biointerchange 1.0.1 → 1.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.travis.yml +2 -4
- data/Gemfile +2 -3
- data/README.md +36 -22
- data/VERSION +1 -1
- data/examples/Felis_catus.gvf.gz +0 -0
- data/examples/Felis_catus_incl_consequences.vcf.gz +0 -0
- data/generators/rdfxml.rb +1 -1
- data/generators/tsv2rubyclass.rb +31 -0
- data/lib/biointerchange/core.rb +17 -5
- data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +591 -137
- data/lib/biointerchange/genomics/gff3_reader.rb +16 -3
- data/lib/biointerchange/genomics/gvf_reader.rb +1 -1
- data/lib/biointerchange/genomics/vcf_feature.rb +46 -0
- data/lib/biointerchange/genomics/vcf_feature_set.rb +14 -0
- data/lib/biointerchange/genomics/vcf_reader.rb +238 -0
- data/lib/biointerchange/gfvo.rb +689 -553
- data/lib/biointerchange/life_science_registry.rb +3595 -0
- data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +33 -35
- data/lib/biointerchange/writer.rb +11 -16
- data/make.sh +4 -0
- data/spec/exceptions_spec.rb +1 -7
- data/spec/gff3_rdfwriter_spec.rb +2 -16
- data/spec/gvf_rdfwriter_spec.rb +2 -19
- data/spec/phylogenetics_spec.rb +1 -13
- data/spec/text_mining_pdfx_xml_reader_spec.rb +1 -13
- data/spec/text_mining_pubannos_json_reader_spec.rb +1 -14
- data/spec/text_mining_rdfwriter_spec.rb +8 -19
- data/test.sh +4 -0
- data/web/about.html +10 -14
- data/web/api.html +11 -13
- data/web/bootstrap/css/bootstrap-theme.css +347 -0
- data/web/bootstrap/css/bootstrap-theme.css.map +1 -0
- data/web/bootstrap/css/bootstrap-theme.min.css +7 -0
- data/web/bootstrap/css/bootstrap.css +4764 -4603
- data/web/bootstrap/css/bootstrap.css.map +1 -0
- data/web/bootstrap/css/bootstrap.min.css +6 -8
- data/web/bootstrap/fonts/glyphicons-halflings-regular.eot +0 -0
- data/web/bootstrap/fonts/glyphicons-halflings-regular.svg +229 -0
- data/web/bootstrap/fonts/glyphicons-halflings-regular.ttf +0 -0
- data/web/bootstrap/fonts/glyphicons-halflings-regular.woff +0 -0
- data/web/bootstrap/js/bootstrap.js +1372 -1448
- data/web/bootstrap/js/bootstrap.min.js +5 -5
- data/web/cli.html +14 -28
- data/web/index.html +15 -33
- data/web/ontologies.html +1089 -945
- data/web/webservices.html +12 -14
- metadata +24 -27
- data/lib/biointerchange/gff3o.rb +0 -525
- data/lib/biointerchange/gvf1o.rb +0 -1354
- data/web/bootstrap/css/bootstrap-responsive.css +0 -1040
- data/web/bootstrap/css/bootstrap-responsive.min.css +0 -9
- data/web/bootstrap/img/glyphicons-halflings-white.png +0 -0
- data/web/bootstrap/img/glyphicons-halflings.png +0 -0
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module BioInterchange
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class LifeScienceRegistry
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def self.bind
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"http://www.bind.ca/Action?identifier=bindid&idsearch=$id"
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end
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def self.chebi
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"http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$id"
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end
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def self.ensembl
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"http://www.ensembl.org/id/$id"
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end
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def self.ec
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"http://www.chem.qmul.ac.uk/iubmb/$id"
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end
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def self.uniprot
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"http://www.uniprot.org/uniprot/$id"
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end
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def self.taxonomy
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"http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$id"
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end
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def self.biomodels
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"http://www.ebi.ac.uk/biomodels-main/$id"
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end
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def self.miriam_collection
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"http://www.ebi.ac.uk/miriam/main/$id"
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end
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def self.icd
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"http://apps.who.int/classifications/icd10/browse/2010/en#/$id"
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end
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def self.intact
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"http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$id"
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end
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def self.interpro
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"http://www.ebi.ac.uk/interpro/IEntry?ac=$id"
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end
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def self.kegg_pathway
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"http://www.genome.jp/dbget-bin/www_bget?map$id"
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end
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def self.kegg_compound
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"http://www.genome.jp/dbget-bin/www_bget?cpd:$id"
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end
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def self.kegg_reaction
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"http://www.genome.jp/dbget-bin/www_bget?rn:$id"
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end
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def self.medline
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"http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-view+MedlineFull+[medline-PMID:$id] "
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end
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def self.pubmed
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"http://www.ncbi.nlm.nih.gov/pubmed/$id"
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end
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def self.omim
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"http://www.ncbi.nlm.nih.gov/omim/$id"
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end
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def self.pirsf
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"http://pir.georgetown.edu/cgi-bin/ipcSF?id=$id"
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end
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def self.reactome
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"http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_ID=$id"
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end
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def self.doi
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"http://dx.doi.org/$id"
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end
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def self.pdb
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"http://www.rcsb.org/pdb/explore/explore.do?structureId=$id"
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end
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def self.go
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"http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:$id"
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end
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def self.sgd
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"http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=$id"
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end
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def self.sbo
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"http://www.ebi.ac.uk/sbo/main/$id"
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end
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def self.kegg_drug
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"http://www.genome.jp/dbget-bin/www_bget?dr:$id"
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end
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def self.kegg_glycan
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"http://www.genome.jp/dbget-bin/www_bget?gl:$id"
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end
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def self.pfam
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"http://pfam.sanger.ac.uk/family?entry=$id"
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end
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def self.flybase
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"http://flybase.org/reports/$id.html"
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end
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def self.wormpep
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"http://www.wormbase.org/db/seq/protein?name=$id"
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end
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def self.prosite
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"http://www.expasy.org/cgi-bin/nicesite.pl?$id"
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end
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def self.pubchem_substance
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"http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=$id"
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end
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def self.pubchem_compound
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"http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?db=pccompound&term=$id"
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end
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def self.arxiv
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"http://arxiv.org/abs/$id"
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end
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def self.arrayexpress
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"http://www.ebi.ac.uk/arrayexpress/experiments/$id"
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end
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def self.mgi
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"http://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:$id"
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end
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def self.sabiork_reaction
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"http://sabiork.h-its.org/index2.jsp?reac=$id"
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end
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def self.tcdb
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"http://www.tcdb.org/search/result.php?tc=$id"
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end
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def self.uniparc
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"http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id"
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end
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def self.mint
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"http://mint.bio.uniroma2.it/mint/search/interactor.do?queryType=protein&interactorAc=$id"
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end
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def self.ipi
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"http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$id&format=default"
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end
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def self.dip
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"http://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id"
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end
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def self.signaling_gateway
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"http://www.signaling-gateway.org/molecule/query?afcsid=$id"
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end
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def self.resid
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"http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+6JSUg1NA6u4+-e+[RESID:'$id']"
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end
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def self.rgd
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"http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id"
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end
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def self.tair_protein
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"http://arabidopsis.org/servlets/TairObject?accession=$id"
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end
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def self.tair_gene
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"http://arabidopsis.org/servlets/TairObject?accession=$id"
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end
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def self.tair_locus
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"http://arabidopsis.org/servlets/TairObject?type=locus&name=$id"
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end
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def self.hmdb
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"http://www.hmdb.ca/metabolites/$id"
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end
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def self.lipidmaps
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"http://www.lipidmaps.org/data/get_lm_lipids_dbgif.php?LM_ID=$id"
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end
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def self.peptideatlas
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"https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/GetProtein?atlas_build_id=242&protein_name=$id&action=QUERY"
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end
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def self.geo
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"http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$id"
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end
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def self.eco
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"http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
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end
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def self.sgd_pathways
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"http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id"
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end
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def self.biogrid
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"http://thebiogrid.org/$id"
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end
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def self.merops
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"http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$id"
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end
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def self.panther
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"http://www.pantherdb.org/panther/family.do?clsAccession=$id"
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end
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def self.panther_family
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"http://www.pantherdb.org/panther/family.do?clsAccession=$id"
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end
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def self.sprint
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"http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false®expr=off"
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end
