biovision 0.1.210414.0 → 0.12.211128.0

data/config/routes.rb

@@ -13,6 +13,14 @@ Rails.application.routes.draw do
     post :toggle, on: :member, defaults: { format: :json }
   end
 
+  concern :search do
+    get :search, on: :collection
+  end
+
+  concern :stories do
+    post 'stories/:slug' => :story, on: :collection, as: :story
+  end
+
   # Handling errors
   match '/400' => 'errors#bad_request', via: :all
   match '/401' => 'errors#unauthorized', via: :all
@@ -51,6 +59,8 @@ Rails.application.routes.draw do
   namespace :admin do
     get '/' => 'index#index'
 
+    resources :biovision_components, only: :index, concerns: %i[priority toggle]
+
     scope :components, controller: :components do
       get '/' => :index, as: :components
       scope ':slug' do
@@ -58,8 +68,6 @@ Rails.application.routes.draw do
         get 'settings' => :settings, as: :component_settings
         patch 'settings' => :update_settings, as: nil
         patch 'parameters' => :update_parameter, as: :component_parameters
-        get 'privileges' => :privileges, as: :component_privileges
-        patch 'privileges' => :update_privileges, as: nil
         put 'administrators/:user_id' => :add_administrator, as: :component_administrators
         delete 'administrators/:user_id' => :remove_administrator, as: nil
         get 'images' => :images, as: :component_images
@@ -72,7 +80,7 @@ Rails.application.routes.draw do
     resources :agents, :ip_addresses, only: :index
 
     # Content component
-    resources :dynamic_pages, :dynamic_blocks, concerns: %i[check toggle]
+    resources :dynamic_pages, :dynamic_blocks, concerns: %i[check search toggle]
     resources :navigation_groups, concerns: :check do
       member do
         put 'dynamic_pages/:page_id' => :add_page, as: :dynamic_page
@@ -81,7 +89,16 @@ Rails.application.routes.draw do
       end
     end
 
-    resources :users, concerns: %i[check toggle]
+    # Users component
+    resources :users, concerns: %i[check search toggle] do
+      member do
+        get 'roles'
+        put 'roles/:role_id' => :add_role, as: :role
+        delete 'roles/:role_id' => :remove_role
+        post 'authenticate'
+      end
+    end
+    resources :tokens, concerns: %i[toggle]
   end
 
   namespace :my do
@@ -89,7 +106,21 @@ Rails.application.routes.draw do
 
     resource :profile, except: :destroy, concerns: :check
     resource :confirmation, :recovery, only: %i[show create update]
+
+    scope :components, controller: :components do
+      get '/' => :index, as: :components
+      scope ':slug' do
+        get '/' => :show, as: :component
+        get 'images' => :images, as: :component_images
+        post 'images' => :create_image, as: nil
+        post 'ckeditor'
+      end
+    end
+    get 'dashboard' => 'components#index'
+    get 'dashboard/:slug' => 'components#show', as: :component_dashboard
   end
 
+  post 'oembed' => 'oembed#code'
+
   get ':slug' => 'fallback#show', constraints: { slug: /.+/ }
 end

data/db/migrate/20191228000000_create_biovision_components.rb

@@ -7,6 +7,8 @@ class CreateBiovisionComponents < ActiveRecord::Migration[6.0]
     create_metrics unless Metric.table_exists?
     create_metric_values unless MetricValue.table_exists?
     create_languages unless Language.table_exists?
+
+    Biovision::Components::BaseComponent.create
   end
 
   def down

data/db/migrate/20200224000000_create_track_component.rb

@@ -1,21 +1,17 @@
 # frozen_string_literal: true
 
 # Create entry and tables for track component
-class CreateTrackComponent < ActiveRecord::Migration[6.0]
-  def up
-    BiovisionComponent.create(slug: Biovision::Components::TrackComponent.slug)
+class CreateTrackComponent < ActiveRecord::Migration[6.1]
+  include Biovision::Migrations::ComponentMigration
 
-    create_browsers unless Browser.table_exists?
-    create_agents unless Agent.table_exists?
-    create_ip_addresses unless IpAddress.table_exists?
-  end
+  def up
+    component.create
+    component.dependent_models.each do |model|
+      next if model.table_exists?
 
