bolognese 0.9.32 → 0.9.33

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml

@@ -2,7 +2,7 @@
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+  recorded_at: Sat, 22 Jul 2017 16:31:42 GMT
 - request:
     method: get
     uri: http://schema.org/docs/jsonldcontext.json
@@ -2459,21 +2433,21 @@ http_interactions:
       Content-Type:
       - application/ld+json; charset=utf-8
       Etag:
-      - 24751170506112659a2048647386json
+      - 24751170722145113a2048647386json
       Last-Modified:
-      - Sat, 06 May 2017 11:26:59 UTC
+      - Sat, 22 Jul 2017 14:51:13 UTC
+      Set-Cookie:
+      - GOOGAPPUID=3-2f; Path=/
       X-Cloud-Trace-Context:
-      - 2580c63432a4b3e0f9715fd16ab97b31
+      - d7a1300536dbd7d42f399ebd909df4bd
       Date:
-      - Sat, 06 May 2017 11:43:42 GMT
+      - Sat, 22 Jul 2017 16:31:48 GMT
       Server:
       - Google Frontend
       Content-Length:
-      - '128470'
-      Set-Cookie:
-      - GOOGAPPUID=3-2e; Path=/
+      - '128366'
       Expires:
-      - Sat, 06 May 2017 11:43:42 GMT
+      - Sat, 22 Jul 2017 16:31:48 GMT
     body:
       encoding: UTF-8
       string: |
@@ -2988,7 +2962,6 @@ http_interactions:
                 "LimitedAvailability": {"@id": "schema:LimitedAvailability"},
                 "LinkRole": {"@id": "schema:LinkRole"},
                 "LiquorStore": {"@id": "schema:LiquorStore"},
-                "ListItem": {"@id": "schema:ListItem"},
                 "ListenAction": {"@id": "schema:ListenAction"},
                 "LiteraryEvent": {"@id": "schema:LiteraryEvent"},
                 "LiveAlbum": {"@id": "schema:LiveAlbum"},
@@ -3115,7 +3088,6 @@ http_interactions:
                 "Nerve": {"@id": "schema:Nerve"},
                 "Neuro": {"@id": "schema:Neuro"},
                 "Neurologic": {"@id": "schema:Neurologic"},
-                "NewCondition": {"@id": "schema:NewCondition"},
                 "NewsArticle": {"@id": "schema:NewsArticle"},
                 "Newspaper": {"@id": "schema:Newspaper"},
                 "NightClub": {"@id": "schema:NightClub"},
@@ -4681,5 +4653,5 @@ http_interactions:
             }
         }
     http_version: 
-  recorded_at: Sat, 06 May 2017 11:43:42 GMT
+  recorded_at: Sat, 22 Jul 2017 16:31:48 GMT
 recorded_with: VCR 3.0.3

data/spec/readers/crossref_reader_spec.rb

@@ -56,7 +56,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.title).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes")
       expect(subject.license).to eq("id"=>"http://creativecommons.org/licenses/by/4.0")
       expect(subject.date_published).to eq("2006-12-20")
-      expect(subject.date_modified).to eq("2016-12-31T21:37:08Z")
+      expect(subject.date_modified).to eq("2017-06-17T06:26:15Z")
       expect(subject.pagination).to eq("e30")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"PLoS ONE", "issn"=>"1932-6203")
       expect(subject.provider).to eq("Crossref")
@@ -130,7 +130,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.author.first).to eq("type"=>"Person", "name"=>"Sarah E. Beck", "givenName"=>"Sarah E.", "familyName"=>"Beck")
       expect(subject.title).to eq("Paving the path to HIV neurotherapy: Predicting SIV CNS disease")
       expect(subject.date_published).to eq("2015-07")
-      expect(subject.date_modified).to eq("2016-08-20T02:19:38Z")
+      expect(subject.date_modified).to eq("2017-06-23T02:44:48Z")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"European Journal of Pharmacology", "issn"=>"00142999")
       expect(subject.provider).to eq("Crossref")
     end

data/spec/readers/datacite_reader_spec.rb

@@ -17,6 +17,7 @@ describe Bolognese::Metadata, vcr: true do
     it "Dataset" do
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
+      expect(subject.url).to eq("http://datadryad.org/resource/doi:10.5061/dryad.8515")
       expect(subject.type).to eq("Dataset")
       expect(subject.additional_type).to eq("DataPackage")
       expect(subject.resource_type_general).to eq("Dataset")
@@ -30,7 +31,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.is_referenced_by).to eq("type"=>"CreativeWork", "id"=>"https://doi.org/10.1371/journal.ppat.1000446")
       expect(subject.publisher).to eq("Dryad Digital Repository")
       expect(subject.provider).to eq("DataCite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
+      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
     end
 
