biointerchange 1.0.1 → 1.0.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. checksums.yaml +4 -4
  2. data/.travis.yml +2 -4
  3. data/Gemfile +2 -3
  4. data/README.md +36 -22
  5. data/VERSION +1 -1
  6. data/examples/Felis_catus.gvf.gz +0 -0
  7. data/examples/Felis_catus_incl_consequences.vcf.gz +0 -0
  8. data/generators/rdfxml.rb +1 -1
  9. data/generators/tsv2rubyclass.rb +31 -0
  10. data/lib/biointerchange/core.rb +17 -5
  11. data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +591 -137
  12. data/lib/biointerchange/genomics/gff3_reader.rb +16 -3
  13. data/lib/biointerchange/genomics/gvf_reader.rb +1 -1
  14. data/lib/biointerchange/genomics/vcf_feature.rb +46 -0
  15. data/lib/biointerchange/genomics/vcf_feature_set.rb +14 -0
  16. data/lib/biointerchange/genomics/vcf_reader.rb +238 -0
  17. data/lib/biointerchange/gfvo.rb +689 -553
  18. data/lib/biointerchange/life_science_registry.rb +3595 -0
  19. data/lib/biointerchange/textmining/text_mining_rdf_ntriples.rb +33 -35
  20. data/lib/biointerchange/writer.rb +11 -16
  21. data/make.sh +4 -0
  22. data/spec/exceptions_spec.rb +1 -7
  23. data/spec/gff3_rdfwriter_spec.rb +2 -16
  24. data/spec/gvf_rdfwriter_spec.rb +2 -19
  25. data/spec/phylogenetics_spec.rb +1 -13
  26. data/spec/text_mining_pdfx_xml_reader_spec.rb +1 -13
  27. data/spec/text_mining_pubannos_json_reader_spec.rb +1 -14
  28. data/spec/text_mining_rdfwriter_spec.rb +8 -19
  29. data/test.sh +4 -0
  30. data/web/about.html +10 -14
  31. data/web/api.html +11 -13
  32. data/web/bootstrap/css/bootstrap-theme.css +347 -0
  33. data/web/bootstrap/css/bootstrap-theme.css.map +1 -0
  34. data/web/bootstrap/css/bootstrap-theme.min.css +7 -0
  35. data/web/bootstrap/css/bootstrap.css +4764 -4603
  36. data/web/bootstrap/css/bootstrap.css.map +1 -0
  37. data/web/bootstrap/css/bootstrap.min.css +6 -8
  38. data/web/bootstrap/fonts/glyphicons-halflings-regular.eot +0 -0
  39. data/web/bootstrap/fonts/glyphicons-halflings-regular.svg +229 -0
  40. data/web/bootstrap/fonts/glyphicons-halflings-regular.ttf +0 -0
  41. data/web/bootstrap/fonts/glyphicons-halflings-regular.woff +0 -0
  42. data/web/bootstrap/js/bootstrap.js +1372 -1448
  43. data/web/bootstrap/js/bootstrap.min.js +5 -5
  44. data/web/cli.html +14 -28
  45. data/web/index.html +15 -33
  46. data/web/ontologies.html +1089 -945
  47. data/web/webservices.html +12 -14
  48. metadata +24 -27
  49. data/lib/biointerchange/gff3o.rb +0 -525
  50. data/lib/biointerchange/gvf1o.rb +0 -1354
  51. data/web/bootstrap/css/bootstrap-responsive.css +0 -1040
  52. data/web/bootstrap/css/bootstrap-responsive.min.css +0 -9
  53. data/web/bootstrap/img/glyphicons-halflings-white.png +0 -0
  54. data/web/bootstrap/img/glyphicons-halflings.png +0 -0
@@ -0,0 +1,3595 @@
1
+ module BioInterchange
2
+
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+ class LifeScienceRegistry
4
+
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+ def self.bind
6
+ "http://www.bind.ca/Action?identifier=bindid&idsearch=$id"
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+ end
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+
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+ def self.chebi
10
+ "http://www.ebi.ac.uk/chebi/searchId.do?chebiId=$id"
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+ end
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+
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+ def self.ensembl
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+ "http://www.ensembl.org/id/$id"
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+ end
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+
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+ def self.ec
18
+ "http://www.chem.qmul.ac.uk/iubmb/$id"
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+ end
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+
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+ def self.uniprot
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+ "http://www.uniprot.org/uniprot/$id"
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+ end
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+
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+ def self.taxonomy
26
+ "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$id"
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+ end
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+
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+ def self.biomodels
30
+ "http://www.ebi.ac.uk/biomodels-main/$id"
31
+ end
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+
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+ def self.miriam_collection
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+ "http://www.ebi.ac.uk/miriam/main/$id"
35
+ end
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+
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+ def self.icd
38
+ "http://apps.who.int/classifications/icd10/browse/2010/en#/$id"
39
+ end
40
+
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+ def self.intact
42
+ "http://www.ebi.ac.uk/intact/pages/details/details.xhtml?interactionAc=$id"
43
+ end
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+
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+ def self.interpro
46
+ "http://www.ebi.ac.uk/interpro/IEntry?ac=$id"
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+ end
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+
49
+ def self.kegg_pathway
50
+ "http://www.genome.jp/dbget-bin/www_bget?map$id"
51
+ end
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+
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+ def self.kegg_compound
54
+ "http://www.genome.jp/dbget-bin/www_bget?cpd:$id"
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+ end
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+
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+ def self.kegg_reaction
58
+ "http://www.genome.jp/dbget-bin/www_bget?rn:$id"
59
+ end
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+
61
+ def self.medline
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+ "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-view+MedlineFull+[medline-PMID:$id] "
63
+ end
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+
65
+ def self.pubmed
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+ "http://www.ncbi.nlm.nih.gov/pubmed/$id"
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+ end
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+
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+ def self.omim
70
+ "http://www.ncbi.nlm.nih.gov/omim/$id"
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+ end
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+
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+ def self.pirsf
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+ "http://pir.georgetown.edu/cgi-bin/ipcSF?id=$id"
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+ end
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+
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+ def self.reactome
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+ "http://www.reactome.org/cgi-bin/eventbrowser_st_id?FROM_REACTOME=1&ST_ID=$id"
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+ end
80
+
81
+ def self.doi
82
+ "http://dx.doi.org/$id"
83
+ end
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+
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+ def self.pdb
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+ "http://www.rcsb.org/pdb/explore/explore.do?structureId=$id"
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+ end
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+
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+ def self.go
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+ "http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:$id"
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+ end
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+
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+ def self.sgd
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+ "http://db.yeastgenome.org/cgi-bin/locus.pl?dbid=$id"
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+ end
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+
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+ def self.sbo
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+ "http://www.ebi.ac.uk/sbo/main/$id"
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+ end
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+
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+ def self.kegg_drug
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+ "http://www.genome.jp/dbget-bin/www_bget?dr:$id"
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+ end
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+
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+ def self.kegg_glycan
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+ "http://www.genome.jp/dbget-bin/www_bget?gl:$id"
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+ end
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+
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+ def self.pfam
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+ "http://pfam.sanger.ac.uk/family?entry=$id"
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+ end
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+
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+ def self.flybase
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+ "http://flybase.org/reports/$id.html"
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+ end
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+
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+ def self.wormpep
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+ "http://www.wormbase.org/db/seq/protein?name=$id"
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+ end
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+
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+ def self.prosite
122
+ "http://www.expasy.org/cgi-bin/nicesite.pl?$id"
123
+ end
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+
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+ def self.pubchem_substance
126
+ "http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=$id"
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+ end
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+
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+ def self.pubchem_compound
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+ "http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?db=pccompound&term=$id"
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+ end
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+
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+ def self.arxiv
134
+ "http://arxiv.org/abs/$id"
135
+ end
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+
137
+ def self.arrayexpress
138
+ "http://www.ebi.ac.uk/arrayexpress/experiments/$id"
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+ end
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+
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+ def self.mgi
142
+ "http://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:$id"
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+ end
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+
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+ def self.sabiork_reaction
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+ "http://sabiork.h-its.org/index2.jsp?reac=$id"
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+ end
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+
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+ def self.tcdb
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+ "http://www.tcdb.org/search/result.php?tc=$id"
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+ end
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+
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+ def self.uniparc
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+ "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$id"
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+ end
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+
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+ def self.mint
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+ "http://mint.bio.uniroma2.it/mint/search/interactor.do?queryType=protein&interactorAc=$id"
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+ end
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+
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+ def self.ipi
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+ "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$id&format=default"
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+ end
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+
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+ def self.dip
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+ "http://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$id"
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+ end
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+
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+ def self.signaling_gateway
170
+ "http://www.signaling-gateway.org/molecule/query?afcsid=$id"
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+ end
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+
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+ def self.resid
174
+ "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-id+6JSUg1NA6u4+-e+[RESID:'$id']"
175
+ end
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+
177
+ def self.rgd
178
+ "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id"
179
+ end
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+
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+ def self.tair_protein
182
+ "http://arabidopsis.org/servlets/TairObject?accession=$id"
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+ end
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+
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+ def self.tair_gene
186
+ "http://arabidopsis.org/servlets/TairObject?accession=$id"
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+ end
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+
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+ def self.tair_locus