-  def down
-    Biovision::Components::TrackComponent.dependent_models.each do |model|
-      drop_table model.table_name if model.table_exists?
+      message = "create_#{model.table_name}".to_sym
+      send(message) if respond_to?(message, true)
     end
-
-    BiovisionComponent[Biovision::Components::TrackComponent]&.destroy
   end
 
   private

data/db/migrate/20200224000010_create_users_component.rb

@@ -1,50 +1,21 @@
 # frozen_string_literal: true
 
 # Create tables for Users component
-class CreateUsersComponent < ActiveRecord::Migration[6.0]
+class CreateUsersComponent < ActiveRecord::Migration[6.1]
+  include Biovision::Migrations::ComponentMigration
+
   def up
-    create_component
-    create_users unless User.table_exists?
-    create_tokens unless Token.table_exists?
-    create_login_attempts unless LoginAttempt.table_exists?
-    create_user_languages unless UserLanguage.table_exists?
-    create_component_links unless BiovisionComponentUser.table_exists?
-    create_codes unless Code.table_exists?
-    create_notifications unless Notification.table_exists?
-  end
+    component.create
+    component.dependent_models.each do |model|
+      next if model.table_exists?
 
-  def down
-    Biovision::Components::UsersComponent.dependent_models.each do |model|
-      drop_table model.table_name if model.table_exists?
+      message = "create_#{model.table_name}".to_sym
+      send(message) if respond_to?(message, true)
     end
-
-    BiovisionComponent[Biovision::Components::UsersComponent]&.destroy
   end
 
   private
 
-  def create_component
-    slug = Biovision::Components::UsersComponent.slug
-
-    settings = {
-      registration_open: true,
-      email_as_login: false,
-      phone_as_login: false,
-      confirm_email: false,
-      require_email: false,
-      confirm_phone: false,
-      require_phone: false,
-      invite_only: false,
-      use_invites: false,
-      invite_count: 5,
-      bounce_count: 10,
-      bounce_timeout: 3,
-      use_phone: false
-    }
-
-    BiovisionComponent.create(slug: slug, settings: settings)
-  end
-
   def create_users
     create_table :users, comment: 'Users' do |t|
       t.uuid :uuid, null: false
@@ -117,18 +88,6 @@ class CreateUsersComponent < ActiveRecord::Migration[6.0]
     end
   end
 
-  def create_component_links
-    create_table :biovision_component_users, comment: 'Privileges and settings for users in components' do |t|
-      t.references :biovision_component, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
-      t.references :user, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
-      t.boolean :administrator, default: false, null: false
-      t.timestamps
-      t.jsonb :data, default: {}, null: false
-    end
-
-    add_index :biovision_component_users, :data, using: :gin
-  end
-
   def create_codes
     create_table :codes, comment: 'Codes for different purposes' do |t|
       t.references :biovision_component, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }

data/db/migrate/20200404000000_create_simple_images.rb

@@ -30,6 +30,7 @@ class CreateSimpleImages < ActiveRecord::Migration[6.0]
       t.string :caption
       t.string :source_name
       t.string :source_link
+      t.string :checksum, index: true
       t.jsonb :data, default: {}, null: false
     end
 

data/db/migrate/20210405000000_create_acl.rb

@@ -8,6 +8,8 @@ class CreateAcl < ActiveRecord::Migration[6.1]
     create_role_groups unless RoleGroup.table_exists?
     create_user_groups unless UserGroup.table_exists?
     create_user_roles unless UserRole.table_exists?
+
+    create_component_roles
   end
 