     it "BlogPosting" do
@@ -38,6 +39,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.5438/4k3m-nyvg")
+      expect(subject.url).to eq("https://blog.datacite.org/eating-your-own-dog-food/")
       expect(subject.type).to eq("ScholarlyArticle")
       expect(subject.additional_type).to eq("BlogPosting")
       expect(subject.resource_type_general).to eq("Text")
@@ -59,6 +61,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.4230/lipics.tqc.2013.93")
+      expect(subject.url).to eq("http://drops.dagstuhl.de/opus/volltexte/2013/4317/")
       expect(subject.type).to eq("ScholarlyArticle")
       expect(subject.additional_type).to eq("ConferencePaper")
       expect(subject.resource_type_general).to eq("Text")
@@ -76,13 +79,14 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.5281/zenodo.48440")
+      expect(subject.url).to eq("https://zenodo.org/record/48440")
       expect(subject.type).to eq("SoftwareSourceCode")
       expect(subject.additional_type).to eq("Software")
       expect(subject.resource_type_general).to eq("Software")
       expect(subject.author).to eq("type"=>"Person", "name"=>"Kristian Garza", "givenName"=>"Kristian", "familyName"=>"Garza")
-      expect(subject.title).to eq("Analysis Tools for Crossover Experiment of UI using Choice Architecture")
+      expect(subject.title).to eq("Analysis Tools For Crossover Experiment Of Ui Using Choice Architecture")
       expect(subject.description["text"]).to start_with("This tools are used to analyse the data produced by the Crosssover Experiment")
-      expect(subject.license).to eq([{"name"=>"Open Access"}, {"id"=>"https://creativecommons.org/licenses/by-nc-sa/4.0", "name"=>"Creative Commons Attribution-NonCommercial-ShareAlike"}])
+      expect(subject.license).to eq("name"=>"Open Access")
       expect(subject.date_published).to eq("2016-03-27")
       expect(subject.is_supplement_to).to eq("type"=>"CreativeWork", "id"=>"https://github.com/kjgarza/frame_experiment_analysis/tree/v1.0")
       expect(subject.publisher).to eq("Zenodo")
@@ -95,6 +99,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.6084/m9.figshare.4234751.v1")
+      expect(subject.url).to eq("https://figshare.com/articles/RAIN_v1/4234751/1")
       expect(subject.type).to eq("Dataset")
       expect(subject.additional_type).to eq("Dataset")
       expect(subject.resource_type_general).to eq("Dataset")

data/spec/readers/schema_org_reader_spec.rb

@@ -17,7 +17,7 @@ describe Bolognese::Metadata, vcr: true do
   context "get schema_org metadata" do
     it "BlogPosting" do
       expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.5438/4k3m-nyvg")
+      expect(subject.id).to eq("https://doi.org/10.5438/0000-01hc")
       expect(subject.url).to eq("https://blog.datacite.org/eating-your-own-dog-food")
       expect(subject.type).to eq("BlogPosting")
       expect(subject.author).to eq("type"=>"Person", "id"=>"http://orcid.org/0000-0003-1419-2405", "name"=>"Martin Fenner", "givenName"=>"Martin", "familyName"=>"Fenner")

data/spec/writers/bibtex_writer_spec.rb

@@ -100,8 +100,8 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input, from: "schema_org")
       bibtex = BibTeX.parse(subject.bibtex).to_a(quotes: '').first
       expect(bibtex[:bibtex_type].to_s).to eq("article")
-      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(bibtex[:doi]).to eq("10.5438/4k3m-nyvg")
+      expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.5438/0000-01hc")
+      expect(bibtex[:doi]).to eq("10.5438/0000-01hc")
       expect(bibtex[:title]).to eq("Eating your own Dog Food")
       expect(bibtex[:author]).to eq("Fenner, Martin")
       expect(bibtex[:publisher]).to eq("DataCite")

data/spec/writers/citeproc_writer_spec.rb

@@ -55,8 +55,8 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input, from: "schema_org")
       json = JSON.parse(subject.citeproc)
       expect(json["type"]).to eq("post-weblog")
-      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
+      expect(json["id"]).to eq("https://doi.org/10.5438/0000-01hc")
+      expect(json["DOI"]).to eq("10.5438/0000-01hc")
       expect(json["title"]).to eq("Eating your own Dog Food")
       expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
       expect(json["publisher"]).to eq("DataCite")

data/spec/writers/crosscite_writer_spec.rb

@@ -6,6 +6,7 @@ describe Bolognese::Metadata, vcr: true do
       input = "10.7554/eLife.01567"
       subject = Bolognese::Metadata.new(input: input, from: "crossref")
       crosscite = JSON.parse(subject.crosscite)
+      expect(crosscite.fetch("url")).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
       expect(crosscite.fetch("resource_type_general")).to eq("Text")
       expect(crosscite.fetch("title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
       expect(crosscite.fetch("references").length).to eq(25)

