biovision 0.0.200518.1 → 0.12.211124.0

data/db/migrate/20210616000000_create_uploaded_files.rb

@@ -0,0 +1,52 @@
+# frozen_string_literal: true
+
+# Create tables for storing uploaded files
+class CreateUploadedFiles < ActiveRecord::Migration[6.1]
+  def up
+    create_uploaded_files unless UploadedFile.table_exists?
+    create_uploaded_file_tags unless UploadedFileTag.table_exists?
+    create_uploaded_file_tag_files unless UploadedFileTagFile.table_exists?
+  end
+
+  def down
+    [UploadedFileTagFile, UploadedFileTag, UploadedFile].each do |model|
+      drop_table model.table_name if model.table_exists?
+    end
+  end
+
+  private
+
+  def create_uploaded_files
+    create_table :uploaded_files, comment: 'Uploaded files' do |t|
+      t.uuid :uuid, null: false
+      t.references :biovision_component, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+      t.references :user, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.references :agent, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.references :ip_address, foreign_key: { on_update: :cascade, on_delete: :nullify }
+      t.integer :object_count, default: 0, null: false
+      t.timestamps
+      t.string :attachment
+      t.string :description
+      t.string :checksum, index: true
+      t.jsonb :data, default: {}, null: false
+    end
+
+    add_index :uploaded_files, :uuid, unique: true
+    add_index :uploaded_files, :data, using: :gin
+  end
+
+  def create_uploaded_file_tags
+    create_table :uploaded_file_tags, comment: 'Tags for uploaded files' do |t|
+      t.string :name, null: false, index: true
+      t.integer :uploaded_files_count, default: 0, null: false
+      t.timestamps
+    end
+  end
+
+  def create_uploaded_file_tag_files
+    create_table :uploaded_file_tag_files, comment: 'Links between uploaded files and tags' do |t|
+      t.references :uploaded_file_tag, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+      t.references :uploaded_file, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+    end
+  end
+end

data/db/migrate/amends/20210816060606_create_oembed_receivers.rb

@@ -0,0 +1,21 @@
+# frozen_string_literal: true
+
+# Create tables for OEmbed
+class CreateOembedReceivers < ActiveRecord::Migration[6.1]
+  def change
+    # create_table :oembed_receivers, comment: 'Receivers for OEmbed content' do |t|
+    #   t.string :slug, null: false, index: true
+    # end
+    #
+    # create_table :oembed_domains, comment: 'Supported domains for OEmbed' do |t|
+    #   t.references :oembed_receiver, null: false, foreign_key: { on_update: :cascade, on_delete: :cascade }
+    #   t.string :name, null: false, index: true
+    # end
+    #
+    # create_table :oembed_links, comment: 'Embedded links' do |t|
+    #   t.string :url, null: false
+    #   t.text :code
+    #   t.timestamps
+    # end
+  end
+end

data/db/migrate/amends/20210907070707_add_checksum_to_simple_images.rb

@@ -0,0 +1,13 @@
+# frozen_string_literal: true
+
+# Add checksum field to simple images
+class AddChecksumToSimpleImages < ActiveRecord::Migration[6.1]
+  def up
+    # add_column :simple_images, :checksum, :string, index: true
+    # SimpleImage.order(:id).each(&:save)
+  end
+
+  def down
+    # remove_column :simple_images, :checksum
+  end
+end

data/lib/biovision/base_methods.rb

@@ -2,16 +2,16 @@
 
 # Useful helper methods for application
 module Biovision
+  # Base additional methods for application controller
   module BaseMethods
     extend ActiveSupport::Concern
 
     included do
-      before_action :set_locale
-
       helper_method :visitor_slug
       helper_method :component_handler
       helper_method :current_page, :param_from_request
       helper_method :current_user, :current_language
+      helper_method :content_component, :users_component
     end
 
     # Get current page number from request
@@ -46,6 +46,20 @@ module Biovision
       @current_language ||= Language[locale]
     end
 
+    # Get content component handler
+    #
+    # @return [Biovision::Components::ContentComponent]
+    def content_component
+      @content_component ||= Biovision::Components::ContentComponent[current_user]
+    end
+
+    # Get users component handler
+    #
+    # @return [Biovision::Components::UsersComponent]
+    def users_component
+      @users_component ||= Biovision::Components::UsersComponent[current_user]
+    end
+
     # @return [Agent]
     def agent
       @agent ||= Agent[request.user_agent || 'n/a']
@@ -60,11 +74,7 @@ module Biovision
       end
     end
 