   def down
@@ -67,8 +69,20 @@ class CreateAcl < ActiveRecord::Migration[6.1]
     create_table :user_roles, comment: 'Users with (and without) ACL roles' do |t|
       t.references :user, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
       t.references :role, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
-      t.boolean :inclusive, default: true, null: false
       t.timestamps
     end
   end
+
+  def create_component_roles
+    BiovisionComponent.pluck(:slug).each do |component|
+      next if component == Biovision::Components::BaseComponent.slug
+
+      Biovision::Components::BaseComponent.handler(component).create_roles
+    end
+
+    base_component = BiovisionComponent[Biovision::Components::BaseComponent]
+    %w[admin components.view].each do |role|
+      Role.create(biovision_component: base_component, slug: role)
+    end
+  end
 end

data/db/migrate/{20200529000000_create_content_component.rb → 20210421000000_create_content_component.rb}

@@ -1,23 +1,8 @@
 # frozen_string_literal: true
 
 # Create Content component and tables
-class CreateContentComponent < ActiveRecord::Migration[6.0]
-  def up
-    BiovisionComponent.create(slug: Biovision::Components::ContentComponent.slug)
-
-    create_dynamic_pages unless DynamicPage.table_exists?
-    create_navigation_groups unless NavigationGroup.table_exists?
-    create_pages_in_groups unless NavigationGroupPage.table_exists?
-    create_dynamic_blocks unless DynamicBlock.table_exists?
-  end
-
-  def down
-    Biovision::Components::ContentComponent.dependent_models.each do |model|
-      drop_table model.table_name if model.table_exists?
-    end
-
-    BiovisionComponent[Biovision::Components::ContentComponent]&.destroy
-  end
+class CreateContentComponent < ActiveRecord::Migration[6.1]
+  include Biovision::Migrations::ComponentMigration
 
   private
 
@@ -50,7 +35,7 @@ class CreateContentComponent < ActiveRecord::Migration[6.0]
     add_index :dynamic_pages, :data, using: :gin
   end
 
-  def create_pages_in_groups
+  def create_navigation_group_pages
     create_table :navigation_group_pages, comment: 'Dynamic pages in navigation groups' do |t|
       t.references :navigation_group, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
       t.references :dynamic_page, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
@@ -71,4 +56,25 @@ class CreateContentComponent < ActiveRecord::Migration[6.0]
     add_index :dynamic_blocks, :slug, unique: true
     add_index :dynamic_blocks, :data, using: :gin
   end
+
+  def create_oembed_receivers
+    create_table :oembed_receivers, comment: 'Receivers for OEmbed content' do |t|
+      t.string :slug, null: false, index: true
+    end
+  end
+
+  def create_oembed_domains
+    create_table :oembed_domains, comment: 'Supported domains for OEmbed' do |t|
+      t.references :oembed_receiver, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.string :name, null: false, index: true
+    end
+  end
+
+  def create_oembed_links
+    create_table :oembed_links, comment: 'Embedded links' do |t|
+      t.string :url, null: false
+      t.text :code
+      t.timestamps
+    end
+  end
 end

data/db/migrate/{20210401000000_create_contact_component.rb → 20210421000010_create_contact_component.rb}

@@ -2,31 +2,10 @@
 
 # Create tables for contact component
 class CreateContactComponent < ActiveRecord::Migration[6.1]
-  def up
-    create_component
-    create_feedback_messages unless FeedbackMessage.table_exists?
-    create_feedback_responses unless FeedbackResponse.table_exists?
-    create_contact_types unless ContactType.table_exists?
-    create_contact_methods unless ContactMethod.table_exists?
-  end
-
-  def down
-    Biovision::Components::ContactComponent.dependent_models.each do |model|
-      drop_table model.table_name if model.table_exists?
-    end
-
-    BiovisionComponent[Biovision::Components::ContactComponent]&.destroy
-  end
+  include Biovision::Migrations::ComponentMigration
 
