bolognese 0.13.4 → 0.13.6

data/spec/readers/crossref_reader_spec.rb

@@ -32,7 +32,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.title).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
       expect(subject.date_published).to eq("2014-02-11")
       expect(subject.publication_year).to eq(2014)
-      expect(subject.date_modified).to eq("2017-10-18T19:09:43Z")
+      expect(subject.date_modified).to eq("2018-08-23T13:41:49Z")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"eLife", "issn"=>"2050-084X")
       expect(subject.container_title).to eq("eLife")
       expect(subject.references.count).to eq(26)
@@ -113,7 +113,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.license).to eq("id"=>"http://doi.wiley.com/10.1002/tdm_license_1.1")
       expect(subject.title).to eq("THE IMPACT OF PARASITE MANIPULATION AND PREDATOR FORAGING BEHAVIOR ON PREDATOR–PREY COMMUNITIES")
       expect(subject.date_published).to eq("2006-11")
-      expect(subject.date_modified).to eq("2017-04-01T06:47:57Z")
+      expect(subject.date_modified).to eq("2018-08-02T21:20:01Z")
       expect(subject.first_page).to eq("2832")
       expect(subject.last_page).to eq("2841")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"Ecology", "issn"=>"0012-9658")
@@ -220,7 +220,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.title).to eq("Life and death of proteins after protease cleavage: protein degradation by the N-end rule pathway")
       expect(subject.license).to eq([{"id"=>"http://doi.wiley.com/10.1002/tdm_license_1.1"}, {"id"=>"http://onlinelibrary.wiley.com/termsAndConditions"}])
       expect(subject.date_published).to eq("2018-05")
-      expect(subject.date_modified).to eq("2018-04-16T09:28:43Z")
+      expect(subject.date_modified).to eq("2018-08-07T05:52:14Z")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"New Phytologist", "issn"=>"0028646X")
       expect(subject.container_title).to eq("New Phytologist")
       expect(subject.service_provider).to eq("Crossref")

data/spec/readers/datacite_reader_spec.rb

@@ -198,8 +198,8 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.valid?).to be true
       expect(subject.identifier).to eq("https://doi.org/10.2314/coscv1")
       expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.author.length).to eq(2)
-      expect(subject.author.first).to eq("type"=>"Person", "name"=>"Neumann, Janna", "givenName"=>"Janna", "familyName"=>"Neumann")
+      expect(subject.author.length).to eq(14)
+      expect(subject.author.first).to include("type"=>"Person", "name"=>"Lambert Heller", "givenName"=>"Lambert", "familyName"=>"Heller")
     end
 
     it "keywords with attributes" do
@@ -458,8 +458,8 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.valid?).to be true
       expect(subject.doi).to eq("10.23725/8na3-9s47")
       expect(subject.identifier).to eq("https://doi.org/10.23725/8na3-9s47")
-      expect(subject.alternate_identifier).to eq([{"name"=>"3b33f6b9338fccab0901b7d317577ea3", "type"=>"md5"}, {"name"=>"ark:/99999/fk41CrU4eszeLUDe", "type"=>"minid"}, {"name"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7", "type"=>"dataguid"}])
-      expect(subject.content_url).to eq(["s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram"])
+      expect(subject.alternate_identifier).to include({"name"=>"3b33f6b9338fccab0901b7d317577ea3", "type"=>"md5"}, {"name"=>"ark:/99999/fk41CrU4eszeLUDe", "type"=>"minid"}, {"name"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7", "type"=>"dataguid"})
+      expect(subject.content_url).to include("s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram")
     end
 
     it "empty subject" do
@@ -569,6 +569,14 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.errors).to eq("16:0: ERROR: Element '{http://datacite.org/schema/kernel-4}creatorName': This element is not expected. Expected is ( {http://datacite.org/schema/kernel-4}affiliation ).")
     end
 