-    def set_locale
-      I18n.locale = params[:locale] || I18n.default_locale
-    end
-
-    protected
+    private
 
     # Handle generic HTTP error without raising exception
     #
@@ -113,12 +123,6 @@ module Biovision
       handle_http_error(:service_unavailable, message, view)
     end
 
-    # Restrict access for anonymous users
-    def restrict_anonymous_access
-      error = t('application.errors.restricted_access')
-      handle_http_401(error) if current_user.nil?
-    end
-
     # Owner information for entity
     #
     # @param [TrueClass|FalseClass] track
@@ -140,22 +144,6 @@ module Biovision
       @remote_ip ||= (request.env['HTTP_X_REAL_IP'] || request.remote_ip)
     end
 
-    # @param [String] next_page
-    def form_processed_ok(next_page)
-      respond_to do |format|
-        format.js { render(js: "document.location.href = '#{next_page}'") }
-        format.html { redirect_to(next_page) }
-      end
-    end
-
-    # @param [Symbol|String] view_to_render
-    def form_processed_with_error(view_to_render)
-      respond_to do |format|
-        format.js { render('shared/forms/errors', status: :bad_request) }
-        format.html { render(view_to_render, status: :bad_request) }
-      end
-    end
-
     def component_class
       Biovision::Components::BaseComponent
     end

data/lib/biovision/engine.rb

@@ -2,6 +2,14 @@
 
 # Biovision CMS
 module Biovision
+  require 'kaminari'
+  require 'rails_i18n'
+  require 'carrierwave'
+  require 'mini_magick'
+  require 'carrierwave-bombshelter'
+  require 'image_optim'
+  require 'rest-client'
+
   # Engine class for Biovision CMS
   class Engine < ::Rails::Engine
     initializer 'biovision.load_base_methods' do
@@ -10,12 +18,6 @@ module Biovision
       end
     end
 
-    config.to_prepare do
-      Dir.glob(Rails.root + 'app/decorators/**/*_decorator*.rb').each do |c|
-        require_dependency(c)
-      end
-    end
-
     config.assets.precompile << %w[biovision_manifest.js]
 
     config.generators do |g|
@@ -30,11 +32,4 @@ module Biovision
       end
     end
   end
-
-  require 'kaminari'
-  require 'rails_i18n'
-  require 'carrierwave'
-  require 'mini_magick'
-  require 'carrierwave-bombshelter'
-  require 'rest-client'
 end

data/lib/biovision/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Biovision
-  VERSION = '0.0.200518.1'
+  VERSION = '0.12.211124.0'
 end

data/lib/tasks/components.rake

@@ -0,0 +1,51 @@
+# frozen_string_literal: true
+
+namespace :components do
+  desc 'Reset role list for all components'
+  task reset_role_list: :environment do
+    BiovisionComponent.pluck(:slug).each do |component|
+      next if component == Biovision::Components::BaseComponent.slug
+
+      handler = Biovision::Components::BaseComponent.handler(component)
+      valid_roles = []
+      handler.role_tree.each do |prefix, postfixes|
+        postfixes.each do |postfix|
+          slug = prefix.blank? ? postfix : "#{prefix}.#{postfix}"
+          valid_roles << slug
+          Role.create(biovision_component: handler.component, slug: slug)
+        end
+      end
+
+      handler.component.roles.each do |role|
+        role.destroy unless valid_roles.include?(role.slug)
+      end
+    end
+
+    base_component = BiovisionComponent[Biovision::Components::BaseComponent]
+    base_roles = %w[admin components.view]
+    base_roles.each do |role|
+      Role.create(biovision_component: base_component, slug: role)
+    end
+    base_component.roles.each do |role|
+      role.destroy unless base_roles.include?(role.slug)
+    end
+  end
+
+  desc 'Export all data from each component'
+  task export_all: :environment do
+    helper = Biovision::Helpers::ExportHelper.new
+    [
+      Language, MetricValue, Metric, BiovisionComponent, SimpleImageTagImage,
+      SimpleImageTag, SimpleImage, UploadedFileTagFile, UploadedFileTag,
+      UploadedFile, UserRole, UserGroup, RoleGroup, Role, Group
+    ].each do |model|
+      helper.export_model(model)
+    end
+    BiovisionComponent.order(:id).pluck(:slug).each do |slug|
+      handler = Biovision::Components::BaseComponent.handler_class(slug)
+      handler.dependent_models.each do |model|
+        helper.export_model(model)
+      end
+    end
+  end
+end