bolognese 0.2.2
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- checksums.yaml +7 -0
- data/.gitignore +56 -0
- data/.travis.yml +23 -0
- data/Gemfile +3 -0
- data/Gemfile.lock +118 -0
- data/LICENSE +21 -0
- data/README.md +3 -0
- data/Rakefile +12 -0
- data/bin/bolognese +5 -0
- data/bolognese.gemspec +40 -0
- data/lib/bolognese.rb +12 -0
- data/lib/bolognese/author_utils.rb +61 -0
- data/lib/bolognese/cli.rb +38 -0
- data/lib/bolognese/crossref.rb +202 -0
- data/lib/bolognese/datacite.rb +157 -0
- data/lib/bolognese/date_utils.rb +48 -0
- data/lib/bolognese/doi_utils.rb +48 -0
- data/lib/bolognese/github.rb +106 -0
- data/lib/bolognese/metadata.rb +30 -0
- data/lib/bolognese/orcid.rb +24 -0
- data/lib/bolognese/pid_utils.rb +23 -0
- data/lib/bolognese/pubmed.rb +34 -0
- data/lib/bolognese/string.rb +5 -0
- data/lib/bolognese/utils.rb +27 -0
- data/lib/bolognese/version.rb +3 -0
- data/spec/cli_spec.rb +37 -0
- data/spec/crossref_spec.rb +113 -0
- data/spec/datacite_spec.rb +49 -0
- data/spec/doi_spec.rb +89 -0
- data/spec/fixtures/crossref.xml +742 -0
- data/spec/fixtures/datacite.xml +40 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_crossref.yml +760 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_schema_org.yml +1476 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_datacite.yml +214 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_schema_org.yml +384 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/crossref.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/datacite.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/medra.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/not_found.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_test.yml +843 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_SICI_DOI.yml +277 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_data_citation.yml +15755 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/date_in_future.yml +2691 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/journal_article.yml +1857 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/not_found_error.yml +93 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/posted_content.yml +5715 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/BlogPosting.yml +307 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/Dataset.yml +343 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref_doi_not_url.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite_doi_http.yml +44 -0
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/orcid.yml +44 -0
- data/spec/metadata_spec.rb +35 -0
- data/spec/orcid_spec.rb +23 -0
- data/spec/spec_helper.rb +88 -0
- metadata +419 -0
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module Bolognese
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module Utils
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def parse_attributes(element)
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if element.is_a?(String)
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element
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elsif element.is_a?(Hash)
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element.fetch("text", nil)
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elsif element.is_a?(Array)
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element.map { |e| e.fetch("text", nil) }
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else
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nil
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end
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end
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def parse_attribute(element)
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if element.is_a?(String)
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element
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elsif element.is_a?(Hash)
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element.fetch("text", nil)
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elsif element.is_a?(Array)
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element.first.fetch("text", nil)
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else
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nil
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end
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end
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end
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end
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data/spec/cli_spec.rb
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require 'spec_helper'
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require 'bolognese/cli'
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describe Bolognese::CLI do
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let(:subject) do
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described_class.new
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end
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describe "read", vcr: true do
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context "crossref" do
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let(:id) { "10.7554/eLife.01567" }
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it 'as schema_org' do
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subject.options = { as: "schema_org" }
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expect { subject.read id }.to output(/additionalType/).to_stdout
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end
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it 'as crossref' do
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subject.options = { as: "crossref" }
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expect { subject.read id }.to output(/journal_metadata/).to_stdout
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end
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end
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context "datacite" do
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let(:id) { "10.5061/dryad.8515" }
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it 'as schema_org' do
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subject.options = { as: "schema_org" }
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expect { subject.read id }.to output(/Phylogeny, Malaria, Parasites, Taxonomy, Mitochondrial genome, Africa, Plasmodium/).to_stdout
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end
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it 'as datacite' do
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subject.options = { as: "datacite" }
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expect { subject.read id }.to output(/http:\/\/datacite.org\/schema\/kernel-3/).to_stdout
