bolognese 1.8.10 → 1.9

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Files changed (67) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/build.yml +37 -0
  3. data/.github/workflows/changelog.yml +36 -0
  4. data/.github/workflows/release.yml +47 -0
  5. data/CHANGELOG.md +1708 -0
  6. data/Gemfile.lock +63 -59
  7. data/README.md +1 -1
  8. data/bolognese.gemspec +1 -1
  9. data/lib/bolognese/author_utils.rb +6 -5
  10. data/lib/bolognese/datacite_utils.rb +69 -3
  11. data/lib/bolognese/metadata.rb +10 -5
  12. data/lib/bolognese/metadata_utils.rb +3 -2
  13. data/lib/bolognese/readers/bibtex_reader.rb +5 -4
  14. data/lib/bolognese/readers/citeproc_reader.rb +1 -1
  15. data/lib/bolognese/readers/crossref_reader.rb +18 -6
  16. data/lib/bolognese/readers/datacite_reader.rb +57 -11
  17. data/lib/bolognese/readers/ris_reader.rb +3 -3
  18. data/lib/bolognese/utils.rb +163 -46
  19. data/lib/bolognese/version.rb +1 -1
  20. data/lib/bolognese/writers/bibtex_writer.rb +1 -1
  21. data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
  22. data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
  23. data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
  24. data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  25. data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
  26. data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
  27. data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  28. data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
  29. data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
  30. data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
  31. data/resources/kernel-4.4/include/xml.xsd +286 -0
  32. data/resources/kernel-4.4/metadata.xsd +707 -0
  33. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +21 -21
  34. data/resources/kernel-4/include/datacite-dateType-v4.xsd +11 -11
  35. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +6 -6
  36. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +5 -5
  37. data/resources/kernel-4/include/datacite-nameType-v4.xsd +2 -2
  38. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  39. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +19 -19
  40. data/resources/kernel-4/include/datacite-relationType-v4.xsd +36 -34
  41. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +32 -17
  42. data/resources/kernel-4/include/datacite-titleType-v4.xsd +4 -4
  43. data/resources/kernel-4/metadata.xsd +297 -105
  44. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +56 -0
  45. data/spec/fixtures/datacite-example-full-v4.4.xml +114 -0
  46. data/spec/fixtures/datacite-example-relateditems.xml +61 -0
  47. data/spec/fixtures/datacite-example-xs-string.xml +28 -0
  48. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +56 -0
  49. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml +100 -0
  50. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/article_id_as_page_number.yml +100 -0
  51. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_issn.yml +98 -0
  52. data/spec/metadata_spec.rb +1 -1
  53. data/spec/readers/bibtex_reader_spec.rb +2 -2
  54. data/spec/readers/crossref_reader_spec.rb +89 -36
  55. data/spec/readers/datacite_json_reader_spec.rb +1 -1
  56. data/spec/readers/datacite_reader_spec.rb +255 -4
  57. data/spec/readers/ris_reader_spec.rb +3 -3
  58. data/spec/writers/bibtex_writer_spec.rb +1 -1
  59. data/spec/writers/citation_writer_spec.rb +2 -2
  60. data/spec/writers/crosscite_writer_spec.rb +3 -3
  61. data/spec/writers/csv_writer_spec.rb +4 -4
  62. data/spec/writers/datacite_json_writer_spec.rb +3 -3
  63. data/spec/writers/datacite_writer_spec.rb +5 -5
  64. data/spec/writers/ris_writer_spec.rb +3 -2
  65. data/spec/writers/schema_org_writer_spec.rb +4 -4
  66. metadata +32 -8
  67. data/.travis.yml +0 -35
@@ -19,8 +19,9 @@ describe Bolognese::Metadata, vcr: true do
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  expect(ris[11]).to eq("PY - 2014")
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  expect(ris[12]).to eq("PB - eLife Sciences Publications, Ltd")
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  expect(ris[13]).to eq("VL - 3")
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- expect(ris[14]).to eq("SN - 2050-084X")
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- expect(ris[15]).to eq("ER - ")
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+ expect(ris[14]).to eq("SP - e01567")
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+ expect(ris[15]).to eq("SN - 2050-084X")
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+ expect(ris[16]).to eq("ER - ")
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  end
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  it "with pages" do
@@ -11,7 +11,7 @@ describe Bolognese::Metadata, vcr: true do
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  expect(json["@id"]).to eq("https://doi.org/10.7554/elife.01567")
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  expect(json["@type"]).to eq("ScholarlyArticle")
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  expect(json["isPartOf"]).to eq("@type"=>"Periodical", "issn"=>"2050-084X")
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- expect(json["periodical"]).to eq("@type"=>"Journal", "identifier"=>"2050-084X", "identifierType"=>"ISSN", "name"=>"eLife", "volume"=>"3")
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+ expect(json["periodical"]).to eq("@type"=>"Journal", "firstPage" => "e01567", "identifier"=>"2050-084X", "identifierType"=>"ISSN", "name"=>"eLife", "volume"=>"3")
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  expect(json["citation"].length).to eq(26)
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  expect(json["citation"].first).to eq("@id"=>"https://doi.org/10.1038/nature02100", "@type"=>"CreativeWork")
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  expect(json["funder"]).to eq([{"name"=>"SystemsX", "@type"=>"Organization"},
@@ -145,7 +145,7 @@ describe Bolognese::Metadata, vcr: true do
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  it "author is organization" do
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  input = fixture_path + 'gtex.xml'
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  url = "https://ors.datacite.org/doi:/10.25491/9hx8-ke93"