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def self.ligandexpo
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"http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid"
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end
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def self.aclame
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"http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id"
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end
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def self.isbn
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"http://isbndb.com/search-all.html?kw=$id"
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end
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def self.pride
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"http://www.ebi.ac.uk/pride/experimentLink.do?experimentAccessionNumber=$id"
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end
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def self.matrixdb
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"http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$id&class=Association"
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end
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def self.ncbigene
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"http://www.ncbi.nlm.nih.gov/gene/$id"
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end
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def self.kegg_gene
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"http://www.genome.jp/dbget-bin/www_bget?[?species]:$id"
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end
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def self.brenda
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"http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id"
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end
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def self.pubchem_bioassay
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"http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id"
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end
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def self.pathwaycommons
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"http://www.pathwaycommons.org/pc/record2.do?id=$id"
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end
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def self.hovergen
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"http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$id&db=HOVERGEN"
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end
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def self.mmmp
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"http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id"
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end
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def self.wikipathways
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"http://www.wikipathways.org/index.php/Pathway:$id"
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287
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+
end
|
|
288
|
+
|
|
289
|
+
def self.macie
|
|
290
|
+
"http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=$id"
|
|
291
|
+
end
|
|
292
|
+
|
|
293
|
+
def self.mirbase
|
|
294
|
+
"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id"
|
|
295
|
+
end
|
|
296
|
+
|
|
297
|
+
def self.zfin
|
|
298
|
+
"http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=$id"
|
|
299
|
+
end
|
|
300
|
+
|
|
301
|
+
def self.hgnc_id
|
|
302
|
+
"http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id"
|
|
303
|
+
end
|
|
304
|
+
|
|
305
|
+
def self.so
|
|
306
|
+
"http://www.sequenceontology.org/miso/current_release/term/$id"
|
|
307
|
+
end
|
|
308
|
+
|
|
309
|
+
def self.rhea
|
|
310
|
+
"http://www.ebi.ac.uk/rhea//reaction.xhtml?id=$id"
|
|
311
|
+
end
|
|
312
|
+
|
|
313
|
+
def self.unipathway
|
|
314
|
+
"http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id"
|
|
315
|
+
end
|
|
316
|
+
|
|
317
|
+
def self.chembl_compound
|
|
318
|
+
"https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id"
|
|
319
|
+
end
|
|
320
|
+
|
|
321
|
+
def self.chembl_target
|
|
322
|
+
"https://www.ebi.ac.uk/chembldb/index.php/target/inspect/$id"
|
|
323
|
+
end
|
|
324
|
+
|
|
325
|
+
def self.sabiork_kinetic
|
|
326
|
+
"http://sabiork.h-its.org/kineticLawEntry.jsp?kinlawid=$id"
|
|
327
|
+
end
|
|
328
|
+
|
|
329
|
+
def self.lgicdb
|
|
330
|
+
"http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php"
|
|
331
|
+
end
|
|
332
|
+
|
|
333
|
+
def self.atc
|
|
334
|
+
"http://www.whocc.no/atc_ddd_index/?code=$id"
|
|
335
|
+
end
|
|
336
|
+
|
|
337
|
+
def self.pharmgkb_pathways
|
|
338
|
+
"http://www.pharmgkb.org/pathway/$id"
|
|
339
|
+
end
|
|
340
|
+
|
|
341
|
+
def self.pharmgkb_disease
|
|
342
|
+
"http://www.pharmgkb.org/disease/$id"
|
|
343
|
+
end
|
|
344
|
+
|
|
345
|
+
def self.pharmgkb_drug
|
|
346
|
+
"http://www.pharmgkb.org/drug/$id"
|
|
347
|
+
end
|
|
348
|
+
|
|
349
|
+
def self.ttd_drug
|
|
350
|
+
"http://bidd.nus.edu.sg/group/cjttd/ZFTTDDRUG.asp?ID=$id"
|
|
351
|
+
end
|
|
352
|
+
|
|
353
|
+
def self.ttd_target
|
|
354
|
+
"http://bidd.nus.edu.sg/group/cjttd/ZFTTDDetail.asp?ID=$id"
|
|
355
|
+
end
|
|
356
|
+
|
|
357
|
+
def self.neurondb
|
|
358
|
+
"http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$id"
|
|
359
|
+
end
|
|
360
|
+
|
|
361
|
+
def self.neuromorpho
|
|
362
|
+
"http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$id"
|
|
363
|
+
end
|
|
364
|
+
|
|
365
|
+
def self.chemidplus
|
|
366
|
+
"http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id"
|
|
367
|
+
end
|
|
368
|
+
|
|
369
|
+
def self.biosystems
|
|
370
|
+
"http://www.ncbi.nlm.nih.gov/biosystems/$id"
|
|
371
|
+
end
|
|
372
|
+
|
|
373
|
+
def self.ctd
|
|
374
|
+
"http://ctd.mdibl.org/detail.go?type=chem&acc=$id"
|
|
375
|
+
end
|
|
376
|
+
|
|
377
|
+
def self.bionumbers
|
|
378
|
+
"http://www.bionumbers.hms.harvard.edu/bionumber.aspx?s=y&id=$id&ver=1"
|
|
379
|
+
end
|
|
380
|
+
|
|
381
|
+
def self.drugbank
|
|
382
|
+
"http://www.drugbank.ca/drugs/$id"
|
|
383
|
+
end
|
|
384
|
+
|
|
385
|
+
def self.t3db
|
|
386
|
+
"http://www.t3db.org/toxins/$id"
|
|
387
|
+
end
|
|
388
|
+
|
|
389
|
+
def self.smpdb
|
|
390
|
+
"http://pathman.smpdb.ca/pathways/$id/pathway"
|
|
391
|
+
end
|
|
392
|
+
|
|
393
|
+
def self.phosphosite_protein
|
|
394
|
+
"http://www.phosphosite.org/proteinAction.do?id=$id"
|
|
395
|
+
end
|
|
396
|
+
|
|
397
|
+
def self.genedb
|
|
398
|
+
"http://www.genedb.org/gene/$id"
|
|
399
|
+
end
|
|
400
|
+
|
|
401
|
+
def self.pato
|
|
402
|
+
"http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
|
|
403
|
+
end
|
|
404
|
+
|
|
405
|
+
def self.ccd
|
|
406
|
+
"http://www.ebi.ac.uk/msd-srv/msdchem/cgi-bin/cgi.pl?FUNCTION=record&ENTITY=CHEM_COMP&PRIMARYKEY=$id&APPLICATION=1"
|
|
407
|
+
end
|
|
408
|
+
|
|
409
|
+
def self.glycomedb
|
|
410
|
+
"http://www.glycome-db.org/database/showStructure.action?glycomeId=$id"
|
|
411
|
+
end
|
|
412
|
+
|
|
413
|
+
def self.lipidbank
|
|
414
|
+
"http://lipidbank.jp/cgi-bin/detail.cgi?id=$id"
|
|
415
|
+
end
|
|
416
|
+
|
|
417
|
+
def self.kegg_orthology
|
|
418
|
+
"http://www.genome.jp/dbget-bin/www_bget?ko:$id"
|
|
419
|
+
end
|
|
420
|
+
|
|
421
|
+
def self.prodom
|
|
422
|
+
"http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id"
|
|
423
|
+
end
|
|
424
|
+
|
|
425
|
+
def self.smart
|
|
426
|
+
"http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id"
|
|
427
|
+
end
|
|
428
|
+
|
|
429
|
+
def self.cdd
|
|
430
|
+
"http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id"
|
|
431
|
+
end
|
|
432
|
+
|
|
433
|
+
def self.mmdb
|
|
434
|
+
"http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id"
|
|
435
|
+
end
|
|
436
|
+
|
|
437
|
+
def self.imex
|
|
438
|
+
"http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id"
|
|
439
|
+
end
|
|
440
|
+
|
|
441
|
+
def self.irefweb
|
|
442
|
+
"http://wodaklab.org/iRefWeb/interaction/show/$id"
|
|
443
|
+
end
|
|
444
|
+
|
|
445
|
+
def self.mpi
|
|
446
|
+
"http://www.jcvi.org/mpidb/interaction.php?pname=$id"
|
|
447
|
+
end
|
|
448
|
+
|
|
449
|
+
def self.phosphosite_residue
|
|
450
|
+
"http://www.phosphosite.org/siteAction.do?id=$id"
|
|
451
|
+
end
|
|
452
|
+
|
|
453
|
+
def self.neurolex
|
|
454
|
+
"http://www.neurolex.org/wiki/$id"
|
|
455
|
+
end
|
|
456
|
+
|
|
457
|
+
def self.nif_subcellular
|
|
458
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
459
|
+
end
|
|
460
|
+
|
|
461
|
+
def self.obi
|
|
462
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
463
|
+
end
|
|
464
|
+
|
|
465
|
+
def self.sabiork_ec
|
|
466
|
+
"http://sabiork.h-its.org/index2.jsp?EC=$id"
|
|
467
|
+
end
|
|
468
|
+
|
|
469
|
+
def self.jws
|
|
470
|
+
"http://jjj.mib.ac.uk/cgi-bin/processModelSelection.py?keytype=modelname&keyword=$id"
|
|
471
|
+
end
|
|
472
|
+
|
|
473
|
+
def self.modeldb
|
|
474
|
+
"http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$id"
|
|
475
|
+
end
|
|
476
|
+
|
|
477
|
+
def self.subtiwiki
|
|
478
|
+
"http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$id"
|
|
479
|
+
end
|
|
480
|
+
|
|
481
|
+
def self.pid
|
|
482
|
+
"http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id"
|
|
483
|
+
end
|
|
484
|
+
|
|
485
|
+
def self.doqcs_model
|
|
486
|
+
"http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$id"
|
|
487
|
+
end
|
|
488
|
+
|
|
489
|
+
def self.doqcs_pathway
|
|
490
|
+
"http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$id"
|
|
491
|
+
end
|
|
492
|
+
|
|
493
|
+
def self.uo
|
|
494
|
+
"http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
|
|
495
|
+
end
|
|
496
|
+
|
|
497
|
+
def self.clinicaltrials
|
|
498
|
+
"http://clinicaltrials.gov/ct2/show/$id"
|
|
499
|
+
end
|
|
500
|
+
|
|
501
|
+
def self.chemspider
|
|
502
|
+
"http://www.chemspider.com/Chemical-Structure.$id.html"
|
|
503
|
+
end
|
|
504
|
+
|
|
505
|
+
def self.ncit
|
|
506
|
+
"http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$id"
|
|
507
|
+
end
|
|
508
|
+
|
|
509
|
+
def self.biocatalogue
|
|
510
|
+
"http://www.biocatalogue.org/services/$id"
|
|
511
|
+
end
|
|
512
|
+
|
|
513
|
+
def self.pr
|
|
514
|
+
"http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=$id"
|
|
515
|
+
end
|
|
516
|
+
|
|
517
|
+
def self.omia
|
|
518
|
+
"http://omia.angis.org.au/retrieve.shtml?pid=$id"
|
|
519
|
+
end
|
|
520
|
+
|
|
521
|
+
def self.chembank
|
|
522
|
+
"http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$id"
|
|
523
|
+
end
|
|
524
|
+
|
|
525
|
+
def self.csa
|
|
526
|
+
"http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/CSA/CSA_Site_Wrapper.pl?pdb=$id"
|
|
527
|
+
end
|
|
528
|
+
|
|
529
|
+
def self.cgd
|
|
530
|
+
"http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$id"
|
|
531
|
+
end
|
|
532
|
+
|
|
533
|
+
def self.antweb
|
|
534
|
+
"http://www.antweb.org/specimen.do?name=$id"
|
|
535
|
+
end
|
|
536
|
+
|
|
537
|
+
def self.pmc
|
|
538
|
+
"http://www.ncbi.nlm.nih.gov/pmc/articles/$id/?tool=pmcentrez"
|
|
539
|
+
end
|
|
540
|
+
|
|
541
|
+
def self.amoebadb
|
|
542
|
+
"http://amoebadb.org/amoeba/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
543
|
+
end
|
|
544
|
+
|
|
545
|
+
def self.cryptodb
|
|
546
|
+
"http://cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
547
|
+
end
|
|
548
|
+
|
|
549
|
+
def self.plasmodb
|
|
550
|
+
"http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id&project_id=PlasmoDB"
|
|
551
|
+
end
|
|
552
|
+
|
|
553
|
+
def self.giardiadb
|
|
554
|
+
"http://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&primary_key=$id"
|
|
555
|
+
end
|
|
556
|
+
|
|
557
|
+
def self.microsporidia
|
|
558
|
+
"http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
559
|
+
end
|
|
560
|
+
|
|
561
|
+
def self.toxoplasma
|
|
562
|
+
"http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
563
|
+
end
|
|
564
|
+
|
|
565
|
+
def self.trichdb
|
|
566
|
+
"http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
567
|
+
end
|
|
568
|
+
|
|
569
|
+
def self.tritrypdb
|
|
570
|
+
"http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
571
|
+
end
|
|
572
|
+
|
|
573
|
+
def self.bdgp
|
|
574
|
+
"http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id"
|
|
575
|
+
end
|
|
576
|
+
|
|
577
|
+
def self.beetlebase
|
|
578
|
+
"http://www.beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$id"
|
|
579
|
+
end
|
|
580
|
+
|
|
581
|
+
def self.bold
|
|
582
|
+
"http://www.barcodinglife.com/views/taxbrowser.php?taxid=$id"
|
|
583
|
+
end
|
|
584
|
+
|
|
585
|
+
def self.dbest
|
|
586
|
+
"http://www.ncbi.nlm.nih.gov/nucest/$id"
|
|
587
|
+
end
|
|
588
|
+
|
|
589
|
+
def self.dbprobe
|
|
590
|
+
"http://www.ncbi.nlm.nih.gov/genome/probe/reports/probereport.cgi?uid=$id"
|
|
591
|
+
end
|
|
592
|
+
|
|
593
|
+
def self.dbsnp
|
|
594
|
+
"http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$id"
|
|
595
|
+
end
|
|
596
|
+
|
|
597
|
+
def self.ecogene
|
|
598
|
+
"http://ecogene.org/geneInfo.php?eg_id=$id"
|
|
599
|
+
end
|
|
600
|
+
|
|
601
|
+
def self.gabi
|
|
602
|
+
"http://gabi.rzpd.de/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$id&Mode=ShowBioObject"
|
|
603
|
+
end
|
|
604
|
+
|
|
605
|
+
def self.greengenes
|
|
606
|
+
"http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$id"
|
|
607
|
+
end
|
|
608
|
+
|
|
609
|
+
def self.grin_taxonomy
|
|
610
|
+
"http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$id"
|
|
611
|
+
end
|
|
612
|
+
|
|
613
|
+
def self.hinv_locus
|
|
614
|
+
"http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$id"
|
|
615
|
+
end
|
|
616
|
+
|
|
617
|
+
def self.hinv_transcript
|
|
618
|
+
"http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$id"
|
|
619
|
+
end
|
|
620
|
+
|
|
621
|
+
def self.hinv_protein
|
|
622
|
+
"http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$id"
|
|
623
|
+
end
|
|
624
|
+
|
|
625
|
+
def self.homd_seq
|
|
626
|
+
"http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$id"
|
|
627
|
+
end
|
|
628
|
+
|
|
629
|
+
def self.homd_taxon
|
|
630
|
+
"http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic"
|
|
631
|
+
end
|
|
632
|
+
|
|
633
|
+
def self.ird_segment
|
|
634
|
+
"http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$id"
|
|
635
|
+
end
|
|
636
|
+
|
|
637
|
+
def self.isfinder
|
|
638
|
+
"http://www-is.biotoul.fr/index.html?is_special_name=$id"
|
|
639
|
+
end
|
|
640
|
+
|
|
641
|
+
def self.jcm
|
|
642
|
+
"http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$id"
|
|
643
|
+
end
|
|
644
|
+
|
|
645
|
+
def self.img_taxon
|
|
646
|
+
"http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&taxon_oid=$id"
|
|
647
|
+
end
|
|
648
|
+
|
|
649
|
+
def self.img_gene
|
|
650
|
+
"http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$id"
|
|
651
|
+
end
|
|
652
|
+
|
|
653
|
+
def self.maizegdb
|
|
654
|
+
"http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$id"
|
|
655
|
+
end
|
|
656
|
+
|
|
657
|
+
def self.mycobank
|
|
658
|
+
"http://www.mycobank.org/MycoTaxo.aspx?Link=T&Rec=$id"
|
|
659
|
+
end
|
|
660
|
+
|
|
661
|
+
def self.nbrc
|
|
662
|
+
"http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$id"
|
|
663
|
+
end
|
|
664
|
+
|
|
665
|
+
def self.pseudomonas
|
|
666
|
+
"http://www.pseudomonas.com/getAnnotation.do?locusID=$id"
|
|
667
|
+
end
|
|
668
|
+
|
|
669
|
+
def self.gramene_protein
|
|
670
|
+
"http://www.gramene.org/db/ontology/search?id=$id"
|
|
671
|
+
end
|
|
672
|
+
|
|
673
|
+
def self.gramene_gene
|
|
674
|
+
"http://www.gramene.org/db/genes/search_gene?acc=$id"
|
|
675
|
+
end
|
|
676
|
+
|
|
677
|
+
def self.gramene_taxonomy
|
|
678
|
+
"http://www.gramene.org/db/ontology/search?id=$id"
|
|
679
|
+
end
|
|
680
|
+
|
|
681
|
+
def self.gramene_qtl
|
|
682
|
+
"http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$id"
|
|
683
|
+
end
|
|
684
|
+
|
|
685
|
+
def self.sgn
|
|
686
|
+
"http://solgenomics.net/phenome/locus_display.pl?locus_id=$id"
|
|
687
|
+
end
|
|
688
|
+
|
|
689
|
+
def self.xenbase
|
|
690
|
+
"http://www.xenbase.org/gene/showgene.do?method=display&geneId=$id"
|
|
691
|
+
end
|
|
692
|
+
|
|
693
|
+
def self.bioportal
|
|
694
|
+
"http://bioportal.bioontology.org/ontologies/$id"
|
|
695
|
+
end
|
|