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end
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end
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end
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end
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require 'spec_helper'
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describe Bolognese::Crossref, vcr: true do
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context "get metadata" do
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let(:id) { "https://doi.org/10.1371/journal.pone.0000030" }
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subject { Bolognese::Crossref.new(id) }
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it "journal article" do
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expect(subject.id).to eq(id)
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expect(subject.type).to eq("ScholarlyArticle")
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expect(subject.additional_type).to eq("JournalArticle")
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expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Markus", "familyName"=>"Ralser"},
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{"@type"=>"Person", "givenName"=>"Gino", "familyName"=>"Heeren"},
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{"@type"=>"Person", "givenName"=>"Michael", "familyName"=>"Breitenbach"},
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{"@type"=>"Person", "givenName"=>"Hans", "familyName"=>"Lehrach"},
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{"@type"=>"Person", "givenName"=>"Sylvia", "familyName"=>"Krobitsch"}])
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expect(subject.editor).to eq([{"@type"=>"Person", "givenName"=>"Guilhem", "familyName"=>"Janbon"}])
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expect(subject.name).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes")
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expect(subject.license).to eq("http://creativecommons.org/licenses/by/4.0/")
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expect(subject.date_published).to eq("2006-12-20")
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expect(subject.date_modified).to eq("2016-12-31T21:37:08Z")
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expect(subject.page_start).to eq("e30")
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expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"PLoS ONE", "issn"=>"1932-6203")
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expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
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end
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it "posted_content" do
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id = "https://doi.org/10.1101/097196"
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subject = Bolognese::Crossref.new(id)
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expect(subject.id).to eq(id)
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expect(subject.type).to eq("CreativeWork")
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expect(subject.additional_type).to eq("PostedContent")
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expect(subject.author.count).to eq(10)
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expect(subject.author.last).to eq("@type"=>"Person", "@id"=>"http://orcid.org/0000-0003-4060-7360", "givenName"=>"Timothy", "familyName"=>"Clark")
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expect(subject.name).to eq("A Data Citation Roadmap for Scholarly Data Repositories")
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expect(subject.alternate_name).to eq("biorxiv;097196v1")
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expect(subject.description).to start_with("This article presents a practical roadmap")
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expect(subject.date_published).to eq("2016-12-28")
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expect(subject.date_modified).to eq("2016-12-29T00:10:20Z")
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expect(subject.is_part_of).to be_nil
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expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
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end
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it "DOI with data citation" do
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id = "10.7554/eLife.01567"
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subject = Bolognese::Crossref.new(id)
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expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
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expect(subject.type).to eq("ScholarlyArticle")
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expect(subject.additional_type).to eq("JournalArticle")
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expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Martial", "familyName"=>"Sankar"},
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{"@type"=>"Person", "givenName"=>"Kaisa", "familyName"=>"Nieminen"},
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{"@type"=>"Person", "givenName"=>"Laura", "familyName"=>"Ragni"},
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{"@type"=>"Person", "givenName"=>"Ioannis", "familyName"=>"Xenarios"},
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{"@type"=>"Person", "givenName"=>"Christian S", "familyName"=>"Hardtke"}])
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expect(subject.license).to eq("http://creativecommons.org/licenses/by/3.0/")
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expect(subject.name).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
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expect(subject.date_published).to eq("2014-02-11")
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expect(subject.date_modified).to eq("2015-08-11T05:35:02Z")
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expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"eLife", "issn"=>"2050-084X")
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expect(subject.citation.count).to eq(27)
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expect(subject.citation[21]).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.b835k", "position"=>"22", "datePublished"=>"2014")
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expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
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end
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it "DOI with SICI DOI" do
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id = "https://doi.org/10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