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- content_url = "https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz"
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+ content_url = "https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz"
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  subject = Bolognese::Metadata.new(input: input, url: url, content_url: content_url, from: "datacite")
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  json = JSON.parse(subject.schema_org)
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  expect(json["@id"]).to eq("https://doi.org/10.25491/9hx8-ke93")
@@ -281,8 +281,8 @@ describe Bolognese::Metadata, vcr: true do
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  expect(json["name"]).to eq("Meteo measurements at the Sand Motor")
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  expect(json["author"]).to eq("@type"=>"Person", "familyName"=>"Den Heijer", "givenName"=>"C", "name"=>"C Den Heijer")
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  expect(json["includedInDataCatalog"]).to be_nil
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- expect(json["spatialCoverage"].dig("geo", "polygon").length).to eq(34)
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- expect(json["spatialCoverage"].dig("geo", "polygon").first).to eq(["4.1738852605822", "52.03913926329928"])
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+ expect(json["spatialCoverage"].dig("geo", "polygon")[0].length).to eq(34)
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+ expect(json["spatialCoverage"].dig("geo", "polygon")[0].first).to eq(["4.1738852605822", "52.03913926329928"])
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  end
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  it "from schema_org gtex" do
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: bolognese
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  version: !ruby/object:Gem::Version
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- version: 1.8.10
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+ version: '1.9'
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  platform: ruby
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  authors:
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  - Martin Fenner
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2020-10-11 00:00:00.000000000 Z
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+ date: 2021-03-24 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: maremma
@@ -520,16 +520,16 @@ dependencies:
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  name: simplecov
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - "~>"
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+ - - '='
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  - !ruby/object:Gem::Version
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- version: '0.1'
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+ version: 0.17.1
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - "~>"
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+ - - '='
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  - !ruby/object:Gem::Version
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- version: '0.1'
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+ version: 0.17.1
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  - !ruby/object:Gem::Dependency
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  name: hashdiff
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  requirement: !ruby/object:Gem::Requirement
@@ -559,9 +559,12 @@ extensions: []
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  extra_rdoc_files:
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  - README.md
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  files:
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+ - ".github/workflows/build.yml"
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+ - ".github/workflows/changelog.yml"
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+ - ".github/workflows/release.yml"
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  - ".gitignore"
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  - ".rubocop.yml"
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- - ".travis.yml"
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+ - CHANGELOG.md
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  - CITATION
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  - Gemfile
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  - Gemfile.lock
@@ -711,11 +714,24 @@ files:
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  - resources/kernel-4.3/include/datacite-titleType-v4.xsd
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  - resources/kernel-4.3/include/xml.xsd
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  - resources/kernel-4.3/metadata.xsd
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+ - resources/kernel-4.4/include/datacite-contributorType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-dateType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-descriptionType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-nameType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-numberType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-relationType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-resourceType-v4.xsd
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+ - resources/kernel-4.4/include/datacite-titleType-v4.xsd
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+ - resources/kernel-4.4/include/xml.xsd
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+ - resources/kernel-4.4/metadata.xsd
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  - resources/kernel-4/include/datacite-contributorType-v4.xsd
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  - resources/kernel-4/include/datacite-dateType-v4.xsd
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  - resources/kernel-4/include/datacite-descriptionType-v4.xsd
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  - resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd
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  - resources/kernel-4/include/datacite-nameType-v4.xsd
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+ - resources/kernel-4/include/datacite-numberType-v4.xsd