+    it "empty funding references" do
+      input = fixture_path + "funding_reference.xml"
+      subject = Bolognese::Metadata.new(input: input, regenerate: false)
+      expect(subject.valid?).to be false
+      expect(subject.funding).to eq("name"=>"Agency for Science, Technology and Research (Singapore)", "type"=>"Organization")
+      expect(subject.errors.first).to eq("31:0: ERROR: Element '{http://datacite.org/schema/kernel-4}fundingReference': Missing child element(s). Expected is one of ( {http://datacite.org/schema/kernel-4}funderName, {http://datacite.org/schema/kernel-4}funderIdentifier, {http://datacite.org/schema/kernel-4}awardNumber, {http://datacite.org/schema/kernel-4}awardTitle ).")
+    end
+
     it "dissertation" do
       input = "10.3204/desy-2014-01645"
       subject = Bolognese::Metadata.new(input: input)
@@ -586,6 +594,19 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.service_provider).to eq("DataCite")
       expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
     end
+
+    it "DOI in with related id system" do
+      input = "https://doi.org/10.4121/uuid:3926db30-f712-4394-aebc-75976070e91f"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.identifier).to eq("https://doi.org/10.4121/uuid:3926db30-f712-4394-aebc-75976070e91f")
+      expect(subject.type).to eq("Dataset")
+      expect(subject.resource_type_general).to eq("Dataset")
+      expect(subject.title).to eq("BPI Challenge 2012")
+      expect(subject.date_published).to eq("2012")
+      expect(subject.publication_year).to eq(2012)
+      expect(subject.state).to eq("findable")
+    end
   end
 
   context "change datacite metadata" do

data/spec/utils_spec.rb

@@ -240,7 +240,7 @@ describe Bolognese::Metadata, vcr: true do
       identifier = "https://doi.org/10.23725/8na3-9s47"
       alternate_identifier = [{"type"=>"md5", "name"=>"3b33f6b9338fccab0901b7d317577ea3"}, {"type"=>"minid", "name"=>"ark:/99999/fk41CrU4eszeLUDe"}, {"type"=>"dataguid", "name"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"}]
       response = subject.to_schema_org_identifier(identifier, alternate_identifier: alternate_identifier, type: "Dataset")
-      expect(response).to eq(["https://doi.org/10.1101/097196",
+      expect(response).to eq([{"@type"=>"PropertyValue", "propertyID"=>"doi", "value"=>"https://doi.org/10.23725/8na3-9s47"},
         {"@type"=>"PropertyValue",
          "propertyID"=>"md5",
          "value"=>"3b33f6b9338fccab0901b7d317577ea3"},

data/spec/writers/bibtex_writer_spec.rb

@@ -146,7 +146,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(bibtex[:bibtex_type].to_s).to eq("misc")
       expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.1594/pangaea.721193")
       expect(bibtex[:doi]).to eq("10.1594/pangaea.721193")
-      expect(bibtex[:keywords]).to eq("GetInfo, Animalia, Bottles or small containers/Aquaria ( 20 L), Calcification/Dissolution, Coast and continental shelf, Development, Growth/Morphology, Laboratory experiment, Mollusca, Pelagos, Single species, Temperate, Zooplankton, Experimental treatment, Carbonate system computation flag, Temperature, water, Salinity, pH, Alkalinity, total, Carbon, inorganic, dissolved, Carbon dioxide, Bicarbonate ion, Carbonate ion, Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), Fugacity of carbon dioxide (water) at sea surface temperature (wet air), Aragonite saturation state, Calcite saturation state, Proportion, Crassostrea gigas, larvae length, Crassostrea gigas, larvae height, Crassostrea gigas, non mineralized, Crassostrea gigas, partially mineralized, Crassostrea gigas, fully mineralized, Calculated using seacarb after Nisumaa et al. (2010), Refractometer (Atago 100-S), pH meter (Mettler Toledo), pH meter (PHM290, Radiometer), Measured, European Project on Ocean Acidification (EPOCA), European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS), Ocean Acidification International Coordination Centre (OA-ICC)")
+      expect(bibtex[:keywords]).to eq("GetInfo, Animalia, Bottles or small containers/Aquaria ( 20 L), Calcification/Dissolution, Coast and continental shelf, Crassostrea gigas, Development, Growth/Morphology, Laboratory experiment, Mollusca, Pelagos, Single species, Temperate, Zooplankton, Experimental treatment, Carbonate system computation flag, Temperature, water, Salinity, pH, Alkalinity, total, Carbon, inorganic, dissolved, Carbon dioxide, Bicarbonate ion, Carbonate ion, Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), Fugacity of carbon dioxide (water) at sea surface temperature (wet air), Aragonite saturation state, Calcite saturation state, Proportion, Crassostrea gigas, larvae length, Crassostrea gigas, larvae height, Crassostrea gigas, non mineralized, Crassostrea gigas, partially mineralized, Crassostrea gigas, fully mineralized, Calculated using seacarb after Nisumaa et al. (2010), Refractometer (Atago 100-S), pH meter (Mettler Toledo), pH meter (PHM290, Radiometer), Measured, European Project on Ocean Acidification (EPOCA), European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS), Ocean Acidification International Coordination Centre (OA-ICC)")
       expect(bibtex[:year]).to eq("2007")
     end
 