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subject = Bolognese::Crossref.new(id)
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expect(subject.id).to eq("https://doi.org/10.1890/0012-9658(2006)87%5B2832:tiopma%5D2.0.co;2")
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expect(subject.type).to eq("ScholarlyArticle")
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expect(subject.additional_type).to eq("JournalArticle")
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expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"A.", "familyName"=>"Fenton"}, {"@type"=>"Person", "givenName"=>"S. A.", "familyName"=>"Rands"}])
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expect(subject.license).to eq("http://doi.wiley.com/10.1002/tdm_license_1")
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expect(subject.name).to eq("THE IMPACT OF PARASITE MANIPULATION AND PREDATOR FORAGING BEHAVIOR ON PREDATOR–PREY COMMUNITIES")
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expect(subject.date_published).to eq("2006-11")
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expect(subject.date_modified).to eq("2016-10-04T17:20:17Z")
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expect(subject.page_start).to eq("2832")
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expect(subject.page_end).to eq("2841")
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expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"Ecology", "issn"=>"0012-9658")
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expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
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end
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it "date in future" do
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id = "https://doi.org/10.1016/j.ejphar.2015.03.018"
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subject = Bolognese::Crossref.new(id)
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expect(subject.id).to eq(id)
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expect(subject.type).to eq("ScholarlyArticle")
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expect(subject.additional_type).to eq("JournalArticle")
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expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Sarah E.", "familyName"=>"Beck"},
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{"@type"=>"Person", "givenName"=>"Suzanne E.", "familyName"=>"Queen"},
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{"@type"=>"Person", "givenName"=>"Kenneth W.", "familyName"=>"Witwer"},
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{"@type"=>"Person", "givenName"=>"Kelly A.", "familyName"=>"Metcalf Pate"},
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{"@type"=>"Person", "givenName"=>"Lisa M.", "familyName"=>"Mangus"},
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{"@type"=>"Person", "givenName"=>"Lucio", "familyName"=>"Gama"},
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{"@type"=>"Person", "givenName"=>"Robert J.", "familyName"=>"Adams"},
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{"@type"=>"Person", "givenName"=>"Janice E.", "familyName"=>"Clements"},
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{"@type"=>"Person", "givenName"=>"M.", "familyName"=>"Christine Zink"},
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{"@type"=>"Person", "givenName"=>"Joseph L.", "familyName"=>"Mankowski"}])
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expect(subject.name).to eq("Paving the path to HIV neurotherapy: Predicting SIV CNS disease")
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expect(subject.date_published).to eq("2015-07")
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expect(subject.date_modified).to eq("2016-08-20T02:19:38Z")
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expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"European Journal of Pharmacology", "issn"=>"00142999")
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expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
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end
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it "not found error" do
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id = "https://doi.org/10.1371/journal.pone.0000030x"
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subject = Bolognese::Crossref.new(id)
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expect(subject.id).to eq(id)
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expect(subject.exists?).to be false
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end
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end
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end
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require 'spec_helper'
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describe Bolognese::Datacite, vcr: true do
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context "get metadata" do
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let(:id) { "https://doi.org/10.5061/DRYAD.8515" }
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subject { Bolognese::Datacite.new(id) }
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it "Dataset" do
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expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
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expect(subject.type).to eq("Dataset")
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expect(subject.additional_type).to eq("DataPackage")
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expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Benjamin", "familyName"=>"Ollomo"},
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{"@type"=>"Person", "givenName"=>"Patrick", "familyName"=>"Durand"},
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{"@type"=>"Person", "givenName"=>"Franck", "familyName"=>"Prugnolle"},
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{"@type"=>"Person", "givenName"=>"Emmanuel J. P.", "familyName"=>"Douzery"},
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{"@type"=>"Person", "givenName"=>"Céline", "familyName"=>"Arnathau"},
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18
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{"@type"=>"Person", "givenName"=>"Dieudonné", "familyName"=>"Nkoghe"},
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{"@type"=>"Person", "givenName"=>"Eric", "familyName"=>"Leroy"},
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{"@type"=>"Person", "givenName"=>"François", "familyName"=>"Renaud"}])
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expect(subject.name).to eq("Data from: A new malaria agent in African hominids.")