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+ "http://arabidopsis.org/servlets/TairObject?type=locus&name=$id"
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+ end
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+
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+ def self.hmdb
194
+ "http://www.hmdb.ca/metabolites/$id"
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+ end
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+
197
+ def self.lipidmaps
198
+ "http://www.lipidmaps.org/data/get_lm_lipids_dbgif.php?LM_ID=$id"
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+ end
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+
201
+ def self.peptideatlas
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+ "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/GetProtein?atlas_build_id=242&protein_name=$id&action=QUERY"
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+ end
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+
205
+ def self.geo
206
+ "http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=$id"
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+ end
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+
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+ def self.eco
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+ "http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
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+ end
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+
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+ def self.sgd_pathways
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+ "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$id"
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+ end
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+
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+ def self.biogrid
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+ "http://thebiogrid.org/$id"
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+ end
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+
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+ def self.merops
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+ "http://merops.sanger.ac.uk/cgi-bin/pepsum?id=$id"
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+ end
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+
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+ def self.panther
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+ "http://www.pantherdb.org/panther/family.do?clsAccession=$id"
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+ end
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+
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+ def self.panther_family
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+ "http://www.pantherdb.org/panther/family.do?clsAccession=$id"
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+ end
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+
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+ def self.sprint
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+ "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$id&display_opts=Prints&category=None&queryform=false&regexpr=off"
235
+ end
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+
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+ def self.ligandexpo
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+ "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$id&operation=ccid"
239
+ end
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+
241
+ def self.aclame
242
+ "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=$id"
243
+ end
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+
245
+ def self.isbn
246
+ "http://isbndb.com/search-all.html?kw=$id"
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+ end
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+
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+ def self.pride
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+ "http://www.ebi.ac.uk/pride/experimentLink.do?experimentAccessionNumber=$id"
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+ end
252
+
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+ def self.matrixdb
254
+ "http://matrixdb.ibcp.fr/cgi-bin/model/report/default?name=$id&class=Association"
255
+ end
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+
257
+ def self.ncbigene
258
+ "http://www.ncbi.nlm.nih.gov/gene/$id"
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+ end
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+
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+ def self.kegg_gene
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+ "http://www.genome.jp/dbget-bin/www_bget?[?species]:$id"
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+ end
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+
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+ def self.brenda
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+ "http://www.brenda-enzymes.org/php/result_flat.php4?ecno=$id"
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+ end
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+
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+ def self.pubchem_bioassay
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+ "http://pubchem.ncbi.nlm.nih.gov/assay/assay.cgi?aid=$id"
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+ end
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+
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+ def self.pathwaycommons
274
+ "http://www.pathwaycommons.org/pc/record2.do?id=$id"
275
+ end
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+
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+ def self.hovergen
278
+ "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$id&db=HOVERGEN"
279
+ end
280
+
281
+ def self.mmmp
282
+ "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$id"
283
+ end
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+
285
+ def self.wikipathways
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+ "http://www.wikipathways.org/index.php/Pathway:$id"
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+ end
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+
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+ def self.macie
290
+ "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/getPage.pl?id=$id"
291
+ end
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+
293
+ def self.mirbase
294
+ "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$id"
295
+ end
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+
297
+ def self.zfin
298
+ "http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=$id"
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+ end
300
+
301
+ def self.hgnc_id
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+ "http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id"
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+ end
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+
305
+ def self.so
306
+ "http://www.sequenceontology.org/miso/current_release/term/$id"
307
+ end
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+
309
+ def self.rhea
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+ "http://www.ebi.ac.uk/rhea//reaction.xhtml?id=$id"
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+ end
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+
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+ def self.unipathway
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+ "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$id"
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+ end
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+
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+ def self.chembl_compound
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+ "https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id"
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+ end
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+
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+ def self.chembl_target
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+ "https://www.ebi.ac.uk/chembldb/index.php/target/inspect/$id"
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+ end
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+
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+ def self.sabiork_kinetic
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+ "http://sabiork.h-its.org/kineticLawEntry.jsp?kinlawid=$id"
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+ end
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+
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+ def self.lgicdb
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+ "http://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$id.php"
331
+ end
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+
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+ def self.atc
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+ "http://www.whocc.no/atc_ddd_index/?code=$id"
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+ end
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+
337
+ def self.pharmgkb_pathways
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+ "http://www.pharmgkb.org/pathway/$id"
339
+ end
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+
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+ def self.pharmgkb_disease
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+ "http://www.pharmgkb.org/disease/$id"
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+ end
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+
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+ def self.pharmgkb_drug
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+ "http://www.pharmgkb.org/drug/$id"
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+ end
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+
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+ def self.ttd_drug
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+ "http://bidd.nus.edu.sg/group/cjttd/ZFTTDDRUG.asp?ID=$id"
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+ end
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+
353
+ def self.ttd_target
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+ "http://bidd.nus.edu.sg/group/cjttd/ZFTTDDetail.asp?ID=$id"
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+ end
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+
357
+ def self.neurondb
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+ "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$id"
359
+ end
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+
361
+ def self.neuromorpho
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+ "http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=$id"
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+ end
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+
365
+ def self.chemidplus
366
+ "http://chem.sis.nlm.nih.gov/chemidplus/direct.jsp?regno=$id"
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+ end
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+
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+ def self.biosystems
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+ "http://www.ncbi.nlm.nih.gov/biosystems/$id"
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+ end
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+
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+ def self.ctd
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+ "http://ctd.mdibl.org/detail.go?type=chem&acc=$id"
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+ end
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+
377
+ def self.bionumbers
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+ "http://www.bionumbers.hms.harvard.edu/bionumber.aspx?s=y&id=$id&ver=1"
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+ end
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+
381
+ def self.drugbank
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+ "http://www.drugbank.ca/drugs/$id"
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+ end
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+
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+ def self.t3db
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+ "http://www.t3db.org/toxins/$id"
387
+ end
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+
389
+ def self.smpdb
390
+ "http://pathman.smpdb.ca/pathways/$id/pathway"
391
+ end
392
+
393
+ def self.phosphosite_protein
394
+ "http://www.phosphosite.org/proteinAction.do?id=$id"
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+ end
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+
397
+ def self.genedb
398
+ "http://www.genedb.org/gene/$id"
399
+ end
400
+
401
+ def self.pato
402
+ "http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
403
+ end
404
+
405
+ def self.ccd
406
+ "http://www.ebi.ac.uk/msd-srv/msdchem/cgi-bin/cgi.pl?FUNCTION=record&ENTITY=CHEM_COMP&PRIMARYKEY=$id&APPLICATION=1"
407
+ end
408
+
409
+ def self.glycomedb
410
+ "http://www.glycome-db.org/database/showStructure.action?glycomeId=$id"
411
+ end
412
+
413
+ def self.lipidbank
414
+ "http://lipidbank.jp/cgi-bin/detail.cgi?id=$id"
415
+ end
416
+
417
+ def self.kegg_orthology
418
+ "http://www.genome.jp/dbget-bin/www_bget?ko:$id"
419
+ end
420
+
421
+ def self.prodom
422
+ "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$id"
423
+ end
424
+
425
+ def self.smart
426
+ "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$id"
427
+ end
428
+
429
+ def self.cdd
430
+ "http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$id"
431
+ end
432
+
433
+ def self.mmdb
434
+ "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$id"
435
+ end
436
+
437
+ def self.imex
438
+ "http://www.ebi.ac.uk/intact/imex/main.xhtml?query=$id"
439
+ end
440
+
441
+ def self.irefweb
442
+ "http://wodaklab.org/iRefWeb/interaction/show/$id"
443
+ end
444
+
445
+ def self.mpi
446
+ "http://www.jcvi.org/mpidb/interaction.php?pname=$id"
447
+ end
448
+
449
+ def self.phosphosite_residue
450
+ "http://www.phosphosite.org/siteAction.do?id=$id"
451
+ end
452
+
453
+ def self.neurolex
454
+ "http://www.neurolex.org/wiki/$id"
455
+ end
456
+
457
+ def self.nif_subcellular
458
+ "http://www.neurolex.org/wiki/Category:$id"
459
+ end
460
+
461
+ def self.obi
462
+ "http://purl.obolibrary.org/obo/$id"
463
+ end
464
+
465
+ def self.sabiork_ec