data/spec/writers/datacite_json_writer_spec.rb

@@ -6,6 +6,7 @@ describe Bolognese::Metadata, vcr: true do
       input = "10.7554/eLife.01567"
       subject = Bolognese::Metadata.new(input: input, from: "crossref")
       datacite = JSON.parse(subject.datacite_json)
+      expect(datacite.fetch("url")).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
       expect(datacite.fetch("resource_type_general")).to eq("Text")
       expect(datacite.fetch("title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
       expect(datacite.fetch("references").length).to eq(25)
@@ -17,6 +18,7 @@ describe Bolognese::Metadata, vcr: true do
       input = "https://doi.org/10.1155/2012/291294"
       subject = Bolognese::Metadata.new(input: input, from: "crossref")
       datacite = JSON.parse(subject.datacite_json)
+      expect(datacite.fetch("url")).to eq("http://www.hindawi.com/journals/pm/2012/291294/")
       expect(datacite.fetch("resource_type_general")).to eq("Text")
       expect(datacite.fetch("creator").length).to eq(7)
       expect(datacite.fetch("creator").first).to eq("type"=>"Person", "name"=>"Wendy Thanassi", "givenName"=>"Wendy", "familyName"=>"Thanassi")

data/spec/writers/datacite_writer_spec.rb

@@ -106,7 +106,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.is_referenced_by).to eq("type"=>"CreativeWork", "id"=>"https://doi.org/10.1371/journal.ppat.1000446")
       expect(subject.publisher).to eq("Dryad Digital Repository")
       expect(subject.provider).to eq("DataCite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
+      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
 
       datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
       expect(datacite.fetch("xsi:schemaLocation", "").split(" ").first).to eq("http://datacite.org/schema/kernel-4")

data/spec/writers/ris_writer_spec.rb

@@ -45,13 +45,14 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[1]).to eq("T1 - Visions and reality: the idea of competence-oriented assessment for German medical students is not yet realised in licensing examinations")
       expect(ris[2]).to eq("AU - Huber-Lang, Markus")
       expect(ris[8]).to eq("DO - 10.3205/zma001102")
-      expect(ris[9]).to start_with("AB - Objective: Competence orientation")
-      expect(ris[10]).to eq("KW - medical competence")
-      expect(ris[19]).to eq("PY - 2017")
-      expect(ris[20]).to eq("PB - German Medical Science GMS Publishing House")
-      expect(ris[21]).to eq("AN - urn:nbn:de:0183-zma0011024")
-      expect(ris[23]).to eq("LA - en")
-      expect(ris[24]).to eq("ER - ")
+      expect(ris[9]).to start_with("UR - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml")
+      expect(ris[10]).to start_with("AB - Objective: Competence orientation")
+      expect(ris[11]).to eq("KW - medical competence")
+      expect(ris[20]).to eq("PY - 2017")
+      expect(ris[21]).to eq("PB - German Medical Science GMS Publishing House")
+      expect(ris[22]).to eq("AN - urn:nbn:de:0183-zma0011024")
+      expect(ris[24]).to eq("LA - en")
+      expect(ris[25]).to eq("ER - ")
     end
 
     it "Crossref DOI" do
@@ -80,12 +81,13 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[1]).to eq("T1 - Eating your own Dog Food")
       expect(ris[2]).to eq("AU - Fenner, Martin")
       expect(ris[3]).to eq("DO - 10.5438/4k3m-nyvg")
-      expect(ris[4]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-      expect(ris[5]).to eq("KW - datacite")
-      expect(ris[8]).to eq("PY - 2016")
-      expect(ris[9]).to eq("PB - DataCite")
-      expect(ris[10]).to eq("AN - MS-49-3632-5083")
-      expect(ris[11]).to eq("ER - ")
+      expect(ris[4]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food/")
+      expect(ris[5]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
+      expect(ris[6]).to eq("KW - datacite")
+      expect(ris[9]).to eq("PY - 2016")
+      expect(ris[10]).to eq("PB - DataCite")
+      expect(ris[11]).to eq("AN - MS-49-3632-5083")
+      expect(ris[12]).to eq("ER - ")
     end
 
     it "BlogPosting Citeproc JSON" do
@@ -128,7 +130,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[1]).to eq("T1 - Eating your own Dog Food")
       expect(ris[2]).to eq("T2 - DataCite Blog")
       expect(ris[3]).to eq("AU - Fenner, Martin")
-      expect(ris[4]).to eq("DO - 10.5438/4k3m-nyvg")
+      expect(ris[4]).to eq("DO - 10.5438/0000-01hc")
       expect(ris[5]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food")
       expect(ris[6]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
       expect(ris[7]).to eq("KW - datacite")
@@ -147,11 +149,12 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[1]).to eq("T1 - Data from: A new malaria agent in African hominids.")
       expect(ris[2]).to eq("AU - Ollomo, Benjamin")
       expect(ris[10]).to eq("DO - 10.5061/dryad.8515")
-      expect(ris[12]).to eq("KW - Malaria")
-      expect(ris[18]).to eq("PY - 2011")
-      expect(ris[19]).to eq("PB - Dryad Digital Repository")
-      expect(ris[20]).to eq("AN - Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
-      expect(ris[21]).to eq("ER - ")
+      expect(ris[11]).to eq("UR - http://datadryad.org/resource/doi:10.5061/dryad.8515")
+      expect(ris[13]).to eq("KW - Malaria")
+      expect(ris[19]).to eq("PY - 2011")
+      expect(ris[20]).to eq("PB - Dryad Digital Repository")
+      expect(ris[21]).to eq("AN - Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
+      expect(ris[22]).to eq("ER - ")
     end
 
     it "maremma" do