696
|
+
|
|
697
|
+
def self.miriam_resource
|
|
698
|
+
"http://www.ebi.ac.uk/miriam/main/resources/$id"
|
|
699
|
+
end
|
|
700
|
+
|
|
701
|
+
def self.edam
|
|
702
|
+
"http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
|
|
703
|
+
end
|
|
704
|
+
|
|
705
|
+
def self.pmdb
|
|
706
|
+
"http://mi.caspur.it/PMDB/user/search.php?idsearch=$id"
|
|
707
|
+
end
|
|
708
|
+
|
|
709
|
+
def self.a_2dbaseecoli
|
|
710
|
+
"http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi?ac=$id"
|
|
711
|
+
end
|
|
712
|
+
|
|
713
|
+
def self.agd
|
|
714
|
+
"http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=$id"
|
|
715
|
+
end
|
|
716
|
+
|
|
717
|
+
def self.arachnoserver
|
|
718
|
+
"http://www.arachnoserver.org/toxincard.html?id=$id"
|
|
719
|
+
end
|
|
720
|
+
|
|
721
|
+
def self.biocyc
|
|
722
|
+
"http://biocyc.org/ECOLI/NEW-IMAGE?object=$id"
|
|
723
|
+
end
|
|
724
|
+
|
|
725
|
+
def self.cazy
|
|
726
|
+
"http://www.cazy.org/$id.html"
|
|
727
|
+
end
|
|
728
|
+
|
|
729
|
+
def self.goa
|
|
730
|
+
"http://www.ebi.ac.uk/QuickGO/GTerm?id=$id"
|
|
731
|
+
end
|
|
732
|
+
|
|
733
|
+
def self.paleodb
|
|
734
|
+
"http://paleodb.geology.wisc.edu/cgi-bin/bridge.pl?a=basicTaxonInfo&taxon_no=$id"
|
|
735
|
+
end
|
|
736
|
+
|
|
737
|
+
def self.compulyeast
|
|
738
|
+
"http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id"
|
|
739
|
+
end
|
|
740
|
+
|
|
741
|
+
def self.disprot
|
|
742
|
+
"http://www.disprot.org/protein.php?id=$id"
|
|
743
|
+
end
|
|
744
|
+
|
|
745
|
+
def self.echobase
|
|
746
|
+
"http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id"
|
|
747
|
+
end
|
|
748
|
+
|
|
749
|
+
def self.eggnog
|
|
750
|
+
"http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$id"
|
|
751
|
+
end
|
|
752
|
+
|
|
753
|
+
def self.ensembl_bacteria
|
|
754
|
+
"http://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=$id"
|
|
755
|
+
end
|
|
756
|
+
|
|
757
|
+
def self.ensembl_protist
|
|
758
|
+
"http://protists.ensembl.org/[?species_name]/Gene/Summary?g=$id"
|
|
759
|
+
end
|
|
760
|
+
|
|
761
|
+
def self.ensembl_metazoa
|
|
762
|
+
"http://metazoa.ensembl.org/[?species_name]/Gene/Summary?g=$id"
|
|
763
|
+
end
|
|
764
|
+
|
|
765
|
+
def self.ensembl_plant
|
|
766
|
+
"http://plants.ensembl.org/[?species_name]/Gene/Summary?g=$id"
|
|
767
|
+
end
|
|
768
|
+
|
|
769
|
+
def self.ensembl_fungi
|
|
770
|
+
"http://fungi.ensembl.org/[?species_name]/Gene/Summary?g=$id"
|
|
771
|
+
end
|
|
772
|
+
|
|
773
|
+
def self.euhcvdb
|
|
774
|
+
"http://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$id"
|
|
775
|
+
end
|
|
776
|
+
|
|
777
|
+
def self.genatlas
|
|
778
|
+
"http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$id"
|
|
779
|
+
end
|
|
780
|
+
|
|
781
|
+
def self.cath
|
|
782
|
+
"http://www.cathdb.info/cathnode/$id"
|
|
783
|
+
end
|
|
784
|
+
|
|
785
|
+
def self.genefarm
|
|
786
|
+
"http://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$id"
|
|
787
|
+
end
|
|
788
|
+
|
|
789
|
+
def self.gpcrdb
|
|
790
|
+
"http://www.gpcr.org/7tm/proteins/$id"
|
|
791
|
+
end
|
|
792
|
+
|
|
793
|
+
def self.hogenom
|
|
794
|
+
"http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$id"
|
|
795
|
+
end
|
|
796
|
+
|
|
797
|
+
def self.genetree
|
|
798
|
+
"http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$id"
|
|
799
|
+
end
|
|
800
|
+
|
|
801
|
+
def self.myco_tuber
|
|
802
|
+
"http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id"
|
|
803
|
+
end
|
|
804
|
+
|
|
805
|
+
def self.myco_lepra
|
|
806
|
+
"http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id"
|
|
807
|
+
end
|
|
808
|
+
|
|
809
|
+
def self.myco_marinum
|
|
810
|
+
"http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$id"
|
|
811
|
+
end
|
|
812
|
+
|
|
813
|
+
def self.myco_smeg
|
|
814
|
+
"http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$id"
|
|
815
|
+
end
|
|
816
|
+
|
|
817
|
+
def self.orphanet
|
|
818
|
+
"http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=$id"
|
|
819
|
+
end
|
|
820
|
+
|
|
821
|
+
def self.orthodb
|
|
822
|
+
"http://cegg.unige.ch/orthodb3/results?searchtext=$id"
|
|
823
|
+
end
|
|
824
|
+
|
|
825
|
+
def self.peroxibase
|
|
826
|
+
"http://peroxibase.toulouse.inra.fr/listing.php?action=view&id=$id"
|
|
827
|
+
end
|
|
828
|
+
|
|
829
|
+
def self.pmap_substratedb
|
|
830
|
+
"http://substrate.burnham.org/protein/annotation/$id/html"
|
|
831
|
+
end
|
|
832
|
+
|
|
833
|
+
def self.pmap_cutdb
|
|
834
|
+
"http://www.proteolysis.org/proteases/m_summarypg/$id"
|
|
835
|
+
end
|
|
836
|
+
|
|
837
|
+
def self.protclustdb
|
|
838
|
+
"http://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=ShowDetailView&TermToSearch=$id"
|
|
839
|
+
end
|
|
840
|
+
|
|
841
|
+
def self.pmp
|
|
842
|
+
"http://www.proteinmodelportal.org/query/uniprot/$id"
|
|
843
|
+
end
|
|
844
|
+
|
|
845
|
+
def self.protonet_proteincard
|
|
846
|
+
"http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$id"
|
|
847
|
+
end
|
|
848
|
+
|
|
849
|
+
def self.protonet_cluster
|
|
850
|
+
"http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$id"
|
|
851
|
+
end
|
|
852
|
+
|
|
853
|
+
def self.rebase
|
|
854
|
+
"http://rebase.neb.com/rebase/enz/$id.html"
|
|
855
|
+
end
|
|
856
|
+
|
|
857
|
+
def self.swissmodel
|
|
858
|
+
"http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$id"
|
|
859
|
+
end
|
|
860
|
+
|
|
861
|
+
def self.vectorbase
|
|
862
|
+
"http://www.vectorbase.org/[?species_name]/Gene/Summary?db=core;g=$id"
|
|
863
|
+
end
|
|
864
|
+
|
|
865
|
+
def self.do
|
|
866
|
+
"http://disease-ontology.org/term/$id"
|
|
867
|
+
end
|
|
868
|
+
|
|
869
|
+
def self.mirbase_mature
|
|
870
|
+
"http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id"
|
|
871
|
+
end
|
|
872
|
+
|
|
873
|
+
def self.nextprot
|
|
874
|
+
"http://www.nextprot.org/db/entry/$id"
|
|
875
|
+
end
|
|
876
|
+
|
|
877
|
+
def self.cas
|
|
878
|
+
"http://commonchemistry.org/ChemicalDetail.aspx?ref=$id"
|
|
879
|
+
end
|
|
880
|
+
|
|
881
|
+
def self.kegg_genome
|
|
882
|
+
"http://www.genome.jp/dbget-bin/www_bget?gn:$id"
|
|
883
|
+
end
|
|
884
|
+
|
|
885
|
+
def self.kegg_metagenome
|
|
886
|
+
"http://www.genome.jp/kegg-bin/show_organism?org=$id"
|
|
887
|
+
end
|
|
888
|
+
|
|
889
|
+
def self.narcis
|
|
890
|
+
"http://www.narcis.nl/publication/RecordID/$id"
|
|
891
|
+
end
|
|
892
|
+
|
|
893
|
+
def self.jcsd
|
|
894
|
+
"http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp?CONTENT=syosai&SN=$id"
|
|
895
|
+
end
|
|
896
|
+
|
|
897
|
+
def self.pw
|
|
898
|
+
"http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=$id"
|
|
899
|
+
end
|
|
900
|
+
|
|
901
|
+
def self.scretf
|
|
902
|
+
"http://stormo.wustl.edu/ScerTF/details/$id/"
|
|
903
|
+
end
|
|
904
|
+
|
|
905
|
+
def self.pharmgkb_gene
|
|
906
|
+
"http://www.pharmgkb.org/gene/$id"
|
|
907
|
+
end
|
|
908
|
+
|
|
909
|
+
def self.mirnest
|
|
910
|
+
"http://lemur.amu.edu.pl/share/php/mirnest/search.php?search_term=$id"
|
|
911
|
+
end
|
|
912
|
+
|
|
913
|
+
def self.napp
|
|
914
|
+
"http://napp.u-psud.fr/Niveau2.php?specie=$id"
|
|
915
|
+
end
|
|
916
|
+
|
|
917
|
+
def self.noncode
|
|
918
|
+
"http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id"
|
|
919
|
+
end
|
|
920
|
+
|
|
921
|
+
def self.virsirna
|
|
922
|
+
"http://crdd.osdd.net/servers/virsirnadb/record.php?details=$id"
|
|
923
|
+
end
|
|
924
|
+
|
|
925
|
+
def self.elm
|
|
926
|
+
"http://elm.eu.org/elms/elmPages/$id.html"
|
|
927
|
+
end
|
|
928
|
+
|
|
929
|
+
def self.mimodb
|
|
930
|
+
"http://immunet.cn/mimodb/browse.php?table=mimoset&ID=$id"
|
|
931
|
+
end
|
|
932
|
+
|
|
933
|
+
def self.sitex
|
|
934
|
+
"http://www-bionet.sscc.ru/sitex/index.php?siteid=$id"
|
|
935
|
+
end
|
|
936
|
+
|
|
937
|
+
def self.bykdb
|
|
938
|
+
"http://bykdb.ibcp.fr/data/html/$id.html"
|
|
939
|
+
end
|
|
940
|
+
|
|
941
|
+
def self.conoserver
|
|
942
|
+
"http://www.conoserver.org/?page=card&table=protein&id=$id"
|
|
943
|
+
end
|
|
944
|
+
|
|
945
|
+
def self.topfind
|
|
946
|
+
"http://clipserve.clip.ubc.ca/topfind/proteins/$id"
|
|
947
|
+
end
|
|
948
|
+
|
|
949
|
+
def self.mipmod
|
|
950
|
+
"http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$id"
|
|
951
|
+
end
|
|
952
|
+
|
|
953
|
+
def self.cellimage
|
|
954
|
+
"http://cellimagelibrary.org/images/$id"
|
|
955
|
+
end
|
|
956
|
+
|
|
957
|
+
def self.combine_specifications
|
|
958
|
+
"http://co.mbine.org/specifications/$id"
|
|
959
|
+
end
|
|
960
|
+
|
|
961
|
+
def self.cygd
|
|
962
|
+
"http://mips.helmholtz-muenchen.de/genre/proj/yeast/singleGeneReport.html?entry=$id"
|
|
963
|
+
end
|
|
964
|
+
|
|
965
|
+
def self.huge
|
|
966
|
+
"http://www.kazusa.or.jp/huge/cgi/view_direct.cgi?id=$id"
|
|
967
|
+
end
|
|
968
|
+
|
|
969
|
+
def self.bindingdb
|
|
970
|
+
"http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=$id"
|
|
971
|
+
end
|
|
972
|
+
|
|
973
|
+
def self.abs
|
|
974
|
+
"http://genome.crg.es/datasets/abs2005/entries/$id.html"
|
|
975
|
+
end
|
|
976
|
+
|
|
977
|
+
def self.apd
|
|
978
|
+
"http://aps.unmc.edu/AP/database/query_output.php?ID=$id"
|
|
979
|
+
end
|
|
980
|
+
|
|
981
|
+
def self.chemdb
|
|
982
|
+
"http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$id"
|
|
983
|
+
end
|
|
984
|
+
|
|
985
|
+
def self.dpvweb
|
|
986
|
+
"http://www.dpvweb.net/dpv/showdpv.php?dpvno=$id"
|
|
987
|
+
end
|
|
988
|
+
|
|
989
|
+
def self.iuphar_receptor
|
|
990
|
+
"http://www.iuphar-db.org/GPCR/ReceptorDisplayForward?receptorID=$id"
|
|
991
|
+
end
|
|
992
|
+
|
|
993
|
+
def self.aceview_worm
|
|
994
|
+
"http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=[?species_database]&c=Gene&l=$id"
|
|
995
|
+
end
|
|
996
|
+
|
|
997
|
+
def self.asap
|
|
998
|
+
"https://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=$id"
|
|
999
|
+
end
|
|
1000
|
+
|
|
1001
|
+
def self.dictybase_gene
|
|
1002
|
+
"http://dictybase.org/db/cgi-bin/gene_page.pl?gene_name=$id"
|
|
1003
|
+
end
|
|
1004
|
+
|
|
1005
|
+
def self.worfdb
|
|
1006
|
+
"http://worfdb.dfci.harvard.edu/searchallwormorfs.pl?sid=$id"
|
|
1007
|
+
end
|
|
1008
|
+
|
|
1009
|
+
def self.nextdb
|
|
1010
|
+
"http://nematode.lab.nig.ac.jp/cgi-bin/dbest/SrchByCosmid.sh?csmd=$id"
|
|
1011
|
+
end
|
|
1012
|
+
|
|
1013
|
+
def self.pgn
|
|
1014
|
+
"http://pgn.cornell.edu/search/unigene_search_result.pl?unigene_id=$id"
|
|
1015
|
+
end
|
|
1016
|
+
|
|
1017
|
+
def self.hamap
|
|
1018
|
+
"http://us.expasy.org/unirule/$id"
|
|
1019
|
+
end
|
|
1020
|
+
|
|
1021
|
+
def self.rouge
|
|
1022
|
+
"http://www.kazusa.or.jp/rouge/gfpage/$id/"
|
|
1023
|
+
end
|
|
1024
|
+
|
|
1025
|
+
def self.cgsc
|
|
1026
|
+
"http://cgsc.biology.yale.edu/Site.php?ID=$id"
|
|
1027
|
+
end
|
|
1028
|
+
|
|
1029
|
+
def self.cog
|
|
1030
|
+
"http://www.ncbi.nlm.nih.gov/COG/grace/cogenome.cgi?g=$id"
|
|
1031
|
+
end
|
|
1032
|
+
|
|
1033
|
+
def self.dragondb_dna
|
|
1034
|
+
"http://antirrhinum.net/cgi-bin/ace/generic/seq/DragonDB?name=$id;class=Sequence"
|
|
1035
|
+
end
|
|
1036
|
+
|
|
1037
|
+
def self.dragondb_protein
|
|
1038
|
+
"http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Peptide"
|
|
1039
|
+
end
|
|
1040
|
+
|
|
1041
|
+
def self.dragondb_locus
|
|
1042
|
+
"http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Locus"
|
|
1043
|
+
end
|
|
1044
|
+
|
|
1045
|
+
def self.dragondb_allele
|
|
1046
|
+
"http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Allele"
|
|
1047
|
+
end
|
|
1048
|
+
|
|
1049
|
+
def self.nasc
|
|
1050
|
+
"http://arabidopsis.info/StockInfo?NASC_id=$id"
|
|
1051
|
+
end
|
|
1052
|
+
|
|
1053
|
+
def self.niaest
|
|
1054
|
+
"http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$id"
|
|
1055
|
+
end
|
|
1056
|
+
|
|
1057
|
+
def self.pazar
|
|
1058
|
+
"http://www.pazar.info/cgi-bin/tf_search.cgi?searchtab=tfs&ID_list=PAZAR_TF&geneID=$id"
|
|
1059
|
+
end
|
|
1060
|
+
|
|
1061
|
+
def self.po
|
|
1062
|
+
"http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=$id"
|
|
1063
|
+
end
|
|
1064
|
+
|
|
1065
|
+
def self.rnamods
|
|
1066
|
+
"http://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?$id"
|
|
1067
|
+
end
|
|
1068
|
+
|
|
1069
|
+
def self.treebase
|
|
1070
|
+
"http://www.treebase.org/treebase-web/search/study/summary.html?id=$id"
|
|
1071
|
+
end
|
|
1072
|
+
|
|
1073
|
+
def self.cmr
|
|
1074
|
+
"http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenePage.cgi?locus=$id"
|
|
1075
|
+
end
|
|
1076
|
+
|
|
1077
|
+
def self.tigrfams
|
|
1078
|
+
"http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=$id"
|
|
1079
|
+
end
|
|
1080
|
+
|
|
1081
|
+
def self.iuphar_family
|
|
1082
|
+
"http://www.iuphar-db.org/DATABASE/FamilyIntroductionForward?familyId=$id"
|
|
1083
|
+
end
|
|
1084
|
+
|
|
1085
|
+
def self.mgiid
|
|
1086
|
+
"http://www.fp.ucalgary.ca/group2introns/$id.htm"
|
|
1087
|
+
end
|
|
1088
|
+
|
|
1089
|
+
def self.vbase2
|
|
1090
|
+
"http://www.vbase2.org/vgene.php?id=$id"
|
|
1091
|
+
end
|
|
1092
|
+
|
|
1093
|
+
def self.genecards
|
|
1094
|
+
"http://www.genecards.org/cgi-bin/carddisp.pl?gene=$id"
|
|
1095
|
+
end
|
|
1096
|
+
|
|
1097
|
+
def self.allergome
|
|
1098
|
+
"http://www.allergome.org/script/refArray_view.php?idMol=$id"
|
|
1099
|
+
end
|
|
1100
|
+
|
|
1101
|
+
def self.hpa
|
|
1102
|
+
"http://www.proteinatlas.org/gene_info.php?ensembl_gene_id=$id"
|
|
1103
|
+
end
|
|
1104
|
+
|
|
1105
|
+
def self.tarbase
|
|
1106
|
+
"http://diana.cslab.ece.ntua.gr/DianaToolsNew/index.php?r=tarbase/index&mirnas=$id"
|
|
1107
|
+
end
|
|
1108
|
+
|
|
1109
|
+
def self.ncbi_protein
|
|
1110
|
+
"http://www.ncbi.nlm.nih.gov/protein/$id"
|
|
1111
|
+
end
|
|
1112
|
+
|
|
1113
|
+
def self.unigene
|
|
1114
|
+
"http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$id"
|
|
1115
|
+
end
|
|
1116
|
+
|
|
1117
|
+
def self.unite
|
|
1118
|
+
"http://unite.ut.ee/bl_forw.php?nimi=$id"
|
|
1119
|
+
end
|
|
1120
|
+
|
|
1121
|
+
def self.nucleardb
|
|
1122
|
+
"http://www.receptors.org/NR/seq/DR/$id.html"
|
|
1123
|
+
end
|
|
1124
|
+
|
|
1125
|
+
def self.superfamily
|
|
1126
|
+
"http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=$id"
|
|
1127
|
+
end
|
|
1128
|
+
|
|
1129
|
+
def self.rgap
|
|
1130
|
+
"http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$id"
|
|
1131
|
+
end
|
|
1132
|
+
|
|
1133
|
+
def self.panther_pathway
|
|
1134
|
+
"http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$id"
|
|
1135
|
+
end
|
|
1136
|
+
|
|
1137
|
+
def self.oridb
|
|
1138
|
+
"http://www.oridb.org/details1.php?id=$id"
|
|
1139
|
+
end
|
|
1140
|
+
|
|
1141
|
+
def self.ena
|
|
1142
|
+
"http://www.ebi.ac.uk/ena/data/view/$id"
|
|
1143
|
+
end
|
|
1144
|
+
|
|
1145
|
+
def self.ccds
|
|
1146
|
+
"http://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$id"
|
|
1147
|
+
end
|
|
1148
|
+
|
|
1149
|
+
def self.gxa
|
|
1150
|
+
"http://www.ebi.ac.uk/gxa/gene/$id"
|
|
1151
|
+
end
|
|
1152
|
+
|
|
1153
|
+
def self.wikipedia
|
|
1154
|
+
"http://en.wikipedia.org/wiki/$id"
|
|
1155
|
+
end
|
|
1156
|
+
|
|
1157
|
+
def self.intenz
|
|
1158
|
+
"http://www.ebi.ac.uk/intenz/query?cmd=SearchID&id=$id"
|
|
1159
|
+
end
|
|
1160
|
+
|
|
1161
|
+
def self.uniprot_taxonomy
|
|
1162
|
+
"http://www.uniprot.org/taxonomy/$id"
|
|
1163
|
+
end
|
|
1164
|
+
|
|
1165
|
+
def self.citexplore
|
|
1166
|
+
"http://www.ebi.ac.uk/citexplore/citationDetails.do?dataSource=MED&externalId=$id"
|
|
1167
|
+
end
|
|
1168
|
+
|
|
1169
|
+
def self.pdbe
|
|
1170
|
+
"http://www.pdbe.org/$id"
|
|
1171
|
+
end
|
|
1172
|
+
|
|
1173
|
+
def self.embl
|
|
1174
|
+
"http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+EntryPage+-e+[EMBL:$id]+-view+EmblEntry"
|
|
1175
|
+
end
|
|
1176
|
+
|
|
1177
|
+
def self.genbank
|
|
1178
|
+
"http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id"
|
|
1179
|
+
end
|
|
1180
|
+
|
|
1181
|
+
def self.hubmed
|
|
1182
|
+
"http://www.hubmed.org/display.cgi?uids=$id"
|
|
1183
|
+
end
|
|
1184
|
+
|
|
1185
|
+
def self.ddbj
|
|
1186
|
+
"http://xml.ddbj.nig.ac.jp/rest/Invoke?service=GetEntry&method=getDDBJEntry&accession=$id"
|
|
1187
|
+
end
|
|
1188
|
+
|
|
1189
|
+
def self.pdbj
|
|
1190
|
+
"http://service.pdbj.org/mine/Detail?PDBID=$id&PAGEID=Summary"
|
|
1191
|
+
end
|
|
1192
|
+
|
|
1193
|
+
def self.pdbsum
|
|
1194
|
+
"http://www.ebi.ac.uk/pdbsum/$id"
|
|
1195
|
+
end
|
|
1196
|
+
|
|
1197
|
+
def self.a_3did
|
|
1198
|
+
"http://3did.irbbarcelona.org/cgi-bin/query_domain_cgi.pl?domain=$id"