466
+ "http://sabiork.h-its.org/index2.jsp?EC=$id"
467
+ end
468
+
469
+ def self.jws
470
+ "http://jjj.mib.ac.uk/cgi-bin/processModelSelection.py?keytype=modelname&keyword=$id"
471
+ end
472
+
473
+ def self.modeldb
474
+ "http://senselab.med.yale.edu/ModelDB/ShowModel.asp?model=$id"
475
+ end
476
+
477
+ def self.subtiwiki
478
+ "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$id"
479
+ end
480
+
481
+ def self.pid
482
+ "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$id"
483
+ end
484
+
485
+ def self.doqcs_model
486
+ "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$id"
487
+ end
488
+
489
+ def self.doqcs_pathway
490
+ "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$id"
491
+ end
492
+
493
+ def self.uo
494
+ "http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
495
+ end
496
+
497
+ def self.clinicaltrials
498
+ "http://clinicaltrials.gov/ct2/show/$id"
499
+ end
500
+
501
+ def self.chemspider
502
+ "http://www.chemspider.com/Chemical-Structure.$id.html"
503
+ end
504
+
505
+ def self.ncit
506
+ "http://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=$id"
507
+ end
508
+
509
+ def self.biocatalogue
510
+ "http://www.biocatalogue.org/services/$id"
511
+ end
512
+
513
+ def self.pr
514
+ "http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=$id"
515
+ end
516
+
517
+ def self.omia
518
+ "http://omia.angis.org.au/retrieve.shtml?pid=$id"
519
+ end
520
+
521
+ def self.chembank
522
+ "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$id"
523
+ end
524
+
525
+ def self.csa
526
+ "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/CSA/CSA_Site_Wrapper.pl?pdb=$id"
527
+ end
528
+
529
+ def self.cgd
530
+ "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$id"
531
+ end
532
+
533
+ def self.antweb
534
+ "http://www.antweb.org/specimen.do?name=$id"
535
+ end
536
+
537
+ def self.pmc
538
+ "http://www.ncbi.nlm.nih.gov/pmc/articles/$id/?tool=pmcentrez"
539
+ end
540
+
541
+ def self.amoebadb
542
+ "http://amoebadb.org/amoeba/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
543
+ end
544
+
545
+ def self.cryptodb
546
+ "http://cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
547
+ end
548
+
549
+ def self.plasmodb
550
+ "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id&project_id=PlasmoDB"
551
+ end
552
+
553
+ def self.giardiadb
554
+ "http://giardiadb.org/giardiadb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&primary_key=$id"
555
+ end
556
+
557
+ def self.microsporidia
558
+ "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
559
+ end
560
+
561
+ def self.toxoplasma
562
+ "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
563
+ end
564
+
565
+ def self.trichdb
566
+ "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
567
+ end
568
+
569
+ def self.tritrypdb
570
+ "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
571
+ end
572
+
573
+ def self.bdgp
574
+ "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$id"
575
+ end
576
+
577
+ def self.beetlebase
578
+ "http://www.beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$id"
579
+ end
580
+
581
+ def self.bold
582
+ "http://www.barcodinglife.com/views/taxbrowser.php?taxid=$id"
583
+ end
584
+
585
+ def self.dbest
586
+ "http://www.ncbi.nlm.nih.gov/nucest/$id"
587
+ end
588
+
589
+ def self.dbprobe
590
+ "http://www.ncbi.nlm.nih.gov/genome/probe/reports/probereport.cgi?uid=$id"
591
+ end
592
+
593
+ def self.dbsnp
594
+ "http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$id"
595
+ end
596
+
597
+ def self.ecogene
598
+ "http://ecogene.org/geneInfo.php?eg_id=$id"
599
+ end
600
+
601
+ def self.gabi
602
+ "http://gabi.rzpd.de/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$id&Mode=ShowBioObject"
603
+ end
604
+
605
+ def self.greengenes
606
+ "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$id"
607
+ end
608
+
609
+ def self.grin_taxonomy
610
+ "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$id"
611
+ end
612
+
613
+ def self.hinv_locus
614
+ "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$id"
615
+ end
616
+
617
+ def self.hinv_transcript
618
+ "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$id"
619
+ end
620
+
621
+ def self.hinv_protein
622
+ "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$id"
623
+ end
624
+
625
+ def self.homd_seq
626
+ "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$id"
627
+ end
628
+
629
+ def self.homd_taxon
630
+ "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic"
631
+ end
632
+
633
+ def self.ird_segment
634
+ "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$id"
635
+ end
636
+
637
+ def self.isfinder
638
+ "http://www-is.biotoul.fr/index.html?is_special_name=$id"
639
+ end
640
+
641
+ def self.jcm
642
+ "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$id"
643
+ end
644
+
645
+ def self.img_taxon
646
+ "http://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=TaxonDetail&taxon_oid=$id"
647
+ end
648
+
649
+ def self.img_gene
650
+ "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$id"
651
+ end
652
+
653
+ def self.maizegdb
654
+ "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$id"
655
+ end
656
+
657
+ def self.mycobank
658
+ "http://www.mycobank.org/MycoTaxo.aspx?Link=T&Rec=$id"
659
+ end
660
+
661
+ def self.nbrc
662
+ "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$id"
663
+ end
664
+
665
+ def self.pseudomonas
666
+ "http://www.pseudomonas.com/getAnnotation.do?locusID=$id"
667
+ end
668
+
669
+ def self.gramene_protein
670
+ "http://www.gramene.org/db/ontology/search?id=$id"
671
+ end
672
+
673
+ def self.gramene_gene
674
+ "http://www.gramene.org/db/genes/search_gene?acc=$id"
675
+ end
676
+
677
+ def self.gramene_taxonomy
678
+ "http://www.gramene.org/db/ontology/search?id=$id"
679
+ end
680
+
681
+ def self.gramene_qtl
682
+ "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$id"
683
+ end
684
+
685
+ def self.sgn
686
+ "http://solgenomics.net/phenome/locus_display.pl?locus_id=$id"
687
+ end
688
+
689
+ def self.xenbase
690
+ "http://www.xenbase.org/gene/showgene.do?method=display&geneId=$id"
691
+ end
692
+
693
+ def self.bioportal
694
+ "http://bioportal.bioontology.org/ontologies/$id"
695
+ end
696
+
697
+ def self.miriam_resource
698
+ "http://www.ebi.ac.uk/miriam/main/resources/$id"
699
+ end
700
+
701
+ def self.edam
702
+ "http://www.ebi.ac.uk/ontology-lookup/?termId=$id"
703
+ end
704
+
705
+ def self.pmdb
706
+ "http://mi.caspur.it/PMDB/user/search.php?idsearch=$id"
707
+ end
708
+
709
+ def self.a_2dbaseecoli
710
+ "http://2dbase.techfak.uni-bielefeld.de/cgi-bin/2d/2d.cgi?ac=$id"
711
+ end
712
+
713
+ def self.agd
714
+ "http://agd.vital-it.ch/Ashbya_gossypii/geneview?gene=$id"
715
+ end
716
+
717
+ def self.arachnoserver
718
+ "http://www.arachnoserver.org/toxincard.html?id=$id"
719
+ end
720
+
721
+ def self.biocyc
722
+ "http://biocyc.org/ECOLI/NEW-IMAGE?object=$id"
723
+ end
724
+
725
+ def self.cazy
726
+ "http://www.cazy.org/$id.html"
727
+ end
728
+
729
+ def self.goa
730
+ "http://www.ebi.ac.uk/QuickGO/GTerm?id=$id"
731
+ end
732
+
733
+ def self.paleodb
734
+ "http://paleodb.geology.wisc.edu/cgi-bin/bridge.pl?a=basicTaxonInfo&taxon_no=$id"
735
+ end
736
+
737
+ def self.compulyeast
738
+ "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id"
739
+ end
740
+
741
+ def self.disprot
742
+ "http://www.disprot.org/protein.php?id=$id"
743
+ end
744
+
745
+ def self.echobase
746
+ "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id"
747
+ end
748
+
749
+ def self.eggnog
750
+ "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$id"
751
+ end
752
+
753
+ def self.ensembl_bacteria
754
+ "http://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=$id"
755
+ end
756
+
757
+ def self.ensembl_protist
758
+ "http://protists.ensembl.org/[?species_name]/Gene/Summary?g=$id"
759
+ end
760
+
761
+ def self.ensembl_metazoa
762
+ "http://metazoa.ensembl.org/[?species_name]/Gene/Summary?g=$id"
763
+ end
764
+
765
+ def self.ensembl_plant
766
+ "http://plants.ensembl.org/[?species_name]/Gene/Summary?g=$id"
767
+ end
768
+
769
+ def self.ensembl_fungi
770
+ "http://fungi.ensembl.org/[?species_name]/Gene/Summary?g=$id"
771
+ end
772
+
773
+ def self.euhcvdb
774
+ "http://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$id"
775
+ end
776
+
777
+ def self.genatlas
778
+ "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$id"
779
+ end
780
+
781
+ def self.cath
782
+ "http://www.cathdb.info/cathnode/$id"
783
+ end
784
+
785
+ def self.genefarm
786
+ "http://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$id"
787
+ end
788
+
789
+ def self.gpcrdb
790
+ "http://www.gpcr.org/7tm/proteins/$id"
791
+ end
792
+
793
+ def self.hogenom
794
+ "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$id"
795
+ end
796
+
797
+ def self.genetree
798
+ "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$id"
799
+ end
800
+
801
+ def self.myco_tuber
802
+ "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id"
803
+ end
804
+
805
+ def self.myco_lepra
806
+ "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id"
807
+ end
808
+
809
+ def self.myco_marinum
810
+ "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$id"
811
+ end
812
+
813
+ def self.myco_smeg
814
+ "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$id"
815
+ end
816
+
817
+ def self.orphanet
818
+ "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=$id"
819
+ end
820
+
821
+ def self.orthodb
822
+ "http://cegg.unige.ch/orthodb3/results?searchtext=$id"
823
+ end
824
+
825
+ def self.peroxibase
826
+ "http://peroxibase.toulouse.inra.fr/listing.php?action=view&id=$id"
827
+ end
828
+
829
+ def self.pmap_substratedb
830
+ "http://substrate.burnham.org/protein/annotation/$id/html"
831
+ end
832
+
833
+ def self.pmap_cutdb
834
+ "http://www.proteolysis.org/proteases/m_summarypg/$id"
835
+ end
836
+
837
+ def self.protclustdb
838
+ "http://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=ShowDetailView&TermToSearch=$id"
839
+ end
840
+
841
+ def self.pmp
842
+ "http://www.proteinmodelportal.org/query/uniprot/$id"
843
+ end
844
+
845
+ def self.protonet_proteincard
846
+ "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$id"
847
+ end
848
+
849
+ def self.protonet_cluster
850
+ "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$id"
851
+ end
852
+
853
+ def self.rebase
854
+ "http://rebase.neb.com/rebase/enz/$id.html"
855
+ end
856
+
857
+ def self.swissmodel
858
+ "http://swissmodel.expasy.org/repository/smr.php?sptr_ac=$id"
859
+ end
860
+
861
+ def self.vectorbase
862
+ "http://www.vectorbase.org/[?species_name]/Gene/Summary?db=core;g=$id"
863
+ end
864
+
865
+ def self.do
866
+ "http://disease-ontology.org/term/$id"
867
+ end
868
+
869
+ def self.mirbase_mature
870
+ "http://www.mirbase.org/cgi-bin/mature.pl?mature_acc=$id"
871
+ end
872
+
873
+ def self.nextprot
874
+ "http://www.nextprot.org/db/entry/$id"
875
+ end
876
+
877
+ def self.cas
878
+ "http://commonchemistry.org/ChemicalDetail.aspx?ref=$id"
879
+ end
880
+
881
+ def self.kegg_genome
882
+ "http://www.genome.jp/dbget-bin/www_bget?gn:$id"
883
+ end
884
+
885
+ def self.kegg_metagenome
886
+ "http://www.genome.jp/kegg-bin/show_organism?org=$id"
887
+ end
888
+
889
+ def self.narcis
890
+ "http://www.narcis.nl/publication/RecordID/$id"
891
+ end
892
+
893
+ def self.jcsd
894
+ "http://nikkajiweb.jst.go.jp/nikkaji_web/pages/top_e.jsp?CONTENT=syosai&SN=$id"
895
+ end
896
+
897
+ def self.pw
898
+ "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=$id"
899
+ end
900
+
901
+ def self.scretf
902
+ "http://stormo.wustl.edu/ScerTF/details/$id/"
903
+ end
904
+
905
+ def self.pharmgkb_gene
906
+ "http://www.pharmgkb.org/gene/$id"
907
+ end
908
+
909
+ def self.mirnest
910
+ "http://lemur.amu.edu.pl/share/php/mirnest/search.php?search_term=$id"
911
+ end
912
+
913
+ def self.napp
914
+ "http://napp.u-psud.fr/Niveau2.php?specie=$id"
915
+ end
916
+
917
+ def self.noncode
918
+ "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$id"
919
+ end
920
+
921
+ def self.virsirna
922
+ "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$id"
923
+ end
924
+
925
+ def self.elm
926
+ "http://elm.eu.org/elms/elmPages/$id.html"
927
+ end
928
+
929
+ def self.mimodb
930
+ "http://immunet.cn/mimodb/browse.php?table=mimoset&ID=$id"
931
+ end
932
+
933
+ def self.sitex
934
+ "http://www-bionet.sscc.ru/sitex/index.php?siteid=$id"
935
+ end
936
+
937
+ def self.bykdb
938
+ "http://bykdb.ibcp.fr/data/html/$id.html"
939
+ end
940
+
941
+ def self.conoserver
942
+ "http://www.conoserver.org/?page=card&table=protein&id=$id"
943
+ end
944
+
945
+ def self.topfind
946
+ "http://clipserve.clip.ubc.ca/topfind/proteins/$id"
947
+ end
948
+
949
+ def self.mipmod
950
+ "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$id"
951
+ end
952
+
953
+ def self.cellimage
954
+ "http://cellimagelibrary.org/images/$id"
955
+ end
956
+
957
+ def self.combine_specifications
958
+ "http://co.mbine.org/specifications/$id"
959
+ end
960
+
961
+ def self.cygd
962
+ "http://mips.helmholtz-muenchen.de/genre/proj/yeast/singleGeneReport.html?entry=$id"
963
+ end
964
+
965
+ def self.huge
966
+ "http://www.kazusa.or.jp/huge/cgi/view_direct.cgi?id=$id"
967
+ end
968
+
969
+ def self.bindingdb
970
+ "http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=$id"
971
+ end
972
+
973
+ def self.abs
974
+ "http://genome.crg.es/datasets/abs2005/entries/$id.html"
975
+ end
976
+
977
+ def self.apd
978
+ "http://aps.unmc.edu/AP/database/query_output.php?ID=$id"
979
+ end
980
+
981
+ def self.chemdb
982
+ "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$id"
983
+ end
984
+
985
+ def self.dpvweb
986
+ "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$id"
987
+ end
988
+
989
+ def self.iuphar_receptor
990
+ "http://www.iuphar-db.org/GPCR/ReceptorDisplayForward?receptorID=$id"
991
+ end
992
+
993
+ def self.aceview_worm
994
+ "http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=[?species_database]&c=Gene&l=$id"
995
+ end
996
+
997
+ def self.asap
998
+ "https://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=$id"
999
+ end
1000
+
1001
+ def self.dictybase_gene
1002
+ "http://dictybase.org/db/cgi-bin/gene_page.pl?gene_name=$id"
1003
+ end
1004
+
1005
+ def self.worfdb
1006
+ "http://worfdb.dfci.harvard.edu/searchallwormorfs.pl?sid=$id"
1007
+ end
1008
+
1009
+ def self.nextdb
1010
+ "http://nematode.lab.nig.ac.jp/cgi-bin/dbest/SrchByCosmid.sh?csmd=$id"
1011
+ end
1012
+
1013
+ def self.pgn
1014
