.dig("identifier", "__content__")).to eq("10.7554/elife.01567")
-      expect(subject.identifiers).to eq([{"identifier"=>"abc", "identifierType"=>"Publisher ID"}])
+      expect(subject.identifiers).to eq([{"identifier"=>"abc", "identifierType"=>"article_number"}])
     end
 
     it "validates against schema" do

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bolognese
 version: !ruby/object:Gem::Version
-  version: 1.8.4
+  version: 1.8.9
 platform: ruby
 authors:
 - Martin Fenner
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-07-29 00:00:00.000000000 Z
+date: 2020-08-22 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: maremma
@@ -130,22 +130,16 @@ dependencies:
   name: thor
   requirement: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '1.0'
     - - ">="
       - !ruby/object:Gem::Version
-        version: 1.0.1
+        version: '0.19'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
-    - - "~>"
-      - !ruby/object:Gem::Version
-        version: '1.0'
     - - ">="
       - !ruby/object:Gem::Version
-        version: 1.0.1
+        version: '0.19'
 - !ruby/object:Gem::Dependency
   name: colorize
   requirement: !ruby/object:Gem::Requirement
@@ -913,6 +907,7 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset_usda.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/date_in_future.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dissertation.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/empty_given_name.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/invalid_date.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/journal_article.yml
@@ -926,8 +921,10 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/missing_creator.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/not_found_error.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/peer_review.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/posted_content.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/posted_content_copernicus.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/report_osti.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/vor_with_url.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/yet_another_book.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/yet_another_book_chapter.yml
@@ -946,6 +943,7 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_only_full_name.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_with_scheme.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_with_wrong_orcid_scheme.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/cc-by_3_0_us.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/content_url.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/date.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/dissertation.yml