|
|
1199
|
+
end
|
|
1200
|
+
|
|
1201
|
+
def self.a_4dxpress
|
|
1202
|
+
"http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$id"
|
|
1203
|
+
end
|
|
1204
|
+
|
|
1205
|
+
def self.aaindex
|
|
1206
|
+
"http://www.genome.jp/dbget-bin/www_bget?aaindex:$id"
|
|
1207
|
+
end
|
|
1208
|
+
|
|
1209
|
+
def self.adda
|
|
1210
|
+
"http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb/report_sequence?nid=$id"
|
|
1211
|
+
end
|
|
1212
|
+
|
|
1213
|
+
def self.adw
|
|
1214
|
+
"http://animaldiversity.ummz.umich.edu/site/accounts/information/$id.html"
|
|
1215
|
+
end
|
|
1216
|
+
|
|
1217
|
+
def self.agbase
|
|
1218
|
+
"http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB&gb_acc=$id"
|
|
1219
|
+
end
|
|
1220
|
+
|
|
1221
|
+
def self.agsd
|
|
1222
|
+
"http://www.genomesize.com/result_species.php?id=$id"
|
|
1223
|
+
end
|
|
1224
|
+
|
|
1225
|
+
def self.alfred
|
|
1226
|
+
"http://alfred.med.yale.edu/alfred/recordinfo.asp?condition=loci.locus_uid='$id"
|
|
1227
|
+
end
|
|
1228
|
+
|
|
1229
|
+
def self.alterorf
|
|
1230
|
+
"http://www.alterorf.cl/SearchResults/SearchResult.aspx?variable1=$id"
|
|
1231
|
+
end
|
|
1232
|
+
|
|
1233
|
+
def self.alzgene
|
|
1234
|
+
"http://www.alzgene.org/geneoverview.asp?geneid=$id"
|
|
1235
|
+
end
|
|
1236
|
+
|
|
1237
|
+
def self.anobase
|
|
1238
|
+
"http://www.anobase.org/genetool/v42/gene.php?id=$id"
|
|
1239
|
+
end
|
|
1240
|
+
|
|
1241
|
+
def self.antijen
|
|
1242
|
+
"http://www.darrenflower.info/scripts/aj_scripts/aj_mhccalc2.pl?epitope=$id&AL=%25&ST=%25&CAT=MHC&detailinfo=no&detailmin=&detailmax="
|
|
1243
|
+
end
|
|
1244
|
+
|
|
1245
|
+
def self.aogacioah
|
|
1246
|
+
"http://atlasgeneticsoncology.org/Genes/$id.html"
|
|
1247
|
+
end
|
|
1248
|
+
|
|
1249
|
+
def self.aphidbase
|
|
1250
|
+
"http://helico.genouest.org:8080/grs-1.8/grs?reportID=chado_[transcript/genome/protein]_report&objectID=$id"
|
|
1251
|
+
end
|
|
1252
|
+
|
|
1253
|
+
def self.aracxyls
|
|
1254
|
+
"http://www.eez.csic.es/arac-xyls/wfichas/$idrec.htm"
|
|
1255
|
+
end
|
|
1256
|
+
|
|
1257
|
+
def self.archdb
|
|
1258
|
+
"http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$id"
|
|
1259
|
+
end
|
|
1260
|
+
|
|
1261
|
+
def self.ardb
|
|
1262
|
+
"http://ardb.cbcb.umd.edu/cgi/ssquery.cgi?db=T&ab=0&and1=A&ge=0&and2=A&sp=0&and3=A&gn=$id"
|
|
1263
|
+
end
|
|
1264
|
+
|
|
1265
|
+
def self.arkdb
|
|
1266
|
+
"http://www.thearkdb.org/arkdb/do/getMappableDetails?accession=$id"
|
|
1267
|
+
end
|
|
1268
|
+
|
|
1269
|
+
def self.artadedb
|
|
1270
|
+
"http://omicspace.riken.jp/gps/index.html?url=/gps/LineMode/ArtadeSearch_Flower&hCheck=v200307&hHead=[?genomic_region]&highlight=$id"
|
|
1271
|
+
end
|
|
1272
|
+
|
|
1273
|
+
def self.asalps
|
|
1274
|
+
"http://as-alps.nagahama-i-bio.ac.jp/search.php?sp=hs&switch=cluster&id_type=transcript&id=$id"
|
|
1275
|
+
end
|
|
1276
|
+
|
|
1277
|
+
def self.asrp
|
|
1278
|
+
"http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$id"
|
|
1279
|
+
end
|
|
1280
|
+
|
|
1281
|
+
def self.astd
|
|
1282
|
+
"http://www.ebi.ac.uk/astd/geneview.html?acc=$id"
|
|
1283
|
+
end
|
|
1284
|
+
|
|
1285
|
+
def self.atpid
|
|
1286
|
+
"http://atpid.biosino.org/simple_detail.php?pro=$id"
|
|
1287
|
+
end
|
|
1288
|
+
|
|
1289
|
+
def self.attedii
|
|
1290
|
+
"http://atted.jp/data/cis/$id.html"
|
|
1291
|
+
end
|
|
1292
|
+
|
|
1293
|
+
def self.autdb
|
|
1294
|
+
"http://autism.mindspec.org/autdb/TableDetails.do?tableName=AUT_CANDIDATE_GENES&keyVal=$id"
|
|
1295
|
+
end
|
|
1296
|
+
|
|
1297
|
+
def self.bacmap
|
|
1298
|
+
"http://wishart.biology.ualberta.ca/BacMap/cgview_linked_maps/$id/index.html"
|
|
1299
|
+
end
|
|
1300
|
+
|
|
1301
|
+
def self.bacteriome
|
|
1302
|
+
"http://www.compsysbio.org/bacteriome/tsdetail.php?cutoff=50&genestr=$id&genenum=0"
|
|
1303
|
+
end
|
|
1304
|
+
|
|
1305
|
+
def self.bactibase
|
|
1306
|
+
"http://bactibase.pfba-lab-tun.org/$id"
|
|
1307
|
+
end
|
|
1308
|
+
|
|
1309
|
+
def self.balibase
|
|
1310
|
+
"http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ref[$ref]/test/$id_ref[$ref].html"
|
|
1311
|
+
end
|
|
1312
|
+
|
|
1313
|
+
def self.bbid
|
|
1314
|
+
"http://bbid.grc.nia.nih.gov/geneimages/$id.jpeg"
|
|
1315
|
+
end
|
|
1316
|
+
|
|
1317
|
+
def self.benchmark
|
|
1318
|
+
"http://net.icgeb.org/benchmark/index.php?experiment=$id"
|
|
1319
|
+
end
|
|
1320
|
+
|
|
1321
|
+
def self.bged
|
|
1322
|
+
"http://genome.mc.pref.osaka.jp/cgi-bin/BGED/Gene_info.pl?num=$id"
|
|
1323
|
+
end
|
|
1324
|
+
|
|
1325
|
+
def self.bgee
|
|
1326
|
+
"http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id"
|
|
1327
|
+
end
|
|
1328
|
+
|
|
1329
|
+
def self.bgee_genes
|
|
1330
|
+
"http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id"
|
|
1331
|
+
end
|
|
1332
|
+
|
|
1333
|
+
def self.bgee_organ
|
|
1334
|
+
"http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=$id"
|
|
1335
|
+
end
|
|
1336
|
+
|
|
1337
|
+
def self.bid
|
|
1338
|
+
"http://tsailab.org/wikiBID/index.php/$id"
|
|
1339
|
+
end
|
|
1340
|
+
|
|
1341
|
+
def self.binding_moad
|
|
1342
|
+
"http://www.bindingmoad.org/moad/getMoadlet.do?id=$id"
|
|
1343
|
+
end
|
|
1344
|
+
|
|
1345
|
+
def self.biomagresbank
|
|
1346
|
+
"http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$id"
|
|
1347
|
+
end
|
|
1348
|
+
|
|
1349
|
+
def self.bionemo
|
|
1350
|
+
"http://bionemo.bioinfo.cnio.es/Run.cgi?rm=mode4&result=$id"
|
|
1351
|
+
end
|
|
1352
|
+
|
|
1353
|
+
def self.biopax_l2
|
|
1354
|
+
"http://www.biopax.org/release/biopax-level2.owl#$id"
|
|
1355
|
+
end
|
|
1356
|
+
|
|
1357
|
+
def self.biopax_l3
|
|
1358
|
+
"http://www.biopax.org/release/biopax-level3.owl#$id"
|
|
1359
|
+
end
|
|
1360
|
+
|
|
1361
|
+
def self.biopixie
|
|
1362
|
+
"http://avis.princeton.edu/pixie/viewgraph.php?graphID=$id"
|
|
1363
|
+
end
|
|
1364
|
+
|
|
1365
|
+
def self.biozon
|
|
1366
|
+
"http://biozon.org/Biozon/Profile/$id"
|
|
1367
|
+
end
|
|
1368
|
+
|
|
1369
|
+
def self.bmph
|
|
1370
|
+
"http://www.expasy.org/cgi-bin/show_image?$id"
|
|
1371
|
+
end
|
|
1372
|
+
|
|
1373
|
+
def self.bodymap
|
|
1374
|
+
"http://bodymap.ims.u-tokyo.ac.jp/[?human/mouse]/gs_card.php?gs=$id"
|
|
1375
|
+
end
|
|
1376
|
+
|
|
1377
|
+
def self.bps
|
|
1378
|
+
"http://bps.rutgers.edu/atlas/bp_record/$id"
|
|
1379
|
+
end
|
|
1380
|
+
|
|
1381
|
+
def self.bsd
|
|
1382
|
+
"http://bsd.cme.msu.edu/jsp/InfoController.jsp?object=Strain&id=S_$id"
|
|
1383
|
+
end
|
|
1384
|
+
|
|
1385
|
+
def self.bsorf
|
|
1386
|
+
"http://bacillus.genome.jp/cgi-bin/BSORF_data_view.pl?ACCESSION=$id"
|
|
1387
|
+
end
|
|
1388
|
+
|
|
1389
|
+
def self.buchnerabase
|
|
1390
|
+
"http://www.york.ac.uk/res/thomas/Buchnerabase/resources/gene_page_aps.cfm?BBnum=$id"
|
|
1391
|
+
end
|
|
1392
|
+
|
|
1393
|
+
def self.cage_ctss
|
|
1394
|
+
"http://fantom31p.gsc.riken.jp/cage/mm5/SummaryCtss.php?ctss_id=$id"
|
|
1395
|
+
end
|
|
1396
|
+
|
|
1397
|
+
def self.cage_library
|
|
1398
|
+
"http://fantom31p.gsc.riken.jp/cage/mm5/SummaryLibrary.php?libid=$id"
|
|
1399
|
+
end
|
|
1400
|
+
|
|
1401
|
+
def self.cage_tc
|
|
1402
|
+
"http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTss.php?tss_id=$id"
|
|
1403
|
+
end
|
|
1404
|
+
|
|
1405
|
+
def self.cage_tu
|
|
1406
|
+
"http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTu.php?tu_id=$id"
|
|
1407
|
+
end
|
|
1408
|
+
|
|
1409
|
+
def self.cancergenes
|
|
1410
|
+
"http://cbio.mskcc.org/Public/products/human_mapped/Mapback_html/$id.html"
|
|
1411
|
+
end
|
|
1412
|
+
|
|
1413
|
+
def self.cangem
|
|
1414
|
+
"http://www.cangem.org/index.php?gene=$id"
|
|
1415
|
+
end
|
|
1416
|
+
|
|
1417
|
+
def self.carpedb_gene
|
|
1418
|
+
"http://www.carpedb.ua.edu/summary.cfm?id=$id"
|
|
1419
|
+
end
|
|
1420
|
+
|
|
1421
|
+
def self.carpedb_reference
|
|
1422
|
+
"http://www.carpedb.ua.edu/public.cfm?id=$id"
|
|
1423
|
+
end
|
|
1424
|
+
|
|
1425
|
+
def self.catdb
|
|
1426
|
+
"http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_project.pl?project_id=$id"
|
|
1427
|
+
end
|
|
1428
|
+
|
|
1429
|
+
def self.cattleqtldb
|
|
1430
|
+
"http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$id"
|
|
1431
|
+
end
|
|
1432
|
+
|
|
1433
|
+
def self.ccm
|
|
1434
|
+
"http://cancer.cellmap.org/cellmap/record.do?id=$id"
|
|
1435
|
+
end
|
|
1436
|
+
|
|
1437
|
+
def self.cged
|
|
1438
|
+
"http://lifesciencedb.jp/cgi-bin/cged/detail.cgi?ci=3&cg=$id"
|
|
1439
|
+
end
|
|
1440
|
+
|
|
1441
|
+
def self.cgnc
|
|
1442
|
+
"http://www.agnc.msstate.edu/GeneReport.aspx?a=$id"
|
|
1443
|
+
end
|
|
1444
|
+
|
|
1445
|
+
def self.chembl
|
|
1446
|
+
"https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id"
|
|
1447
|
+
end
|
|
1448
|
+
|
|
1449
|
+
def self.chickenqtldb
|
|
1450
|
+
"http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$id"
|
|
1451
|
+
end
|
|
1452
|
+
|
|
1453
|
+
def self.chickvd
|
|
1454
|
+
"http://chicken.genomics.org.cn/chicken/jsp/gene_report.jsp?gene_id=$id"
|
|
1455
|
+
end
|
|
1456
|
+
|
|
1457
|
+
def self.chromdb
|
|
1458
|
+
"http://www.chromdb.org/gene_record.html?g=$id"
|
|
1459
|
+
end
|
|
1460
|
+
|
|
1461
|
+
def self.cid
|
|
1462
|
+
"http://oxytricha.princeton.edu/cgi-bin/get_MDS_IES_Info.cgi?num=$id"
|
|
1463
|
+
end
|
|
1464
|
+
|
|
1465
|
+
def self.cisred
|
|
1466
|
+
"http://www.cisred.org/[?species]/gene_view?ensembl_id=$id"
|
|
1467
|
+
end
|
|
1468
|
+
|
|
1469
|
+
def self.cleanest
|
|
1470
|
+
"http://verdi.kobic.re.kr/cleanEST/library_view.jsp?libid=$id"
|
|
1471
|
+
end
|
|
1472
|
+
|
|
1473
|
+
def self.cleanex
|
|
1474
|
+
"http://www.cleanex.isb-sib.ch/cgi-bin/get_doc?db=cleanex&format=nice&entry=$id"
|
|
1475
|
+
end
|
|
1476
|
+
|
|
1477
|
+
def self.clibe
|
|
1478
|
+
"http://bidd.nus.edu.sg/group/CLiBE/Detail.asp?ID=$id"
|
|
1479
|
+
end
|
|
1480
|
+
|
|
1481
|
+
def self.cmd
|
|
1482
|
+
"https://eds.gene.le.ac.uk/home.php?select_db=$id"
|
|
1483
|
+
end
|
|
1484
|
+
|
|
1485
|
+
def self.cmgsdb_chain
|
|
1486
|
+
"https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewChain.php?chainid=$id"
|
|
1487
|
+
end
|
|
1488
|
+
|
|
1489
|
+
def self.cmgsdb_exp
|
|
1490
|
+
"https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/rnaiexpt.php?expt=$id"
|
|
1491
|
+
end
|
|
1492
|
+
|
|
1493
|
+
def self.cmgsdb_gene
|
|
1494
|
+
"https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewGene.php?wbgene=$id"
|
|
1495
|
+
end
|
|
1496
|
+
|
|
1497
|
+
def self.cmgsdb_protein
|
|
1498
|
+
"https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewProtein.php?wpid=$id"
|
|
1499
|
+
end
|
|
1500
|
+
|
|
1501
|
+
def self.cnidbase
|
|
1502
|
+
"http://cnidbase.com/index.cgi?cn_accession=$id"
|
|
1503
|
+
end
|
|
1504
|
+
|
|
1505
|
+
def self.cno
|
|
1506
|
+
"http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#$id"
|
|
1507
|
+
end
|
|
1508
|
+
|
|
1509
|
+
def self.cogat
|
|
1510
|
+
"http://www.cognitiveatlas.org/ontology/cogat.owl#$id"
|
|
1511
|
+
end
|
|
1512
|
+
|
|
1513
|
+
def self.cogeme
|
|
1514
|
+
"http://cogeme.ex.ac.uk/cgi-bin/uni.pl?uni=$id"
|
|
1515
|
+
end
|
|
1516
|
+
|
|
1517
|
+
def self.come
|
|
1518
|
+
"http://www.flymine.org/come/entry?gn=$id"
|
|
1519
|
+
end
|
|
1520
|
+
|
|
1521
|
+
def self.comparative_genometrics
|
|
1522
|
+
"http://www2.unil.ch/comparativegenometrics/$id.htm"
|
|
1523
|
+
end
|
|
1524
|
+
|
|
1525
|
+
def self.compluyeast2dpage
|
|
1526
|
+
"http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id"
|
|
1527
|
+
end
|
|
1528
|
+
|
|
1529
|
+
def self.consurfdb
|
|
1530
|
+
"http://consurfdb.tau.ac.il/consurf_db/$id/[?chain_id]/"
|
|
1531
|
+
end
|
|
1532
|
+
|
|
1533
|
+
def self.cope
|
|
1534
|
+
"http://www.copewithcytokines.de/cope.cgi?key=$id"
|
|
1535
|
+
end
|
|
1536
|
+
|
|
1537
|
+
def self.corg
|
|
1538
|
+
"http://corg.eb.tuebingen.mpg.de/cgi-bin/get_gene_info_v38.pl?id=$id&species=[?species_name]&version=v38"
|
|
1539
|
+
end
|
|
1540
|
+
|
|
1541
|
+
def self.corum
|
|
1542
|
+
"http://mips.helmholtz-muenchen.de/genre/proj/corum/complexdetails.html?id=$id"
|
|
1543
|
+
end
|
|
1544
|
+
|
|
1545
|
+
def self.cosmic
|
|
1546
|
+
"http://www.sanger.ac.uk/perl/genetics/CGP/cosmic?action=byhist&s=4&hn=carcinoma&sn=ovary&ln=$id"
|
|
1547
|
+
end
|
|
1548
|
+
|
|
1549
|
+
def self.coxpresdb
|
|
1550
|
+
"http://coxpresdb.jp/tis_map/$id/"
|
|
1551
|
+
end
|
|
1552
|
+
|
|
1553
|
+
def self.cpndb
|
|
1554
|
+
"http://cpndb.cbr.nrc.ca/getRecord.php?id=$id"
|
|
1555
|
+
end
|
|
1556
|
+
|
|
1557
|
+
def self.cpo
|
|
1558
|
+
"http://phenomebrowser.net/cellphenotype.owl#$id"
|
|
1559
|
+
end
|
|
1560
|
+
|
|
1561
|
+
def self.cpr
|
|
1562
|
+
"http://purl.org/cpr/$id"
|
|
1563
|
+
end
|
|
1564
|
+
|
|
1565
|
+
def self.csrd
|
|
1566
|
+
"http://sundarlab.ucdavis.edu/cgi-bin/smrna_browse/?name=$id"
|
|
1567
|
+
end
|
|
1568
|
+
|
|
1569
|
+
def self.cst
|
|
1570
|
+
"http://www.cellsignal.com/products/$id.html"
|
|
1571
|
+
end
|
|
1572
|
+
|
|
1573
|
+
def self.ctad
|
|
1574
|
+
"http://www.cta.lncc.br/modelo.php?idgene=$id&idmeta=11"
|
|
1575
|
+
end
|
|
1576
|
+
|
|
1577
|
+
def self.ctcae
|
|
1578
|
+
"http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae.owl#$id"
|
|
1579
|
+
end
|
|
1580
|
+
|
|
1581
|
+
def self.ctga
|
|
1582
|
+
"http://www.cags.org.ae/FMPro?-db=ctga.fp5&-format=/ctga/ctga_detail.html&-lay=main&Record_Category=Gene%20locus&-max=30&-recid=$id&-find="
|
|
1583
|
+
end
|
|
1584
|
+
|
|
1585
|
+
def self.cutdb
|
|
1586
|
+
"http://cutdb.burnham.org/relation/show/$id"
|
|
1587
|
+
end
|
|
1588
|
+
|
|
1589
|
+
def self.cutg
|
|
1590
|
+
"http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$id"
|
|
1591
|
+
end
|
|
1592
|
+
|
|
1593
|
+
def self.cyanobase
|
|
1594
|
+
"http://genome.kazusa.or.jp/cyanobase/Synechocystis/genes/$id"
|
|
1595
|
+
end
|
|
1596
|
+
|
|
1597
|
+
def self.cybase
|
|
1598
|
+
"http://research1t.imb.uq.edu.au/cybase/index.php?page=card&table=protein&id=$id"
|
|
1599
|
+
end
|
|
1600
|
+
|
|
1601
|
+
def self.cyclebase
|
|
1602
|
+
"http://www.cyclebase.org/displaygene.action?geneName=$id&taxId=[$taxid]"
|
|
1603
|
+
end
|
|
1604
|
+
|
|
1605
|
+
def self.dali
|
|
1606
|
+
"http://ekhidna.biocenter.helsinki.fi/dali_server/results/$id/index.html"
|
|
1607
|
+
end
|
|
1608
|
+
|
|
1609
|
+
def self.dart
|
|
1610
|
+
"http://xin.cz3.nus.edu.sg/group/DRT/Detail.asp?ID=$id"
|
|
1611
|
+
end
|
|
1612
|
+
|
|
1613
|
+
def self.datf
|
|
1614
|
+
"http://datf.cbi.pku.edu.cn/entry-display.php?id=$id"
|
|
1615
|
+
end
|
|
1616
|
+
|
|
1617
|
+
def self.dbd
|
|
1618
|
+
"http://dbd.mrc-lmb.cam.ac.uk/DBD/index.cgi?Search/Domain+domain:$id"
|
|
1619
|
+
end
|
|
1620
|
+
|
|
1621
|
+
def self.dbpabp
|
|
1622
|
+
"http://ppa.bcf.ku.edu/DB_PABP/protein_details.jsp?prot_id=$id"
|
|
1623
|
+
end
|
|
1624
|
+
|
|
1625
|
+
def self.dbpedia
|
|
1626
|
+
"http://dbpedia.org/page/$id"
|
|
1627
|
+
end
|
|
1628
|
+
|
|
1629
|
+
def self.dbptm
|
|
1630
|
+
"http://dbptm.mbc.nctu.edu.tw/search_result.php?search_type=seq&swiss_id=$id"
|
|
1631
|
+
end
|
|
1632
|
+
|
|
1633
|
+
def self.dbres
|
|
1634
|
+
"http://bioinfo.au.tsinghua.edu.cn/dbRES/show_record.php?resid=$id"
|
|
1635
|
+
end
|
|
1636
|
+
|
|
1637
|
+
def self.dbtgr
|
|
1638
|
+
"http://dbtgr.hgc.jp/v2/id/$id"
|
|
1639
|
+
end
|
|
1640
|
+
|
|
1641
|
+
def self.dc
|
|
1642
|
+
"http://purl.org/dc/terms/$id"
|
|
1643
|
+
end
|
|
1644
|
+
|
|
1645
|
+
def self.dccp
|
|
1646
|
+
"http://sdbi.sdut.edu.cn/DCCP/en/Detail1D.php?id=$id"
|
|
1647
|
+
end
|
|
1648
|
+
|
|
1649
|
+
def self.ddoc
|
|
1650
|
+
"http://apps.sanbi.ac.za/ddoc/details_general.php?geneID=$id"
|
|
1651
|
+
end
|
|
1652
|
+
|
|
1653
|
+
def self.defensins_knowledgebase
|
|
1654
|
+
"http://defensins.bii.a-star.edu.sg/pops/pop_proteinDetails.php?id=$id"
|
|
1655
|
+
end
|
|
1656
|
+
|
|
1657
|
+
def self.dhaplodb
|
|
1658
|
+
"http://orca.gen.kyushu-u.ac.jp/cgi-bin/gbrowse/humanBuild35/?name=$id"
|
|
1659
|
+
end
|
|
1660
|
+
|
|
1661
|
+
def self.dictybase_ref
|
|
1662
|
+
"http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=$id"
|
|
1663
|
+
end
|
|
1664
|
+
|
|
1665
|
+
def self.dima
|
|
1666
|
+
"http://mips.helmholtz-muenchen.de/genre/proj/dima2/query/query.jsp?domain=$id"
|
|
1667
|
+
end
|
|
1668
|
+
|
|
1669
|
+
def self.domine
|
|
1670
|
+
"http://domine.utdallas.edu/cgi-bin/Domine?page=pfam&pfamid=$id"
|
|
1671
|
+
end
|
|
1672
|
+
|
|
1673
|
+
def self.domins
|
|
1674
|
+
"http://www.domins.org/cgi/pdbcode.pl?id=$id"
|
|
1675
|
+
end