+ "http://pgn.cornell.edu/search/unigene_search_result.pl?unigene_id=$id"
1015
+ end
1016
+
1017
+ def self.hamap
1018
+ "http://us.expasy.org/unirule/$id"
1019
+ end
1020
+
1021
+ def self.rouge
1022
+ "http://www.kazusa.or.jp/rouge/gfpage/$id/"
1023
+ end
1024
+
1025
+ def self.cgsc
1026
+ "http://cgsc.biology.yale.edu/Site.php?ID=$id"
1027
+ end
1028
+
1029
+ def self.cog
1030
+ "http://www.ncbi.nlm.nih.gov/COG/grace/cogenome.cgi?g=$id"
1031
+ end
1032
+
1033
+ def self.dragondb_dna
1034
+ "http://antirrhinum.net/cgi-bin/ace/generic/seq/DragonDB?name=$id;class=Sequence"
1035
+ end
1036
+
1037
+ def self.dragondb_protein
1038
+ "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Peptide"
1039
+ end
1040
+
1041
+ def self.dragondb_locus
1042
+ "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Locus"
1043
+ end
1044
+
1045
+ def self.dragondb_allele
1046
+ "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$id;class=Allele"
1047
+ end
1048
+
1049
+ def self.nasc
1050
+ "http://arabidopsis.info/StockInfo?NASC_id=$id"
1051
+ end
1052
+
1053
+ def self.niaest
1054
+ "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$id"
1055
+ end
1056
+
1057
+ def self.pazar
1058
+ "http://www.pazar.info/cgi-bin/tf_search.cgi?searchtab=tfs&ID_list=PAZAR_TF&geneID=$id"
1059
+ end
1060
+
1061
+ def self.po
1062
+ "http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=$id"
1063
+ end
1064
+
1065
+ def self.rnamods
1066
+ "http://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?$id"
1067
+ end
1068
+
1069
+ def self.treebase
1070
+ "http://www.treebase.org/treebase-web/search/study/summary.html?id=$id"
1071
+ end
1072
+
1073
+ def self.cmr
1074
+ "http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenePage.cgi?locus=$id"
1075
+ end
1076
+
1077
+ def self.tigrfams
1078
+ "http://cmr.jcvi.org/cgi-bin/CMR/HmmReport.cgi?hmm_acc=$id"
1079
+ end
1080
+
1081
+ def self.iuphar_family
1082
+ "http://www.iuphar-db.org/DATABASE/FamilyIntroductionForward?familyId=$id"
1083
+ end
1084
+
1085
+ def self.mgiid
1086
+ "http://www.fp.ucalgary.ca/group2introns/$id.htm"
1087
+ end
1088
+
1089
+ def self.vbase2
1090
+ "http://www.vbase2.org/vgene.php?id=$id"
1091
+ end
1092
+
1093
+ def self.genecards
1094
+ "http://www.genecards.org/cgi-bin/carddisp.pl?gene=$id"
1095
+ end
1096
+
1097
+ def self.allergome
1098
+ "http://www.allergome.org/script/refArray_view.php?idMol=$id"
1099
+ end
1100
+
1101
+ def self.hpa
1102
+ "http://www.proteinatlas.org/gene_info.php?ensembl_gene_id=$id"
1103
+ end
1104
+
1105
+ def self.tarbase
1106
+ "http://diana.cslab.ece.ntua.gr/DianaToolsNew/index.php?r=tarbase/index&mirnas=$id"
1107
+ end
1108
+
1109
+ def self.ncbi_protein
1110
+ "http://www.ncbi.nlm.nih.gov/protein/$id"
1111
+ end
1112
+
1113
+ def self.unigene
1114
+ "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$id"
1115
+ end
1116
+
1117
+ def self.unite
1118
+ "http://unite.ut.ee/bl_forw.php?nimi=$id"
1119
+ end
1120
+
1121
+ def self.nucleardb
1122
+ "http://www.receptors.org/NR/seq/DR/$id.html"
1123
+ end
1124
+
1125
+ def self.superfamily
1126
+ "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=$id"
1127
+ end
1128
+
1129
+ def self.rgap
1130
+ "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$id"
1131
+ end
1132
+
1133
+ def self.panther_pathway
1134
+ "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$id"
1135
+ end
1136
+
1137
+ def self.oridb
1138
+ "http://www.oridb.org/details1.php?id=$id"
1139
+ end
1140
+
1141
+ def self.ena
1142
+ "http://www.ebi.ac.uk/ena/data/view/$id"
1143
+ end
1144
+
1145
+ def self.ccds
1146
+ "http://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$id"
1147
+ end
1148
+
1149
+ def self.gxa
1150
+ "http://www.ebi.ac.uk/gxa/gene/$id"
1151
+ end
1152
+
1153
+ def self.wikipedia
1154
+ "http://en.wikipedia.org/wiki/$id"
1155
+ end
1156
+
1157
+ def self.intenz
1158
+ "http://www.ebi.ac.uk/intenz/query?cmd=SearchID&id=$id"
1159
+ end
1160
+
1161
+ def self.uniprot_taxonomy
1162
+ "http://www.uniprot.org/taxonomy/$id"
1163
+ end
1164
+
1165
+ def self.citexplore
1166
+ "http://www.ebi.ac.uk/citexplore/citationDetails.do?dataSource=MED&externalId=$id"
1167
+ end
1168
+
1169
+ def self.pdbe
1170
+ "http://www.pdbe.org/$id"
1171
+ end
1172
+
1173
+ def self.embl
1174
+ "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-page+EntryPage+-e+[EMBL:$id]+-view+EmblEntry"
1175
+ end
1176
+
1177
+ def self.genbank
1178
+ "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id"
1179
+ end
1180
+
1181
+ def self.hubmed
1182
+ "http://www.hubmed.org/display.cgi?uids=$id"
1183
+ end
1184
+
1185
+ def self.ddbj
1186
+ "http://xml.ddbj.nig.ac.jp/rest/Invoke?service=GetEntry&method=getDDBJEntry&accession=$id"
1187
+ end
1188
+
1189
+ def self.pdbj
1190
+ "http://service.pdbj.org/mine/Detail?PDBID=$id&PAGEID=Summary"
1191
+ end
1192
+
1193
+ def self.pdbsum
1194
+ "http://www.ebi.ac.uk/pdbsum/$id"
1195
+ end
1196
+
1197
+ def self.a_3did
1198
+ "http://3did.irbbarcelona.org/cgi-bin/query_domain_cgi.pl?domain=$id"
1199
+ end
1200
+
1201
+ def self.a_4dxpress
1202
+ "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$id"
1203
+ end
1204
+
1205
+ def self.aaindex
1206
+ "http://www.genome.jp/dbget-bin/www_bget?aaindex:$id"
1207
+ end
1208
+
1209
+ def self.adda
1210
+ "http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb/report_sequence?nid=$id"
1211
+ end
1212
+
1213
+ def self.adw
1214
+ "http://animaldiversity.ummz.umich.edu/site/accounts/information/$id.html"
1215
+ end
1216
+
1217
+ def self.agbase
1218
+ "http://www.agbase.msstate.edu/cgi-bin/getEntry.pl?db_pick=all&database=UniProtKB&gb_acc=$id"
1219
+ end
1220
+
1221
+ def self.agsd
1222
+ "http://www.genomesize.com/result_species.php?id=$id"
1223
+ end
1224
+
1225
+ def self.alfred
1226
+ "http://alfred.med.yale.edu/alfred/recordinfo.asp?condition=loci.locus_uid='$id"
1227
+ end
1228
+
1229
+ def self.alterorf
1230
+ "http://www.alterorf.cl/SearchResults/SearchResult.aspx?variable1=$id"
1231
+ end
1232
+
1233
+ def self.alzgene
1234
+ "http://www.alzgene.org/geneoverview.asp?geneid=$id"
1235
+ end
1236
+
1237
+ def self.anobase
1238
+ "http://www.anobase.org/genetool/v42/gene.php?id=$id"
1239
+ end
1240
+
1241
+ def self.antijen
1242
+ "http://www.darrenflower.info/scripts/aj_scripts/aj_mhccalc2.pl?epitope=$id&AL=%25&ST=%25&CAT=MHC&detailinfo=no&detailmin=&detailmax="
1243
+ end
1244
+
1245
+ def self.aogacioah
1246
+ "http://atlasgeneticsoncology.org/Genes/$id.html"
1247
+ end
1248
+
1249
+ def self.aphidbase
1250
+ "http://helico.genouest.org:8080/grs-1.8/grs?reportID=chado_[transcript/genome/protein]_report&objectID=$id"
1251
+ end
1252
+
1253
+ def self.aracxyls
1254
+ "http://www.eez.csic.es/arac-xyls/wfichas/$idrec.htm"
1255
+ end
1256
+
1257
+ def self.archdb
1258
+ "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$id"
1259
+ end
1260
+
1261
+ def self.ardb
1262
+ "http://ardb.cbcb.umd.edu/cgi/ssquery.cgi?db=T&ab=0&and1=A&ge=0&and2=A&sp=0&and3=A&gn=$id"
1263
+ end
1264
+
1265
+ def self.arkdb
1266
+ "http://www.thearkdb.org/arkdb/do/getMappableDetails?accession=$id"
1267
+ end
1268
+
1269
+ def self.artadedb
1270
+ "http://omicspace.riken.jp/gps/index.html?url=/gps/LineMode/ArtadeSearch_Flower&hCheck=v200307&hHead=[?genomic_region]&highlight=$id"
1271
+ end
1272
+
1273
+ def self.asalps
1274
+ "http://as-alps.nagahama-i-bio.ac.jp/search.php?sp=hs&switch=cluster&id_type=transcript&id=$id"
1275
+ end
1276
+
1277
+ def self.asrp
1278
+ "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$id"
1279
+ end
1280
+
1281
+ def self.astd
1282
+ "http://www.ebi.ac.uk/astd/geneview.html?acc=$id"
1283
+ end
1284
+
1285
+ def self.atpid
1286
+ "http://atpid.biosino.org/simple_detail.php?pro=$id"
1287
+ end
1288
+
1289
+ def self.attedii
1290
+ "http://atted.jp/data/cis/$id.html"
1291
+ end
1292
+
1293
+ def self.autdb
1294
+ "http://autism.mindspec.org/autdb/TableDetails.do?tableName=AUT_CANDIDATE_GENES&keyVal=$id"
1295
+ end
1296
+
1297
+ def self.bacmap
1298
+ "http://wishart.biology.ualberta.ca/BacMap/cgview_linked_maps/$id/index.html"
1299
+ end
1300
+
1301
+ def self.bacteriome
1302
+ "http://www.compsysbio.org/bacteriome/tsdetail.php?cutoff=50&genestr=$id&genenum=0"
1303
+ end
1304
+
1305
+ def self.bactibase
1306
+ "http://bactibase.pfba-lab-tun.org/$id"
1307
+ end
1308
+
1309
+ def self.balibase
1310
+ "http://bips.u-strasbg.fr/fr/Products/Databases/BAliBASE2/ref[$ref]/test/$id_ref[$ref].html"
1311
+ end
1312
+
1313
+ def self.bbid
1314
+ "http://bbid.grc.nia.nih.gov/geneimages/$id.jpeg"
1315
+ end
1316
+
1317
+ def self.benchmark
1318
+ "http://net.icgeb.org/benchmark/index.php?experiment=$id"
1319
+ end
1320
+
1321
+ def self.bged
1322
+ "http://genome.mc.pref.osaka.jp/cgi-bin/BGED/Gene_info.pl?num=$id"
1323
+ end
1324
+
1325
+ def self.bgee
1326
+ "http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id"
1327
+ end
1328
+
1329
+ def self.bgee_genes
1330
+ "http://bgee.unil.ch/bgee/bgee?page=gene&action=expression&gene_id=$id"
1331
+ end
1332
+
1333
+ def self.bgee_organ
1334
+ "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id=$id"
1335
+ end
1336
+
1337
+ def self.bid
1338
+ "http://tsailab.org/wikiBID/index.php/$id"
1339
+ end
1340
+
1341
+ def self.binding_moad
1342
+ "http://www.bindingmoad.org/moad/getMoadlet.do?id=$id"
1343
+ end
1344
+
1345
+ def self.biomagresbank
1346
+ "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$id"
1347
+ end
1348
+
1349
+ def self.bionemo
1350
+ "http://bionemo.bioinfo.cnio.es/Run.cgi?rm=mode4&result=$id"
1351
+ end
1352
+
1353
+ def self.biopax_l2
1354
+ "http://www.biopax.org/release/biopax-level2.owl#$id"
1355
+ end
1356
+
1357
+ def self.biopax_l3
1358
+ "http://www.biopax.org/release/biopax-level3.owl#$id"
1359
+ end
1360
+
1361
+ def self.biopixie
1362
+ "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$id"
1363
+ end
1364
+
1365
+ def self.biozon
1366
+ "http://biozon.org/Biozon/Profile/$id"
1367
+ end
1368
+
1369
+ def self.bmph
1370
+ "http://www.expasy.org/cgi-bin/show_image?$id"
1371
+ end
1372
+
1373
+ def self.bodymap
1374
+ "http://bodymap.ims.u-tokyo.ac.jp/[?human/mouse]/gs_card.php?gs=$id"
1375
+ end
1376
+
1377
+ def self.bps
1378
+ "http://bps.rutgers.edu/atlas/bp_record/$id"
1379
+ end
1380
+
1381
+ def self.bsd
1382
+ "http://bsd.cme.msu.edu/jsp/InfoController.jsp?object=Strain&id=S_$id"
1383
+ end
1384
+
1385
+ def self.bsorf
1386
+ "http://bacillus.genome.jp/cgi-bin/BSORF_data_view.pl?ACCESSION=$id"
1387
+ end
1388
+
1389
+ def self.buchnerabase
1390
+ "http://www.york.ac.uk/res/thomas/Buchnerabase/resources/gene_page_aps.cfm?BBnum=$id"
1391
+ end
1392
+
1393
+ def self.cage_ctss
1394
+ "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryCtss.php?ctss_id=$id"
1395
+ end
1396
+
1397
+ def self.cage_library
1398
+ "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryLibrary.php?libid=$id"
1399
+ end
1400
+
1401
+ def self.cage_tc
1402
+ "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTss.php?tss_id=$id"
1403
+ end
1404
+
1405
+ def self.cage_tu
1406
+ "http://fantom31p.gsc.riken.jp/cage/mm5/SummaryTu.php?tu_id=$id"
1407
+ end
1408
+
1409
+ def self.cancergenes
1410
+ "http://cbio.mskcc.org/Public/products/human_mapped/Mapback_html/$id.html"
1411
+ end
1412
+
1413
+ def self.cangem
1414
+ "http://www.cangem.org/index.php?gene=$id"
1415
+ end
1416
+
1417
+ def self.carpedb_gene
1418
+ "http://www.carpedb.ua.edu/summary.cfm?id=$id"
1419
+ end
1420
+
1421
+ def self.carpedb_reference
1422
+ "http://www.carpedb.ua.edu/public.cfm?id=$id"
1423
+ end
1424
+
1425
+ def self.catdb
1426
+ "http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_project.pl?project_id=$id"
1427
+ end
1428
+
1429
+ def self.cattleqtldb
1430
+ "http://www.animalgenome.org/cgi-bin/QTLdb/BT/qdetails?QTL_ID=$id"
1431
+ end
1432
+
1433
+ def self.ccm
1434
+ "http://cancer.cellmap.org/cellmap/record.do?id=$id"
1435
+ end
1436
+
1437
+ def self.cged
1438
+ "http://lifesciencedb.jp/cgi-bin/cged/detail.cgi?ci=3&cg=$id"
1439
+ end
1440
+
1441
+ def self.cgnc
1442
+ "http://www.agnc.msstate.edu/GeneReport.aspx?a=$id"
1443
+ end
1444
+
1445
+ def self.chembl
1446
+ "https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/$id"
1447
+ end
1448
+
1449
+ def self.chickenqtldb
1450
+ "http://www.animalgenome.org/cgi-bin/QTLdb/GG/qdetails?QTL_ID=$id"
1451
+ end
1452
+
1453
+ def self.chickvd
1454
+ "http://chicken.genomics.org.cn/chicken/jsp/gene_report.jsp?gene_id=$id"
1455
+ end
1456
+
1457
+ def self.chromdb
1458
+ "http://www.chromdb.org/gene_record.html?g=$id"
1459
+ end
1460
+
1461
+ def self.cid
1462
+ "http://oxytricha.princeton.edu/cgi-bin/get_MDS_IES_Info.cgi?num=$id"
1463
+ end
1464
+
1465
+ def self.cisred
1466
+ "http://www.cisred.org/[?species]/gene_view?ensembl_id=$id"
1467
+ end
1468
+
1469
+ def self.cleanest
1470
+ "http://verdi.kobic.re.kr/cleanEST/library_view.jsp?libid=$id"
1471
+ end
1472
+
1473
+ def self.cleanex
1474
+ "http://www.cleanex.isb-sib.ch/cgi-bin/get_doc?db=cleanex&format=nice&entry=$id"
1475
+ end
1476
+
1477
+ def self.clibe
1478
+ "http://bidd.nus.edu.sg/group/CLiBE/Detail.asp?ID=$id"
1479
+ end
1480
+
1481
+ def self.cmd
1482
+ "https://eds.gene.le.ac.uk/home.php?select_db=$id"
1483
+ end
1484
+
1485
+ def self.cmgsdb_chain
1486
+ "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewChain.php?chainid=$id"
1487
+ end
1488
+
1489
+ def self.cmgsdb_exp
1490
+ "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/rnaiexpt.php?expt=$id"
1491
+ end
1492
+
1493
+ def self.cmgsdb_gene
1494
+ "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewGene.php?wbgene=$id"
1495
+ end
1496
+
1497
+ def self.cmgsdb_protein
1498
+ "https://bioinformatics.cs.vt.edu/cmgs/CMGSDB/viewProtein.php?wpid=$id"
1499
+ end
1500
+
1501
+ def self.cnidbase
1502
+ "http://cnidbase.com/index.cgi?cn_accession=$id"
1503
+ end
1504
+
1505
+ def self.cno
1506
+ "http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#$id"
1507
+ end
1508
+
1509
+ def self.cogat
1510
+ "http://www.cognitiveatlas.org/ontology/cogat.owl#$id"
1511
+ end
1512
+
1513
+ def self.cogeme
1514
+ "http://cogeme.ex.ac.uk/cgi-bin/uni.pl?uni=$id"
1515
+ end
1516
+
1517
+ def self.come
1518
+ "http://www.flymine.org/come/entry?gn=$id"
1519
+ end
1520
+
1521
+ def self.comparative_genometrics
1522
+ "http://www2.unil.ch/comparativegenometrics/$id.htm"
1523
+ end
1524
+
1525
+ def self.compluyeast2dpage
1526
+ "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$id"
1527
+ end
1528
+
1529
+ def self.consurfdb