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expect(subject.alternate_name).to eq("Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
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23
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expect(subject.license).to eq("http://creativecommons.org/publicdomain/zero/1.0/")
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24
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expect(subject.date_published).to eq("2011")
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25
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expect(subject.has_part).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/1"},
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{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/2"}])
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expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.1371/journal.ppat.1000446"}])
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expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
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end
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30
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31
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it "BlogPosting" do
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id = "https://doi.org/10.5438/4K3M-NYVG"
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subject = Bolognese::Datacite.new(id)
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expect(subject.id).to eq("https://doi.org/10.5438/4k3m-nyvg")
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35
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expect(subject.type).to eq("ScholarlyArticle")
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36
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expect(subject.additional_type).to eq("BlogPosting")
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37
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expect(subject.author).to eq([{"@type"=>"Person", "@id"=>"http://orcid.org/0000-0003-1419-2405", "givenName"=>"Martin", "familyName"=>"Fenner"}])
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38
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expect(subject.name).to eq("Eating your own Dog Food")
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39
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expect(subject.alternate_name).to eq("MS-49-3632-5083")
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40
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expect(subject.description).to start_with("Eating your own dog food")
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41
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expect(subject.date_published).to eq("2016-12-20")
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42
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expect(subject.date_modified).to eq("2016-12-20")
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43
|
+
expect(subject.is_part_of).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/0000-00ss")
|
44
|
+
expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/0012"},
|
45
|
+
{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/55e5-t5c0"}])
|
46
|
+
expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
|
47
|
+
end
|
48
|
+
end
|
49
|
+
end
|
data/spec/doi_spec.rb
ADDED