|
|
1676
|
+
|
|
1677
|
+
def self.door
|
|
1678
|
+
"http://csbl1.bmb.uga.edu/OperonDB/genedetail.php?id=$id"
|
|
1679
|
+
end
|
|
1680
|
+
|
|
1681
|
+
def self.dosaccobs2dpage
|
|
1682
|
+
"http://www.dosac.unipa.it/cgi-bin/2d/2d.cgi?ac=$id"
|
|
1683
|
+
end
|
|
1684
|
+
|
|
1685
|
+
def self.dpd
|
|
1686
|
+
"http://dpdb.uab.es/cgi-bin/DPDB_s2.pl?Accession=$id"
|
|
1687
|
+
end
|
|
1688
|
+
|
|
1689
|
+
def self.dpinteract
|
|
1690
|
+
"http://arep.med.harvard.edu/ecoli_matrices/sco/$id.sco"
|
|
1691
|
+
end
|
|
1692
|
+
|
|
1693
|
+
def self.dpr
|
|
1694
|
+
"http://dnasu.asu.edu/DNASU/GetCloneDetail.do?cloneid=$id"
|
|
1695
|
+
end
|
|
1696
|
+
|
|
1697
|
+
def self.drospege
|
|
1698
|
+
"http://arthropods.eugenes.org/genepage/[?species_name]/$id]"
|
|
1699
|
+
end
|
|
1700
|
+
|
|
1701
|
+
def self.drtf
|
|
1702
|
+
"http://drtf.cbi.pku.edu.cn/gene_info.php?gn=$id"
|
|
1703
|
+
end
|
|
1704
|
+
|
|
1705
|
+
def self.ecocyc_compound
|
|
1706
|
+
"http://biocyc.org/ECOLI/NEW-IMAGE?type=COMPOUND&object=$id"
|
|
1707
|
+
end
|
|
1708
|
+
|
|
1709
|
+
def self.ecocyc_enzyme
|
|
1710
|
+
"http://biocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=$id"
|
|
1711
|
+
end
|
|
1712
|
+
|
|
1713
|
+
def self.ecocyc_gene
|
|
1714
|
+
"http://biocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=$id"
|
|
1715
|
+
end
|
|
1716
|
+
|
|
1717
|
+
def self.ecocyc_pathway
|
|
1718
|
+
"http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=$id"
|
|
1719
|
+
end
|
|
1720
|
+
|
|
1721
|
+
def self.ecocyc_reaction
|
|
1722
|
+
"http://biocyc.org/ECOLI/NEW-IMAGE?type=REACTION&object=$id"
|
|
1723
|
+
end
|
|
1724
|
+
|
|
1725
|
+
def self.ecocyc_ref
|
|
1726
|
+
"http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=$id"
|
|
1727
|
+
end
|
|
1728
|
+
|
|
1729
|
+
def self.ecoliwiki
|
|
1730
|
+
"http://ecoliwiki.net/colipedia/index.php/$id"
|
|
1731
|
+
end
|
|
1732
|
+
|
|
1733
|
+
def self.edas_human
|
|
1734
|
+
"http://edas2.bioinf.fbb.msu.ru/human/summary.cgi?gene_id=$id"
|
|
1735
|
+
end
|
|
1736
|
+
|
|
1737
|
+
def self.edas_mouse
|
|
1738
|
+
"http://edas2.bioinf.fbb.msu.ru/mouse/data.cgi?chromosome=$id"
|
|
1739
|
+
end
|
|
1740
|
+
|
|
1741
|
+
def self.efsite
|
|
1742
|
+
"http://ef-site.protein.osaka-u.ac.jp/eF-site/servlet/Summary?entry_id=$id"
|
|
1743
|
+
end
|
|
1744
|
+
|
|
1745
|
+
def self.ego
|
|
1746
|
+
"http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/ego/ego_report.pl?ego=$id"
|
|
1747
|
+
end
|
|
1748
|
+
|
|
1749
|
+
def self.emglib
|
|
1750
|
+
"http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=GenBank"
|
|
1751
|
+
end
|
|
1752
|
+
|
|
1753
|
+
def self.emim
|
|
1754
|
+
"http://discover.nci.nih.gov/mim/view.jsp?selection=map&MIM=$id"
|
|
1755
|
+
end
|
|
1756
|
+
|
|
1757
|
+
def self.endonet
|
|
1758
|
+
"http://endonet.bioinf.med.uni-goettingen.de/hormonedetail?id=$id"
|
|
1759
|
+
end
|
|
1760
|
+
|
|
1761
|
+
def self.enzyme
|
|
1762
|
+
"http://ca.expasy.org/enzyme/$id"
|
|
1763
|
+
end
|
|
1764
|
+
|
|
1765
|
+
def self.epcondb
|
|
1766
|
+
"http://www.cbil.upenn.edu/epcondb42/showRecord.do?name=TranscriptRecordClasses.TranscriptRecordClass&project_id=GenomicsBC&primary_key=$id"
|
|
1767
|
+
end
|
|
1768
|
+
|
|
1769
|
+
def self.epd
|
|
1770
|
+
"http://www.epd.isb-sib.ch/cgi-bin/get_doc?db=epd&format=nice&entry=$id"
|
|
1771
|
+
end
|
|
1772
|
+
|
|
1773
|
+
def self.epgd
|
|
1774
|
+
"http://epgd.biosino.org/EPGD/gene/geneinfor.jsp?geneID=$id"
|
|
1775
|
+
end
|
|
1776
|
+
|
|
1777
|
+
def self.erd
|
|
1778
|
+
"http://bioinformatics.psb.ugent.be/webtools/rRNA/[lsu/[ssu]/data/$id"
|
|
1779
|
+
end
|
|
1780
|
+
|
|
1781
|
+
def self.ergo
|
|
1782
|
+
"http://www.ergo-light.com/ERGO/CGI/prot.cgi?prot=$id"
|
|
1783
|
+
end
|
|
1784
|
+
|
|
1785
|
+
def self.ergr
|
|
1786
|
+
"http://bioinfo.vipbg.vcu.edu/ERGR/geneinfo.php?id=$id"
|
|
1787
|
+
end
|
|
1788
|
+
|
|
1789
|
+
def self.eropmoscow
|
|
1790
|
+
"http://erop.inbi.ras.ru/result2.php?PepName=$id"
|
|
1791
|
+
end
|
|
1792
|
+
|
|
1793
|
+
def self.esldb
|
|
1794
|
+
"http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$id"
|
|
1795
|
+
end
|
|
1796
|
+
|
|
1797
|
+
def self.esther
|
|
1798
|
+
"http://bioweb.ensam.inra.fr/ESTHER/family?name=$id&class=Family"
|
|
1799
|
+
end
|
|
1800
|
+
|
|
1801
|
+
def self.eugenes
|
|
1802
|
+
"http://eugenes.org:7072/.bin/fbidq.html?$id"
|
|
1803
|
+
end
|
|
1804
|
+
|
|
1805
|
+
def self.evoc
|
|
1806
|
+
"http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$id"
|
|
1807
|
+
end
|
|
1808
|
+
|
|
1809
|
+
def self.evola
|
|
1810
|
+
"http://www.h-invitational.jp/evola_main/annotation.cgi?hit=$id"
|
|
1811
|
+
end
|
|
1812
|
+
|
|
1813
|
+
def self.explorenz
|
|
1814
|
+
"http://www.enzyme-database.org/query.php?ec=$id"
|
|
1815
|
+
end
|
|
1816
|
+
|
|
1817
|
+
def self.eyesite
|
|
1818
|
+
"http://eyesite.cryst.bbk.ac.uk/cgi-bin/get_family_page.cgi?FAMILY=$id"
|
|
1819
|
+
end
|
|
1820
|
+
|
|
1821
|
+
def self.ezcatdb
|
|
1822
|
+
"http://mbs.cbrc.jp/EzCatDB/search/get.do?dbcode=$id"
|
|
1823
|
+
end
|
|
1824
|
+
|
|
1825
|
+
def self.fcp
|
|
1826
|
+
"http://cgl.imim.es/fcp/fcp.php?struct=1&compactId=EC.$id"
|
|
1827
|
+
end
|
|
1828
|
+
|
|
1829
|
+
def self.fgdb
|
|
1830
|
+
"http://mips.helmholtz-muenchen.de/genre/proj/FGDB/singleGeneReport.html?entry=$id"
|
|
1831
|
+
end
|
|
1832
|
+
|
|
1833
|
+
def self.firedb
|
|
1834
|
+
"http://firedb.bioinfo.cnio.es/Php/FireDB.php?pdbcode=$id"
|
|
1835
|
+
end
|
|
1836
|
+
|
|
1837
|
+
def self.flight
|
|
1838
|
+
"http://flight.licr.org/browse/view_rnai_hits.jsp?project_id=[$project_id]&screen_id=$id"
|
|
1839
|
+
end
|
|
1840
|
+
|
|
1841
|
+
def self.flymine
|
|
1842
|
+
"http://www.flymine.org/release-25.0/objectDetails.do?id=$id"
|
|
1843
|
+
end
|
|
1844
|
+
|
|
1845
|
+
def self.flytf
|
|
1846
|
+
"http://www.flytf.org/flytfmine/objectDetails.do?id=$id"
|
|
1847
|
+
end
|
|
1848
|
+
|
|
1849
|
+
def self.frnadb
|
|
1850
|
+
"http://www.ncrna.org/frnadb/detail.html?i_name=$id"
|
|
1851
|
+
end
|
|
1852
|
+
|
|
1853
|
+
def self.fugoid
|
|
1854
|
+
"http://fugoid.webhost.utexas.edu/introndata/full_display.cfm?intronID=$id"
|
|
1855
|
+
end
|
|
1856
|
+
|
|
1857
|
+
def self.funpep
|
|
1858
|
+
"http://swift.cmbi.kun.nl/swift/FUNPEP/gergo/$id/index.html"
|
|
1859
|
+
end
|
|
1860
|
+
|
|
1861
|
+
def self.gallus_gbrowse
|
|
1862
|
+
"http://birdbase.net/cgi-bin/gbrowse/gallus08/?name=$id"
|
|
1863
|
+
end
|
|
1864
|
+
|
|
1865
|
+
def self.gdfr_est
|
|
1866
|
+
"http://www.rosaceae.org/bio/content/?title=&url=http://www.rosaceae.org/cgi-bin/gdr/gdr_ESTGB.cgi?clone_name=$id"
|
|
1867
|
+
end
|
|
1868
|
+
|
|
1869
|
+
def self.gdfr_marker
|
|
1870
|
+
"http://www.rosaceae.org/bio/content/?title=&url=http://www.rosaceae.org/cgi-bin/gdr/gdr_marker.cgi?MName_Result=$id"
|
|
1871
|
+
end
|
|
1872
|
+
|
|
1873
|
+
def self.geisha
|
|
1874
|
+
"http://geisha.arizona.edu/geisha/search.jsp?gene=$id"
|
|
1875
|
+
end
|
|
1876
|
+
|
|
1877
|
+
def self.genage
|
|
1878
|
+
"http://genomics.senescence.info/genes/details.php?id=$id"
|
|
1879
|
+
end
|
|
1880
|
+
|
|
1881
|
+
def self.gendis
|
|
1882
|
+
"http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$id"
|
|
1883
|
+
end
|
|
1884
|
+
|
|
1885
|
+
def self.gendr
|
|
1886
|
+
"http://genomics.senescence.info/diet/details.php?id=$id"
|
|
1887
|
+
end
|
|
1888
|
+
|
|
1889
|
+
def self.geneloc
|
|
1890
|
+
"http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$id"
|
|
1891
|
+
end
|
|
1892
|
+
|
|
1893
|
+
def self.genenet
|
|
1894
|
+
"http://wwwmgs.bionet.nsc.ru/mgs/gnw/genenet/viewer/$id.html"
|
|
1895
|
+
end
|
|
1896
|
+
|
|
1897
|
+
def self.genenote
|
|
1898
|
+
"http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$id&data_type=norm2&results=yes"
|
|
1899
|
+
end
|
|
1900
|
+
|
|
1901
|
+
def self.genetrap
|
|
1902
|
+
"http://pokey.ibme.utoronto.ca/clone_report.php?id=$id"
|
|
1903
|
+
end
|
|
1904
|
+
|
|
1905
|
+
def self.genetrees
|
|
1906
|
+
"http://genetrees.vbi.vt.edu/GetAlignment?al=$id"
|
|
1907
|
+
end
|
|
1908
|
+
|
|
1909
|
+
def self.genolevures
|
|
1910
|
+
"http://www.genolevures.org/elt/$id"
|
|
1911
|
+
end
|
|
1912
|
+
|
|
1913
|
+
def self.genomereviews
|
|
1914
|
+
"http://www.ebi.ac.uk/integr8/OrganismSelection.do?action=makeCurrent&proteomeId=$id"
|
|
1915
|
+
end
|
|
1916
|
+
|
|
1917
|
+
def self.genomernai
|
|
1918
|
+
"http://rnai.dkfz.de/GenomeRNAi/genedetails/$id"
|
|
1919
|
+
end
|
|
1920
|
+
|
|
1921
|
+
def self.gensat
|
|
1922
|
+
"http://www.ncbi.nlm.nih.gov/sites/entrez?db=gensat&cmd=retrieve&list_uids=$id"
|
|
1923
|
+
end
|
|
1924
|
+
|
|
1925
|
+
def self.germonline_gene
|
|
1926
|
+
"http://www.germonline.org/Homo_sapiens/geneview?db=core;gene=$id"
|
|
1927
|
+
end
|
|
1928
|
+
|
|
1929
|
+
def self.germonline_marker
|
|
1930
|
+
"http://www.germonline.org/Homo_sapiens/markerview?marker=$id"
|
|
1931
|
+
end
|
|
1932
|
+
|
|
1933
|
+
def self.ghr
|
|
1934
|
+
"http://ghr.nlm.nih.gov/gene/$id"
|
|
1935
|
+
end
|
|
1936
|
+
|
|
1937
|
+
def self.gi
|
|
1938
|
+
"http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id"
|
|
1939
|
+
end
|
|
1940
|
+
|
|
1941
|
+
def self.gib
|
|
1942
|
+
"http://gib.genes.nig.ac.jp/single/index.php?spid=$id"
|
|
1943
|
+
end
|
|
1944
|
+
|
|
1945
|
+
def self.gissd
|
|
1946
|
+
"http://www.rna.whu.edu.cn/perl/gissd/get_seq_exon.cgi?intron_id=$id"
|
|
1947
|
+
end
|
|
1948
|
+
|
|
1949
|
+
def self.glycomapsdb
|
|
1950
|
+
"http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$id"
|
|
1951
|
+
end
|
|
1952
|
+
|
|
1953
|
+
def self.glyconavi
|
|
1954
|
+
"http://ws.glyconavi.org/DbDetail/moldetail.aspx?moleculeID=$id"
|
|
1955
|
+
end
|
|
1956
|
+
|
|
1957
|
+
def self.gnd
|
|
1958
|
+
"http://nava.liacs.nl/cgi-bin/nava.py?id=$id"
|
|
1959
|
+
end
|
|
1960
|
+
|
|
1961
|
+
def self.gold
|
|
1962
|
+
"http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$id"
|
|
1963
|
+
end
|
|
1964
|
+
|
|
1965
|
+
def self.gopad
|
|
1966
|
+
"http://bcl.med.harvard.edu/proteomics/proj/gopart/gopart_all_tbl_view_detail_list.php?masterkey=$id"
|
|
1967
|
+
end
|
|
1968
|
+
|
|
1969
|
+
def self.gp
|
|
1970
|
+
"http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=$id"
|
|
1971
|
+
end
|
|
1972
|
+
|
|
1973
|
+
def self.gpxmacrophage
|
|
1974
|
+
"http://gpxmea.gti.ed.ac.uk/GPX/cgi-bin/Scripts/showexperiment.cgi?HID=$id"
|
|
1975
|
+
end
|
|
1976
|
+
|
|
1977
|
+
def self.gramene_po
|
|
1978
|
+
"http://www.gramene.org/db/ontology/search?id=$id"
|
|
1979
|
+
end
|
|
1980
|
+
|
|
1981
|
+
def self.gramene_ref
|
|
1982
|
+
"http://www.gramene.org/db/literature/pub_search?ref_id=$id"
|
|
1983
|
+
end
|
|
1984
|
+
|
|
1985
|
+
def self.greenphyldb
|
|
1986
|
+
"http://greenphyl.cirad.fr/v2/cgi-bin/family.cgi?id=$id"
|
|
1987
|
+
end
|
|
1988
|
+
|
|
1989
|
+
def self.grin
|
|
1990
|
+
"http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$id"
|
|
1991
|
+
end
|
|
1992
|
+
|
|
1993
|
+
def self.grsdb
|
|
1994
|
+
"http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$id"
|
|
1995
|
+
end
|
|
1996
|
+
|
|
1997
|
+
def self.gtop
|
|
1998
|
+
"http://spock.genes.nig.ac.jp/~genome/cgi-bin/mas.pl.cgi?org=[?species]&gene=$id"
|
|
1999
|
+
end
|
|
2000
|
+
|
|
2001
|
+
def self.gtrdb
|
|
2002
|
+
"http://gtrnadb.ucsc.edu/$id"
|
|
2003
|
+
end
|
|
2004
|
+
|
|
2005
|
+
def self.gxd
|
|
2006
|
+
"http://gbrowse.informatics.jax.org/cgi-bin/gbrowse/mouse_current/?name=$id"
|
|
2007
|
+
end
|
|
2008
|
+
|
|
2009
|
+
def self.hagr
|
|
2010
|
+
"http://genomics.senescence.info/genes/entry.php?hgnc=$id"
|
|
2011
|
+
end
|
|
2012
|
+
|
|
2013
|
+
def self.hapmap
|
|
2014
|
+
"http://snp.cshl.org/cgi-perl/gbrowse/hapmap27_B36/?name=$id"
|
|
2015
|
+
end
|
|
2016
|
+
|
|
2017
|
+
def self.hbvar
|
|
2018
|
+
"http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$id"
|
|
2019
|
+
end
|
|
2020
|
+
|
|
2021
|
+
def self.hc
|
|
2022
|
+
"http://www.mesquiteproject.org/ontology/Habronattus/$id.html"
|
|
2023
|
+
end
|
|
2024
|
+
|
|
2025
|
+
def self.hcnet
|
|
2026
|
+
"http://sbrg2.gist.ac.kr/hcnet/ver1.1/php/showDetailGeneInfo.php?unigeneID=$id"
|
|
2027
|
+
end
|
|
2028
|
+
|
|
2029
|
+
def self.hcpin
|
|
2030
|
+
"http://nesg.org:9090/HCPIN/NShowProteinInfor.jsp?protein_id=$id"
|
|
2031
|
+
end
|
|
2032
|
+
|
|
2033
|
+
def self.hcv
|
|
2034
|
+
"http://hcv.lanl.gov/components/sequence/HCV/asearch/query_one.comp?se_id=$id"
|
|
2035
|
+
end
|
|
2036
|
+
|
|
2037
|
+
def self.hdbas
|
|
2038
|
+
"http://jbirc.jbic.or.jp/h-dbas/locusOverview.do?db=all&hix=$id"
|
|
2039
|
+
end
|
|
2040
|
+
|
|
2041
|
+
def self.hdbase
|
|
2042
|
+
"http://hdbase.org/cgi-bin/jdrf_gene.cgi?ll_id=$id"
|
|
2043
|
+
end
|
|
2044
|
+
|
|
2045
|
+
def self.hdr
|
|
2046
|
+
"http://research.nhgri.nih.gov/homeodomain/?mode=view&view=proteins&id=$id"
|
|
2047
|
+
end
|
|
2048
|
+
|
|
2049
|
+
def self.hedgehog
|
|
2050
|
+
"http://hedgehog.sfsu.edu/genes/$id.html"
|
|
2051
|
+
end
|
|
2052
|
+
|
|
2053
|
+
def self.hegdb
|
|
2054
|
+
"http://genomes.urv.cat/HEG-DB/buscador/mostrar_statical.php?name=$id&aa=true&codon=true&rscu=true"
|
|
2055
|
+
end
|
|
2056
|
+
|
|
2057
|
+
def self.hembase
|
|
2058
|
+
"http://fmp-8.cit.nih.gov/hembase/detail.php?chrb=$id"
|
|
2059
|
+
end
|
|
2060
|
+
|
|
2061
|
+
def self.hgnc
|
|
2062
|
+
"http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id"
|
|
2063
|
+
end
|
|
2064
|
+
|
|
2065
|
+
def self.hgpd
|
|
2066
|
+
"http://riodb.ibase.aist.go.jp/hgpd/cgi-bin/pg_locus_list.cgi?txt_srch_cdna_name=$id"
|
|
2067
|
+
end
|
|
2068
|
+
|
|
2069
|
+
def self.hgsdd
|
|
2070
|
+
"http://projects.tcag.ca/cgi-bin/seg_dup/dupbrowse/human_b35/?name=$id"
|
|
2071
|
+
end
|
|
2072
|
+
|
|
2073
|
+
def self.hgvbase
|
|
2074
|
+
"http://www.hgvbaseg2p.org/study/$id"
|
|
2075
|
+
end
|
|
2076
|
+
|
|
2077
|
+
def self.hits
|
|
2078
|
+
"http://hits.isb-sib.ch/cgi-bin/view_mot_entry?name=$id"
|
|
2079
|
+
end
|
|
2080
|
+
|
|
2081
|
+
def self.hmp
|
|
2082
|
+
"http://www.hmpdacc-resources.org/cgi-bin/hmp_catalog/main.cgi?section=HmpSummary&page=displayHmpProject&hmp_id=$id"
|
|
2083
|
+
end
|
|
2084
|
+
|
|
2085
|
+
def self.hmpd
|
|
2086
|
+
"http://bioinfo.nist.gov/hmpd/servlet/Search3?vswiss_id=$id"
|
|
2087
|
+
end
|
|
2088
|
+
|
|
2089
|
+
def self.hoinvgen
|
|
2090
|
+
"http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=Hoinvprot&ident=1989108068"
|
|
2091
|
+
end
|
|
2092
|
+
|
|
2093
|
+
def self.homd
|
|
2094
|
+
"http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic"
|
|
2095
|
+
end
|
|
2096
|
+
|
|
2097
|
+
def self.homeodomain_resource
|
|
2098
|
+
"http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$id"
|
|
2099
|
+
end
|
|
2100
|
+
|
|
2101
|
+
def self.homstrad
|
|
2102
|
+
"http://tardis.nibio.go.jp/cgi-bin/homstrad/getdata.cgi?id=$id"
|
|
2103
|
+
end
|
|
2104
|
+
|
|
2105
|
+
def self.hoppsigen
|
|
2106
|
+
"http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=Hoppsigen&ident=1989108068"
|
|
2107
|
+
end
|
|
2108
|
+
|
|
2109
|
+
def self.horde
|
|
2110
|
+
"http://genome.weizmann.ac.il/cgi-bin/horde/showGene.pl?symbol=$id"
|
|
2111
|
+
end
|
|
2112
|
+
|
|
2113
|
+
def self.hotsprint
|
|
2114
|
+
"http://prism.ccbb.ku.edu.tr/hotsprint/result.php?queryId=$id"
|
|
2115
|
+
end
|
|
2116
|
+
|
|
2117
|
+
def self.howdy
|
|
2118
|
+
"http://howdy.jst.go.jp/HOWDYCL/HOWDY.pl?Cls=GenBank&Key=UKEY&Val=$id"
|
|
2119
|
+
end
|
|
2120
|
+
|
|
2121
|
+
def self.hpmr
|
|
2122
|
+
"http://www.receptome.org/HPMR/Families/Frameset_family.asp?FamId=$id"
|
|
2123
|
+
end
|
|
2124
|
+
|
|
2125
|
+
def self.htpselex
|
|
2126
|
+
"http://www.isrec.isb-sib.ch/cgi-bin/htpselex/doc.cgi?id=$id"
|
|
2127
|
+
end
|
|
2128
|
+
|
|
2129
|
+
def self.humancyc_compounds
|
|
2130
|
+
"http://biocyc.org/[?species]/NEW-IMAGE?type=COMPOUND&object=$id"
|
|
2131
|
+
end
|
|
2132
|
+
|
|
2133
|
+
def self.humancyc_genes
|
|
2134
|
+
"http://biocyc.org/[?species]/search-query?type=GENE&gname=$id"
|
|
2135
|
+
end
|
|
2136
|
+
|
|
2137
|
+
def self.humancyc_pathways
|
|
2138
|
+
"http://biocyc.org/[?species]/NEW-IMAGE?type=PATHWAY&object=$id"
|
|
2139
|
+
end
|
|
2140
|
+
|
|
2141
|
+
def self.humancyc_reactions
|
|
2142
|
+
"http://biocyc.org/[?species]/new-image?type=REACTION&object=$id"
|
|
2143
|
+
end
|
|
2144
|
+
|
|
2145
|
+
def self.hupi
|
|
2146
|
+
"http://hupi.ircm.qc.ca/hupi/gene/$id"
|
|
2147
|
+
end
|
|
2148
|
+
|
|
2149
|
+
def self.icbs
|
|
2150
|
+