1530
+ "http://consurfdb.tau.ac.il/consurf_db/$id/[?chain_id]/"
1531
+ end
1532
+
1533
+ def self.cope
1534
+ "http://www.copewithcytokines.de/cope.cgi?key=$id"
1535
+ end
1536
+
1537
+ def self.corg
1538
+ "http://corg.eb.tuebingen.mpg.de/cgi-bin/get_gene_info_v38.pl?id=$id&species=[?species_name]&version=v38"
1539
+ end
1540
+
1541
+ def self.corum
1542
+ "http://mips.helmholtz-muenchen.de/genre/proj/corum/complexdetails.html?id=$id"
1543
+ end
1544
+
1545
+ def self.cosmic
1546
+ "http://www.sanger.ac.uk/perl/genetics/CGP/cosmic?action=byhist&s=4&hn=carcinoma&sn=ovary&ln=$id"
1547
+ end
1548
+
1549
+ def self.coxpresdb
1550
+ "http://coxpresdb.jp/tis_map/$id/"
1551
+ end
1552
+
1553
+ def self.cpndb
1554
+ "http://cpndb.cbr.nrc.ca/getRecord.php?id=$id"
1555
+ end
1556
+
1557
+ def self.cpo
1558
+ "http://phenomebrowser.net/cellphenotype.owl#$id"
1559
+ end
1560
+
1561
+ def self.cpr
1562
+ "http://purl.org/cpr/$id"
1563
+ end
1564
+
1565
+ def self.csrd
1566
+ "http://sundarlab.ucdavis.edu/cgi-bin/smrna_browse/?name=$id"
1567
+ end
1568
+
1569
+ def self.cst
1570
+ "http://www.cellsignal.com/products/$id.html"
1571
+ end
1572
+
1573
+ def self.ctad
1574
+ "http://www.cta.lncc.br/modelo.php?idgene=$id&idmeta=11"
1575
+ end
1576
+
1577
+ def self.ctcae
1578
+ "http://ncicb.nci.nih.gov/xml/owl/EVS/ctcae.owl#$id"
1579
+ end
1580
+
1581
+ def self.ctga
1582
+ "http://www.cags.org.ae/FMPro?-db=ctga.fp5&-format=/ctga/ctga_detail.html&-lay=main&Record_Category=Gene%20locus&-max=30&-recid=$id&-find="
1583
+ end
1584
+
1585
+ def self.cutdb
1586
+ "http://cutdb.burnham.org/relation/show/$id"
1587
+ end
1588
+
1589
+ def self.cutg
1590
+ "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$id"
1591
+ end
1592
+
1593
+ def self.cyanobase
1594
+ "http://genome.kazusa.or.jp/cyanobase/Synechocystis/genes/$id"
1595
+ end
1596
+
1597
+ def self.cybase
1598
+ "http://research1t.imb.uq.edu.au/cybase/index.php?page=card&table=protein&id=$id"
1599
+ end
1600
+
1601
+ def self.cyclebase
1602
+ "http://www.cyclebase.org/displaygene.action?geneName=$id&taxId=[$taxid]"
1603
+ end
1604
+
1605
+ def self.dali
1606
+ "http://ekhidna.biocenter.helsinki.fi/dali_server/results/$id/index.html"
1607
+ end
1608
+
1609
+ def self.dart
1610
+ "http://xin.cz3.nus.edu.sg/group/DRT/Detail.asp?ID=$id"
1611
+ end
1612
+
1613
+ def self.datf
1614
+ "http://datf.cbi.pku.edu.cn/entry-display.php?id=$id"
1615
+ end
1616
+
1617
+ def self.dbd
1618
+ "http://dbd.mrc-lmb.cam.ac.uk/DBD/index.cgi?Search/Domain+domain:$id"
1619
+ end
1620
+
1621
+ def self.dbpabp
1622
+ "http://ppa.bcf.ku.edu/DB_PABP/protein_details.jsp?prot_id=$id"
1623
+ end
1624
+
1625
+ def self.dbpedia
1626
+ "http://dbpedia.org/page/$id"
1627
+ end
1628
+
1629
+ def self.dbptm
1630
+ "http://dbptm.mbc.nctu.edu.tw/search_result.php?search_type=seq&swiss_id=$id"
1631
+ end
1632
+
1633
+ def self.dbres
1634
+ "http://bioinfo.au.tsinghua.edu.cn/dbRES/show_record.php?resid=$id"
1635
+ end
1636
+
1637
+ def self.dbtgr
1638
+ "http://dbtgr.hgc.jp/v2/id/$id"
1639
+ end
1640
+
1641
+ def self.dc
1642
+ "http://purl.org/dc/terms/$id"
1643
+ end
1644
+
1645
+ def self.dccp
1646
+ "http://sdbi.sdut.edu.cn/DCCP/en/Detail1D.php?id=$id"
1647
+ end
1648
+
1649
+ def self.ddoc
1650
+ "http://apps.sanbi.ac.za/ddoc/details_general.php?geneID=$id"
1651
+ end
1652
+
1653
+ def self.defensins_knowledgebase
1654
+ "http://defensins.bii.a-star.edu.sg/pops/pop_proteinDetails.php?id=$id"
1655
+ end
1656
+
1657
+ def self.dhaplodb
1658
+ "http://orca.gen.kyushu-u.ac.jp/cgi-bin/gbrowse/humanBuild35/?name=$id"
1659
+ end
1660
+
1661
+ def self.dictybase_ref
1662
+ "http://dictybase.org/db/cgi-bin/dictyBase/reference/reference.pl?refNo=$id"
1663
+ end
1664
+
1665
+ def self.dima
1666
+ "http://mips.helmholtz-muenchen.de/genre/proj/dima2/query/query.jsp?domain=$id"
1667
+ end
1668
+
1669
+ def self.domine
1670
+ "http://domine.utdallas.edu/cgi-bin/Domine?page=pfam&pfamid=$id"
1671
+ end
1672
+
1673
+ def self.domins
1674
+ "http://www.domins.org/cgi/pdbcode.pl?id=$id"
1675
+ end
1676
+
1677
+ def self.door
1678
+ "http://csbl1.bmb.uga.edu/OperonDB/genedetail.php?id=$id"
1679
+ end
1680
+
1681
+ def self.dosaccobs2dpage
1682
+ "http://www.dosac.unipa.it/cgi-bin/2d/2d.cgi?ac=$id"
1683
+ end
1684
+
1685
+ def self.dpd
1686
+ "http://dpdb.uab.es/cgi-bin/DPDB_s2.pl?Accession=$id"
1687
+ end
1688
+
1689
+ def self.dpinteract
1690
+ "http://arep.med.harvard.edu/ecoli_matrices/sco/$id.sco"
1691
+ end
1692
+
1693
+ def self.dpr
1694
+ "http://dnasu.asu.edu/DNASU/GetCloneDetail.do?cloneid=$id"
1695
+ end
1696
+
1697
+ def self.drospege
1698
+ "http://arthropods.eugenes.org/genepage/[?species_name]/$id]"
1699
+ end
1700
+
1701
+ def self.drtf
1702
+ "http://drtf.cbi.pku.edu.cn/gene_info.php?gn=$id"
1703
+ end
1704
+
1705
+ def self.ecocyc_compound
1706
+ "http://biocyc.org/ECOLI/NEW-IMAGE?type=COMPOUND&object=$id"
1707
+ end
1708
+
1709
+ def self.ecocyc_enzyme
1710
+ "http://biocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=$id"
1711
+ end
1712
+
1713
+ def self.ecocyc_gene
1714
+ "http://biocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=$id"
1715
+ end
1716
+
1717
+ def self.ecocyc_pathway
1718
+ "http://biocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=$id"
1719
+ end
1720
+
1721
+ def self.ecocyc_reaction
1722
+ "http://biocyc.org/ECOLI/NEW-IMAGE?type=REACTION&object=$id"
1723
+ end
1724
+
1725
+ def self.ecocyc_ref
1726
+ "http://biocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=$id"
1727
+ end
1728
+
1729
+ def self.ecoliwiki
1730
+ "http://ecoliwiki.net/colipedia/index.php/$id"
1731
+ end
1732
+
1733
+ def self.edas_human
1734
+ "http://edas2.bioinf.fbb.msu.ru/human/summary.cgi?gene_id=$id"
1735
+ end
1736
+
1737
+ def self.edas_mouse
1738
+ "http://edas2.bioinf.fbb.msu.ru/mouse/data.cgi?chromosome=$id"
1739
+ end
1740
+
1741
+ def self.efsite
1742
+ "http://ef-site.protein.osaka-u.ac.jp/eF-site/servlet/Summary?entry_id=$id"
1743
+ end
1744
+
1745
+ def self.ego
1746
+ "http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/ego/ego_report.pl?ego=$id"
1747
+ end
1748
+
1749
+ def self.emglib
1750
+ "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=GenBank"
1751
+ end
1752
+
1753
+ def self.emim
1754
+ "http://discover.nci.nih.gov/mim/view.jsp?selection=map&MIM=$id"
1755
+ end
1756
+
1757
+ def self.endonet
1758
+ "http://endonet.bioinf.med.uni-goettingen.de/hormonedetail?id=$id"
1759
+ end
1760
+
1761
+ def self.enzyme
1762
+ "http://ca.expasy.org/enzyme/$id"
1763
+ end
1764
+
1765
+ def self.epcondb
1766
+ "http://www.cbil.upenn.edu/epcondb42/showRecord.do?name=TranscriptRecordClasses.TranscriptRecordClass&project_id=GenomicsBC&primary_key=$id"
1767
+ end
1768
+
1769
+ def self.epd
1770
+ "http://www.epd.isb-sib.ch/cgi-bin/get_doc?db=epd&format=nice&entry=$id"
1771
+ end
1772
+
1773
+ def self.epgd
1774
+ "http://epgd.biosino.org/EPGD/gene/geneinfor.jsp?geneID=$id"
1775
+ end
1776
+
1777
+ def self.erd
1778
+ "http://bioinformatics.psb.ugent.be/webtools/rRNA/[lsu/[ssu]/data/$id"
1779
+ end
1780
+
1781
+ def self.ergo
1782
+ "http://www.ergo-light.com/ERGO/CGI/prot.cgi?prot=$id"
1783
+ end
1784
+
1785
+ def self.ergr
1786
+ "http://bioinfo.vipbg.vcu.edu/ERGR/geneinfo.php?id=$id"
1787
+ end
1788
+
1789
+ def self.eropmoscow
1790
+ "http://erop.inbi.ras.ru/result2.php?PepName=$id"
1791
+ end
1792
+
1793
+ def self.esldb
1794
+ "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$id"
1795
+ end
1796
+
1797
+ def self.esther
1798
+ "http://bioweb.ensam.inra.fr/ESTHER/family?name=$id&class=Family"
1799
+ end
1800
+
1801
+ def self.eugenes
1802
+ "http://eugenes.org:7072/.bin/fbidq.html?$id"
1803
+ end
1804
+
1805
+ def self.evoc
1806
+ "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$id"
1807
+ end
1808
+
1809
+ def self.evola
1810
+ "http://www.h-invitational.jp/evola_main/annotation.cgi?hit=$id"
1811
+ end
1812
+
1813
+ def self.explorenz
1814
+ "http://www.enzyme-database.org/query.php?ec=$id"
1815
+ end
1816
+
1817
+ def self.eyesite
1818
+ "http://eyesite.cryst.bbk.ac.uk/cgi-bin/get_family_page.cgi?FAMILY=$id"
1819
+ end
1820
+
1821
+ def self.ezcatdb
1822
+ "http://mbs.cbrc.jp/EzCatDB/search/get.do?dbcode=$id"
1823
+ end
1824
+
1825
+ def self.fcp
1826
+ "http://cgl.imim.es/fcp/fcp.php?struct=1&compactId=EC.$id"
1827
+ end
1828
+
1829
+ def self.fgdb
1830
+ "http://mips.helmholtz-muenchen.de/genre/proj/FGDB/singleGeneReport.html?entry=$id"
1831
+ end
1832
+
1833
+ def self.firedb
1834
+ "http://firedb.bioinfo.cnio.es/Php/FireDB.php?pdbcode=$id"
1835
+ end
1836
+
1837
+ def self.flight
1838
+ "http://flight.licr.org/browse/view_rnai_hits.jsp?project_id=[$project_id]&screen_id=$id"
1839
+ end
1840
+
1841
+ def self.flymine
1842
+ "http://www.flymine.org/release-25.0/objectDetails.do?id=$id"
1843
+ end
1844
+
1845
+ def self.flytf
1846
+ "http://www.flytf.org/flytfmine/objectDetails.do?id=$id"
1847
+ end
1848
+
1849
+ def self.frnadb
1850
+ "http://www.ncrna.org/frnadb/detail.html?i_name=$id"
1851
+ end
1852
+
1853
+ def self.fugoid
1854
+ "http://fugoid.webhost.utexas.edu/introndata/full_display.cfm?intronID=$id"
1855
+ end
1856
+
1857
+ def self.funpep
1858
+ "http://swift.cmbi.kun.nl/swift/FUNPEP/gergo/$id/index.html"
1859
+ end
1860
+
1861
+ def self.gallus_gbrowse
1862
+ "http://birdbase.net/cgi-bin/gbrowse/gallus08/?name=$id"
1863
+ end
1864
+
1865
+ def self.gdfr_est
1866
+ "http://www.rosaceae.org/bio/content/?title=&url=http://www.rosaceae.org/cgi-bin/gdr/gdr_ESTGB.cgi?clone_name=$id"
1867
+ end
1868
+
1869
+ def self.gdfr_marker
1870
+ "http://www.rosaceae.org/bio/content/?title=&url=http://www.rosaceae.org/cgi-bin/gdr/gdr_marker.cgi?MName_Result=$id"
1871
+ end
1872
+
1873
+ def self.geisha
1874
+ "http://geisha.arizona.edu/geisha/search.jsp?gene=$id"
1875
+ end
1876
+
1877
+ def self.genage
1878
+ "http://genomics.senescence.info/genes/details.php?id=$id"
1879
+ end
1880
+
1881
+ def self.gendis
1882
+ "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$id"
1883
+ end
1884
+
1885
+ def self.gendr
1886
+ "http://genomics.senescence.info/diet/details.php?id=$id"
1887
+ end
1888
+
1889
+ def self.geneloc
1890
+ "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$id"
1891
+ end
1892
+
1893
+ def self.genenet
1894
+ "http://wwwmgs.bionet.nsc.ru/mgs/gnw/genenet/viewer/$id.html"
1895
+ end
1896
+
1897
+ def self.genenote
1898
+ "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$id&data_type=norm2&results=yes"
1899
+ end
1900
+
1901
+ def self.genetrap
1902
+ "http://pokey.ibme.utoronto.ca/clone_report.php?id=$id"
1903
+ end
1904
+
1905
+ def self.genetrees
1906
+ "http://genetrees.vbi.vt.edu/GetAlignment?al=$id"
1907
+ end
1908
+
1909
+ def self.genolevures
1910
+ "http://www.genolevures.org/elt/$id"
1911
+ end
1912
+
1913
+ def self.genomereviews
1914
+ "http://www.ebi.ac.uk/integr8/OrganismSelection.do?action=makeCurrent&proteomeId=$id"
1915
+ end
1916
+
1917
+ def self.genomernai
1918
+ "http://rnai.dkfz.de/GenomeRNAi/genedetails/$id"
1919
+ end
1920
+
1921
+ def self.gensat
1922
+ "http://www.ncbi.nlm.nih.gov/sites/entrez?db=gensat&cmd=retrieve&list_uids=$id"
1923
+ end
1924
+
1925
+ def self.germonline_gene
1926
+ "http://www.germonline.org/Homo_sapiens/geneview?db=core;gene=$id"
1927
+ end
1928
+
1929
+ def self.germonline_marker
1930
+ "http://www.germonline.org/Homo_sapiens/markerview?marker=$id"
1931
+ end
1932
+
1933
+ def self.ghr
1934
+ "http://ghr.nlm.nih.gov/gene/$id"
1935
+ end
1936
+
1937
+ def self.gi
1938
+ "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$id"
1939
+ end
1940
+
1941
+ def self.gib
1942
+ "http://gib.genes.nig.ac.jp/single/index.php?spid=$id"
1943
+ end
1944
+
1945
+ def self.gissd
1946
+ "http://www.rna.whu.edu.cn/perl/gissd/get_seq_exon.cgi?intron_id=$id"
1947
+ end
1948
+
1949
+ def self.glycomapsdb
1950
+ "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$id"
1951
+ end
1952
+
1953
+ def self.glyconavi
1954
+ "http://ws.glyconavi.org/DbDetail/moldetail.aspx?moleculeID=$id"
1955
+ end
1956
+
1957
+ def self.gnd
1958
+ "http://nava.liacs.nl/cgi-bin/nava.py?id=$id"
1959
+ end
1960
+
1961
+ def self.gold
1962
+ "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$id"
1963
+ end
1964
+
1965
+ def self.gopad
1966
+ "http://bcl.med.harvard.edu/proteomics/proj/gopart/gopart_all_tbl_view_detail_list.php?masterkey=$id"
1967
+ end
1968
+
1969
+ def self.gp
1970
+ "http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=$id"
1971
+ end
1972
+
1973
+ def self.gpxmacrophage
1974
+ "http://gpxmea.gti.ed.ac.uk/GPX/cgi-bin/Scripts/showexperiment.cgi?HID=$id"
1975
+ end
1976
+
1977
+ def self.gramene_po
1978
+ "http://www.gramene.org/db/ontology/search?id=$id"
1979
+ end
1980
+
1981
+ def self.gramene_ref
1982
+ "http://www.gramene.org/db/literature/pub_search?ref_id=$id"
1983
+ end
1984
+
1985
+ def self.greenphyldb
1986
+ "http://greenphyl.cirad.fr/v2/cgi-bin/family.cgi?id=$id"
1987
+ end
1988
+
1989
+ def self.grin
1990
+ "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$id"
1991
+ end
1992
+
1993
+ def self.grsdb
1994
+ "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$id"
1995
+ end
1996
+
1997
+ def self.gtop
1998
+ "http://spock.genes.nig.ac.jp/~genome/cgi-bin/mas.pl.cgi?org=[?species]&gene=$id"
1999
+ end
2000
+
2001
+ def self.gtrdb
2002
+ "http://gtrnadb.ucsc.edu/$id"
2003
+ end
2004
+
2005
+ def self.gxd
2006
+ "http://gbrowse.informatics.jax.org/cgi-bin/gbrowse/mouse_current/?name=$id"
2007
+ end
2008
+
2009
+ def self.hagr
2010
+ "http://genomics.senescence.info/genes/entry.php?hgnc=$id"
2011
+ end
2012
+
2013
+ def self.hapmap
2014
+ "http://snp.cshl.org/cgi-perl/gbrowse/hapmap27_B36/?name=$id"
2015
+ end
2016
+
2017
+ def self.hbvar
2018
+ "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$id"
2019
+ end
2020
+
2021
+ def self.hc
2022
+ "http://www.mesquiteproject.org/ontology/Habronattus/$id.html"
2023
+ end
2024
+
2025
+ def self.hcnet
2026
+ "http://sbrg2.gist.ac.kr/hcnet/ver1.1/php/showDetailGeneInfo.php?unigeneID=$id"
2027
+ end
2028
+
2029
+ def self.hcpin
2030
+ "http://nesg.org:9090/HCPIN/NShowProteinInfor.jsp?protein_id=$id"
2031
+ end
2032
+
2033
+ def self.hcv
2034
+ "http://hcv.lanl.gov/components/sequence/HCV/asearch/query_one.comp?se_id=$id"
2035
+ end
2036
+
2037
+ def self.hdbas
2038
+ "http://jbirc.jbic.or.jp/h-dbas/locusOverview.do?db=all&hix=$id"
2039
+ end
2040
+
2041
+ def self.hdbase
2042
+ "http://hdbase.org/cgi-bin/jdrf_gene.cgi?ll_id=$id"
2043
+ end
2044
+
2045