   private
 
-  def create_component
-    settings = { feedback_email: '' }
-    slug = Biovision::Components::ContactComponent.slug
-
-    BiovisionComponent.create(slug: slug, settings: settings)
-  end
-
   def create_feedback_messages
     create_table :feedback_messages, comment: 'Feedback messages from visitors' do |t|
       t.uuid :uuid, null: false

data/db/migrate/20210616000000_create_uploaded_files.rb

@@ -0,0 +1,52 @@
+# frozen_string_literal: true
+
+# Create tables for storing uploaded files
+class CreateUploadedFiles < ActiveRecord::Migration[6.1]
+  def up
+    create_uploaded_files unless UploadedFile.table_exists?
+    create_uploaded_file_tags unless UploadedFileTag.table_exists?
+    create_uploaded_file_tag_files unless UploadedFileTagFile.table_exists?
+  end
+
+  def down
+    [UploadedFileTagFile, UploadedFileTag, UploadedFile].each do |model|
+      drop_table model.table_name if model.table_exists?
+    end
+  end
+
+  private
+
+  def create_uploaded_files
+    create_table :uploaded_files, comment: 'Uploaded files' do |t|
+      t.uuid :uuid, null: false
+      t.references :biovision_component, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+      t.references :user, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.references :agent, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.references :ip_address, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.integer :object_count, default: 0, null: false
+      t.timestamps
+      t.string :attachment
+      t.string :description
+      t.string :checksum, index: true
+      t.jsonb :data, default: {}, null: false
+    end
+
+    add_index :uploaded_files, :uuid, unique: true
+    add_index :uploaded_files, :data, using: :gin
+  end
+
+  def create_uploaded_file_tags
+    create_table :uploaded_file_tags, comment: 'Tags for uploaded files' do |t|
+      t.string :name, null: false, index: true
+      t.integer :uploaded_files_count, default: 0, null: false
+      t.timestamps
+    end
+  end
+
+  def create_uploaded_file_tag_files
+    create_table :uploaded_file_tag_files, comment: 'Links between uploaded files and tags' do |t|
+      t.references :uploaded_file_tag, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+      t.references :uploaded_file, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+    end
+  end
+end

data/db/migrate/amends/20210816060606_create_oembed_receivers.rb

@@ -0,0 +1,21 @@
+# frozen_string_literal: true
+
+# Create tables for OEmbed
+class CreateOembedReceivers < ActiveRecord::Migration[6.1]
+  def change
+    # create_table :oembed_receivers, comment: 'Receivers for OEmbed content' do |t|
+    #   t.string :slug, null: false, index: true
+    # end
+    #
+    # create_table :oembed_domains, comment: 'Supported domains for OEmbed' do |t|
+    #   t.references :oembed_receiver, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+    #   t.string :name, null: false, index: true
+    # end
+    #
+    # create_table :oembed_links, comment: 'Embedded links' do |t|
+    #   t.string :url, null: false
+    #   t.text :code
+    #   t.timestamps
+    # end
+  end
+end

data/db/migrate/amends/20210907070707_add_checksum_to_simple_images.rb

@@ -0,0 +1,13 @@
+# frozen_string_literal: true
+
+# Add checksum field to simple images
+class AddChecksumToSimpleImages < ActiveRecord::Migration[6.1]
+  def up
+    # add_column :simple_images, :checksum, :string, index: true
+    # SimpleImage.order(:id).each(&:save)
+  end
+
+  def down
+    # remove_column :simple_images, :checksum
+  end
+end

data/lib/biovision/base_methods.rb

@@ -11,7 +11,7 @@ module Biovision
       helper_method :component_handler
       helper_method :current_page, :param_from_request
       helper_method :current_user, :current_language
-      helper_method :content_component
+      helper_method :content_component, :users_component
     end
 