"http://contact14.ics.uci.edu/htmlfiles/$id.mmol.html"
|
|
2151
|
+
end
|
|
2152
|
+
|
|
2153
|
+
def self.icds
|
|
2154
|
+
"http://www-bio3d-igbmc.u-strasbg.fr/ICDS/cgi-bin/gscope_html_server.tcsh?ICDS&PagesWeb&GvioManu&UnICDS&$id"
|
|
2155
|
+
end
|
|
2156
|
+
|
|
2157
|
+
def self.idbd
|
|
2158
|
+
"http://biomarker.korea.ac.kr/disease/disease_view_en.jsp?group=1&id=$id"
|
|
2159
|
+
end
|
|
2160
|
+
|
|
2161
|
+
def self.iev
|
|
2162
|
+
"http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$id"
|
|
2163
|
+
end
|
|
2164
|
+
|
|
2165
|
+
def self.igtcd
|
|
2166
|
+
"http://www.genetrap.org/cgi-bin/annotation.py?gene_key=$id"
|
|
2167
|
+
end
|
|
2168
|
+
|
|
2169
|
+
def self.ihop
|
|
2170
|
+
"http://www.ihop-net.org/UniPub/iHOP/gs/$id.html"
|
|
2171
|
+
end
|
|
2172
|
+
|
|
2173
|
+
def self.il2rgbase
|
|
2174
|
+
"http://research.nhgri.nih.gov/apps/scid/scid_reference.html#$id"
|
|
2175
|
+
end
|
|
2176
|
+
|
|
2177
|
+
def self.imgt_3dstructuredb
|
|
2178
|
+
"http://imgt.cines.fr/3Dstructure-DB/cgi/details.cgi?pdbcode=$id"
|
|
2179
|
+
end
|
|
2180
|
+
|
|
2181
|
+
def self.imgt_primerdb
|
|
2182
|
+
"http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$id&origin=view&source=PrList"
|
|
2183
|
+
end
|
|
2184
|
+
|
|
2185
|
+
def self.imotdb
|
|
2186
|
+
"http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$id"
|
|
2187
|
+
end
|
|
2188
|
+
|
|
2189
|
+
def self.imr
|
|
2190
|
+
"http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$id"
|
|
2191
|
+
end
|
|
2192
|
+
|
|
2193
|
+
def self.innatedb
|
|
2194
|
+
"http://www.innatedb.ca/getGeneCard.do?id=$id"
|
|
2195
|
+
end
|
|
2196
|
+
|
|
2197
|
+
def self.insrd
|
|
2198
|
+
"http://anobase.vectorbase.org/ir/assay.php?id=$id"
|
|
2199
|
+
end
|
|
2200
|
+
|
|
2201
|
+
def self.integr8
|
|
2202
|
+
"http://www.ebi.ac.uk/integr8/OrganismSelection.do?action=makeCurrent&proteomeId=$id"
|
|
2203
|
+
end
|
|
2204
|
+
|
|
2205
|
+
def self.interactive_fly
|
|
2206
|
+
"http://www.sdbonline.org/fly/$id.htm"
|
|
2207
|
+
end
|
|
2208
|
+
|
|
2209
|
+
def self.interfil
|
|
2210
|
+
"http://www.interfil.org/details.php?id=$id"
|
|
2211
|
+
end
|
|
2212
|
+
|
|
2213
|
+
def self.interpare
|
|
2214
|
+
"http://interpare.kobic.re.kr/cgi-bin/search_interface_from_interpare_new.cgi?pdb=$id"
|
|
2215
|
+
end
|
|
2216
|
+
|
|
2217
|
+
def self.ipath
|
|
2218
|
+
"http://escience.invitrogen.com/ipath/iPath.jsp?cn=unknown&mapid=$id"
|
|
2219
|
+
end
|
|
2220
|
+
|
|
2221
|
+
def self.ipdestdab
|
|
2222
|
+
"http://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?$id"
|
|
2223
|
+
end
|
|
2224
|
+
|
|
2225
|
+
def self.ipdmhc
|
|
2226
|
+
"http://www.ebi.ac.uk/cgi-bin/ipd/mhc/get_allele.cgi?$id"
|
|
2227
|
+
end
|
|
2228
|
+
|
|
2229
|
+
def self.ipfam
|
|
2230
|
+
"http://pfam.sanger.ac.uk/[family/clan]?acc=$id"
|
|
2231
|
+
end
|
|
2232
|
+
|
|
2233
|
+
def self.ipfam_proteome
|
|
2234
|
+
"http://pfam.sanger.ac.uk/proteome?taxId=$id"
|
|
2235
|
+
end
|
|
2236
|
+
|
|
2237
|
+
def self.iproclass
|
|
2238
|
+
"http://pir.georgetown.edu/cgi-bin/ipcEntry?id=$id"
|
|
2239
|
+
end
|
|
2240
|
+
|
|
2241
|
+
def self.iresite
|
|
2242
|
+
"http://www.iresite.org/IRESite_web.php?page=view&entry_id=$id"
|
|
2243
|
+
end
|
|
2244
|
+
|
|
2245
|
+
def self.islander
|
|
2246
|
+
"http://kementari.bioinformatics.vt.edu/cgi-bin/island.cgi?island=$id"
|
|
2247
|
+
end
|
|
2248
|
+
|
|
2249
|
+
def self.its2
|
|
2250
|
+
"http://its2.bioapps.biozentrum.uni-wuerzburg.de/cgi-bin/its2.pl?Taxon_id=$id&method=All"
|
|
2251
|
+
end
|
|
2252
|
+
|
|
2253
|
+
def self.ivdb
|
|
2254
|
+
"http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$id"
|
|
2255
|
+
end
|
|
2256
|
+
|
|
2257
|
+
def self.jail
|
|
2258
|
+
"http://bioinf-apache.charite.de/jail/index.php?site=show_interfaces&pdb_id=$id"
|
|
2259
|
+
end
|
|
2260
|
+
|
|
2261
|
+
def self.jcvi_genprop
|
|
2262
|
+
"http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenomePropDefinition.cgi?prop_acc=$id"
|
|
2263
|
+
end
|
|
2264
|
+
|
|
2265
|
+
def self.kdbi
|
|
2266
|
+
"http://bidd.nus.edu.sg/group/KDBI/Detail-new.asp?ID=$id"
|
|
2267
|
+
end
|
|
2268
|
+
|
|
2269
|
+
def self.kdd
|
|
2270
|
+
"http://golgi.ana.ed.ac.uk/$id.html"
|
|
2271
|
+
end
|
|
2272
|
+
|
|
2273
|
+
def self.kegg_brite
|
|
2274
|
+
"http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$id"
|
|
2275
|
+
end
|
|
2276
|
+
|
|
2277
|
+
def self.kegg_disease
|
|
2278
|
+
"http://www.genome.jp/dbget-bin/www_bget?ds:$id"
|
|
2279
|
+
end
|
|
2280
|
+
|
|
2281
|
+
def self.kineticdb
|
|
2282
|
+
"http://kineticdb.protres.ru/db/ind.pl?ind=$id"
|
|
2283
|
+
end
|
|
2284
|
+
|
|
2285
|
+
def self.klotho
|
|
2286
|
+
"http://www.biocheminfo.org/klotho/html/$id.html"
|
|
2287
|
+
end
|
|
2288
|
+
|
|
2289
|
+
def self.l1base
|
|
2290
|
+
"http://line1.bioapps.biozentrum.uni-wuerzburg.de/details.php?DBN=[?family_name]&UID=$id"
|
|
2291
|
+
end
|
|
2292
|
+
|
|
2293
|
+
def self.leproma
|
|
2294
|
+
"http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id&submit=Search"
|
|
2295
|
+
end
|
|
2296
|
+
|
|
2297
|
+
def self.ligasite
|
|
2298
|
+
"http://www.bigre.ulb.ac.be/Users/benoit/LigASite/index.php?apo=$id"
|
|
2299
|
+
end
|
|
2300
|
+
|
|
2301
|
+
def self.lncrna
|
|
2302
|
+
"http://lncrnadb.com/Detail.aspx?TKeyID=$id"
|
|
2303
|
+
end
|
|
2304
|
+
|
|
2305
|
+
def self.locate
|
|
2306
|
+
"http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=$id"
|
|
2307
|
+
end
|
|
2308
|
+
|
|
2309
|
+
def self.loqate
|
|
2310
|
+
"http://www.weizmann.ac.il/molgen/loqate/gene/view/$id"
|
|
2311
|
+
end
|
|
2312
|
+
|
|
2313
|
+
def self.lpfc
|
|
2314
|
+
"http://helix-web.stanford.edu/cgi-bin/textsearch.cgi?key=$id"
|
|
2315
|
+
end
|
|
2316
|
+
|
|
2317
|
+
def self.lsmd
|
|
2318
|
+
"http://research.nhgri.nih.gov/lowe/db_retrieval.cgi?site_name=lowe&exon_intron_num=$id"
|
|
2319
|
+
end
|
|
2320
|
+
|
|
2321
|
+
def self.magest
|
|
2322
|
+
"http://magest.hgc.jp/db/show_contig_by_entry_id/$id"
|
|
2323
|
+
end
|
|
2324
|
+
|
|
2325
|
+
def self.malaria
|
|
2326
|
+
"http://sites.huji.ac.il/malaria/maps/$id.html"
|
|
2327
|
+
end
|
|
2328
|
+
|
|
2329
|
+
def self.malisam
|
|
2330
|
+
"http://prodata.swmed.edu/malisam/[$id1][$id2]/[$id1][$id2].html"
|
|
2331
|
+
end
|
|
2332
|
+
|
|
2333
|
+
def self.mampol
|
|
2334
|
+
"http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$id"
|
|
2335
|
+
end
|
|
2336
|
+
|
|
2337
|
+
def self.mapviewer
|
|
2338
|
+
"http://www.ncbi.nlm.nih.gov/projects/mapview/map_search.cgi?taxid=$id"
|
|
2339
|
+
end
|
|
2340
|
+
|
|
2341
|
+
def self.mdpd
|
|
2342
|
+
"http://datam.i2r.a-star.edu.sg/mdpd/detail.php?symbol=$id"
|
|
2343
|
+
end
|
|
2344
|
+
|
|
2345
|
+
def self.megamotifbase
|
|
2346
|
+
"http://caps.ncbs.res.in/cgi-bin/mini/databases/MegaMotifbase/megamotif1.cgi?code=$id&opt=h"
|
|
2347
|
+
end
|
|
2348
|
+
|
|
2349
|
+
def self.mepd
|
|
2350
|
+
"http://ani.embl.de:8080/mepd/MdbShowClone01?cloneID=$id"
|
|
2351
|
+
end
|
|
2352
|
+
|
|
2353
|
+
def self.merna
|
|
2354
|
+
"http://merna.lbl.gov/search.php?type=simple&metal_ion=$id"
|
|
2355
|
+
end
|
|
2356
|
+
|
|
2357
|
+
def self.metacyc
|
|
2358
|
+
"http://biocyc.org/META/NEW-IMAGE?type=ENZYME&object=$id"
|
|
2359
|
+
end
|
|
2360
|
+
|
|
2361
|
+
def self.metagrowth
|
|
2362
|
+
"http://igs-server.cnrs-mrs.fr/axenic-cgi/www_get_evdb?evdb+$id"
|
|
2363
|
+
end
|
|
2364
|
+
|
|
2365
|
+
def self.metatiger
|
|
2366
|
+
"http://www.bioinformatics.leeds.ac.uk/metatiger/cgi_bin/pathway.cgi?organism=[$id1]&network=[$id2]"
|
|
2367
|
+
end
|
|
2368
|
+
|
|
2369
|
+
def self.methycancer_cancer
|
|
2370
|
+
"http://methycancer.psych.ac.cn/cancerDetail.do?cancerid=$id"
|
|
2371
|
+
end
|
|
2372
|
+
|
|
2373
|
+
def self.methycancer_clone
|
|
2374
|
+
"http://methycancer.psych.ac.cn/cloneDetail.do?clonename=$id"
|
|
2375
|
+
end
|
|
2376
|
+
|
|
2377
|
+
def self.methycancer_gene
|
|
2378
|
+
"http://methycancer.psych.ac.cn/geneDetail.do?geneid=$id"
|
|
2379
|
+
end
|
|
2380
|
+
|
|
2381
|
+
def self.methycancer_methylation
|
|
2382
|
+
"http://methycancer.psych.ac.cn/methylationDetail.do?id=$id"
|
|
2383
|
+
end
|
|
2384
|
+
|
|
2385
|
+
def self.metnetdb
|
|
2386
|
+
"http://metnetonline.org/browse_pathway2.php?pthID=$id"
|
|
2387
|
+
end
|
|
2388
|
+
|
|
2389
|
+
def self.mfungd
|
|
2390
|
+
"http://mips.helmholtz-muenchen.de/genre/proj/mfungd/singleGeneReport.html?entry=$id"
|
|
2391
|
+
end
|
|
2392
|
+
|
|
2393
|
+
def self.mgc
|
|
2394
|
+
"http://mgc.nci.nih.gov/Tissues/LibInfo?LID=$id"
|
|
2395
|
+
end
|
|
2396
|
+
|
|
2397
|
+
def self.mgg
|
|
2398
|
+
"http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$id"
|
|
2399
|
+
end
|
|
2400
|
+
|
|
2401
|
+
def self.mhcbn
|
|
2402
|
+
"http://www.imtech.res.in/cgibin/mhcbn/display.pl?field=sno&value=$id"
|
|
2403
|
+
end
|
|
2404
|
+
|
|
2405
|
+
def self.micado
|
|
2406
|
+
"http://genome.jouy.inra.fr/cgi-bin/micado/access.cgi?accessnumber=$id"
|
|
2407
|
+
end
|
|
2408
|
+
|
|
2409
|
+
def self.microkit
|
|
2410
|
+
"http://microkit.biocuckoo.org/html/$id.html"
|
|
2411
|
+
end
|
|
2412
|
+
|
|
2413
|
+
def self.millipore_pathways
|
|
2414
|
+
"http://www.millipore.com/pathways/pathviewer.do?searchTerms=&diseaseAreaIds=&pathwayId=$id"
|
|
2415
|
+
end
|
|
2416
|
+
|
|
2417
|
+
def self.mimi
|
|
2418
|
+
"http://mimi.ncibi.org/MimiWeb/gene-details-page-front.jsp?geneid=$id"
|
|
2419
|
+
end
|
|
2420
|
+
|
|
2421
|
+
def self.mirnamap
|
|
2422
|
+
"http://mirnamap.mbc.nctu.edu.tw/php/mirna_entry.php?acc=$id"
|
|
2423
|
+
end
|
|
2424
|
+
|
|
2425
|
+
def self.mirortho
|
|
2426
|
+
"http://cegg.unige.ch/mirortho/entry_details/$id"
|
|
2427
|
+
end
|
|
2428
|
+
|
|
2429
|
+
def self.mist
|
|
2430
|
+
"http://genomics.ornl.gov/mist/view_organism.php?organism_id=$id"
|
|
2431
|
+
end
|
|
2432
|
+
|
|
2433
|
+
def self.mitodat
|
|
2434
|
+
"http://www-lecb.ncifcrf.gov/mitoDat/$id.html"
|
|
2435
|
+
end
|
|
2436
|
+
|
|
2437
|
+
def self.mitoproteome
|
|
2438
|
+
"http://www.mitoproteome.org/data/proteome/index.cgi?db=mito&pid=L$id"
|
|
2439
|
+
end
|
|
2440
|
+
|
|
2441
|
+
def self.mmcd
|
|
2442
|
+
"http://mmcd.nmrfam.wisc.edu/test/cqsearch.py?cqid=$id"
|
|
2443
|
+
end
|
|
2444
|
+
|
|
2445
|
+
def self.mmsinc
|
|
2446
|
+
"http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$id"
|
|
2447
|
+
end
|
|
2448
|
+
|
|
2449
|
+
def self.modomics
|
|
2450
|
+
"http://modomics.genesilico.pl/modification?modification_id=$id"
|
|
2451
|
+
end
|
|
2452
|
+
|
|
2453
|
+
def self.mokca
|
|
2454
|
+
"http://strubiol.icr.ac.uk/extra/mokca/mut_by_prot.php?protein_q=$id"
|
|
2455
|
+
end
|
|
2456
|
+
|
|
2457
|
+
def self.molmovdb
|
|
2458
|
+
"http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$id"
|
|
2459
|
+
end
|
|
2460
|
+
|
|
2461
|
+
def self.mosdb
|
|
2462
|
+
"http://mips.helmholtz-muenchen.de/plant/rice/reportsjsp/contigReport.jsp?contig_id=$id"
|
|
2463
|
+
end
|
|
2464
|
+
|
|
2465
|
+
def self.mousecyc
|
|
2466
|
+
"http://mousecyc.jax.org/MOUSE/NEW-IMAGE?type=NIL&object=$id"
|
|
2467
|
+
end
|
|
2468
|
+
|
|
2469
|
+
def self.mp
|
|
2470
|
+
"http://www.informatics.jax.org/searches/Phat.cgi?id=$id"
|
|
2471
|
+
end
|
|
2472
|
+
|
|
2473
|
+
def self.mpd
|
|
2474
|
+
"http://phenome.jax.org/db/q?rtn=markers/details&reqsym=$id"
|
|
2475
|
+
end
|
|
2476
|
+
|
|
2477
|
+
def self.mtbd
|
|
2478
|
+
"http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$id"
|
|
2479
|
+
end
|
|
2480
|
+
|
|
2481
|
+
def self.mtbreglist
|
|
2482
|
+
"http://pages.usherbrooke.ca/gaudreau/MtbRegList/www/genome_ir_manip.php?id=$id"
|
|
2483
|
+
end
|
|
2484
|
+
|
|
2485
|
+
def self.mulpssm
|
|
2486
|
+
"http://crick.mbu.iisc.ernet.in/mulpssm/cgi/disp_fam.cgi?dbase=[?pali/pfam]&name=$id"
|
|
2487
|
+
end
|
|
2488
|
+
|
|
2489
|
+
def self.mutdb
|
|
2490
|
+
"http://mutdb.org/cgi-bin/mutdb.pl?id=[?gene_symbol]&geneid=$id"
|
|
2491
|
+
end
|
|
2492
|
+
|
|
2493
|
+
def self.nascarrays
|
|
2494
|
+
"http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=$id"
|
|
2495
|
+
end
|
|
2496
|
+
|
|
2497
|
+
def self.natsdb
|
|
2498
|
+
"http://natsdb.cbi.pku.edu.cn/nats_list.php?sa_type=SA_20&represent=1&keyword_term=&species=[?species_name]&id=$id"
|
|
2499
|
+
end
|
|
2500
|
+
|
|
2501
|
+
def self.ncir
|
|
2502
|
+
"http://prion.bchs.uh.edu/bp_type/individual_record_page$id.html"
|
|
2503
|
+
end
|
|
2504
|
+
|
|
2505
|
+
def self.ncl_resource
|
|
2506
|
+
"http://www.ucl.ac.uk/ncl/$id.shtml"
|
|
2507
|
+
end
|
|
2508
|
+
|
|
2509
|
+
def self.ncrnas_database
|
|
2510
|
+
"http://ncrnadb.trna.ibch.poznan.pl/scripts/getdesc.cgi?id=$id"
|
|
2511
|
+
end
|
|
2512
|
+
|
|
2513
|
+
def self.ndb
|
|
2514
|
+
"http://ndbserver.rutgers.edu/atlas/nmr/structures/id/$id/$id.html"
|
|
2515
|
+
end
|
|
2516
|
+
|
|
2517
|
+
def self.neibank
|
|
2518
|
+
"http://neibank.nei.nih.gov/cgi-bin/showDataTable.cgi?lib=$id"
|
|
2519
|
+
end
|
|
2520
|
+
|
|
2521
|
+
def self.nembase
|
|
2522
|
+
"http://www.nematodes.org/nembase4/cluster.php?cluster=$id"
|
|
2523
|
+
end
|
|
2524
|
+
|
|
2525
|
+
def self.netbiochem
|
|
2526
|
+
"http://library.med.utah.edu/NetBiochem/$id.htm"
|
|
2527
|
+
end
|
|
2528
|
+
|
|
2529
|
+
def self.netpath
|
|
2530
|
+
"http://www.netpath.org/molecule?molecule_id=$id"
|
|
2531
|
+
end
|
|
2532
|
+
|
|
2533
|
+
def self.netpro
|
|
2534
|
+
"http://www.interactions.net.in/index_molreport.jsp?id=$id"
|
|
2535
|
+
end
|
|
2536
|
+
|
|
2537
|
+
def self.neumore
|
|
2538
|
+
"http://neumore.cis.usouthal.edu/ontologies/NeuMORE-v0.1.owl#$id"
|
|
2539
|
+
end
|
|
2540
|
+
|
|
2541
|
+
def self.nextbio
|
|
2542
|
+
"http://www.nextbio.com/b/search/ov/$id"
|
|
2543
|
+
end
|
|
2544
|
+
|
|
2545
|
+
def self.nif
|
|
2546
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2547
|
+
end
|
|
2548
|
+
|
|
2549
|
+
def self.nif_agency
|
|
2550
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2551
|
+
end
|
|
2552
|
+
|
|
2553
|
+
def self.nif_backend
|
|
2554
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2555
|
+
end
|
|
2556
|
+
|
|
2557
|
+
def self.nif_cell
|
|
2558
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2559
|
+
end
|
|
2560
|
+
|
|
2561
|
+
def self.nif_dysfunction
|
|
2562
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2563
|
+
end
|
|
2564
|
+
|
|
2565
|
+
def self.nif_grossanatomy
|
|
2566
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2567
|
+
end
|
|
2568
|
+
|
|
2569
|
+
def self.nif_investigation
|
|
2570
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2571
|
+
end
|
|
2572
|
+
|
|
2573
|
+
def self.nif_molecule
|
|
2574
|
+
"http://www.neurolex.org/wiki/Category:$id"
|
|
2575
|
+
end
|
|
2576
|
+
|
|
2577
|
+
def self.nmpdr
|
|
2578
|
+
"http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$id"
|
|
2579
|
+
end
|
|
2580
|
+
|
|
2581
|
+
def self.norine
|
|
2582
|
+
"http://bioinfo.lifl.fr/norine/result.jsp?ID=$id"
|
|
2583
|
+
end
|
|
2584
|
+
|
|
2585
|
+
def self.npd
|
|
2586
|
+
"http://npd.hgu.mrc.ac.uk/user/$id"
|
|
2587
|
+
end
|
|
2588
|
+
|
|
2589
|
+
def self.nprd
|
|
2590
|
+
"http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+1JCHQ1bgqkg+-lib+$id"
|
|
2591
|
+
end
|
|
2592
|
+
|
|
2593
|
+
def self.ntdb
|
|
2594
|
+
"http://ntdb.chem.cuhk.edu.hk/data/$id.htm"
|
|
2595
|
+
end
|
|
2596
|
+
|
|
2597
|
+
def self.nursa
|
|
2598
|
+
"http://www.nursa.org/molecule.cfm?molType=[?molecule_type]&molId=$id"
|
|
2599
|
+
end
|
|
2600
|
+
|
|
2601
|
+
def self.odb
|
|
2602
|
+
"http://www.genome.sk.ritsumei.ac.jp/odb/odb2.rb?org=[?species]&genome_id=[?genome_id]&genes=$id"
|
|
2603
|
+
end
|
|
2604
|
+
|
|
2605
|
+
def self.ogd
|
|
2606
|
+
"http://www.oomycete.org/ogd/sequence.html?sequence_id=$id"
|
|
2607
|
+
end
|
|
2608
|
+
|
|
2609
|
+
def self.ogre
|
|
2610
|
+
"http://drake.mcmaster.ca/cgi-bin/ogre/featurelist.pl?genome=$id"
|
|
2611
|
+
end
|
|
2612
|
+
|
|
2613
|
+
def self.okcam
|
|
2614
|
+
"http://okcam.cbi.pku.edu.cn/entry-info.php?id=$id"
|
|
2615
|
+
end
|
|
2616
|
+
|
|
2617
|
+
def self.oma
|
|
2618
|
+
"http://www.omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id"
|
|
2619
|
+
end
|
|
2620
|
+
|
|
2621
|
+
def self.operondb
|
|
2622
|
+
"http://operondb.cbcb.umd.edu/cgi-bin/operondb/pairs.cgi?taxon_id=$id"
|
|
2623
|
+
end
|
|
2624
|
+
|
|
2625
|
+
def self.ordb
|
|
2626
|
+
"http://senselab.med.yale.edu/ordb/eavdata.asp?o=$id"
|
|
2627
|
+
end
|
|
2628
|
+
|
|
2629
|
+
def self.oreganno
|
|
2630
|
+