@@ -0,0 +1,89 @@
|
|
1
|
+
require 'spec_helper'
|
2
|
+
|
3
|
+
describe Bolognese::Crossref, vcr: true do
|
4
|
+
let(:id) { "https://doi.org/10.1371/journal.pone.0000030" }
|
5
|
+
|
6
|
+
subject { Bolognese::Crossref.new(id) }
|
7
|
+
|
8
|
+
context "normalize doi" do
|
9
|
+
it "doi" do
|
10
|
+
doi = "10.5061/DRYAD.8515"
|
11
|
+
response = subject.normalize_doi(doi)
|
12
|
+
expect(response).to eq("https://doi.org/10.5061/dryad.8515")
|
13
|
+
end
|
14
|
+
|
15
|
+
it "doi with protocol" do
|
16
|
+
doi = "doi:10.5061/DRYAD.8515"
|
17
|
+
response = subject.normalize_doi(doi)
|
18
|
+
expect(response).to eq("https://doi.org/10.5061/dryad.8515")
|
19
|
+
end
|
20
|
+
|
21
|
+
it "SICI doi" do
|
22
|
+
doi = "10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
|
23
|
+
response = subject.normalize_doi(doi)
|
24
|
+
expect(response).to eq("https://doi.org/10.1890/0012-9658(2006)87%5B2832:tiopma%5D2.0.co;2")
|
25
|
+
end
|
26
|
+
|
27
|
+
it "https url" do
|
28
|
+
doi = "https://doi.org/10.5061/dryad.8515"
|
29
|
+
response = subject.normalize_doi(doi)
|
30
|
+
expect(response).to eq("https://doi.org/10.5061/dryad.8515")
|
31
|
+
end
|
32
|
+
|
33
|
+
it "dx.doi.org url" do
|
34
|
+
doi = "http://dx.doi.org/10.5061/dryad.8515"
|
35
|
+
response = subject.normalize_doi(doi)
|
36
|
+
expect(response).to eq("https://doi.org/10.5061/dryad.8515")
|
37
|
+
end
|
38
|
+
|
39
|
+
it "not valid doi prefix" do
|
40
|
+
doi = "https://doi.org/20.5061/dryad.8515"
|
41
|
+
response = subject.normalize_doi(doi)
|
42
|
+
expect(response).to be_nil
|
43
|
+
end
|
44
|
+
|
45
|
+
it "doi prefix with string" do
|
46
|
+
doi = "https://doi.org/10.506X/dryad.8515"
|
47
|
+
response = subject.normalize_doi(doi)
|
48
|
+
expect(response).to be_nil
|
49
|
+
end
|
50
|
+
|
51
|
+
it "doi prefix too long" do
|
52
|
+
doi = "https://doi.org/10.506123/dryad.8515"
|
53
|
+
response = subject.normalize_doi(doi)
|
54
|
+
expect(response).to be_nil
|
55
|
+
end
|
56
|
+
|
57
|
+
it "doi from url without doi proxy" do
|
58
|
+
doi = "https://handle.net/10.5061/dryad.8515"
|
59
|
+
response = subject.normalize_doi(doi)
|
60
|
+
expect(response).to be_nil
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
context "doi registration agency" do
|
65
|
+
it "datacite" do
|
66
|
+
doi = "https://doi.org/10.5061/dryad.8515"
|
67
|
+
response = subject.get_doi_ra(doi)
|
68
|
+
expect(response["name"]).to eq("DataCite")
|
69
|
+
end
|
70
|
+
|
71
|
+
it "crossref" do
|
72
|
+
doi = "https://doi.org/10.1371/journal.pone.0000030"
|
73
|
+
response = subject.get_doi_ra(doi)
|
74
|
+
expect(response["name"]).to eq("Crossref")
|
75
|
+
end
|
76
|
+
|
77
|
+
it "medra" do
|
78
|
+
doi = "https://doi.org/10.1392/roma081203"
|
79
|
+
response = subject.get_doi_ra(doi)
|
80
|
+
expect(response["name"]).to eq("mEDRA")
|
81
|
+
end
|
82
|
+
|
83
|
+
it "not found" do
|
84
|
+
doi = "https://doi.org/10.5061/dryad.8515x"
|
85
|
+
response = subject.get_doi_ra(doi)
|
86
|
+
expect(response["errors"]).to eq([{"DOI"=>"10.5061/DRYAD.8515X", "status"=>"Invalid DOI"}])
|
87
|
+
end
|
88
|
+
end
|
89
|
+
end
|
@@ -0,0 +1,742 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<doi_records>
|
3
|
+
<doi_record owner="10.1371" timestamp="2016-12-31 22:37:08">
|
4
|
+
<crossref>
|
5
|
+
<journal>
|
6
|
+
<journal_metadata language="en">
|
7
|
+
<full_title>PLoS ONE</full_title>
|
8
|
+
<abbrev_title>PLoS ONE</abbrev_title>
