blosum 0.1.0
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- checksums.yaml +7 -0
- data/.gitignore +18 -0
- data/.rspec +3 -0
- data/.travis.yml +7 -0
- data/CODE_OF_CONDUCT.md +74 -0
- data/Gemfile +4 -0
- data/Gemfile.lock +35 -0
- data/LICENSE.txt +21 -0
- data/README.md +37 -0
- data/Rakefile +6 -0
- data/assets/blosum45.txt +29 -0
- data/assets/blosum50.txt +29 -0
- data/assets/blosum62.txt +29 -0
- data/assets/blosum80.txt +29 -0
- data/assets/blosum90.txt +29 -0
- data/bin/console +14 -0
- data/bin/setup +8 -0
- data/blosum.gemspec +32 -0
- data/exe/parse_blosum_file +51 -0
- data/lib/blosum.rb +12 -0
- data/lib/blosum/blosum45.rb +679 -0
- data/lib/blosum/blosum50.rb +679 -0
- data/lib/blosum/blosum62.rb +679 -0
- data/lib/blosum/blosum80.rb +679 -0
- data/lib/blosum/blosum90.rb +679 -0
- data/lib/blosum/version.rb +3 -0
- metadata +114 -0
metadata
ADDED
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@@ -0,0 +1,114 @@
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--- !ruby/object:Gem::Specification
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name: blosum
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version: !ruby/object:Gem::Version
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version: 0.1.0
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platform: ruby
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authors:
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- Ryan Moore
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8
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autorequire:
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9
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bindir: exe
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10
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cert_chain: []
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11
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date: 2019-10-15 00:00:00.000000000 Z
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12
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dependencies:
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13
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- !ruby/object:Gem::Dependency
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name: bundler
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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- !ruby/object:Gem::Version
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version: '2.0'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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25
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- !ruby/object:Gem::Version
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26
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version: '2.0'
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27
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- !ruby/object:Gem::Dependency
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28
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name: rake
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29
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requirement: !ruby/object:Gem::Requirement
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requirements:
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31
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- - "~>"
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32
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- !ruby/object:Gem::Version
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33
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version: '10.0'
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34
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type: :development
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35
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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37
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requirements:
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38
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- - "~>"
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39
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- !ruby/object:Gem::Version
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40
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version: '10.0'
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- !ruby/object:Gem::Dependency
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42
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name: rspec
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43
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requirement: !ruby/object:Gem::Requirement
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44
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requirements:
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45
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- - "~>"
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46
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- !ruby/object:Gem::Version
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47
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version: '3.0'
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48
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type: :development
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49
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prerelease: false
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50
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version_requirements: !ruby/object:Gem::Requirement
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51
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requirements:
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52
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- - "~>"
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53
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- !ruby/object:Gem::Version
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54
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version: '3.0'
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55
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description: Common substitution matrices for sequence alignment.
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56
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email:
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57
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- moorer@udel.edu
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58
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executables:
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59
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- parse_blosum_file
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60
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extensions: []
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61
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extra_rdoc_files: []
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62
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files:
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63
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- ".gitignore"
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64
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- ".rspec"
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65
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- ".travis.yml"
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66
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- CODE_OF_CONDUCT.md
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67
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- Gemfile
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68
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- Gemfile.lock
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69
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- LICENSE.txt
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70
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- README.md
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71
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- Rakefile
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72
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- assets/blosum45.txt
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73
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- assets/blosum50.txt
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74
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- assets/blosum62.txt
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75
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- assets/blosum80.txt
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76
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- assets/blosum90.txt
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77
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- bin/console
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78
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- bin/setup
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79
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- blosum.gemspec
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80
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- exe/parse_blosum_file
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81
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- lib/blosum.rb
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82
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- lib/blosum/blosum45.rb
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83
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- lib/blosum/blosum50.rb
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84
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- lib/blosum/blosum62.rb
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85
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- lib/blosum/blosum80.rb
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86
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- lib/blosum/blosum90.rb
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87
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- lib/blosum/version.rb
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88
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homepage: https://github.com/mooreryan/blosum_ruby
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89
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licenses:
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90
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- MIT
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91
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metadata:
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92
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homepage_uri: https://github.com/mooreryan/blosum_ruby
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93
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source_code_uri: https://github.com/mooreryan/blosum_ruby
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94
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changelog_uri: https://github.com/mooreryan/blosum_ruby
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95
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post_install_message:
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96
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rdoc_options: []
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97
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require_paths:
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98
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- lib
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99
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required_ruby_version: !ruby/object:Gem::Requirement
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100
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requirements:
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101
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- - ">="
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102
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- !ruby/object:Gem::Version
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103
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version: '0'
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104
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required_rubygems_version: !ruby/object:Gem::Requirement
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105
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requirements:
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106
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- - ">="
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107
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- !ruby/object:Gem::Version
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108
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version: '0'
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109
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requirements: []
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110
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rubygems_version: 3.0.6
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111
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signing_key:
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112
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specification_version: 4
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113
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summary: Common substitution matrices for sequence alignment.
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114
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test_files: []
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