data/spec/writers/citeproc_writer_spec.rb

@@ -185,7 +185,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(json["type"]).to eq("dataset")
       expect(json["id"]).to eq("https://doi.org/10.1594/pangaea.721193")
       expect(json["DOI"]).to eq("10.1594/pangaea.721193")
-      expect(json["categories"]).to eq(["GetInfo", "Animalia", "Bottles or small containers/Aquaria ( 20 L)", "Calcification/Dissolution", "Coast and continental shelf", "Development", "Growth/Morphology", "Laboratory experiment", "Mollusca", "Pelagos", "Single species", "Temperate", "Zooplankton", "Experimental treatment", "Carbonate system computation flag", "Temperature, water", "Salinity", "pH", "Alkalinity, total", "Carbon, inorganic, dissolved", "Carbon dioxide", "Bicarbonate ion", "Carbonate ion", "Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)", "Fugacity of carbon dioxide (water) at sea surface temperature (wet air)", "Aragonite saturation state", "Calcite saturation state", "Proportion", "Crassostrea gigas, larvae length", "Crassostrea gigas, larvae height", "Crassostrea gigas, non mineralized", "Crassostrea gigas, partially mineralized", "Crassostrea gigas, fully mineralized", "Calculated using seacarb after Nisumaa et al. (2010)", "Refractometer (Atago 100-S)", "pH meter (Mettler Toledo)", "pH meter (PHM290, Radiometer)", "Measured", "European Project on Ocean Acidification (EPOCA)", "European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS)", "Ocean Acidification International Coordination Centre (OA-ICC)"])
+      expect(json["categories"]).to include("GetInfo", "Animalia", "Bottles or small containers/Aquaria ( 20 L)", "Calcification/Dissolution", "Coast and continental shelf", "Development", "Growth/Morphology", "Laboratory experiment", "Mollusca", "Pelagos", "Single species", "Temperate", "Zooplankton", "Experimental treatment", "Carbonate system computation flag", "Temperature, water", "Salinity", "pH", "Alkalinity, total", "Carbon, inorganic, dissolved", "Carbon dioxide", "Bicarbonate ion", "Carbonate ion", "Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)", "Fugacity of carbon dioxide (water) at sea surface temperature (wet air)", "Aragonite saturation state", "Calcite saturation state", "Proportion", "Crassostrea gigas, larvae length", "Crassostrea gigas, larvae height", "Crassostrea gigas, non mineralized", "Crassostrea gigas, partially mineralized", "Crassostrea gigas, fully mineralized", "Calculated using seacarb after Nisumaa et al. (2010)", "Refractometer (Atago 100-S)", "pH meter (Mettler Toledo)", "pH meter (PHM290, Radiometer)", "Measured", "European Project on Ocean Acidification (EPOCA)", "European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS)", "Ocean Acidification International Coordination Centre (OA-ICC)")
     end
   end
 end