|
9
|
+
<issn media_type="electronic">1932-6203</issn>
|
10
|
+
</journal_metadata>
|
11
|
+
<journal_issue>
|
12
|
+
<publication_date media_type="online">
|
13
|
+
<month>12</month>
|
14
|
+
<day>20</day>
|
15
|
+
<year>2006</year>
|
16
|
+
</publication_date>
|
17
|
+
<journal_volume>
|
18
|
+
<volume>1</volume>
|
19
|
+
</journal_volume>
|
20
|
+
<issue>1</issue>
|
21
|
+
</journal_issue>
|
22
|
+
<journal_article publication_type="full_text">
|
23
|
+
<titles>
|
24
|
+
<title>Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes</title>
|
25
|
+
</titles>
|
26
|
+
<contributors>
|
27
|
+
<person_name contributor_role="author" sequence="first">
|
28
|
+
<given_name>Markus</given_name>
|
29
|
+
<surname>Ralser</surname>
|
30
|
+
</person_name>
|
31
|
+
<person_name contributor_role="author" sequence="additional">
|
32
|
+
<given_name>Gino</given_name>
|
33
|
+
<surname>Heeren</surname>
|
34
|
+
</person_name>
|
35
|
+
<person_name contributor_role="author" sequence="additional">
|
36
|
+
<given_name>Michael</given_name>
|
37
|
+
<surname>Breitenbach</surname>
|
38
|
+
</person_name>
|
39
|
+
<person_name contributor_role="author" sequence="additional">
|
40
|
+
<given_name>Hans</given_name>
|
41
|
+
<surname>Lehrach</surname>
|
42
|
+
</person_name>
|
43
|
+
<person_name contributor_role="author" sequence="additional">
|
44
|
+
<given_name>Sylvia</given_name>
|
45
|
+
<surname>Krobitsch</surname>
|
46
|
+
</person_name>
|
47
|
+
<person_name contributor_role="editor" sequence="first">
|
48
|
+
<given_name>Guilhem</given_name>
|
49
|
+
<surname>Janbon</surname>
|
50
|
+
</person_name>
|
51
|
+
</contributors>
|
52
|
+
<publication_date media_type="online">
|
53
|
+
<month>12</month>
|
54
|
+
<day>20</day>
|
55
|
+
<year>2006</year>
|
56
|
+
</publication_date>
|
57
|
+
<pages>
|
58
|
+
<first_page>e30</first_page>
|
59
|
+
</pages>
|
60
|
+
<publisher_item>
|
61
|
+
<item_number>10.1371/journal.pone.0000030</item_number>
|
62
|
+
</publisher_item>
|
63
|
+
<crossmark>
|
64
|
+
<crossmark_version>1</crossmark_version>
|
65
|
+
<crossmark_policy>10.1371/journal.pone.corrections_policy</crossmark_policy>
|
66
|
+
<crossmark_domains>
|
67
|
+
<crossmark_domain>
|
68
|
+
<domain>www.plosone.org</domain>
|
69
|
+
</crossmark_domain>
|
70
|
+
</crossmark_domains>
|
71
|
+
<crossmark_domain_exclusive>false</crossmark_domain_exclusive>
|
72
|
+
<custom_metadata>
|
73
|
+
<program name="AccessIndicators">
|
74
|
+
<license_ref>http://creativecommons.org/licenses/by/4.0/</license_ref>
|
75
|
+
</program>
|
76
|
+
</custom_metadata>
|
77
|
+
</crossmark>
|
78
|
+
<doi_data>
|
79
|
+
<doi>10.1371/journal.pone.0000030</doi>
|
80
|
+
<timestamp>20161231025645</timestamp>
|
81
|
+
<resource>http://dx.plos.org/10.1371/journal.pone.0000030</resource>
|
82
|
+
<collection property="crawler-based">
|
83
|
+
<item crawler="iParadigms">
|
84
|
+
<resource>http://dx.plos.org/10.1371/journal.pone.0000030</resource>
|
85
|
+
</item>
|
86
|
+
</collection>
|
87
|
+
</doi_data>
|
88
|
+
<citation_list>
|
89
|
+
<citation key="ref1">
|
90
|
+
<journal_title>N Engl J Med</journal_title>
|
91
|
+
<author>AS Schneider</author>
|
92
|
+
<volume>272</volume>
|
93
|
+
<first_page>229</first_page>
|
94
|
+
<cYear>1965</cYear>
|
95
|
+
<article_title>Hereditary Hemolytic Anemia with Triosephosphate Isomerase Deficiency.</article_title>
|
96
|
+
</citation>
|
97
|
+
<citation key="ref2">
|
98