"http://www.oreganno.org/oregano/recordview.action?recid=$id"
|
|
2631
|
+
end
|
|
2632
|
+
|
|
2633
|
+
def self.orenza
|
|
2634
|
+
"http://www.orenza.u-psud.fr/query_by_ec.php?EC_number=EC%20$id"
|
|
2635
|
+
end
|
|
2636
|
+
|
|
2637
|
+
def self.orfdb
|
|
2638
|
+
"http://orf.invitrogen.com/cgi-bin/ORFCard?&ORF=$id&set=UltimateORFs&hboxPath=keyword"
|
|
2639
|
+
end
|
|
2640
|
+
|
|
2641
|
+
def self.organelle_db
|
|
2642
|
+
"http://organelledb.lsi.umich.edu/gene.php?id=$id"
|
|
2643
|
+
end
|
|
2644
|
+
|
|
2645
|
+
def self.orthomcl
|
|
2646
|
+
"http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi?rm=sequenceList&groupac=$id"
|
|
2647
|
+
end
|
|
2648
|
+
|
|
2649
|
+
def self.oryzabase_mutant
|
|
2650
|
+
"http://www.shigen.nig.ac.jp/rice/oryzabase/genes/symbolDetailAction.do?mutantGeneId=$id"
|
|
2651
|
+
end
|
|
2652
|
+
|
|
2653
|
+
def self.oryzabase_strain
|
|
2654
|
+
"http://www.shigen.nig.ac.jp/rice/oryzabase/nbrpStrains/nigDetailAction.do?nigStrainId=$id"
|
|
2655
|
+
end
|
|
2656
|
+
|
|
2657
|
+
def self.otl
|
|
2658
|
+
"http://urgi.versailles.inra.fr/OryzaTagLine/cgi-bin/general_mutant.pl?line=$id"
|
|
2659
|
+
end
|
|
2660
|
+
|
|
2661
|
+
def self.p3db
|
|
2662
|
+
"http://digbio.missouri.edu/p3db/data/protein.php?id=$id"
|
|
2663
|
+
end
|
|
2664
|
+
|
|
2665
|
+
def self.pairsdb
|
|
2666
|
+
"http://pairsdb.csc.fi/?query=seqinfo&accnum=$id"
|
|
2667
|
+
end
|
|
2668
|
+
|
|
2669
|
+
def self.pali
|
|
2670
|
+
"http://pauling.mbu.iisc.ernet.in/~pali/cgi/members.cgi?famno=$id"
|
|
2671
|
+
end
|
|
2672
|
+
|
|
2673
|
+
def self.pandit
|
|
2674
|
+
"http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$id"
|
|
2675
|
+
end
|
|
2676
|
+
|
|
2677
|
+
def self.panther_gene
|
|
2678
|
+
"http://www.pantherdb.org/genes/gene.do?acc=$id"
|
|
2679
|
+
end
|
|
2680
|
+
|
|
2681
|
+
def self.panther_ontology
|
|
2682
|
+
"http://www.pantherdb.org/panther/category.do?categoryAcc=$id"
|
|
2683
|
+
end
|
|
2684
|
+
|
|
2685
|
+
def self.partigenedb
|
|
2686
|
+
"http://www.compsysbio.org/partigene/cluster.php?cluster=$id"
|
|
2687
|
+
end
|
|
2688
|
+
|
|
2689
|
+
def self.pass2
|
|
2690
|
+
"http://caps.ncbs.res.in/cgi-bin/mini/databases/campass/pass/pass.cgi?code=$id"
|
|
2691
|
+
end
|
|
2692
|
+
|
|
2693
|
+
def self.pathfinder
|
|
2694
|
+
"http://www.sigmaaldrich.com/life-science/your-favorite-gene-search/pathway-overviews/$id.html"
|
|
2695
|
+
end
|
|
2696
|
+
|
|
2697
|
+
def self.pathguide
|
|
2698
|
+
"http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$id"
|
|
2699
|
+
end
|
|
2700
|
+
|
|
2701
|
+
def self.pathoplant
|
|
2702
|
+
"http://www.pathoplant.de/detail.php?accNo=$id"
|
|
2703
|
+
end
|
|
2704
|
+
|
|
2705
|
+
def self.pathwayontology
|
|
2706
|
+
"http://rgd.mcw.edu/tools/ontology/ont_annot.cgi?term_key=$id&ontology=go"
|
|
2707
|
+
end
|
|
2708
|
+
|
|
2709
|
+
def self.patric
|
|
2710
|
+
"http://patricbrc.vbi.vt.edu/portal/portal/patric/Taxon?cType=taxon&cId=$id"
|
|
2711
|
+
end
|
|
2712
|
+
|
|
2713
|
+
def self.pdb_tm
|
|
2714
|
+
"http://pdbtm.enzim.hu/?m=show_entry&id=$id"
|
|
2715
|
+
end
|
|
2716
|
+
|
|
2717
|
+
def self.pdba
|
|
2718
|
+
"http://www.rcsb.org/pdb/explore/explore.do?structureId=$id"
|
|
2719
|
+
end
|
|
2720
|
+
|
|
2721
|
+
def self.pdtd
|
|
2722
|
+
"http://www.dddc.ac.cn/pdtd/detail.php?pdbId=$id"
|
|
2723
|
+
end
|
|
2724
|
+
|
|
2725
|
+
def self.pedant
|
|
2726
|
+
"http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=$id"
|
|
2727
|
+
end
|
|
2728
|
+
|
|
2729
|
+
def self.pede
|
|
2730
|
+
"http://pede.dna.affrc.go.jp/seq_search/assembly_info.php?release=$id&name=$id"
|
|
2731
|
+
end
|
|
2732
|
+
|
|
2733
|
+
def self.pepbank
|
|
2734
|
+
"http://pepbank.mgh.harvard.edu/interactions/details/$id"
|
|
2735
|
+
end
|
|
2736
|
+
|
|
2737
|
+
def self.pepr
|
|
2738
|
+
"http://pepr.cnmcresearch.org/browse.do?action=list_[?exp/?prj_exp]&[?exp/?project]Id=$id"
|
|
2739
|
+
end
|
|
2740
|
+
|
|
2741
|
+
def self.pgdb
|
|
2742
|
+
"http://www.urogene.org/pgdb/gene/$id.html"
|
|
2743
|
+
end
|
|
2744
|
+
|
|
2745
|
+
def self.pharmgkb
|
|
2746
|
+
"http://www.pharmgkb.org/do/serve?objId=$id"
|
|
2747
|
+
end
|
|
2748
|
+
|
|
2749
|
+
def self.phci2dpage
|
|
2750
|
+
"http://www.gram.au.dk/cgi-bin/get-2d-entry/def?$id"
|
|
2751
|
+
end
|
|
2752
|
+
|
|
2753
|
+
def self.pibase
|
|
2754
|
+
"http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$id"
|
|
2755
|
+
end
|
|
2756
|
+
|
|
2757
|
+
def self.pig
|
|
2758
|
+
"http://molvis.vbi.vt.edu/pig/view/pig_protein_view.php?protein=$id"
|
|
2759
|
+
end
|
|
2760
|
+
|
|
2761
|
+
def self.piggis
|
|
2762
|
+
"http://pig.genomics.org.cn/transview.jsp?transcript=$id"
|
|
2763
|
+
end
|
|
2764
|
+
|
|
2765
|
+
def self.pigqtldb
|
|
2766
|
+
"http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$id"
|
|
2767
|
+
end
|
|
2768
|
+
|
|
2769
|
+
def self.pips
|
|
2770
|
+
"http://www.compbio.dundee.ac.uk/www-pips/Identifier.jsp?ID=$id&Interactions=Prot&LR=1.0&modules=on"
|
|
2771
|
+
end
|
|
2772
|
+
|
|
2773
|
+
def self.pisite
|
|
2774
|
+
"http://pisite.hgc.jp/cgi-bin/view.cgi?pdbid=$id&chain=[?chain]"
|
|
2775
|
+
end
|
|
2776
|
+
|
|
2777
|
+
def self.plantcyc
|
|
2778
|
+
"http://pmn.plantcyc.org/PLANT/NEW-IMAGE?type=GENE&object=$id"
|
|
2779
|
+
end
|
|
2780
|
+
|
|
2781
|
+
def self.plantsp_plantst
|
|
2782
|
+
"http://plantst.genomics.purdue.edu/cgi-bin/detail.cgi?db=plants[?t/?p]&id=$id"
|
|
2783
|
+
end
|
|
2784
|
+
|
|
2785
|
+
def self.planttfdb
|
|
2786
|
+
"http://planttfdb.cbi.pku.edu.cn/tf.php?sp=[?species_name]&did=$id"
|
|
2787
|
+
end
|
|
2788
|
+
|
|
2789
|
+
def self.planttribes
|
|
2790
|
+
"http://fgp.huck.psu.edu/tribedb/gene.pl?action=view_gene&gene_id=$id"
|
|
2791
|
+
end
|
|
2792
|
+
|
|
2793
|
+
def self.plasmid
|
|
2794
|
+
"http://plasmid.med.harvard.edu/PLASMID/GetCollection.do?collectionName=$id"
|
|
2795
|
+
end
|
|
2796
|
+
|
|
2797
|
+
def self.plpmdb
|
|
2798
|
+
"http://www.studiofmp.com/plpmdb/mutant.asp?Id=$id"
|
|
2799
|
+
end
|
|
2800
|
+
|
|
2801
|
+
def self.plprot
|
|
2802
|
+
"http://www.plprot.ethz.ch/index.php?page=ProteinDetails&plp_id=$id&organism=[?species_name]"
|
|
2803
|
+
end
|
|
2804
|
+
|
|
2805
|
+
def self.pmd
|
|
2806
|
+
"http://spock.genes.nig.ac.jp/~pmd/cgi-bin/PMD/PMDentry.pl.cgi?$id"
|
|
2807
|
+
end
|
|
2808
|
+
|
|
2809
|
+
def self.pod
|
|
2810
|
+
"http://podb.nibb.ac.jp/Organellome/bin/browseImage.php?ID=Image-toshi_biochem.tohoku.ac.jp-$id"
|
|
2811
|
+
end
|
|
2812
|
+
|
|
2813
|
+
def self.pogs_plantrbp
|
|
2814
|
+
"http://plantrbp.uoregon.edu/pogView.php?id=$id"
|
|
2815
|
+
end
|
|
2816
|
+
|
|
2817
|
+
def self.polya_db
|
|
2818
|
+
"http://polya.umdnj.edu/polya_db2/gene.php?llid=$id"
|
|
2819
|
+
end
|
|
2820
|
+
|
|
2821
|
+
def self.polydoms
|
|
2822
|
+
"http://polydoms.cchmc.org/polydoms/GD?DISP_OPTION=[?NonSynonymous/Synonymous]&field1=$id"
|
|
2823
|
+
end
|
|
2824
|
+
|
|
2825
|
+
def self.polymorphix
|
|
2826
|
+
"http://pbil.univ-lyon1.fr/cgi-bin/acnuc-dispfam?query=$id&db=Polymorphix"
|
|
2827
|
+
end
|
|
2828
|
+
|
|
2829
|
+
def self.poxvirus_gene
|
|
2830
|
+
"http://www.poxvirus.org/gene_detail.asp?gene_id=$id"
|
|
2831
|
+
end
|
|
2832
|
+
|
|
2833
|
+
def self.poxvirus_genome
|
|
2834
|
+
"http://www.poxvirus.org/map.asp?genome_id=$id"
|
|
2835
|
+
end
|
|
2836
|
+
|
|
2837
|
+
def self.precise
|
|
2838
|
+
"http://precise.bu.edu/Output.aspx?UniqueID=$id"
|
|
2839
|
+
end
|
|
2840
|
+
|
|
2841
|
+
def self.premod
|
|
2842
|
+
"http://genomequebec.mcgill.ca/PReMod/show/module.do?method=showModule&moduleId=$id"
|
|
2843
|
+
end
|
|
2844
|
+
|
|
2845
|
+
def self.priam
|
|
2846
|
+
"http://prodomweb.univ-lyon1.fr/priam/cgi-bin/ReqPRIAM_png.pl?priam_release=OCT11&priam_ac=$id"
|
|
2847
|
+
end
|
|
2848
|
+
|
|
2849
|
+
def self.prime
|
|
2850
|
+
"http://prime.ontology.ims.u-tokyo.ac.jp:8081/php/DbDispProtein.php?proteinID=$id"
|
|
2851
|
+
end
|
|
2852
|
+
|
|
2853
|
+
def self.prints
|
|
2854
|
+
"http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/PRINTS/DoPRINTS.pl?cmd_a=Display&qua_a=/Full&fun_a=Code&qst_a=$id"
|
|
2855
|
+
end
|
|
2856
|
+
|
|
2857
|
+
def self.procognate
|
|
2858
|
+
"http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/procognate/PDBquery.pl?PDBcode=$id&Classification=[?CATH/?SCOP/?Pfam]"
|
|
2859
|
+
end
|
|
2860
|
+
|
|
2861
|
+
def self.prodoric_bindingsite
|
|
2862
|
+
"http://prodoric.tu-bs.de/site.php?site_acc=$id"
|
|
2863
|
+
end
|
|
2864
|
+
|
|
2865
|
+
def self.prodoric_expression
|
|
2866
|
+
"http://prodoric.tu-bs.de/profile.php?profile_acc=$id"
|
|
2867
|
+
end
|
|
2868
|
+
|
|
2869
|
+
def self.prodoric_gene
|
|
2870
|
+
"http://prodoric.tu-bs.de/gene.php?gene_acc=$id"
|
|
2871
|
+
end
|
|
2872
|
+
|
|
2873
|
+
def self.prodoric_protein
|
|
2874
|
+
"http://prodoric.tu-bs.de/protein.php?protein_acc=$id"
|
|
2875
|
+
end
|
|
2876
|
+
|
|
2877
|
+
def self.promex
|
|
2878
|
+
"http://promex.pph.univie.ac.at/promex/?spec=$id"
|
|
2879
|
+
end
|
|
2880
|
+
|
|
2881
|
+
def self.promise
|
|
2882
|
+
"http://metallo.scripps.edu/PROMISE/$id.html"
|
|
2883
|
+
end
|
|
2884
|
+
|
|
2885
|
+
def self.pronit
|
|
2886
|
+
"http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/pronit/new/bind_entry.pl?ENTRY=$id"
|
|
2887
|
+
end
|
|
2888
|
+
|
|
2889
|
+
def self.prorule
|
|
2890
|
+
"http://www.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=$id"
|
|
2891
|
+
end
|
|
2892
|
+
|
|
2893
|
+
def self.protcom
|
|
2894
|
+
"http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$id"
|
|
2895
|
+
end
|
|
2896
|
+
|
|
2897
|
+
def self.protherm
|
|
2898
|
+
"http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/protherm/pp_entry.pl?ENTRY=$id"
|
|
2899
|
+
end
|
|
2900
|
+
|
|
2901
|
+
def self.psd
|
|
2902
|
+
"http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/get-sno-sequence-and-allignments?id=$id"
|
|
2903
|
+
end
|
|
2904
|
+
|
|
2905
|
+
def self.pseudobase
|
|
2906
|
+
"http://www.ekevanbatenburg.nl/PKBASE/$id.HTML"
|
|
2907
|
+
end
|
|
2908
|
+
|
|
2909
|
+
def self.pseudocap
|
|
2910
|
+
"http://www.pseudomonas.com/getAnnotation.do?locusID=$id"
|
|
2911
|
+
end
|
|
2912
|
+
|
|
2913
|
+
def self.pseudogene
|
|
2914
|
+
"http://tables.pseudogene.org/[?species_name]/$id"
|
|
2915
|
+
end
|
|
2916
|
+
|
|
2917
|
+
def self.pstiing
|
|
2918
|
+
"http://pstiing.licr.org/search/c_proteininfo.jsp?uniprot_id=$id"
|
|
2919
|
+
end
|
|
2920
|
+
|
|
2921
|
+
def self.ptmswitchboard
|
|
2922
|
+
"http://cagr.pcbi.upenn.edu/PTMswitchboard/jsp/detail.jsp?ID=$id"
|
|
2923
|
+
end
|
|
2924
|
+
|
|
2925
|
+
def self.pubmeth
|
|
2926
|
+
"http://matrix.ugent.be/temp/static/$id.html"
|
|
2927
|
+
end
|
|
2928
|
+
|
|
2929
|
+
def self.qppd
|
|
2930
|
+
"http://lpgws.nci.nih.gov/cgi-bin/PrimerViewer?acc=$id"
|
|
2931
|
+
end
|
|
2932
|
+
|
|
2933
|
+
def self.rad
|
|
2934
|
+
"http://rad.dna.affrc.go.jp/SY-1102-cgi-bin/rad/PCA/ctl_frame.cgi?clone=$id"
|
|
2935
|
+
end
|
|
2936
|
+
|
|
2937
|
+
def self.rapdb
|
|
2938
|
+
"http://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/build5?name=[$id"
|
|
2939
|
+
end
|
|
2940
|
+
|
|
2941
|
+
def self.rapid
|
|
2942
|
+
"http://rapid.rcai.riken.jp/RAPID/diseasePhenotype?pid_id=$id"
|
|
2943
|
+
end
|
|
2944
|
+
|
|
2945
|
+
def self.rarge
|
|
2946
|
+
"http://rarge.psc.riken.jp/dsmutant/detail.pl?keyword=$id"
|
|
2947
|
+
end
|
|
2948
|
+
|
|
2949
|
+
def self.ratmap
|
|
2950
|
+
"http://ratmap.org/Showgene.php?gene_stable_id=$id"
|
|
2951
|
+
end
|
|
2952
|
+
|
|
2953
|
+
def self.rcd
|
|
2954
|
+
"http://purl.bioontology.org/ontology/RCD/$id"
|
|
2955
|
+
end
|
|
2956
|
+
|
|
2957
|
+
def self.recode
|
|
2958
|
+
"http://recode.ucc.ie/recode/$id/"
|
|
2959
|
+
end
|
|
2960
|
+
|
|
2961
|
+
def self.redfly
|
|
2962
|
+
"http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$id"
|
|
2963
|
+
end
|
|
2964
|
+
|
|
2965
|
+
def self.redidb
|
|
2966
|
+
"http://biologia.unical.it/py_script/cgi-bin/retrieve.py?query=$id"
|
|
2967
|
+
end
|
|
2968
|
+
|
|
2969
|
+
def self.regtransbase
|
|
2970
|
+
"http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=geneinfo&seqfeature_id=$id"
|
|
2971
|
+
end
|
|
2972
|
+
|
|
2973
|
+
def self.regulondb
|
|
2974
|
+
"http://regulondb.ccg.unam.mx/GeneController?key_id_org=ECK12&gene_id=$id&type=jsp"
|
|
2975
|
+
end
|
|
2976
|
+
|
|
2977
|
+
def self.replicationdomain
|
|
2978
|
+
"http://www.replicationdomain.com/view-dataset.php?RecordID=$id"
|
|
2979
|
+
end
|
|
2980
|
+
|
|
2981
|
+
def self.repo
|
|
2982
|
+
"http://purl.bioontology.org/ontology/REPO.owl#$id"
|
|
2983
|
+
end
|
|
2984
|
+
|
|
2985
|
+
def self.reproduction2dpage
|
|
2986
|
+
"http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi?ac=$id"
|
|
2987
|
+
end
|
|
2988
|
+
|
|
2989
|
+
def self.rfam
|
|
2990
|
+
"http://rfam.sanger.ac.uk/family/$id"
|
|
2991
|
+
end
|
|
2992
|
+
|
|
2993
|
+
def self.rgd_gene
|
|
2994
|
+
"http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id"
|
|
2995
|
+
end
|
|
2996
|
+
|
|
2997
|
+
def self.rgd_qtl
|
|
2998
|
+
"http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=$id"
|
|
2999
|
+
end
|
|
3000
|
+
|
|
3001
|
+
def self.rgd_ref
|
|
3002
|
+
"http://rgd.mcw.edu/tools/references/references_view.cgi?id=$id"
|
|
3003
|
+
end
|
|
3004
|
+
|
|
3005
|
+
def self.rgd_strain
|
|
3006
|
+
"http://rgd.mcw.edu/tools/strains/strains_view.cgi?id=$id"
|
|
3007
|
+
end
|
|
3008
|
+
|
|
3009
|
+
def self.rh_mesh
|
|
3010
|
+
"http://bioonto.de/mesh.owl#$id"
|
|
3011
|
+
end
|
|
3012
|
+
|
|
3013
|
+
def self.rice_pipeline
|
|
3014
|
+
"http://cdna01.dna.affrc.go.jp/cDNA/report/$id.html"
|
|
3015
|
+
end
|
|
3016
|
+
|
|
3017
|
+
def self.ricecyc
|
|
3018
|
+
"http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$id"
|
|
3019
|
+
end
|
|
3020
|
+
|
|
3021
|
+
def self.rissc
|
|
3022
|
+
"http://egg.umh.es/rissc/fich.php?accession=$id"
|
|
3023
|
+
end
|
|
3024
|
+
|
|
3025
|
+
def self.rkd
|
|
3026
|
+
"http://phylomics.ucdavis.edu/kinase/tree.php?fam=$id"
|
|
3027
|
+
end
|
|
3028
|
+
|
|
3029
|
+
def self.rmd
|
|
3030
|
+
"http://ribosome.fandm.edu/node/$id"
|
|
3031
|
+
end
|
|
3032
|
+
|
|
3033
|
+
def self.rna_sstrand
|
|
3034
|
+
"http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$id"
|
|
3035
|
+
end
|
|
3036
|
+
|
|
3037
|
+
def self.rnajunction
|
|
3038
|
+
"http://rnajunction.abcc.ncifcrf.gov/JunctionPage.php?jid=$id"
|
|
3039
|
+
end
|
|
3040
|
+
|
|
3041
|
+
def self.rnao
|
|
3042
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3043
|
+
end
|
|
3044
|
+
|
|
3045
|
+
def self.rnrdb
|
|
3046
|
+
"http://rnrdb.molbio.su.se/proteins_for_organism.html?organism_nr=$id"
|
|
3047
|
+
end
|
|
3048
|
+
|
|
3049
|
+
def self.roleo
|
|
3050
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3051
|
+
end
|
|
3052
|
+
|
|
3053
|
+
def self.rospath_pc
|
|
3054
|
+
"http://rospath.ewha.ac.kr/complex/ProteinComplexDetailFrm.jsp?ENTITY_ID=$id"
|
|
3055
|
+
end
|
|
3056
|
+
|
|
3057
|
+
def self.rospath_protein
|
|
3058
|
+
"http://rospath.ewha.ac.kr/protein/ProteinDetailFrm.jsp?ENTITY_ID=$id"
|
|
3059
|
+
end
|
|
3060
|
+
|
|
3061
|
+
def self.rospath_signalling
|
|
3062
|
+
"http://rospath.ewha.ac.kr/signaling/SignalingDetailFrm.jsp?SIGNALING_ID=$id"
|
|
3063
|
+
end
|
|
3064
|
+
|
|
3065
|
+
def self.rospath_transition
|
|
3066
|
+
"http://rospath.ewha.ac.kr/interaction/ProteinTransitionDetailFrm.jsp?ENTITY_ID=$id"
|
|
3067
|
+
end
|
|
3068
|
+
|
|
3069
|
+
def self.rpg
|
|
3070
|
+
"http://ribosome.miyazaki-med.ac.jp/rpg.cgi?mode=gene&id=$id"
|
|
3071
|
+
end
|
|
3072
|
+
|
|
3073
|
+
def self.rs
|
|
3074
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3075
|
+
end
|
|
3076
|
+
|
|
3077
|
+
def self.rtcgd
|
|
3078
|
+
"http://rtcgd.abcc.ncifcrf.gov/cgi-bin/mm9/clone_finder.cgi?query=$id"
|
|
3079
|
+
end
|
|
3080
|
+
|
|
3081
|
+
def self.rtprimerdb
|
|
3082
|
+
"http://medgen.ugent.be/rtprimerdb/assay_report.php?assay_id=$id"
|
|
3083
|
+
end
|
|
3084
|
+
|
|
3085
|
+
def self.rvd
|
|
3086
|
+
"http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$id"
|
|
3087
|
+
end
|
|
3088
|
+
|
|
3089
|
+
def self.s_mart_db
|
|
3090
|
+
"http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$id"
|
|
3091
|
+
end
|
|
3092
|
+
|
|
3093
|
+
def self.salad
|
|
3094
|
+
"http://salad.dna.affrc.go.jp/CGViewer/en/v3.0/cgv_clust_view.jsp?pfamid=$id"
|
|
3095
|
+
end
|
|
3096
|
+
|
|
3097
|
+
def self.sbase
|
|
3098
|
+
"http://hydra.icgeb.trieste.it/sbase/sbase.php?sec=search&sub=group&group_id=$id"