+ def self.hdr
2046
+ "http://research.nhgri.nih.gov/homeodomain/?mode=view&view=proteins&id=$id"
2047
+ end
2048
+
2049
+ def self.hedgehog
2050
+ "http://hedgehog.sfsu.edu/genes/$id.html"
2051
+ end
2052
+
2053
+ def self.hegdb
2054
+ "http://genomes.urv.cat/HEG-DB/buscador/mostrar_statical.php?name=$id&aa=true&codon=true&rscu=true"
2055
+ end
2056
+
2057
+ def self.hembase
2058
+ "http://fmp-8.cit.nih.gov/hembase/detail.php?chrb=$id"
2059
+ end
2060
+
2061
+ def self.hgnc
2062
+ "http://www.genenames.org/data/hgnc_data.php?hgnc_id=$id"
2063
+ end
2064
+
2065
+ def self.hgpd
2066
+ "http://riodb.ibase.aist.go.jp/hgpd/cgi-bin/pg_locus_list.cgi?txt_srch_cdna_name=$id"
2067
+ end
2068
+
2069
+ def self.hgsdd
2070
+ "http://projects.tcag.ca/cgi-bin/seg_dup/dupbrowse/human_b35/?name=$id"
2071
+ end
2072
+
2073
+ def self.hgvbase
2074
+ "http://www.hgvbaseg2p.org/study/$id"
2075
+ end
2076
+
2077
+ def self.hits
2078
+ "http://hits.isb-sib.ch/cgi-bin/view_mot_entry?name=$id"
2079
+ end
2080
+
2081
+ def self.hmp
2082
+ "http://www.hmpdacc-resources.org/cgi-bin/hmp_catalog/main.cgi?section=HmpSummary&page=displayHmpProject&hmp_id=$id"
2083
+ end
2084
+
2085
+ def self.hmpd
2086
+ "http://bioinfo.nist.gov/hmpd/servlet/Search3?vswiss_id=$id"
2087
+ end
2088
+
2089
+ def self.hoinvgen
2090
+ "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=Hoinvprot&ident=1989108068"
2091
+ end
2092
+
2093
+ def self.homd
2094
+ "http://www.homd.org/modules.php?op=modload&name=HOMD&file=index&oraltaxonid=$id&view=dynamic"
2095
+ end
2096
+
2097
+ def self.homeodomain_resource
2098
+ "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$id"
2099
+ end
2100
+
2101
+ def self.homstrad
2102
+ "http://tardis.nibio.go.jp/cgi-bin/homstrad/getdata.cgi?id=$id"
2103
+ end
2104
+
2105
+ def self.hoppsigen
2106
+ "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-search-id?query=$id&db=Hoppsigen&ident=1989108068"
2107
+ end
2108
+
2109
+ def self.horde
2110
+ "http://genome.weizmann.ac.il/cgi-bin/horde/showGene.pl?symbol=$id"
2111
+ end
2112
+
2113
+ def self.hotsprint
2114
+ "http://prism.ccbb.ku.edu.tr/hotsprint/result.php?queryId=$id"
2115
+ end
2116
+
2117
+ def self.howdy
2118
+ "http://howdy.jst.go.jp/HOWDYCL/HOWDY.pl?Cls=GenBank&Key=UKEY&Val=$id"
2119
+ end
2120
+
2121
+ def self.hpmr
2122
+ "http://www.receptome.org/HPMR/Families/Frameset_family.asp?FamId=$id"
2123
+ end
2124
+
2125
+ def self.htpselex
2126
+ "http://www.isrec.isb-sib.ch/cgi-bin/htpselex/doc.cgi?id=$id"
2127
+ end
2128
+
2129
+ def self.humancyc_compounds
2130
+ "http://biocyc.org/[?species]/NEW-IMAGE?type=COMPOUND&object=$id"
2131
+ end
2132
+
2133
+ def self.humancyc_genes
2134
+ "http://biocyc.org/[?species]/search-query?type=GENE&gname=$id"
2135
+ end
2136
+
2137
+ def self.humancyc_pathways
2138
+ "http://biocyc.org/[?species]/NEW-IMAGE?type=PATHWAY&object=$id"
2139
+ end
2140
+
2141
+ def self.humancyc_reactions
2142
+ "http://biocyc.org/[?species]/new-image?type=REACTION&object=$id"
2143
+ end
2144
+
2145
+ def self.hupi
2146
+ "http://hupi.ircm.qc.ca/hupi/gene/$id"
2147
+ end
2148
+
2149
+ def self.icbs
2150
+ "http://contact14.ics.uci.edu/htmlfiles/$id.mmol.html"
2151
+ end
2152
+
2153
+ def self.icds
2154
+ "http://www-bio3d-igbmc.u-strasbg.fr/ICDS/cgi-bin/gscope_html_server.tcsh?ICDS&PagesWeb&GvioManu&UnICDS&$id"
2155
+ end
2156
+
2157
+ def self.idbd
2158
+ "http://biomarker.korea.ac.kr/disease/disease_view_en.jsp?group=1&id=$id"
2159
+ end
2160
+
2161
+ def self.iev
2162
+ "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$id"
2163
+ end
2164
+
2165
+ def self.igtcd
2166
+ "http://www.genetrap.org/cgi-bin/annotation.py?gene_key=$id"
2167
+ end
2168
+
2169
+ def self.ihop
2170
+ "http://www.ihop-net.org/UniPub/iHOP/gs/$id.html"
2171
+ end
2172
+
2173
+ def self.il2rgbase
2174
+ "http://research.nhgri.nih.gov/apps/scid/scid_reference.html#$id"
2175
+ end
2176
+
2177
+ def self.imgt_3dstructuredb
2178
+ "http://imgt.cines.fr/3Dstructure-DB/cgi/details.cgi?pdbcode=$id"
2179
+ end
2180
+
2181
+ def self.imgt_primerdb
2182
+ "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$id&origin=view&source=PrList"
2183
+ end
2184
+
2185
+ def self.imotdb
2186
+ "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$id"
2187
+ end
2188
+
2189
+ def self.imr
2190
+ "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$id"
2191
+ end
2192
+
2193
+ def self.innatedb
2194
+ "http://www.innatedb.ca/getGeneCard.do?id=$id"
2195
+ end
2196
+
2197
+ def self.insrd
2198
+ "http://anobase.vectorbase.org/ir/assay.php?id=$id"
2199
+ end
2200
+
2201
+ def self.integr8
2202
+ "http://www.ebi.ac.uk/integr8/OrganismSelection.do?action=makeCurrent&proteomeId=$id"
2203
+ end
2204
+
2205
+ def self.interactive_fly
2206
+ "http://www.sdbonline.org/fly/$id.htm"
2207
+ end
2208
+
2209
+ def self.interfil
2210
+ "http://www.interfil.org/details.php?id=$id"
2211
+ end
2212
+
2213
+ def self.interpare
2214
+ "http://interpare.kobic.re.kr/cgi-bin/search_interface_from_interpare_new.cgi?pdb=$id"
2215
+ end
2216
+
2217
+ def self.ipath
2218
+ "http://escience.invitrogen.com/ipath/iPath.jsp?cn=unknown&mapid=$id"
2219
+ end
2220
+
2221
+ def self.ipdestdab
2222
+ "http://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?$id"
2223
+ end
2224
+
2225
+ def self.ipdmhc
2226
+ "http://www.ebi.ac.uk/cgi-bin/ipd/mhc/get_allele.cgi?$id"
2227
+ end
2228
+
2229
+ def self.ipfam
2230
+ "http://pfam.sanger.ac.uk/[family/clan]?acc=$id"
2231
+ end
2232
+
2233
+ def self.ipfam_proteome
2234
+ "http://pfam.sanger.ac.uk/proteome?taxId=$id"
2235
+ end
2236
+
2237
+ def self.iproclass
2238
+ "http://pir.georgetown.edu/cgi-bin/ipcEntry?id=$id"
2239
+ end
2240
+
2241
+ def self.iresite
2242
+ "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$id"
2243
+ end
2244
+
2245
+ def self.islander
2246
+ "http://kementari.bioinformatics.vt.edu/cgi-bin/island.cgi?island=$id"
2247
+ end
2248
+
2249
+ def self.its2
2250
+ "http://its2.bioapps.biozentrum.uni-wuerzburg.de/cgi-bin/its2.pl?Taxon_id=$id&method=All"
2251
+ end
2252
+
2253
+ def self.ivdb
2254
+ "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$id"
2255
+ end
2256
+
2257
+ def self.jail
2258
+ "http://bioinf-apache.charite.de/jail/index.php?site=show_interfaces&pdb_id=$id"
2259
+ end
2260
+
2261
+ def self.jcvi_genprop
2262
+ "http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenomePropDefinition.cgi?prop_acc=$id"
2263
+ end
2264
+
2265
+ def self.kdbi
2266
+ "http://bidd.nus.edu.sg/group/KDBI/Detail-new.asp?ID=$id"
2267
+ end
2268
+
2269
+ def self.kdd
2270
+ "http://golgi.ana.ed.ac.uk/$id.html"
2271
+ end
2272
+
2273
+ def self.kegg_brite
2274
+ "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$id"
2275
+ end
2276
+
2277
+ def self.kegg_disease
2278
+ "http://www.genome.jp/dbget-bin/www_bget?ds:$id"
2279
+ end
2280
+
2281
+ def self.kineticdb
2282
+ "http://kineticdb.protres.ru/db/ind.pl?ind=$id"
2283
+ end
2284
+
2285
+ def self.klotho
2286
+ "http://www.biocheminfo.org/klotho/html/$id.html"
2287
+ end
2288
+
2289
+ def self.l1base
2290
+ "http://line1.bioapps.biozentrum.uni-wuerzburg.de/details.php?DBN=[?family_name]&UID=$id"
2291
+ end
2292
+
2293
+ def self.leproma
2294
+ "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$id&submit=Search"
2295
+ end
2296
+
2297
+ def self.ligasite
2298
+ "http://www.bigre.ulb.ac.be/Users/benoit/LigASite/index.php?apo=$id"
2299
+ end
2300
+
2301
+ def self.lncrna
2302
+ "http://lncrnadb.com/Detail.aspx?TKeyID=$id"
2303
+ end
2304
+
2305
+ def self.locate
2306
+ "http://locate.imb.uq.edu.au/cgi-bin/report.cgi?entry=$id"
2307
+ end
2308
+
2309
+ def self.loqate
2310
+ "http://www.weizmann.ac.il/molgen/loqate/gene/view/$id"
2311
+ end
2312
+
2313
+ def self.lpfc
2314
+ "http://helix-web.stanford.edu/cgi-bin/textsearch.cgi?key=$id"
2315
+ end
2316
+
2317
+ def self.lsmd
2318
+ "http://research.nhgri.nih.gov/lowe/db_retrieval.cgi?site_name=lowe&exon_intron_num=$id"
2319
+ end
2320
+
2321
+ def self.magest
2322
+ "http://magest.hgc.jp/db/show_contig_by_entry_id/$id"
2323
+ end
2324
+
2325
+ def self.malaria
2326
+ "http://sites.huji.ac.il/malaria/maps/$id.html"
2327
+ end
2328
+
2329
+ def self.malisam
2330
+ "http://prodata.swmed.edu/malisam/[$id1][$id2]/[$id1][$id2].html"
2331
+ end
2332
+
2333
+ def self.mampol
2334
+ "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$id"
2335
+ end
2336
+
2337
+ def self.mapviewer
2338
+ "http://www.ncbi.nlm.nih.gov/projects/mapview/map_search.cgi?taxid=$id"
2339
+ end
2340
+
2341
+ def self.mdpd
2342
+ "http://datam.i2r.a-star.edu.sg/mdpd/detail.php?symbol=$id"
2343
+ end
2344
+
2345
+ def self.megamotifbase
2346
+ "http://caps.ncbs.res.in/cgi-bin/mini/databases/MegaMotifbase/megamotif1.cgi?code=$id&opt=h"
2347
+ end
2348
+
2349
+ def self.mepd
2350
+ "http://ani.embl.de:8080/mepd/MdbShowClone01?cloneID=$id"
2351
+ end
2352
+
2353
+ def self.merna
2354
+ "http://merna.lbl.gov/search.php?type=simple&metal_ion=$id"
2355
+ end
2356
+
2357
+ def self.metacyc
2358
+ "http://biocyc.org/META/NEW-IMAGE?type=ENZYME&object=$id"
2359
+ end
2360
+
2361
+ def self.metagrowth
2362
+ "http://igs-server.cnrs-mrs.fr/axenic-cgi/www_get_evdb?evdb+$id"
2363
+ end
2364
+
2365
+ def self.metatiger
2366
+ "http://www.bioinformatics.leeds.ac.uk/metatiger/cgi_bin/pathway.cgi?organism=[$id1]&network=[$id2]"
2367
+ end
2368
+
2369
+ def self.methycancer_cancer
2370
+ "http://methycancer.psych.ac.cn/cancerDetail.do?cancerid=$id"
2371
+ end
2372
+
2373
+ def self.methycancer_clone
2374
+ "http://methycancer.psych.ac.cn/cloneDetail.do?clonename=$id"
2375
+ end
2376
+
2377
+ def self.methycancer_gene
2378
+ "http://methycancer.psych.ac.cn/geneDetail.do?geneid=$id"
2379
+ end
2380
+
2381
+ def self.methycancer_methylation
2382
+ "http://methycancer.psych.ac.cn/methylationDetail.do?id=$id"
2383
+ end
2384
+
2385
+ def self.metnetdb
2386
+ "http://metnetonline.org/browse_pathway2.php?pthID=$id"
2387
+ end
2388
+
2389
+ def self.mfungd
2390
+ "http://mips.helmholtz-muenchen.de/genre/proj/mfungd/singleGeneReport.html?entry=$id"
2391
+ end
2392
+
2393
+ def self.mgc
2394
+ "http://mgc.nci.nih.gov/Tissues/LibInfo?LID=$id"
2395
+ end
2396
+
2397
+ def self.mgg
2398
+ "http://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$id"
2399
+ end
2400
+
2401
+ def self.mhcbn
2402
+ "http://www.imtech.res.in/cgibin/mhcbn/display.pl?field=sno&value=$id"
2403
+ end
2404
+
2405
+ def self.micado
2406
+ "http://genome.jouy.inra.fr/cgi-bin/micado/access.cgi?accessnumber=$id"
2407
+ end
2408
+
2409
+ def self.microkit
2410
+ "http://microkit.biocuckoo.org/html/$id.html"
2411
+ end
2412
+
2413
+ def self.millipore_pathways
2414
+ "http://www.millipore.com/pathways/pathviewer.do?searchTerms=&diseaseAreaIds=&pathwayId=$id"
2415
+ end
2416
+
2417
+ def self.mimi
2418
+ "http://mimi.ncibi.org/MimiWeb/gene-details-page-front.jsp?geneid=$id"
2419
+ end
2420
+
2421
+ def self.mirnamap
2422
+ "http://mirnamap.mbc.nctu.edu.tw/php/mirna_entry.php?acc=$id"
2423
+ end
2424
+
2425
+ def self.mirortho
2426
+ "http://cegg.unige.ch/mirortho/entry_details/$id"
2427
+ end
2428
+
2429
+ def self.mist
2430
+ "http://genomics.ornl.gov/mist/view_organism.php?organism_id=$id"
2431
+ end
2432
+
2433
+ def self.mitodat
2434
+ "http://www-lecb.ncifcrf.gov/mitoDat/$id.html"
2435
+ end
2436
+
2437
+ def self.mitoproteome
2438
+ "http://www.mitoproteome.org/data/proteome/index.cgi?db=mito&pid=L$id"
2439
+ end
2440
+
2441
+ def self.mmcd
2442
+ "http://mmcd.nmrfam.wisc.edu/test/cqsearch.py?cqid=$id"
2443
+ end
2444
+
2445
+ def self.mmsinc
2446
+ "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$id"
2447
+ end
2448
+
2449
+ def self.modomics
2450
+ "http://modomics.genesilico.pl/modification?modification_id=$id"
2451
+ end
2452
+
2453
+ def self.mokca
2454
+ "http://strubiol.icr.ac.uk/extra/mokca/mut_by_prot.php?protein_q=$id"
2455
+ end
2456
+
2457
+ def self.molmovdb
2458
+ "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$id"
2459
+ end
2460
+
2461
+ def self.mosdb
2462
+ "http://mips.helmholtz-muenchen.de/plant/rice/reportsjsp/contigReport.jsp?contig_id=$id"
2463
+ end
2464
+
2465
+ def self.mousecyc
2466
+ "http://mousecyc.jax.org/MOUSE/NEW-IMAGE?type=NIL&object=$id"
2467
+ end
2468
+
2469
+ def self.mp
2470
+ "http://www.informatics.jax.org/searches/Phat.cgi?id=$id"
2471
+ end
2472
+
2473
+ def self.mpd
2474
+ "http://phenome.jax.org/db/q?rtn=markers/details&reqsym=$id"
2475
+ end
2476
+
2477
+ def self.mtbd
2478
+ "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$id"
2479
+ end
2480
+
2481
+ def self.mtbreglist
2482
+ "http://pages.usherbrooke.ca/gaudreau/MtbRegList/www/genome_ir_manip.php?id=$id"
2483
+ end
2484
+
2485
+ def self.mulpssm
2486
+ "http://crick.mbu.iisc.ernet.in/mulpssm/cgi/disp_fam.cgi?dbase=[?pali/pfam]&name=$id"
2487
+ end
2488
+
2489
+ def self.mutdb
2490
+ "http://mutdb.org/cgi-bin/mutdb.pl?id=[?gene_symbol]&geneid=$id"
2491
+ end
2492
+
2493
+ def self.nascarrays
2494
+ "http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=$id"
2495
+ end
2496
+
2497
+ def self.natsdb
2498
+ "http://natsdb.cbi.pku.edu.cn/nats_list.php?sa_type=SA_20&represent=1&keyword_term=&species=[?species_name]&id=$id"
2499
+ end
2500
+
2501
+ def self.ncir
2502
+ "http://prion.bchs.uh.edu/bp_type/individual_record_page$id.html"
2503
+ end
2504
+
2505
+ def self.ncl_resource
2506
+ "http://www.ucl.ac.uk/ncl/$id.shtml"
2507
+ end
2508
+
2509
+ def self.ncrnas_database
2510
+ "http://ncrnadb.trna.ibch.poznan.pl/scripts/getdesc.cgi?id=$id"
2511
+ end
2512
+
2513
+ def self.ndb
2514
+ "http://ndbserver.rutgers.edu/atlas/nmr/structures/id/$id/$id.html"
2515
+ end
2516
+
2517
+ def self.neibank
2518
+ "http://neibank.nei.nih.gov/cgi-bin/showDataTable.cgi?lib=$id"
2519
+ end
2520
+
2521
+ def self.nembase
2522
+ "http://www.nematodes.org/nembase4/cluster.php?cluster=$id"
2523
+ end
2524
+
2525
+ def self.netbiochem
2526
+ "http://library.med.utah.edu/NetBiochem/$id.htm"
2527
+ end
2528
+
2529
+ def self.netpath
2530
+ "http://www.netpath.org/molecule?molecule_id=$id"
2531
+ end
2532
+
2533
+ def self.netpro
2534
+ "http://www.interactions.net.in/index_molreport.jsp?id=$id"
2535
+ end
2536
+
2537
+ def self.neumore
2538
+ "http://neumore.cis.usouthal.edu/ontologies/NeuMORE-v0.1.owl#$id"
2539
+ end
2540
+
2541
+ def self.nextbio
2542
+ "http://www.nextbio.com/b/search/ov/$id"
2543
+ end
2544
+
2545
+ def self.nif
2546
+ "http://www.neurolex.org/wiki/Category:$id"
2547
+ end
2548
+
2549
+ def self.nif_agency
2550