|
+
<journal_title>Baillieres Best Pract Res Clin Haematol</journal_title>
|
99
|
+
<author>AS Schneider</author>
|
100
|
+
<volume>13</volume>
|
101
|
+
<first_page>119</first_page>
|
102
|
+
<cYear>2000</cYear>
|
103
|
+
<article_title>Triosephosphate isomerase deficiency: historical perspectives and molecular aspects.</article_title>
|
104
|
+
</citation>
|
105
|
+
<citation key="ref3">
|
106
|
+
<journal_title>Blood Cells Mol Dis</journal_title>
|
107
|
+
<author>A Schneider</author>
|
108
|
+
<volume>22</volume>
|
109
|
+
<first_page>82</first_page>
|
110
|
+
<cYear>1996</cYear>
|
111
|
+
<article_title>Hematologically important mutations: triosephosphate isomerase.</article_title>
|
112
|
+
</citation>
|
113
|
+
<citation key="ref4">
|
114
|
+
<journal_title>Biochem Soc Trans</journal_title>
|
115
|
+
<author>J Olah</author>
|
116
|
+
<volume>30</volume>
|
117
|
+
<first_page>30</first_page>
|
118
|
+
<cYear>2002</cYear>
|
119
|
+
<article_title>Triosephosphate isomerase deficiency: a neurodegenerative misfolding disease.</article_title>
|
120
|
+
</citation>
|
121
|
+
<citation key="ref5">
|
122
|
+
<journal_title>Am J Hum Genet</journal_title>
|
123
|
+
<author>M Watanabe</author>
|
124
|
+
<volume>58</volume>
|
125
|
+
<first_page>308</first_page>
|
126
|
+
<cYear>1996</cYear>
|
127
|
+
<article_title>Molecular analysis of a series of alleles in humans with reduced activity at the triosephosphate isomerase locus.</article_title>
|
128
|
+
</citation>
|
129
|
+
<citation key="ref6">
|
130
|
+
<journal_title>Ann Hum Genet</journal_title>
|
131
|
+
<author>HW Mohrenweiser</author>
|
132
|
+
<volume>51 ( Pt 4)</volume>
|
133
|
+
<first_page>303</first_page>
|
134
|
+
<cYear>1987</cYear>
|
135
|
+
<article_title>Frequency and distribution of rare electrophoretic mobility variants in a population of human newborns in Ann Arbor, Michigan.</article_title>
|
136
|
+
</citation>
|
137
|
+
<citation key="ref7">
|
138
|
+
<journal_title>Pediatr Res</journal_title>
|
139
|
+
<author>HW Mohrenweiser</author>
|
140
|
+
<volume>16</volume>
|
141
|
+
<first_page>960</first_page>
|
142
|
+
<cYear>1982</cYear>
|
143
|
+
<article_title>Elevated frequency of carriers for triosephosphate isomerase deficiency in newborn infants.</article_title>
|
144
|
+
</citation>
|
145
|
+
<citation key="ref8">
|
146
|
+
<journal_title>Hum Genet</journal_title>
|
147
|
+
<author>SW Eber</author>
|
148
|
+
<volume>67</volume>
|
149
|
+
<first_page>336</first_page>
|
150
|
+
<cYear>1984</cYear>
|
151
|
+
<article_title>Prevalence of partial deficiency of red cell triosephosphate isomerase in Germany–a study of 3000 people.</article_title>
|
152
|
+
</citation>
|
153
|
+
<citation key="ref9">
|
154
|
+
<journal_title>Am J Hum Genet</journal_title>
|
155
|
+
<author>JV Neel</author>
|
156
|
+
<volume>42</volume>
|
157
|
+
<first_page>663</first_page>
|
158
|
+
<cYear>1988</cYear>
|
159
|
+
<article_title>Search for mutations altering protein charge and/or function in children of atomic bomb survivors: final report.</article_title>
|
160
|
+
</citation>
|
161
|
+
<citation key="ref10">
|
162
|
+
<journal_title>Proc Natl Acad Sci U S A</journal_title>
|
163
|
+
<author>HW Mohrenweiser</author>
|
164
|
+
<volume>78</volume>
|
165
|
+
<first_page>5046</first_page>
|
166
|
+
<cYear>1981</cYear>
|
167
|
+
<article_title>Frequency of enzyme deficiency variants in erythrocytes of newborn infants.</article_title>