|
|
3099
|
+
end
|
|
3100
|
+
|
|
3101
|
+
def self.scadb
|
|
3102
|
+
"http://ymbc.ym.edu.tw/cgi-bin/SCAdb_ensembl/aroundSTR.cgi?sca_type=SCA1&type=CAG&repeats_id=$id"
|
|
3103
|
+
end
|
|
3104
|
+
|
|
3105
|
+
def self.schistodb
|
|
3106
|
+
"http://schistocyc.schistodb.net/ptools/SM/NEW-IMAGE?type=GENE&object=$id"
|
|
3107
|
+
end
|
|
3108
|
+
|
|
3109
|
+
def self.scmd
|
|
3110
|
+
"http://yeast.gi.k.u-tokyo.ac.jp/datamine/ViewStats.do?orf=$id"
|
|
3111
|
+
end
|
|
3112
|
+
|
|
3113
|
+
def self.scpd
|
|
3114
|
+
"http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$id"
|
|
3115
|
+
end
|
|
3116
|
+
|
|
3117
|
+
def self.sdap
|
|
3118
|
+
"http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$id"
|
|
3119
|
+
end
|
|
3120
|
+
|
|
3121
|
+
def self.sdr
|
|
3122
|
+
"http://paradox.harvard.edu/sdr/families/$id/$id_main.html"
|
|
3123
|
+
end
|
|
3124
|
+
|
|
3125
|
+
def self.seedgenes
|
|
3126
|
+
"http://www.seedgenes.org/SeedGeneProfile?geneSymbol=$id"
|
|
3127
|
+
end
|
|
3128
|
+
|
|
3129
|
+
def self.selenodb
|
|
3130
|
+
"http://www.selenodb.org/cgi-perl/feature_report.pl?feature=$id_1.0"
|
|
3131
|
+
end
|
|
3132
|
+
|
|
3133
|
+
def self.sheepqtldb
|
|
3134
|
+
"http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$id"
|
|
3135
|
+
end
|
|
3136
|
+
|
|
3137
|
+
def self.shibase
|
|
3138
|
+
"http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$id"
|
|
3139
|
+
end
|
|
3140
|
+
|
|
3141
|
+
def self.shr
|
|
3142
|
+
"http://www.shojaee.com/shr/shr.owl#$id"
|
|
3143
|
+
end
|
|
3144
|
+
|
|
3145
|
+
def self.siege
|
|
3146
|
+
"http://pulm.bumc.bu.edu/cgi-bin/siegeDB/siege_html/compsearchgraph.cgi?$id"
|
|
3147
|
+
end
|
|
3148
|
+
|
|
3149
|
+
def self.siena2dpage
|
|
3150
|
+
"http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi?ac=$id"
|
|
3151
|
+
end
|
|
3152
|
+
|
|
3153
|
+
def self.silkdb
|
|
3154
|
+
"http://www.silkdb.org/cgi-bin/gbrowse/silkdb/?name=$id"
|
|
3155
|
+
end
|
|
3156
|
+
|
|
3157
|
+
def self.silva
|
|
3158
|
+
"http://www.arb-silva.de/browser/ssu/$id/embl/?tx_pmtree_pi1[pid]=$id"
|
|
3159
|
+
end
|
|
3160
|
+
|
|
3161
|
+
def self.sisyphus
|
|
3162
|
+
"http://sisyphus.mrc-cpe.cam.ac.uk/sisyphus/alignment.jsp?ac=$id"
|
|
3163
|
+
end
|
|
3164
|
+
|
|
3165
|
+
def self.smr
|
|
3166
|
+
"http://swissmodel.expasy.org/repository/?pid=$id&uid=&token=&zid=async"
|
|
3167
|
+
end
|
|
3168
|
+
|
|
3169
|
+
def self.snap
|
|
3170
|
+
"http://snap.humgen.au.dk/views/geneview.cgi?gene=$id"
|
|
3171
|
+
end
|
|
3172
|
+
|
|
3173
|
+
def self.snornalbmedb
|
|
3174
|
+
"http://www-snorna.biotoul.fr/plus.php?id=$id"
|
|
3175
|
+
end
|
|
3176
|
+
|
|
3177
|
+
def self.snp2nmd
|
|
3178
|
+
"http://variome.kobic.re.kr/SNP2NMD/snp2nmd.jsp?id=$id&rule=50"
|
|
3179
|
+
end
|
|
3180
|
+
|
|
3181
|
+
def self.snp500cancer
|
|
3182
|
+
"http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$id"
|
|
3183
|
+
end
|
|
3184
|
+
|
|
3185
|
+
def self.snpeffect
|
|
3186
|
+
"http://snpeffect.vib.be/snp_main.php?id=$id"
|
|
3187
|
+
end
|
|
3188
|
+
|
|
3189
|
+
def self.soy
|
|
3190
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3191
|
+
end
|
|
3192
|
+
|
|
3193
|
+
def self.spbase
|
|
3194
|
+
"http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$id"
|
|
3195
|
+
end
|
|
3196
|
+
|
|
3197
|
+
def self.spd
|
|
3198
|
+
"http://spd.cbi.pku.edu.cn/spd_pro.php?id=$id"
|
|
3199
|
+
end
|
|
3200
|
+
|
|
3201
|
+
def self.spdo
|
|
3202
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3203
|
+
end
|
|
3204
|
+
|
|
3205
|
+
def self.spliceinfo
|
|
3206
|
+
"http://spliceinfo.mbc.nctu.edu.tw/info_show.php?gs_id=$id"
|
|
3207
|
+
end
|
|
3208
|
+
|
|
3209
|
+
def self.splicenest
|
|
3210
|
+
"http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$id"
|
|
3211
|
+
end
|
|
3212
|
+
|
|
3213
|
+
def self.spodobase
|
|
3214
|
+
"http://bioweb.ensam.inra.fr/Spodopterav3/sequence?name=$id&class=Sequence"
|
|
3215
|
+
end
|
|
3216
|
+
|
|
3217
|
+
def self.spto
|
|
3218
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3219
|
+
end
|
|
3220
|
+
|
|
3221
|
+
def self.srd
|
|
3222
|
+
"http://rapeseed.plantsignal.cn/viewGene.do?id=$id"
|
|
3223
|
+
end
|
|
3224
|
+
|
|
3225
|
+
def self.srpdb
|
|
3226
|
+
"http://rnp.uthct.edu/rnp/SRPDB/rna/sequences/fasta/$id.fasta"
|
|
3227
|
+
end
|
|
3228
|
+
|
|
3229
|
+
def self.sstoss
|
|
3230
|
+
"http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$id"
|
|
3231
|
+
end
|
|
3232
|
+
|
|
3233
|
+
def self.straininfonet
|
|
3234
|
+
"http://www.straininfo.net/taxa/$id"
|
|
3235
|
+
end
|
|
3236
|
+
|
|
3237
|
+
def self.strepto_db
|
|
3238
|
+
"http://oger.tu-bs.de/websites/query_result.php?index=1&dbno=$id"
|
|
3239
|
+
end
|
|
3240
|
+
|
|
3241
|
+
def self.suba
|
|
3242
|
+
"http://suba.plantenergy.uwa.edu.au/flatfile.php?id=$id"
|
|
3243
|
+
end
|
|
3244
|
+
|
|
3245
|
+
def self.sulfolobus
|
|
3246
|
+
"http://www.sulfolobus.org/cbin/mutagen.pl?page=misc&gidinfo=$id"
|
|
3247
|
+
end
|
|
3248
|
+
|
|
3249
|
+
def self.superdrug
|
|
3250
|
+
"http://bioinf.charite.de/superdrug/fullinfo.php?cas=$id"
|
|
3251
|
+
end
|
|
3252
|
+
|
|
3253
|
+
def self.superhapten
|
|
3254
|
+
"http://bioinformatics.charite.de/superhapten/fullinfo_hapten_chime.php?id=$id"
|
|
3255
|
+
end
|
|
3256
|
+
|
|
3257
|
+
def self.supernatural
|
|
3258
|
+
"http://bioinformatics.charite.de/supernatural/marvin/fullinfo_roempp_marvin.php?cas=$id"
|
|
3259
|
+
end
|
|
3260
|
+
|
|
3261
|
+
def self.superscent
|
|
3262
|
+
"http://bioinformatics.charite.de/superscent/src/fullinfo.php?cas=$id"
|
|
3263
|
+
end
|
|
3264
|
+
|
|
3265
|
+
def self.supersite
|
|
3266
|
+
"http://bioinf-tomcat.charite.de/supersite/resultPDB.faces?pdbid=$id"
|
|
3267
|
+
end
|
|
3268
|
+
|
|
3269
|
+
def self.supertoxic
|
|
3270
|
+
"http://bioinformatics.charite.de/supertoxic/index.php?site=detail_view&ids=($id)"
|
|
3271
|
+
end
|
|
3272
|
+
|
|
3273
|
+
def self.supfam
|
|
3274
|
+
"http://pauling.mbu.iisc.ernet.in/supfam/cgi/display_pfam.cgi?name=$id"
|
|
3275
|
+
end
|
|
3276
|
+
|
|
3277
|
+
def self.swiss2dpage
|
|
3278
|
+
"http://ca.expasy.org/swiss-2dpage/ac=$id"
|
|
3279
|
+
end
|
|
3280
|
+
|
|
3281
|
+
def self.syfpeithi
|
|
3282
|
+
"http://www.ebi.ac.uk/cgi-bin/emblfetch?$id"
|
|
3283
|
+
end
|
|
3284
|
+
|
|
3285
|
+
def self.symptom
|
|
3286
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3287
|
+
end
|
|
3288
|
+
|
|
3289
|
+
def self.sysbodyfluid
|
|
3290
|
+
"http://www.biosino.org/bodyfluid/protein.jsp?proteinID=$id"
|
|
3291
|
+
end
|
|
3292
|
+
|
|
3293
|
+
def self.systers
|
|
3294
|
+
"http://systers.molgen.mpg.de/cgi-bin/nph-fetchcluster.pl?CLNR=$id"
|
|
3295
|
+
end
|
|
3296
|
+
|
|
3297
|
+
def self.systomonas_compound
|
|
3298
|
+
"http://www.systomonas.de/compound.php?cp_acc=$id"
|
|
3299
|
+
end
|
|
3300
|
+
|
|
3301
|
+
def self.systomonas_gene
|
|
3302
|
+
"http://www.systomonas.de/gene.php?ge_acc=$id"
|
|
3303
|
+
end
|
|
3304
|
+
|
|
3305
|
+
def self.systomonas_interaction
|
|
3306
|
+
"http://www.systomonas.de/interaction.php?ia_acc=$id"
|
|
3307
|
+
end
|
|
3308
|
+
|
|
3309
|
+
def self.systomonas_pathways
|
|
3310
|
+
"http://www.systomonas.de/pathway.php?pa_acc=$id"
|
|
3311
|
+
end
|
|
3312
|
+
|
|
3313
|
+
def self.systomonas_protein
|
|
3314
|
+
"http://www.systomonas.de/protein.php?pr_acc=$id"
|
|
3315
|
+
end
|
|
3316
|
+
|
|
3317
|
+
def self.t1dbase
|
|
3318
|
+
"http://t1dbase.org/page/Overview/display/gene_id/$id"
|
|
3319
|
+
end
|
|
3320
|
+
|
|
3321
|
+
def self.taed
|
|
3322
|
+
"http://www.sbc.su.se/~malin_a/TAEDcorr/$id.html"
|
|
3323
|
+
end
|
|
3324
|
+
|
|
3325
|
+
def self.tao
|
|
3326
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3327
|
+
end
|
|
3328
|
+
|
|
3329
|
+
def self.taxrank
|
|
3330
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3331
|
+
end
|
|
3332
|
+
|
|
3333
|
+
def self.tbdb
|
|
3334
|
+
"http://genome.tbdb.org/annotation/genome/tbdb/GeneDetails.html?sp=$id"
|
|
3335
|
+
end
|
|
3336
|
+
|
|
3337
|
+
def self.tbestdb
|
|
3338
|
+
"http://tbestdb.bcm.umontreal.ca/searches/contig.php?conDeID=$id"
|
|
3339
|
+
end
|
|
3340
|
+
|
|
3341
|
+
def self.tc7ap
|
|
3342
|
+
"http://www.chr7.org/cgi-bin/geneview?id=$id"
|
|
3343
|
+
end
|
|
3344
|
+
|
|
3345
|
+
def self.tccd
|
|
3346
|
+
"http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$id"
|
|
3347
|
+
end
|
|
3348
|
+
|
|
3349
|
+
def self.tcruzidb
|
|
3350
|
+
"http://tcruzidb.org/tcruzidb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=$id"
|
|
3351
|
+
end
|
|
3352
|
+
|
|
3353
|
+
def self.tecrdb
|
|
3354
|
+
"http://xpdb.nist.gov/enzyme_thermodynamics/enzyme_data1.pl?T1=$id"
|
|
3355
|
+
end
|
|
3356
|
+
|
|
3357
|
+
def self.tess
|
|
3358
|
+
"http://www.cbil.upenn.edu/cgi-bin/tess/tess?request=FCT-DBRTRV-Accno&key=$id"
|
|
3359
|
+
end
|
|
3360
|
+
|
|
3361
|
+
def self.tgd
|
|
3362
|
+
"http://phage.bioc.tulane.edu/cgi-bin/gbrowse/$id?name=$id"
|
|
3363
|
+
end
|
|
3364
|
+
|
|
3365
|
+
def self.tgdb
|
|
3366
|
+
"http://www.tumor-gene.org/cgi-bin/TGDB/tgdb_fetch_gene.cgi?gene=$id"
|
|
3367
|
+
end
|
|
3368
|
+
|
|
3369
|
+
def self.tgi
|
|
3370
|
+
"http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=$id"
|
|
3371
|
+
end
|
|
3372
|
+
|
|
3373
|
+
def self.tied
|
|
3374
|
+
"http://www.iedb.org/epId/$id"
|
|
3375
|
+
end
|
|
3376
|
+
|
|
3377
|
+
def self.tol
|
|
3378
|
+
"http://tolweb.org/$id"
|
|
3379
|
+
end
|
|
3380
|
+
|
|
3381
|
+
def self.tomatest_db
|
|
3382
|
+
"http://biosrv.cab.unina.it/solestdb/clusterview.php?clid=$id"
|
|
3383
|
+
end
|
|
3384
|
+
|
|
3385
|
+
def self.topdb
|
|
3386
|
+
"http://topdb.enzim.hu/?m=show&id=$id"
|
|
3387
|
+
end
|
|
3388
|
+
|
|
3389
|
+
def self.toxodb
|
|
3390
|
+
"http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
|
|
3391
|
+
end
|
|
3392
|
+
|
|
3393
|
+
def self.tpdb
|
|
3394
|
+
"http://tpdb.medchem.ku.edu:8080/protein_database/protein_details.jsp?prot_id=$id"
|
|
3395
|
+
end
|
|
3396
|
+
|
|
3397
|
+
def self.tpmd
|
|
3398
|
+
"http://tpmd2.nhri.org.tw/tpmd/php-bin/filter.php?search=$id"
|
|
3399
|
+
end
|
|
3400
|
+
|
|
3401
|
+
def self.tptad
|
|
3402
|
+
"http://plantta.jcvi.org/cgi-bin/plantta_report.pl?ta=$id"
|
|
3403
|
+
end
|
|
3404
|
+
|
|
3405
|
+
def self.transfactomedb
|
|
3406
|
+
"http://bussemaker.bio.columbia.edu:8080/ytdb-cgi/[?RNA/?DNA]/ViewPSAM?ms=[?RNA/?DNA]&M=$id"
|
|
3407
|
+
end
|
|
3408
|
+
|
|
3409
|
+
def self.transportdb
|
|
3410
|
+
"http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$id"
|
|
3411
|
+
end
|
|
3412
|
+
|
|
3413
|
+
def self.transterm
|
|
3414
|
+
"http://mrna.otago.ac.nz/cgi-bin/tt_data_browse/RNAMotif?PatID=$id"
|
|
3415
|
+
end
|
|
3416
|
+
|
|
3417
|
+
def self.tred
|
|
3418
|
+
"http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$id"
|
|
3419
|
+
end
|
|
3420
|
+
|
|
3421
|
+
def self.treefam
|
|
3422
|
+
"http://www.treefam.org/cgi-bin/TFinfo.pl?ac=$id"
|
|
3423
|
+
end
|
|
3424
|
+
|
|
3425
|
+
def self.trmp
|
|
3426
|
+
"http://bidd.nus.edu.sg/group/pathway/$id"
|
|
3427
|
+
end
|
|
3428
|
+
|
|
3429
|
+
def self.trnadbce
|
|
3430
|
+
"http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$id"
|
|
3431
|
+
end
|
|
3432
|
+
|
|
3433
|
+
def self.tto
|
|
3434
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3435
|
+
end
|
|
3436
|
+
|
|
3437
|
+
def self.tuberculist
|
|
3438
|
+
"http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id"
|
|
3439
|
+
end
|
|
3440
|
+
|
|
3441
|
+
def self.uagb
|
|
3442
|
+
"http://archaea.ucsc.edu/cgi-bin/hgGateway?db=$id"
|
|
3443
|
+
end
|
|
3444
|
+
|
|
3445
|
+
def self.ugmicrosatdb
|
|
3446
|
+
"http://www.veenuash.info/veenu/chromo.asp?ns=$id"
|
|
3447
|
+
end
|
|
3448
|
+
|
|
3449
|
+
def self.uniref
|
|
3450
|
+
"http://www.uniprot.org/uniref/$id"
|
|
3451
|
+
end
|
|
3452
|
+
|
|
3453
|
+
def self.unprot_keywords
|
|
3454
|
+
"http://www.uniprot.org/keywords/$id"
|
|
3455
|
+
end
|
|
3456
|
+
|
|
3457
|
+
def self.utrdb_utrsite
|
|
3458
|
+
"http://utrdb.ba.itb.cnr.it/getgene/$id"
|
|
3459
|
+
end
|
|
3460
|
+
|
|
3461
|
+
def self.utrome
|
|
3462
|
+
"http://128.122.61.5/cgi-bin/UTRome/utrome.cgi?action=gene&geneid=$id"
|
|
3463
|
+
end
|
|
3464
|
+
|
|
3465
|
+
def self.vega
|
|
3466
|
+
"http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$id"
|
|
3467
|
+
end
|
|
3468
|
+
|
|
3469
|
+
def self.vfdb
|
|
3470
|
+
"http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id"
|
|
3471
|
+
end
|
|
3472
|
+
|
|
3473
|
+
def self.viperdb
|
|
3474
|
+
"http://viperdb.scripps.edu/info_page.php?VDB=$id"
|
|
3475
|
+
end
|
|
3476
|
+
|
|
3477
|
+
def self.virmirdb
|
|
3478
|
+
"http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$id"
|
|
3479
|
+
end
|
|
3480
|
+
|
|
3481
|
+
def self.viroligo
|
|
3482
|
+
"http://viroligo.okstate.edu/main.php?vid=$id"
|
|
3483
|
+
end
|
|
3484
|
+
|
|
3485
|
+
def self.vita
|
|
3486
|
+
"http://vita.mbc.nctu.edu.tw/search.php?acc=$id"
|
|
3487
|
+
end
|
|
3488
|
+
|
|
3489
|
+
def self.vkcdb
|
|
3490
|
+
"http://vkcdb.biology.ualberta.ca/cgi-bin/vkcdb/vkcdb-scp/entry.cgi?vkcid=$id"
|
|
3491
|
+
end
|
|
3492
|
+
|
|
3493
|
+
def self.vmd
|
|
3494
|
+
"http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?ID=$id"
|
|
3495
|
+
end
|
|
3496
|
+
|
|
3497
|
+
def self.vz
|
|
3498
|
+
"http://viralzone.expasy.org/all_by_protein/$id.html"
|
|
3499
|
+
end
|
|
3500
|
+
|
|
3501
|
+
def self.wbbt
|
|
3502
|
+
"http://wormbase.org/db/ontology/anatomy?name=$id"
|
|
3503
|
+
end
|
|
3504
|
+
|
|
3505
|
+
def self.wbls
|
|
3506
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3507
|
+
end
|
|
3508
|
+
|
|
3509
|
+
def self.wbphenotype
|
|
3510
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3511
|
+
end
|
|
3512
|
+
|
|
3513
|
+
def self.webelements
|
|
3514
|
+
"http://webelements.com/$id"
|
|
3515
|
+
end
|
|
3516
|
+
|
|
3517
|
+
def self.wfleabase
|
|
3518
|
+
"http://wfleabase.org/genepage/daphnia/$id"
|
|
3519
|
+
end
|
|
3520
|
+
|
|
3521
|
+
def self.world2dpage
|
|
3522
|
+
"http://world-2dpage.expasy.org/repository/database=$id"
|
|
3523
|
+
end
|
|
3524
|
+
|
|
3525
|
+
def self.wormbase_gene
|
|
3526
|
+
"http://www.wormbase.org/species/c_elegans/gene/$id"
|
|
3527
|
+
end
|
|
3528
|
+
|
|
3529
|
+
def self.wormbase_rnai
|
|
3530
|
+
"http://www.wormbase.org/species/c_elegans/rnai/$id"
|
|
3531
|
+
end
|
|
3532
|
+
|
|
3533
|
+
def self.wormbook
|
|
3534
|
+
"http://www.wormbook.org/chapters/$id"
|
|
3535
|
+
end
|
|
3536
|
+
|
|
3537
|
+
def self.xao
|
|
3538
|
+
"http://www.xenbase.org/anatomy/static/organs/$id.jsp"
|
|
3539
|
+
end
|
|
3540
|
+
|
|
3541
|
+
def self.ycmn_complex
|
|
3542
|
+
"http://www.comp-sys-bio.org/yeastnet/v4/showComplexes.php?complex_id=$id"
|
|
3543
|
+
end
|
|
3544
|
+
|
|
3545
|
+
def self.ycmn_compound
|
|
3546
|
+
"http://www.comp-sys-bio.org/yeastnet/v4/showCompounds.php?cpd_id=$id"
|
|
3547
|
+
end
|
|
3548
|
+
|
|
3549
|
+
def self.ycmn_gene
|
|
3550
|
+
"http://www.comp-sys-bio.org/yeastnet/v4/showGenes.php?gene_id=$id"
|
|
3551
|
+
end
|
|
3552
|
+
|
|
3553
|
+
def self.ycmn_protein
|
|
3554
|
+
"http://www.comp-sys-bio.org/yeastnet/v4/showProteins.php?protein_id=$id"
|
|
3555
|
+
end
|
|
3556
|
+
|
|
3557
|
+
def self.ycmn_reaction
|
|
3558
|
+
"http://www.comp-sys-bio.org/yeastnet/v4/showEvents.php?event_id=$id"
|
|
3559
|
+
end
|
|
3560
|
+
|
|
3561
|
+
def self.yeastfunc
|
|
3562
|
+
"http://func.med.harvard.edu/yeast/genes/list_functional_scores/$id"
|
|
3563
|
+
end
|
|
3564
|
+
|
|
3565
|
+
def self.yeastract
|
|
3566
|
+
"http://www.yeastract.com/view.php?existing=locus&orfname=$id"
|
|
3567
|
+
end
|
|
3568
|
+
|
|
3569
|
+
def self.ygob
|
|
3570
|
+
"http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$id"
|
|
3571
|
+
end
|
|
3572
|
+
|
|
3573
|
+
def self.yh_database
|
|
3574
|
+
"http://yh.genomics.org.cn/mapview.jsp?path=$id"
|
|
3575
|
+
end
|
|
3576
|
+
|
|
3577
|
+
def self.yrc
|
|
3578
|
+
"http://www.yeastrc.org/pdr/viewProtein.do?id=$id"
|
|
3579
|
+
end
|
|
3580
|
+
|
|
3581
|
+
def self.ysd
|
|
3582
|
+
"http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/$id.php"
|
|
3583
|
+
end
|
|
3584
|
+
|
|
3585
|
+
def self.zfa
|
|
3586
|
+
"http://purl.obolibrary.org/obo/$id"
|
|
3587
|
+
end
|
|
3588
|
+
|
|
3589
|
+
def self.zifdb
|
|
3590
|
+
"http://bindr.gdcb.iastate.edu:8080/ZiFDB/controller/checkArticle?artId=$id"
|
|
3591
|
+
end
|
|
3592
|
+
|
|
3593
|
+
end
|
|
3594
|
+
|
|
3595
|
+
end
|