+ "http://www.neurolex.org/wiki/Category:$id"
2551
+ end
2552
+
2553
+ def self.nif_backend
2554
+ "http://www.neurolex.org/wiki/Category:$id"
2555
+ end
2556
+
2557
+ def self.nif_cell
2558
+ "http://www.neurolex.org/wiki/Category:$id"
2559
+ end
2560
+
2561
+ def self.nif_dysfunction
2562
+ "http://www.neurolex.org/wiki/Category:$id"
2563
+ end
2564
+
2565
+ def self.nif_grossanatomy
2566
+ "http://www.neurolex.org/wiki/Category:$id"
2567
+ end
2568
+
2569
+ def self.nif_investigation
2570
+ "http://www.neurolex.org/wiki/Category:$id"
2571
+ end
2572
+
2573
+ def self.nif_molecule
2574
+ "http://www.neurolex.org/wiki/Category:$id"
2575
+ end
2576
+
2577
+ def self.nmpdr
2578
+ "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$id"
2579
+ end
2580
+
2581
+ def self.norine
2582
+ "http://bioinfo.lifl.fr/norine/result.jsp?ID=$id"
2583
+ end
2584
+
2585
+ def self.npd
2586
+ "http://npd.hgu.mrc.ac.uk/user/$id"
2587
+ end
2588
+
2589
+ def self.nprd
2590
+ "http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+1JCHQ1bgqkg+-lib+$id"
2591
+ end
2592
+
2593
+ def self.ntdb
2594
+ "http://ntdb.chem.cuhk.edu.hk/data/$id.htm"
2595
+ end
2596
+
2597
+ def self.nursa
2598
+ "http://www.nursa.org/molecule.cfm?molType=[?molecule_type]&molId=$id"
2599
+ end
2600
+
2601
+ def self.odb
2602
+ "http://www.genome.sk.ritsumei.ac.jp/odb/odb2.rb?org=[?species]&genome_id=[?genome_id]&genes=$id"
2603
+ end
2604
+
2605
+ def self.ogd
2606
+ "http://www.oomycete.org/ogd/sequence.html?sequence_id=$id"
2607
+ end
2608
+
2609
+ def self.ogre
2610
+ "http://drake.mcmaster.ca/cgi-bin/ogre/featurelist.pl?genome=$id"
2611
+ end
2612
+
2613
+ def self.okcam
2614
+ "http://okcam.cbi.pku.edu.cn/entry-info.php?id=$id"
2615
+ end
2616
+
2617
+ def self.oma
2618
+ "http://www.omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$id"
2619
+ end
2620
+
2621
+ def self.operondb
2622
+ "http://operondb.cbcb.umd.edu/cgi-bin/operondb/pairs.cgi?taxon_id=$id"
2623
+ end
2624
+
2625
+ def self.ordb
2626
+ "http://senselab.med.yale.edu/ordb/eavdata.asp?o=$id"
2627
+ end
2628
+
2629
+ def self.oreganno
2630
+ "http://www.oreganno.org/oregano/recordview.action?recid=$id"
2631
+ end
2632
+
2633
+ def self.orenza
2634
+ "http://www.orenza.u-psud.fr/query_by_ec.php?EC_number=EC%20$id"
2635
+ end
2636
+
2637
+ def self.orfdb
2638
+ "http://orf.invitrogen.com/cgi-bin/ORFCard?&ORF=$id&set=UltimateORFs&hboxPath=keyword"
2639
+ end
2640
+
2641
+ def self.organelle_db
2642
+ "http://organelledb.lsi.umich.edu/gene.php?id=$id"
2643
+ end
2644
+
2645
+ def self.orthomcl
2646
+ "http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi?rm=sequenceList&groupac=$id"
2647
+ end
2648
+
2649
+ def self.oryzabase_mutant
2650
+ "http://www.shigen.nig.ac.jp/rice/oryzabase/genes/symbolDetailAction.do?mutantGeneId=$id"
2651
+ end
2652
+
2653
+ def self.oryzabase_strain
2654
+ "http://www.shigen.nig.ac.jp/rice/oryzabase/nbrpStrains/nigDetailAction.do?nigStrainId=$id"
2655
+ end
2656
+
2657
+ def self.otl
2658
+ "http://urgi.versailles.inra.fr/OryzaTagLine/cgi-bin/general_mutant.pl?line=$id"
2659
+ end
2660
+
2661
+ def self.p3db
2662
+ "http://digbio.missouri.edu/p3db/data/protein.php?id=$id"
2663
+ end
2664
+
2665
+ def self.pairsdb
2666
+ "http://pairsdb.csc.fi/?query=seqinfo&accnum=$id"
2667
+ end
2668
+
2669
+ def self.pali
2670
+ "http://pauling.mbu.iisc.ernet.in/~pali/cgi/members.cgi?famno=$id"
2671
+ end
2672
+
2673
+ def self.pandit
2674
+ "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$id"
2675
+ end
2676
+
2677
+ def self.panther_gene
2678
+ "http://www.pantherdb.org/genes/gene.do?acc=$id"
2679
+ end
2680
+
2681
+ def self.panther_ontology
2682
+ "http://www.pantherdb.org/panther/category.do?categoryAcc=$id"
2683
+ end
2684
+
2685
+ def self.partigenedb
2686
+ "http://www.compsysbio.org/partigene/cluster.php?cluster=$id"
2687
+ end
2688
+
2689
+ def self.pass2
2690
+ "http://caps.ncbs.res.in/cgi-bin/mini/databases/campass/pass/pass.cgi?code=$id"
2691
+ end
2692
+
2693
+ def self.pathfinder
2694
+ "http://www.sigmaaldrich.com/life-science/your-favorite-gene-search/pathway-overviews/$id.html"
2695
+ end
2696
+
2697
+ def self.pathguide
2698
+ "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$id"
2699
+ end
2700
+
2701
+ def self.pathoplant
2702
+ "http://www.pathoplant.de/detail.php?accNo=$id"
2703
+ end
2704
+
2705
+ def self.pathwayontology
2706
+ "http://rgd.mcw.edu/tools/ontology/ont_annot.cgi?term_key=$id&ontology=go"
2707
+ end
2708
+
2709
+ def self.patric
2710
+ "http://patricbrc.vbi.vt.edu/portal/portal/patric/Taxon?cType=taxon&cId=$id"
2711
+ end
2712
+
2713
+ def self.pdb_tm
2714
+ "http://pdbtm.enzim.hu/?m=show_entry&id=$id"
2715
+ end
2716
+
2717
+ def self.pdba
2718
+ "http://www.rcsb.org/pdb/explore/explore.do?structureId=$id"
2719
+ end
2720
+
2721
+ def self.pdtd
2722
+ "http://www.dddc.ac.cn/pdtd/detail.php?pdbId=$id"
2723
+ end
2724
+
2725
+ def self.pedant
2726
+ "http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=$id"
2727
+ end
2728
+
2729
+ def self.pede
2730
+ "http://pede.dna.affrc.go.jp/seq_search/assembly_info.php?release=$id&name=$id"
2731
+ end
2732
+
2733
+ def self.pepbank
2734
+ "http://pepbank.mgh.harvard.edu/interactions/details/$id"
2735
+ end
2736
+
2737
+ def self.pepr
2738
+ "http://pepr.cnmcresearch.org/browse.do?action=list_[?exp/?prj_exp]&[?exp/?project]Id=$id"
2739
+ end
2740
+
2741
+ def self.pgdb
2742
+ "http://www.urogene.org/pgdb/gene/$id.html"
2743
+ end
2744
+
2745
+ def self.pharmgkb
2746
+ "http://www.pharmgkb.org/do/serve?objId=$id"
2747
+ end
2748
+
2749
+ def self.phci2dpage
2750
+ "http://www.gram.au.dk/cgi-bin/get-2d-entry/def?$id"
2751
+ end
2752
+
2753
+ def self.pibase
2754
+ "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$id"
2755
+ end
2756
+
2757
+ def self.pig
2758
+ "http://molvis.vbi.vt.edu/pig/view/pig_protein_view.php?protein=$id"
2759
+ end
2760
+
2761
+ def self.piggis
2762
+ "http://pig.genomics.org.cn/transview.jsp?transcript=$id"
2763
+ end
2764
+
2765
+ def self.pigqtldb
2766
+ "http://www.animalgenome.org/cgi-bin/QTLdb/SS/qdetails?QTL_ID=$id"
2767
+ end
2768
+
2769
+ def self.pips
2770
+ "http://www.compbio.dundee.ac.uk/www-pips/Identifier.jsp?ID=$id&Interactions=Prot&LR=1.0&modules=on"
2771
+ end
2772
+
2773
+ def self.pisite
2774
+ "http://pisite.hgc.jp/cgi-bin/view.cgi?pdbid=$id&chain=[?chain]"
2775
+ end
2776
+
2777
+ def self.plantcyc
2778
+ "http://pmn.plantcyc.org/PLANT/NEW-IMAGE?type=GENE&object=$id"
2779
+ end
2780
+
2781
+ def self.plantsp_plantst
2782
+ "http://plantst.genomics.purdue.edu/cgi-bin/detail.cgi?db=plants[?t/?p]&id=$id"
2783
+ end
2784
+
2785
+ def self.planttfdb
2786
+ "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=[?species_name]&did=$id"
2787
+ end
2788
+
2789
+ def self.planttribes
2790
+ "http://fgp.huck.psu.edu/tribedb/gene.pl?action=view_gene&gene_id=$id"
2791
+ end
2792
+
2793
+ def self.plasmid
2794
+ "http://plasmid.med.harvard.edu/PLASMID/GetCollection.do?collectionName=$id"
2795
+ end
2796
+
2797
+ def self.plpmdb
2798
+ "http://www.studiofmp.com/plpmdb/mutant.asp?Id=$id"
2799
+ end
2800
+
2801
+ def self.plprot
2802
+ "http://www.plprot.ethz.ch/index.php?page=ProteinDetails&plp_id=$id&organism=[?species_name]"
2803
+ end
2804
+
2805
+ def self.pmd
2806
+ "http://spock.genes.nig.ac.jp/~pmd/cgi-bin/PMD/PMDentry.pl.cgi?$id"
2807
+ end
2808
+
2809
+ def self.pod
2810
+ "http://podb.nibb.ac.jp/Organellome/bin/browseImage.php?ID=Image-toshi_biochem.tohoku.ac.jp-$id"
2811
+ end
2812
+
2813
+ def self.pogs_plantrbp
2814
+ "http://plantrbp.uoregon.edu/pogView.php?id=$id"
2815
+ end
2816
+
2817
+ def self.polya_db
2818
+ "http://polya.umdnj.edu/polya_db2/gene.php?llid=$id"
2819
+ end
2820
+
2821
+ def self.polydoms
2822
+ "http://polydoms.cchmc.org/polydoms/GD?DISP_OPTION=[?NonSynonymous/Synonymous]&field1=$id"
2823
+ end
2824
+
2825
+ def self.polymorphix
2826
+ "http://pbil.univ-lyon1.fr/cgi-bin/acnuc-dispfam?query=$id&db=Polymorphix"
2827
+ end
2828
+
2829
+ def self.poxvirus_gene
2830
+ "http://www.poxvirus.org/gene_detail.asp?gene_id=$id"
2831
+ end
2832
+
2833
+ def self.poxvirus_genome
2834
+ "http://www.poxvirus.org/map.asp?genome_id=$id"
2835
+ end
2836
+
2837
+ def self.precise
2838
+ "http://precise.bu.edu/Output.aspx?UniqueID=$id"
2839
+ end
2840
+
2841
+ def self.premod
2842
+ "http://genomequebec.mcgill.ca/PReMod/show/module.do?method=showModule&moduleId=$id"
2843
+ end
2844
+
2845
+ def self.priam
2846
+ "http://prodomweb.univ-lyon1.fr/priam/cgi-bin/ReqPRIAM_png.pl?priam_release=OCT11&priam_ac=$id"
2847
+ end
2848
+
2849
+ def self.prime
2850
+ "http://prime.ontology.ims.u-tokyo.ac.jp:8081/php/DbDispProtein.php?proteinID=$id"
2851
+ end
2852
+
2853
+ def self.prints
2854
+ "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/PRINTS/DoPRINTS.pl?cmd_a=Display&qua_a=/Full&fun_a=Code&qst_a=$id"
2855
+ end
2856
+
2857
+ def self.procognate
2858
+ "http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/procognate/PDBquery.pl?PDBcode=$id&Classification=[?CATH/?SCOP/?Pfam]"
2859
+ end
2860
+
2861
+ def self.prodoric_bindingsite
2862
+ "http://prodoric.tu-bs.de/site.php?site_acc=$id"
2863
+ end
2864
+
2865
+ def self.prodoric_expression
2866
+ "http://prodoric.tu-bs.de/profile.php?profile_acc=$id"
2867
+ end
2868
+
2869
+ def self.prodoric_gene
2870
+ "http://prodoric.tu-bs.de/gene.php?gene_acc=$id"
2871
+ end
2872
+
2873
+ def self.prodoric_protein
2874
+ "http://prodoric.tu-bs.de/protein.php?protein_acc=$id"
2875
+ end
2876
+
2877
+ def self.promex
2878
+ "http://promex.pph.univie.ac.at/promex/?spec=$id"
2879
+ end
2880
+
2881
+ def self.promise
2882
+ "http://metallo.scripps.edu/PROMISE/$id.html"
2883
+ end
2884
+
2885
+ def self.pronit
2886
+ "http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/pronit/new/bind_entry.pl?ENTRY=$id"
2887
+ end
2888
+
2889
+ def self.prorule
2890
+ "http://www.expasy.org/cgi-bin/prosite/ScanView.cgi?scanfile=$id"
2891
+ end
2892
+
2893
+ def self.protcom
2894
+ "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$id"
2895
+ end
2896
+
2897
+ def self.protherm
2898
+ "http://gibk26.bse.kyutech.ac.jp/cgi-bin/jouhou/protherm/pp_entry.pl?ENTRY=$id"
2899
+ end
2900
+
2901
+ def self.psd
2902
+ "http://bioinf.scri.sari.ac.uk/cgi-bin/plant_snorna/get-sno-sequence-and-allignments?id=$id"
2903
+ end
2904
+
2905
+ def self.pseudobase
2906
+ "http://www.ekevanbatenburg.nl/PKBASE/$id.HTML"
2907
+ end
2908
+
2909
+ def self.pseudocap
2910
+ "http://www.pseudomonas.com/getAnnotation.do?locusID=$id"
2911
+ end
2912
+
2913
+ def self.pseudogene
2914
+ "http://tables.pseudogene.org/[?species_name]/$id"
2915
+ end
2916
+
2917
+ def self.pstiing
2918
+ "http://pstiing.licr.org/search/c_proteininfo.jsp?uniprot_id=$id"
2919
+ end
2920
+
2921
+ def self.ptmswitchboard
2922
+ "http://cagr.pcbi.upenn.edu/PTMswitchboard/jsp/detail.jsp?ID=$id"
2923
+ end
2924
+
2925
+ def self.pubmeth
2926
+ "http://matrix.ugent.be/temp/static/$id.html"
2927
+ end
2928
+
2929
+ def self.qppd
2930
+ "http://lpgws.nci.nih.gov/cgi-bin/PrimerViewer?acc=$id"
2931
+ end
2932
+
2933
+ def self.rad
2934
+ "http://rad.dna.affrc.go.jp/SY-1102-cgi-bin/rad/PCA/ctl_frame.cgi?clone=$id"
2935
+ end
2936
+
2937
+ def self.rapdb
2938
+ "http://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/build5?name=[$id"
2939
+ end
2940
+
2941
+ def self.rapid
2942
+ "http://rapid.rcai.riken.jp/RAPID/diseasePhenotype?pid_id=$id"
2943
+ end
2944
+
2945
+ def self.rarge
2946
+ "http://rarge.psc.riken.jp/dsmutant/detail.pl?keyword=$id"
2947
+ end
2948
+
2949
+ def self.ratmap
2950
+ "http://ratmap.org/Showgene.php?gene_stable_id=$id"
2951
+ end
2952
+
2953
+ def self.rcd
2954
+ "http://purl.bioontology.org/ontology/RCD/$id"
2955
+ end
2956
+
2957
+ def self.recode
2958
+ "http://recode.ucc.ie/recode/$id/"
2959
+ end
2960
+
2961
+ def self.redfly
2962
+ "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$id"
2963
+ end
2964
+
2965
+ def self.redidb
2966
+ "http://biologia.unical.it/py_script/cgi-bin/retrieve.py?query=$id"
2967
+ end
2968
+
2969
+ def self.regtransbase
2970
+ "http://regtransbase.lbl.gov/cgi-bin/regtransbase?page=geneinfo&seqfeature_id=$id"
2971
+ end
2972
+
2973
+ def self.regulondb
2974
+ "http://regulondb.ccg.unam.mx/GeneController?key_id_org=ECK12&gene_id=$id&type=jsp"
2975
+ end
2976
+
2977
+ def self.replicationdomain
2978
+ "http://www.replicationdomain.com/view-dataset.php?RecordID=$id"
2979
+ end
2980
+
2981
+ def self.repo
2982
+ "http://purl.bioontology.org/ontology/REPO.owl#$id"
2983
+ end
2984
+
2985
+ def self.reproduction2dpage
2986
+ "http://reprod.njmu.edu.cn/cgi-bin/2d/2d.cgi?ac=$id"
2987
+ end
2988
+
2989
+ def self.rfam
2990
+ "http://rfam.sanger.ac.uk/family/$id"
2991
+ end
2992
+
2993
+ def self.rgd_gene
2994
+ "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=$id"
2995
+ end
2996
+
2997
+ def self.rgd_qtl
2998
+ "http://rgd.mcw.edu/objectSearch/qtlReport.jsp?rgd_id=$id"
2999
+ end
3000
+
3001
+ def self.rgd_ref
3002
+ "http://rgd.mcw.edu/tools/references/references_view.cgi?id=$id"
3003
+ end
3004
+
3005
+ def self.rgd_strain
3006
+ "http://rgd.mcw.edu/tools/strains/strains_view.cgi?id=$id"
3007
+ end
3008
+
3009
+ def self.rh_mesh
3010
+ "http://bioonto.de/mesh.owl#$id"
3011
+ end
3012
+
3013
+ def self.rice_pipeline
3014
+ "http://cdna01.dna.affrc.go.jp/cDNA/report/$id.html"
3015
+ end
3016
+
3017
+ def self.ricecyc
3018
+ "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$id"
3019
+ end
3020
+
3021
+ def self.rissc
3022
+ "http://egg.umh.es/rissc/fich.php?accession=$id"
3023
+ end
3024
+
3025
+ def self.rkd
3026
+ "http://phylomics.ucdavis.edu/kinase/tree.php?fam=$id"
3027
+ end
3028
+
3029
+ def self.rmd
3030
+ "http://ribosome.fandm.edu/node/$id"
3031
+ end
3032
+
3033
+ def self.rna_sstrand
3034
+ "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$id"
3035
+ end
3036
+
3037
+ def self.rnajunction
3038
+ "http://rnajunction.abcc.ncifcrf.gov/JunctionPage.php?jid=$id"
3039
+ end
3040
+
3041
+ def self.rnao
3042
+ "http://purl.obolibrary.org/obo/$id"
3043
+ end
3044
+
3045
+ def self.rnrdb
3046
+ "http://rnrdb.molbio.su.se/proteins_for_organism.html?organism_nr=$id"
3047
+ end
3048
+
3049
+ def self.roleo
3050
+ "http://purl.obolibrary.org/obo/$id"
3051
+ end
3052
+
3053
+ def self.rospath_pc
3054
+ "http://rospath.ewha.ac.kr/complex/ProteinComplexDetailFrm.jsp?ENTITY_ID=$id"
3055
+ end
3056
+
3057
+ def self.rospath_protein
3058
+ "http://rospath.ewha.ac.kr/protein/ProteinDetailFrm.jsp?ENTITY_ID=$id"