data/spec/writers/crosscite_writer_spec.rb

@@ -74,8 +74,8 @@ describe Bolognese::Metadata, vcr: true do
       expect(crosscite.fetch("author").first).to eq("type"=>"Person", "familyName" => "Ollomo", "givenName" => "Benjamin", "name" => "Benjamin Ollomo")
       expect(crosscite.fetch("date_registered")).to eq("2011-02-01T17:32:02Z")
       expect(crosscite.fetch("date_updated")).to eq("2018-03-30T21:47:26Z")
-      expect(crosscite.fetch("provider_id")).to eq("CDL")
-      expect(crosscite.fetch("client_id")).to eq("CDL.DRYAD")
+      expect(crosscite.fetch("provider_id")).to eq("DRYAD")
+      expect(crosscite.fetch("client_id")).to eq("DRYAD.DRYAD")
     end
 
     it "maremma" do

data/spec/writers/ris_writer_spec.rb

@@ -176,18 +176,18 @@ describe Bolognese::Metadata, vcr: true do
       input = "https://doi.org/10.1594/pangaea.721193"
       subject = Bolognese::Metadata.new(input: input, from: "datacite")
       ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - DATA")
-      expect(ris[1]).to eq("T1  - Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
-      expect(ris[2]).to eq("AU  - Kurihara, Haruko")
-      expect(ris[5]).to eq("DO  - 10.1594/pangaea.721193")
-      expect(ris[6]).to eq("UR  - https://doi.pangaea.de/10.1594/PANGAEA.721193")
-      expect(ris[8]).to eq("KW  - GetInfo")
-      expect(ris[9]).to eq("KW  - Animalia")
-      expect(ris[10]).to eq("KW  - Bottles or small containers/Aquaria ( 20 L)")
-      expect(ris[49]).to eq("PY  - 2007")
-      expect(ris[50]).to eq("PB  - PANGAEA - Data Publisher for Earth & Environmental Science")
-      expect(ris[51]).to eq("LA  - eng")
-      expect(ris[52]).to eq("ER  - ")
+      expect(ris.first).to eq("TY  - DATA")
+      expect(ris).to include("T1  - Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
+      expect(ris).to include("AU  - Kurihara, Haruko")
+      expect(ris).to include("DO  - 10.1594/pangaea.721193")
+      expect(ris).to include("UR  - https://doi.pangaea.de/10.1594/PANGAEA.721193")
+      expect(ris).to include("KW  - GetInfo")
+      expect(ris).to include("KW  - Animalia")
+      expect(ris).to include("KW  - Bottles or small containers/Aquaria ( 20 L)")
+      expect(ris).to include("PY  - 2007")
+      expect(ris).to include("PB  - PANGAEA - Data Publisher for Earth & Environmental Science")
+      expect(ris).to include("LA  - eng")
+      expect(ris.last).to eq("ER  - ")
     end
   end
 end

data/spec/writers/schema_org_writer_spec.rb

@@ -120,7 +120,7 @@ describe Bolognese::Metadata, vcr: true do
       json = JSON.parse(subject.schema_org)
       expect(json["@id"]).to eq("https://doi.org/10.1594/pangaea.721193")
       expect(json["name"]).to eq("Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
-      expect(json["keywords"]).to eq("GetInfo, Animalia, Bottles or small containers/Aquaria ( 20 L), Calcification/Dissolution, Coast and continental shelf, Development, Growth/Morphology, Laboratory experiment, Mollusca, Pelagos, Single species, Temperate, Zooplankton, Experimental treatment, Carbonate system computation flag, Temperature, water, Salinity, pH, Alkalinity, total, Carbon, inorganic, dissolved, Carbon dioxide, Bicarbonate ion, Carbonate ion, Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), Fugacity of carbon dioxide (water) at sea surface temperature (wet air), Aragonite saturation state, Calcite saturation state, Proportion, Crassostrea gigas, larvae length, Crassostrea gigas, larvae height, Crassostrea gigas, non mineralized, Crassostrea gigas, partially mineralized, Crassostrea gigas, fully mineralized, Calculated using seacarb after Nisumaa et al. (2010), Refractometer (Atago 100-S), pH meter (Mettler Toledo), pH meter (PHM290, Radiometer), Measured, European Project on Ocean Acidification (EPOCA), European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS), Ocean Acidification International Coordination Centre (OA-ICC)")
+      expect(json["keywords"]).to eq("GetInfo, Animalia, Bottles or small containers/Aquaria ( 20 L), Calcification/Dissolution, Coast and continental shelf, Crassostrea gigas, Development, Growth/Morphology, Laboratory experiment, Mollusca, Pelagos, Single species, Temperate, Zooplankton, Experimental treatment, Carbonate system computation flag, Temperature, water, Salinity, pH, Alkalinity, total, Carbon, inorganic, dissolved, Carbon dioxide, Bicarbonate ion, Carbonate ion, Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), Fugacity of carbon dioxide (water) at sea surface temperature (wet air), Aragonite saturation state, Calcite saturation state, Proportion, Crassostrea gigas, larvae length, Crassostrea gigas, larvae height, Crassostrea gigas, non mineralized, Crassostrea gigas, partially mineralized, Crassostrea gigas, fully mineralized, Calculated using seacarb after Nisumaa et al. (2010), Refractometer (Atago 100-S), pH meter (Mettler Toledo), pH meter (PHM290, Radiometer), Measured, European Project on Ocean Acidification (EPOCA), European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS), Ocean Acidification International Coordination Centre (OA-ICC)")
     end
 