     # Get current page number from request
@@ -53,6 +53,13 @@ module Biovision
       @content_component ||= Biovision::Components::ContentComponent[current_user]
     end
 
+    # Get users component handler
+    #
+    # @return [Biovision::Components::UsersComponent]
+    def users_component
+      @users_component ||= Biovision::Components::UsersComponent[current_user]
+    end
+
     # @return [Agent]
     def agent
       @agent ||= Agent[request.user_agent || 'n/a']
@@ -116,13 +123,6 @@ module Biovision
       handle_http_error(:service_unavailable, message, view)
     end
 
-    # Restrict access for anonymous users
-    def restrict_anonymous_access
-      return unless current_user.nil?
-
-      handle_http_401(t('application.errors.restricted_access'))
-    end
-
     # Owner information for entity
     #
     # @param [TrueClass|FalseClass] track
@@ -144,26 +144,6 @@ module Biovision
       @remote_ip ||= (request.env['HTTP_X_REAL_IP'] || request.remote_ip)
     end
 
-    # @param [String] next_page
-    def form_processed_ok(next_page)
-      respond_to do |format|
-        format.js { render(js: "document.location.href = '#{next_page}'") }
-        format.json { render(json: { links: { next: next_page } }) }
-        format.html { redirect_to(next_page) }
-      end
-    end
-
-    # @param [Symbol|String] view_to_render
-    # @param [Array] errors
-    def form_processed_with_error(view_to_render, errors = [])
-      @errors = errors
-      respond_to do |format|
-        format.js { render('shared/forms/errors', status: :bad_request) }
-        format.json { render('shared/forms/errors', status: :bad_request) }
-        format.html { render(view_to_render, status: :bad_request) }
-      end
-    end
-
     def component_class
       Biovision::Components::BaseComponent
     end

data/lib/biovision/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Biovision
-  VERSION = '0.1.210414.0'
+  VERSION = '0.12.211128.0'
 end

data/lib/tasks/components.rake

@@ -0,0 +1,51 @@
+# frozen_string_literal: true
+
+namespace :components do
+  desc 'Reset role list for all components'
+  task reset_role_list: :environment do
+    BiovisionComponent.pluck(:slug).each do |component|
+      next if component == Biovision::Components::BaseComponent.slug
+
+      handler = Biovision::Components::BaseComponent.handler(component)
+      valid_roles = []
+      handler.role_tree.each do |prefix, postfixes|
+        postfixes.each do |postfix|
+          slug = prefix.blank? ? postfix : "#{prefix}.#{postfix}"
+          valid_roles << slug
+          Role.create(biovision_component: handler.component, slug: slug)
+        end
+      end
+
+      handler.component.roles.each do |role|
+        role.destroy unless valid_roles.include?(role.slug)
+      end
+    end
+
+    base_component = BiovisionComponent[Biovision::Components::BaseComponent]
+    base_roles = %w[admin components.view]
+    base_roles.each do |role|
+      Role.create(biovision_component: base_component, slug: role)
+    end
+    base_component.roles.each do |role|
+      role.destroy unless base_roles.include?(role.slug)
+    end
+  end
+
+  desc 'Export all data from each component'
+  task export_all: :environment do
+    helper = Biovision::Helpers::ExportHelper.new
+    [
+      Language, MetricValue, Metric, BiovisionComponent, SimpleImageTagImage,
+      SimpleImageTag, SimpleImage, UploadedFileTagFile, UploadedFileTag,
+      UploadedFile, UserRole, UserGroup, RoleGroup, Role, Group
+    ].each do |model|
+      helper.export_model(model)
+    end
+    BiovisionComponent.order(:id).pluck(:slug).each do |slug|
+      handler = Biovision::Components::BaseComponent.handler_class(slug)
+      handler.dependent_models.each do |model|
+        helper.export_model(model)
+      end
+    end
+  end
+end