3059
+ end
3060
+
3061
+ def self.rospath_signalling
3062
+ "http://rospath.ewha.ac.kr/signaling/SignalingDetailFrm.jsp?SIGNALING_ID=$id"
3063
+ end
3064
+
3065
+ def self.rospath_transition
3066
+ "http://rospath.ewha.ac.kr/interaction/ProteinTransitionDetailFrm.jsp?ENTITY_ID=$id"
3067
+ end
3068
+
3069
+ def self.rpg
3070
+ "http://ribosome.miyazaki-med.ac.jp/rpg.cgi?mode=gene&id=$id"
3071
+ end
3072
+
3073
+ def self.rs
3074
+ "http://purl.obolibrary.org/obo/$id"
3075
+ end
3076
+
3077
+ def self.rtcgd
3078
+ "http://rtcgd.abcc.ncifcrf.gov/cgi-bin/mm9/clone_finder.cgi?query=$id"
3079
+ end
3080
+
3081
+ def self.rtprimerdb
3082
+ "http://medgen.ugent.be/rtprimerdb/assay_report.php?assay_id=$id"
3083
+ end
3084
+
3085
+ def self.rvd
3086
+ "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$id"
3087
+ end
3088
+
3089
+ def self.s_mart_db
3090
+ "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$id"
3091
+ end
3092
+
3093
+ def self.salad
3094
+ "http://salad.dna.affrc.go.jp/CGViewer/en/v3.0/cgv_clust_view.jsp?pfamid=$id"
3095
+ end
3096
+
3097
+ def self.sbase
3098
+ "http://hydra.icgeb.trieste.it/sbase/sbase.php?sec=search&sub=group&group_id=$id"
3099
+ end
3100
+
3101
+ def self.scadb
3102
+ "http://ymbc.ym.edu.tw/cgi-bin/SCAdb_ensembl/aroundSTR.cgi?sca_type=SCA1&type=CAG&repeats_id=$id"
3103
+ end
3104
+
3105
+ def self.schistodb
3106
+ "http://schistocyc.schistodb.net/ptools/SM/NEW-IMAGE?type=GENE&object=$id"
3107
+ end
3108
+
3109
+ def self.scmd
3110
+ "http://yeast.gi.k.u-tokyo.ac.jp/datamine/ViewStats.do?orf=$id"
3111
+ end
3112
+
3113
+ def self.scpd
3114
+ "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$id"
3115
+ end
3116
+
3117
+ def self.sdap
3118
+ "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$id"
3119
+ end
3120
+
3121
+ def self.sdr
3122
+ "http://paradox.harvard.edu/sdr/families/$id/$id_main.html"
3123
+ end
3124
+
3125
+ def self.seedgenes
3126
+ "http://www.seedgenes.org/SeedGeneProfile?geneSymbol=$id"
3127
+ end
3128
+
3129
+ def self.selenodb
3130
+ "http://www.selenodb.org/cgi-perl/feature_report.pl?feature=$id_1.0"
3131
+ end
3132
+
3133
+ def self.sheepqtldb
3134
+ "http://www.animalgenome.org/cgi-bin/QTLdb/OA/qdetails?QTL_ID=$id"
3135
+ end
3136
+
3137
+ def self.shibase
3138
+ "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$id"
3139
+ end
3140
+
3141
+ def self.shr
3142
+ "http://www.shojaee.com/shr/shr.owl#$id"
3143
+ end
3144
+
3145
+ def self.siege
3146
+ "http://pulm.bumc.bu.edu/cgi-bin/siegeDB/siege_html/compsearchgraph.cgi?$id"
3147
+ end
3148
+
3149
+ def self.siena2dpage
3150
+ "http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi?ac=$id"
3151
+ end
3152
+
3153
+ def self.silkdb
3154
+ "http://www.silkdb.org/cgi-bin/gbrowse/silkdb/?name=$id"
3155
+ end
3156
+
3157
+ def self.silva
3158
+ "http://www.arb-silva.de/browser/ssu/$id/embl/?tx_pmtree_pi1[pid]=$id"
3159
+ end
3160
+
3161
+ def self.sisyphus
3162
+ "http://sisyphus.mrc-cpe.cam.ac.uk/sisyphus/alignment.jsp?ac=$id"
3163
+ end
3164
+
3165
+ def self.smr
3166
+ "http://swissmodel.expasy.org/repository/?pid=$id&uid=&token=&zid=async"
3167
+ end
3168
+
3169
+ def self.snap
3170
+ "http://snap.humgen.au.dk/views/geneview.cgi?gene=$id"
3171
+ end
3172
+
3173
+ def self.snornalbmedb
3174
+ "http://www-snorna.biotoul.fr/plus.php?id=$id"
3175
+ end
3176
+
3177
+ def self.snp2nmd
3178
+ "http://variome.kobic.re.kr/SNP2NMD/snp2nmd.jsp?id=$id&rule=50"
3179
+ end
3180
+
3181
+ def self.snp500cancer
3182
+ "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$id"
3183
+ end
3184
+
3185
+ def self.snpeffect
3186
+ "http://snpeffect.vib.be/snp_main.php?id=$id"
3187
+ end
3188
+
3189
+ def self.soy
3190
+ "http://purl.obolibrary.org/obo/$id"
3191
+ end
3192
+
3193
+ def self.spbase
3194
+ "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$id"
3195
+ end
3196
+
3197
+ def self.spd
3198
+ "http://spd.cbi.pku.edu.cn/spd_pro.php?id=$id"
3199
+ end
3200
+
3201
+ def self.spdo
3202
+ "http://purl.obolibrary.org/obo/$id"
3203
+ end
3204
+
3205
+ def self.spliceinfo
3206
+ "http://spliceinfo.mbc.nctu.edu.tw/info_show.php?gs_id=$id"
3207
+ end
3208
+
3209
+ def self.splicenest
3210
+ "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$id"
3211
+ end
3212
+
3213
+ def self.spodobase
3214
+ "http://bioweb.ensam.inra.fr/Spodopterav3/sequence?name=$id&class=Sequence"
3215
+ end
3216
+
3217
+ def self.spto
3218
+ "http://purl.obolibrary.org/obo/$id"
3219
+ end
3220
+
3221
+ def self.srd
3222
+ "http://rapeseed.plantsignal.cn/viewGene.do?id=$id"
3223
+ end
3224
+
3225
+ def self.srpdb
3226
+ "http://rnp.uthct.edu/rnp/SRPDB/rna/sequences/fasta/$id.fasta"
3227
+ end
3228
+
3229
+ def self.sstoss
3230
+ "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$id"
3231
+ end
3232
+
3233
+ def self.straininfonet
3234
+ "http://www.straininfo.net/taxa/$id"
3235
+ end
3236
+
3237
+ def self.strepto_db
3238
+ "http://oger.tu-bs.de/websites/query_result.php?index=1&dbno=$id"
3239
+ end
3240
+
3241
+ def self.suba
3242
+ "http://suba.plantenergy.uwa.edu.au/flatfile.php?id=$id"
3243
+ end
3244
+
3245
+ def self.sulfolobus
3246
+ "http://www.sulfolobus.org/cbin/mutagen.pl?page=misc&gidinfo=$id"
3247
+ end
3248
+
3249
+ def self.superdrug
3250
+ "http://bioinf.charite.de/superdrug/fullinfo.php?cas=$id"
3251
+ end
3252
+
3253
+ def self.superhapten
3254
+ "http://bioinformatics.charite.de/superhapten/fullinfo_hapten_chime.php?id=$id"
3255
+ end
3256
+
3257
+ def self.supernatural
3258
+ "http://bioinformatics.charite.de/supernatural/marvin/fullinfo_roempp_marvin.php?cas=$id"
3259
+ end
3260
+
3261
+ def self.superscent
3262
+ "http://bioinformatics.charite.de/superscent/src/fullinfo.php?cas=$id"
3263
+ end
3264
+
3265
+ def self.supersite
3266
+ "http://bioinf-tomcat.charite.de/supersite/resultPDB.faces?pdbid=$id"
3267
+ end
3268
+
3269
+ def self.supertoxic
3270
+ "http://bioinformatics.charite.de/supertoxic/index.php?site=detail_view&ids=($id)"
3271
+ end
3272
+
3273
+ def self.supfam
3274
+ "http://pauling.mbu.iisc.ernet.in/supfam/cgi/display_pfam.cgi?name=$id"
3275
+ end
3276
+
3277
+ def self.swiss2dpage
3278
+ "http://ca.expasy.org/swiss-2dpage/ac=$id"
3279
+ end
3280
+
3281
+ def self.syfpeithi
3282
+ "http://www.ebi.ac.uk/cgi-bin/emblfetch?$id"
3283
+ end
3284
+
3285
+ def self.symptom
3286
+ "http://purl.obolibrary.org/obo/$id"
3287
+ end
3288
+
3289
+ def self.sysbodyfluid
3290
+ "http://www.biosino.org/bodyfluid/protein.jsp?proteinID=$id"
3291
+ end
3292
+
3293
+ def self.systers
3294
+ "http://systers.molgen.mpg.de/cgi-bin/nph-fetchcluster.pl?CLNR=$id"
3295
+ end
3296
+
3297
+ def self.systomonas_compound
3298
+ "http://www.systomonas.de/compound.php?cp_acc=$id"
3299
+ end
3300
+
3301
+ def self.systomonas_gene
3302
+ "http://www.systomonas.de/gene.php?ge_acc=$id"
3303
+ end
3304
+
3305
+ def self.systomonas_interaction
3306
+ "http://www.systomonas.de/interaction.php?ia_acc=$id"
3307
+ end
3308
+
3309
+ def self.systomonas_pathways
3310
+ "http://www.systomonas.de/pathway.php?pa_acc=$id"
3311
+ end
3312
+
3313
+ def self.systomonas_protein
3314
+ "http://www.systomonas.de/protein.php?pr_acc=$id"
3315
+ end
3316
+
3317
+ def self.t1dbase
3318
+ "http://t1dbase.org/page/Overview/display/gene_id/$id"
3319
+ end
3320
+
3321
+ def self.taed
3322
+ "http://www.sbc.su.se/~malin_a/TAEDcorr/$id.html"
3323
+ end
3324
+
3325
+ def self.tao
3326
+ "http://purl.obolibrary.org/obo/$id"
3327
+ end
3328
+
3329
+ def self.taxrank
3330
+ "http://purl.obolibrary.org/obo/$id"
3331
+ end
3332
+
3333
+ def self.tbdb
3334
+ "http://genome.tbdb.org/annotation/genome/tbdb/GeneDetails.html?sp=$id"
3335
+ end
3336
+
3337
+ def self.tbestdb
3338
+ "http://tbestdb.bcm.umontreal.ca/searches/contig.php?conDeID=$id"
3339
+ end
3340
+
3341
+ def self.tc7ap
3342
+ "http://www.chr7.org/cgi-bin/geneview?id=$id"
3343
+ end
3344
+
3345
+ def self.tccd
3346
+ "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$id"
3347
+ end
3348
+
3349
+ def self.tcruzidb
3350
+ "http://tcruzidb.org/tcruzidb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=$id"
3351
+ end
3352
+
3353
+ def self.tecrdb
3354
+ "http://xpdb.nist.gov/enzyme_thermodynamics/enzyme_data1.pl?T1=$id"
3355
+ end
3356
+
3357
+ def self.tess
3358
+ "http://www.cbil.upenn.edu/cgi-bin/tess/tess?request=FCT-DBRTRV-Accno&key=$id"
3359
+ end
3360
+
3361
+ def self.tgd
3362
+ "http://phage.bioc.tulane.edu/cgi-bin/gbrowse/$id?name=$id"
3363
+ end
3364
+
3365
+ def self.tgdb
3366
+ "http://www.tumor-gene.org/cgi-bin/TGDB/tgdb_fetch_gene.cgi?gene=$id"
3367
+ end
3368
+
3369
+ def self.tgi
3370
+ "http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=$id"
3371
+ end
3372
+
3373
+ def self.tied
3374
+ "http://www.iedb.org/epId/$id"
3375
+ end
3376
+
3377
+ def self.tol
3378
+ "http://tolweb.org/$id"
3379
+ end
3380
+
3381
+ def self.tomatest_db
3382
+ "http://biosrv.cab.unina.it/solestdb/clusterview.php?clid=$id"
3383
+ end
3384
+
3385
+ def self.topdb
3386
+ "http://topdb.enzim.hu/?m=show&id=$id"
3387
+ end
3388
+
3389
+ def self.toxodb
3390
+ "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$id"
3391
+ end
3392
+
3393
+ def self.tpdb
3394
+ "http://tpdb.medchem.ku.edu:8080/protein_database/protein_details.jsp?prot_id=$id"
3395
+ end
3396
+
3397
+ def self.tpmd
3398
+ "http://tpmd2.nhri.org.tw/tpmd/php-bin/filter.php?search=$id"
3399
+ end
3400
+
3401
+ def self.tptad
3402
+ "http://plantta.jcvi.org/cgi-bin/plantta_report.pl?ta=$id"
3403
+ end
3404
+
3405
+ def self.transfactomedb
3406
+ "http://bussemaker.bio.columbia.edu:8080/ytdb-cgi/[?RNA/?DNA]/ViewPSAM?ms=[?RNA/?DNA]&M=$id"
3407
+ end
3408
+
3409
+ def self.transportdb
3410
+ "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$id"
3411
+ end
3412
+
3413
+ def self.transterm
3414
+ "http://mrna.otago.ac.nz/cgi-bin/tt_data_browse/RNAMotif?PatID=$id"
3415
+ end
3416
+
3417
+ def self.tred
3418
+ "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$id"
3419
+ end
3420
+
3421
+ def self.treefam
3422
+ "http://www.treefam.org/cgi-bin/TFinfo.pl?ac=$id"
3423
+ end
3424
+
3425
+ def self.trmp
3426
+ "http://bidd.nus.edu.sg/group/pathway/$id"
3427
+ end
3428
+
3429
+ def self.trnadbce
3430
+ "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$id"
3431
+ end
3432
+
3433
+ def self.tto
3434
+ "http://purl.obolibrary.org/obo/$id"
3435
+ end
3436
+
3437
+ def self.tuberculist
3438
+ "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$id"
3439
+ end
3440
+
3441
+ def self.uagb
3442
+ "http://archaea.ucsc.edu/cgi-bin/hgGateway?db=$id"
3443
+ end
3444
+
3445
+ def self.ugmicrosatdb
3446
+ "http://www.veenuash.info/veenu/chromo.asp?ns=$id"
3447
+ end
3448
+
3449
+ def self.uniref
3450
+ "http://www.uniprot.org/uniref/$id"
3451
+ end
3452
+
3453
+ def self.unprot_keywords
3454
+ "http://www.uniprot.org/keywords/$id"
3455
+ end
3456
+
3457
+ def self.utrdb_utrsite
3458
+ "http://utrdb.ba.itb.cnr.it/getgene/$id"
3459
+ end
3460
+
3461
+ def self.utrome
3462
+ "http://128.122.61.5/cgi-bin/UTRome/utrome.cgi?action=gene&geneid=$id"
3463
+ end
3464
+
3465
+ def self.vega
3466
+ "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$id"
3467
+ end
3468
+
3469
+ def self.vfdb
3470
+ "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$id"
3471
+ end
3472
+
3473
+ def self.viperdb
3474
+ "http://viperdb.scripps.edu/info_page.php?VDB=$id"
3475
+ end
3476
+
3477
+ def self.virmirdb
3478
+ "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$id"
3479
+ end
3480
+
3481
+ def self.viroligo
3482
+ "http://viroligo.okstate.edu/main.php?vid=$id"
3483
+ end
3484
+
3485
+ def self.vita
3486
+ "http://vita.mbc.nctu.edu.tw/search.php?acc=$id"
3487
+ end
3488
+
3489
+ def self.vkcdb
3490
+ "http://vkcdb.biology.ualberta.ca/cgi-bin/vkcdb/vkcdb-scp/entry.cgi?vkcid=$id"
3491
+ end
3492
+
3493
+ def self.vmd
3494
+ "http://vmd.vbi.vt.edu/cgi-bin/browse/browserDetail_new.cgi?ID=$id"
3495
+ end
3496
+
3497
+ def self.vz
3498
+ "http://viralzone.expasy.org/all_by_protein/$id.html"
3499
+ end
3500
+
3501
+ def self.wbbt
3502
+ "http://wormbase.org/db/ontology/anatomy?name=$id"
3503
+ end
3504
+
3505
+ def self.wbls
3506
+ "http://purl.obolibrary.org/obo/$id"
3507
+ end
3508
+
3509
+ def self.wbphenotype
3510
+ "http://purl.obolibrary.org/obo/$id"
3511
+ end
3512
+
3513
+ def self.webelements
3514
+ "http://webelements.com/$id"
3515
+ end
3516
+
3517
+ def self.wfleabase
3518
+ "http://wfleabase.org/genepage/daphnia/$id"
3519
+ end
3520
+
3521
+ def self.world2dpage
3522
+ "http://world-2dpage.expasy.org/repository/database=$id"
3523
+ end
3524
+
3525
+ def self.wormbase_gene
3526
+ "http://www.wormbase.org/species/c_elegans/gene/$id"
3527
+ end
3528
+
3529
+ def self.wormbase_rnai
3530
+ "http://www.wormbase.org/species/c_elegans/rnai/$id"
3531
+ end
3532
+
3533
+ def self.wormbook
3534
+ "http://www.wormbook.org/chapters/$id"
3535
+ end
3536
+
3537
+ def self.xao
3538
+ "http://www.xenbase.org/anatomy/static/organs/$id.jsp"
3539
+ end
3540
+
3541
+ def self.ycmn_complex
3542
+ "http://www.comp-sys-bio.org/yeastnet/v4/showComplexes.php?complex_id=$id"
3543
+ end
3544
+
3545
+ def self.ycmn_compound
3546
+ "http://www.comp-sys-bio.org/yeastnet/v4/showCompounds.php?cpd_id=$id"
3547
+ end
3548
+
3549
+ def self.ycmn_gene
3550
+ "http://www.comp-sys-bio.org/yeastnet/v4/showGenes.php?gene_id=$id"
3551
+ end
3552
+
3553
+ def self.ycmn_protein
3554
+ "http://www.comp-sys-bio.org/yeastnet/v4/showProteins.php?protein_id=$id"
3555
+ end
3556
+
3557
+ def self.ycmn_reaction
3558
+ "http://www.comp-sys-bio.org/yeastnet/v4/showEvents.php?event_id=$id"
3559
+ end
3560
+
3561
+ def self.yeastfunc
3562
+ "http://func.med.harvard.edu/yeast/genes/list_functional_scores/$id"
3563
+ end
3564
+
3565
+ def self.yeastract
3566
+ "http://www.yeastract.com/view.php?existing=locus&orfname=$id"
3567
+ end
3568
+
3569
+ def self.ygob
3570
+ "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$id"
3571
+ end
3572
+
3573
+ def self.yh_database
3574
+ "http://yh.genomics.org.cn/mapview.jsp?path=$id"
3575
+ end
3576
+
3577
+ def self.yrc
3578
+ "http://www.yeastrc.org/pdr/viewProtein.do?id=$id"
3579
+ end
3580
+
3581
+ def self.ysd
3582
+ "http://people.biochem.umass.edu/sfournier/fournierlab/snornadb/snrs/$id.php"
3583
+ end
3584
+
3585
+ def self.zfa
3586
+ "http://purl.obolibrary.org/obo/$id"
3587
+ end
3588
+
3589
+ def self.zifdb
3590
+ "http://bindr.gdcb.iastate.edu:8080/ZiFDB/controller/checkArticle?artId=$id"
3591
+ end
3592
+
3593
+ end
3594
+
3595
+ end