     it "author is organization" do
@@ -161,7 +161,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(json["name"]).to eq("Covariates used in eQTL analysis. Includes genotyping principal components and PEER factors")
       expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
       expect(json["includedInDataCatalog"]).to eq("@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["identifier"]).to eq(["https://doi.org/10.25491/8kmc-g314", {"@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"c7c89fe7366d50cd75448aa603c9de58"}])
+      expect(json["identifier"]).to eq([{"@type"=>"PropertyValue", "propertyID"=>"doi", "value"=>"https://doi.org/10.25491/8kmc-g314"},{"@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"c7c89fe7366d50cd75448aa603c9de58"}])
       expect(json["contentUrl"]).to eq(["https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_covariates.tar.gz"])
     end
 
@@ -172,19 +172,23 @@ describe Bolognese::Metadata, vcr: true do
       expect(json["@id"]).to eq("https://doi.org/10.23725/8na3-9s47")
       expect(json["@type"]).to eq("Dataset")
       expect(json["name"]).to eq("NWD165827.recab.cram")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"TOPMed IRC")
+      expect(json["author"]).to eq("name"=>"TOPMed")
       expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["identifier"]).to eq(["https://doi.org/10.23725/8na3-9s47",
-        {"@type"=>"PropertyValue",
-         "propertyID"=>"md5",
-         "value"=>"3b33f6b9338fccab0901b7d317577ea3"},
-        {"@type"=>"PropertyValue",
-         "propertyID"=>"minid",
-         "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
-        {"@type"=>"PropertyValue",
+      expect(json["identifier"]).to eq(
+        [{"@type"=>"PropertyValue",
+          "propertyID"=>"doi",
+          "value"=>"https://doi.org/10.23725/8na3-9s47"},
+         {"@type"=>"PropertyValue",
+          "propertyID"=>"minid",
+          "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
+         {"@type"=>"PropertyValue",
           "propertyID"=>"dataguid",
-          "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"}])
-      expect(json["contentUrl"]).to eq(["s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram"])
+          "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"},
+         {"@type"=>"PropertyValue",
+          "propertyID"=>"md5",
+          "value"=>"3b33f6b9338fccab0901b7d317577ea3"}]
+      )
+      expect(json["contentUrl"]).to include("s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram")
     end
 