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  - resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd
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  - resources/kernel-4/include/datacite-relationType-v4.xsd
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  - resources/kernel-4/include/datacite-resourceType-v4.xsd
@@ -752,13 +768,18 @@ files:
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  - spec/fixtures/datacite-example-complicated-v3.0.xml
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  - spec/fixtures/datacite-example-complicated-v4.0.xml
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  - spec/fixtures/datacite-example-complicated-v4.1.xml
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+ - spec/fixtures/datacite-example-dissertation-v4.4.xml
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  - spec/fixtures/datacite-example-escaped-text.xml
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+ - spec/fixtures/datacite-example-full-v4.4.xml
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  - spec/fixtures/datacite-example-geolocation-2.xml
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  - spec/fixtures/datacite-example-geolocation.xml
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  - spec/fixtures/datacite-example-polygon-v4.1.xml
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+ - spec/fixtures/datacite-example-relateditems.xml
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+ - spec/fixtures/datacite-example-xs-string.xml
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  - spec/fixtures/datacite-formats-with-xs.xml
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  - spec/fixtures/datacite-funderIdentifier.xml
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  - spec/fixtures/datacite-geolocation-empty.xml
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+ - spec/fixtures/datacite-geolocationpolygons-multiple.xml
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  - spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml
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  - spec/fixtures/datacite-multiple-language.xml
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  - spec/fixtures/datacite-multiple-rights.xml
@@ -896,8 +917,10 @@ files:
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/JaLC.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/KISTI.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/OP.yml
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+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book_chapter.yml
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+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/article_id_as_page_number.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/author_literal.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book_chapter.yml
@@ -919,6 +942,7 @@ files:
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/mEDRA.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/markup.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/missing_creator.yml
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+ - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_issn.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml
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  - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/not_found_error.yml
@@ -1250,7 +1274,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubygems_version: 3.0.8
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+ rubygems_version: 3.0.3
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  signing_key:
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  specification_version: 4
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  summary: Ruby client library for conversion of DOI Metadata
data/.travis.yml DELETED
@@ -1,35 +0,0 @@
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- language: ruby
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- rvm:
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- - 2.6.5
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-
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- addons:
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- apt:
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- packages:
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- - language-pack-de
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- code_climate:
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- repo_token: $CODECLIMATE_REPO_TOKEN
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-
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- install:
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- - travis_retry bundle install
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-
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- before_script:
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- - curl -L https://codeclimate.com/downloads/test-reporter/test-reporter-latest-linux-amd64 > ./cc-test-reporter
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- - chmod +x ./cc-test-reporter
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- - ./cc-test-reporter before-build
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-
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- script:
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- - bundle exec rspec spec
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- after_script:
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- - ./cc-test-reporter after-build --exit-code $TRAVIS_TEST_RESULT
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-
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- notifications:
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- email: false
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-
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- deploy:
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- provider: rubygems
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- api_key:
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- secure: 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- gem: bolognese
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- on:
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- tags: true
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- repo: datacite/bolognese