|
168
|
+
</citation>
|
169
|
+
<citation key="ref11">
|
170
|
+
<journal_title>Eur J Clin Invest</journal_title>
|
171
|
+
<author>SW Eber</author>
|
172
|
+
<volume>9</volume>
|
173
|
+
<first_page>195</first_page>
|
174
|
+
<cYear>1979</cYear>
|
175
|
+
<article_title>Hereditary deficiency of triosephosphate isomerase in four unrelated families.</article_title>
|
176
|
+
</citation>
|
177
|
+
<citation key="ref12">
|
178
|
+
<journal_title>Genetics</journal_title>
|
179
|
+
<author>S Merkle</author>
|
180
|
+
<volume>123</volume>
|
181
|
+
<first_page>837</first_page>
|
182
|
+
<cYear>1989</cYear>
|
183
|
+
<article_title>Characterization of triosephosphate isomerase mutants with reduced enzyme activity in Mus musculus.</article_title>
|
184
|
+
</citation>
|
185
|
+
<citation key="ref13">
|
186
|
+
<journal_title>J Theor Biol</journal_title>
|
187
|
+
<author>F Orosz</author>
|
188
|
+
<volume>182</volume>
|
189
|
+
<first_page>437</first_page>
|
190
|
+
<cYear>1996</cYear>
|
191
|
+
<article_title>Triosephosphate isomerase deficiency: predictions and facts.</article_title>
|
192
|
+
</citation>
|
193
|
+
<citation key="ref14">
|
194
|
+
<journal_title>Proc Natl Acad Sci U S A</journal_title>
|
195
|
+
<author>IO Daar</author>
|
196
|
+
<volume>83</volume>
|
197
|
+
<first_page>7903</first_page>
|
198
|
+
<cYear>1986</cYear>
|
199
|
+
<article_title>Human triose-phosphate isomerase deficiency: a single amino acid substitution results in a thermolabile enzyme.</article_title>
|
200
|
+
</citation>
|
201
|
+
<citation key="ref15">
|
202
|
+
<journal_title>Hum Mutat</journal_title>
|
203
|
+
<author>R Arya</author>
|
204
|
+
<volume>10</volume>
|
205
|
+
<first_page>290</first_page>
|
206
|
+
<cYear>1997</cYear>
|
207
|
+
<article_title>Evidence for founder effect of the Glu104Asp substitution and identification of new mutations in triosephosphate isomerase deficiency.</article_title>
|
208
|
+
</citation>
|
209
|
+
<citation key="ref16">
|
210
|
+
<journal_title>Hum Genet</journal_title>
|
211
|
+
<author>BA Perry</author>
|
212
|
+
<volume>88</volume>
|
213
|
+
<first_page>634</first_page>
|
214
|
+
<cYear>1992</cYear>
|
215
|
+
<article_title>Human triosephosphate isomerase: substitution of Arg for Gly at position 122 in a thermolabile electromorph variant, TPI-Manchester.</article_title>
|
216
|
+
</citation>
|
217
|
+
<citation key="ref17">
|
218
|
+
<journal_title>Blood</journal_title>
|
219
|
+
<author>C Valentin</author>
|
220
|
+
<volume>96</volume>
|
221
|
+
<first_page>1130</first_page>
|
222
|
+
<cYear>2000</cYear>
|
223
|
+
<article_title>Triose phosphate isomerase deficiency in 3 French families: two novel null alleles, a frameshift mutation (TPI Alfortville) and an alteration in the initiation codon (TPI Paris).</article_title>
|
224
|
+
</citation>
|
225
|
+
<citation key="ref18">
|
226
|
+
<journal_title>Am J Hum Genet</journal_title>
|
227
|
+
<author>ML Chang</author>
|
228
|
+
<volume>52</volume>
|
229
|
+
<first_page>1260</first_page>
|
230
|
+
<cYear>1993</cYear>
|
231
|
+
<article_title>Human triosephosphate isomerase deficiency resulting from mutation of Phe-240.</article_title>
|
232
|
+
</citation>
|
233
|
+
<citation key="ref19">
|
234
|
+
<journal_title>Hum Genet</journal_title>
|
235
|
+
<author>S Hollan</author>
|
236
|
+
<volume>92</volume>
|
237
|
+
<first_page>486</first_page>
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