     it "from schema_org gtex" do
@@ -193,7 +197,7 @@ describe Bolognese::Metadata, vcr: true do
       json = JSON.parse(subject.schema_org)
       expect(json["@id"]).to eq("https://doi.org/10.25491/d50j-3083")
       expect(json["@type"]).to eq("Dataset")
-      expect(json["identifier"]).to eq(["https://doi.org/10.25491/d50j-3083", {"@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"687610993"}])
+      expect(json["identifier"]).to eq([{"@type"=>"PropertyValue", "propertyID"=>"doi", "value"=>"https://doi.org/10.25491/d50j-3083"}, {"@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"687610993"}])
       expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.25491/d50j-3083")
       expect(json["additionalType"]).to eq("Gene expression matrices")
       expect(json["name"]).to eq("Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery")
@@ -235,14 +239,17 @@ describe Bolognese::Metadata, vcr: true do
       json = JSON.parse(subject.schema_org)
       expect(json["@id"]).to eq("https://doi.org/10.23725/8na3-9s47")
       expect(json["@type"]).to eq("Dataset")
-      expect(json["identifier"]).to eq(["https://doi.org/10.23725/8na3-9s47",
-        {"@type"=>"PropertyValue",
-         "propertyID"=>"md5",
-         "value"=>"3b33f6b9338fccab0901b7d317577ea3"},
-        {"@type"=>"PropertyValue",
-         "propertyID"=>"minid",
-         "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
-        {"@type"=>"PropertyValue",
+      expect(json["identifier"]).to eq(
+        [{"@type"=>"PropertyValue",
+          "propertyID"=>"doi",
+          "value"=>"https://doi.org/10.23725/8na3-9s47"},
+         {"@type"=>"PropertyValue",
+          "propertyID"=>"md5",
+          "value"=>"3b33f6b9338fccab0901b7d317577ea3"},
+         {"@type"=>"PropertyValue",
+          "propertyID"=>"minid",
+          "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
+         {"@type"=>"PropertyValue",
           "propertyID"=>"dataguid",
           "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"}])
       expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.23725/8na3-9s47")

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bolognese
 version: !ruby/object:Gem::Version
-  version: 0.13.4
+  version: 0.13.6
 platform: ruby
 authors:
 - Martin Fenner
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-08-31 00:00:00.000000000 Z
+date: 2018-09-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: maremma
@@ -604,6 +604,7 @@ files:
 - spec/fixtures/datacite_software.json
 - spec/fixtures/datacite_software_missing_comma.json
 - spec/fixtures/datacite_software_overlapping_keys.json
+- spec/fixtures/funding_reference.xml
 - spec/fixtures/gtex.xml
 - spec/fixtures/maremma/codemeta.json
 - spec/fixtures/ns0.xml
@@ -703,6 +704,7 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/posted_content.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/BlogPosting.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/DOI_in_test_system.yml
+- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/DOI_in_with_related_id_system.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/DOI_not_found.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Dataset.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Funding.yml
@@ -739,7 +741,6 @@ files:
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_name_identifiers/has_multiple_name_identifier.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_name_identifiers/has_no_ORCID.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_familyName.yml
-- spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_multiple_names_in_display-order.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_Thai.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_display-order.yml
 - spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_multiple_names_in_display-order.yml

@@ -1,42 +0,0 @@
----
-http_interactions:
-- request:
-    method: get
-    uri: https://search.datacite.org/api?defType=edismax&fl=doi,url,xml,state,allocator_symbol,datacentre_symbol,media,minted,updated&q=10.6084/m9.figshare.3479141%2520&wt=json
-    body:
-      encoding: US-ASCII
-      string: ''
-    headers:
-      User-Agent:
-      - Maremma 4.0.5 - https://github.com/datacite/maremma
-      Accept:
-      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
-  response:
-    status:
-      code: 200
-      message: OK
-    headers:
-      Date:
-      - Mon, 21 May 2018 15:01:12 GMT
-      Content-Type:
-      - application/json;charset=UTF-8
-      Connection:
-      - keep-alive
-      Server:
-      - nginx/1.10.3 (Ubuntu)
-      Access-Control-Allow-Origin:
-      - "*"
-      Access-Control-Allow-Methods:
-      - GET, POST, PUT, DELETE, OPTIONS
-      Access-Control-Allow-Headers:
-      - DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range,Authorization
-      Access-Control-Expose-Headers:
-      - DNT,X-CustomHeader,Keep-Alive,User-Agent,X-Requested-With,If-Modified-Since,Cache-Control,Content-Type,Content-Range,Range,Authorization
-    body:
-      encoding: ASCII-8BIT
-      string: '{"responseHeader":{"status":0,"QTime":11},"response":{"numFound":0,"start":0,"docs":[]}}
-
-'
-    http_version: 
-  recorded_at: Mon, 21 May 2018 15:01:12 GMT
-recorded_with: VCR 3.0.3