biodiversity19 3.1.5 → 3.1.6
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- checksums.yaml +4 -4
- data/.rubocop.yml +10 -0
- data/.ruby-version +1 -1
- data/CHANGELOG +2 -0
- data/LICENSE +1 -1
- data/README.md +3 -3
- data/Rakefile +14 -14
- data/biodiversity.gemspec +19 -19
- data/lib/biodiversity/parser.rb +1 -1
- data/lib/biodiversity/parser/scientific_name_canonical.rb +13 -13
- data/lib/biodiversity/parser/scientific_name_canonical.treetop +17 -17
- data/lib/biodiversity/parser/scientific_name_clean.rb +163 -131
- data/lib/biodiversity/parser/scientific_name_clean.treetop +62 -56
- data/lib/biodiversity/parser/scientific_name_dirty.rb +36 -36
- data/lib/biodiversity/parser/scientific_name_dirty.treetop +50 -53
- data/lib/biodiversity/version.rb +2 -2
- data/spec/files/test_data.txt +6 -1
- data/spec/parser/scientific_name_canonical_spec.rb +21 -21
- data/spec/parser/scientific_name_clean_spec.rb +750 -500
- data/spec/parser/scientific_name_dirty_spec.rb +91 -90
- data/spec/parser/scientific_name_spec.rb +3 -1
- data/spec/spec_helper.rb +21 -21
- metadata +17 -16
@@ -5,21 +5,21 @@ grammar ScientificNameDirty
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5
5
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rule root
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6
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space a:scientific_name_5 space {
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7
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def value
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8
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-
a.value.gsub(/\s{2,}/,
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8
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+
a.value.gsub(/\s{2,}/, " ").strip
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9
9
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end
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10
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-
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10
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+
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def canonical
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12
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-
a.canonical.gsub(/\s{2,}/,
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+
a.canonical.gsub(/\s{2,}/, " ").strip
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end
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-
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14
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+
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def pos
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a.pos
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end
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-
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+
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19
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def hybrid
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a.hybrid
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end
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-
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+
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def details
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a.details.class == Array ? a.details : [a.details]
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end
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@@ -35,15 +35,15 @@ grammar ScientificNameDirty
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def value
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a.value
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end
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-
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+
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def canonical
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a.canonical
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end
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-
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+
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def pos
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a.pos
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end
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-
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46
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+
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def details
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a.details
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end
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@@ -57,15 +57,15 @@ grammar ScientificNameDirty
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def value
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a.value + " " + b.value
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end
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60
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-
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60
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+
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61
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def canonical
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a.canonical
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end
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64
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-
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64
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+
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def pos
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a.pos.merge(b.pos)
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end
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68
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-
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68
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+
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def details
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{:infraspecies => a.details[:infraspecies].merge(b.details)}
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71
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end
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@@ -75,15 +75,15 @@ grammar ScientificNameDirty
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def value
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a.value + " " + b.value
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end
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-
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+
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def canonical
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a.canonical
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end
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-
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+
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def pos
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a.pos.merge(b.pos)
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end
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86
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-
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+
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def details
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{:infraspecies => a.details[:infraspecies].merge(b.details)}
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end
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@@ -91,21 +91,21 @@ grammar ScientificNameDirty
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91
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/
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super
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end
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-
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+
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rule species
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a:species_string space b:year {
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def value
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a.value + " " + b.value
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end
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100
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-
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100
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+
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def canonical
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a.canonical
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end
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-
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+
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def pos
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a.pos.merge(b.pos)
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end
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-
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+
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def details
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{:species => a.details[:species].merge(b.details)}
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end
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@@ -117,14 +117,14 @@ grammar ScientificNameDirty
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rule latin_word
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a:[a-z\-æœàâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž] b:valid_name_letters {
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def value
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120
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-
res =
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-
text_value.split(
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-
l =
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-
l =
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+
res = ""
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text_value.split("").each do |l|
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l = "ae" if l == "æ"
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l = "oe" if l == "œ"
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res << l
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end
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-
res.tr(
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-
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res.tr("àâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž",
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"aaaaaacceeeiiinnnoooooouuurrrsssz")
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end
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}
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end
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@@ -132,14 +132,14 @@ grammar ScientificNameDirty
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rule valid_name_letters
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[a-z\-æœàâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž]+ {
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def value
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-
res =
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-
text_value.split(
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-
l =
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-
l =
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res = ""
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text_value.split("").each do |l|
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l = "ae" if l == "æ"
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l = "oe" if l == "œ"
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res << l
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end
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-
res.tr(
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-
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+
res.tr("àâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž",
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"aaaaaacceeeiiinnnoooooouuurrrsssz")
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end
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}
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@@ -150,23 +150,23 @@ grammar ScientificNameDirty
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/
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super
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end
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-
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+
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rule left_paren
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"(" space "("
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/
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super
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end
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-
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+
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rule year
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a:year_number space b:approximate_year {
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def value
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a.value + " " + b.value
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end
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-
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+
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def pos
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a.pos.merge(b.pos)
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end
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-
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+
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def details
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{:year => a.value, :approximate_year => b.value}
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end
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@@ -176,11 +176,11 @@ grammar ScientificNameDirty
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def value
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a.text_value
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end
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-
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+
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def pos
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-
{a.interval.begin => [
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+
{a.interval.begin => ["year", a.interval.end]}
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end
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-
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+
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def details
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{:year => value}
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end
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@@ -194,40 +194,39 @@ grammar ScientificNameDirty
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/
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super
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end
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-
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+
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rule approximate_year
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"[" space a:year_number space "]"+ {
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def value
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"(" + a.text_value + ")"
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end
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-
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+
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def pos
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-
{a.interval.begin => [
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+
{a.interval.begin => ["year", a.interval.end]}
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end
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-
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+
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def details
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{:approximate_year => value}
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end
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}
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end
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-
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-
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+
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rule double_year
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year_number "-" [0-9]+ [A-Za-z]? [\?]? {
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def value
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text_value
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end
|
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-
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+
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def pos
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-
{interval.begin => [
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+
{interval.begin => ["year", interval.end]}
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end
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-
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+
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def details
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{:year => value}
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end
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}
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end
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-
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+
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rule year_number_with_punctuation
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a:year_number "." {
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def value
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@@ -235,7 +234,7 @@ grammar ScientificNameDirty
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end
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def pos
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-
{interval.begin => [
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+
{interval.begin => ["year", interval.end]}
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end
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def details
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@@ -244,7 +243,6 @@ grammar ScientificNameDirty
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}
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end
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-
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rule page_number
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":" space [\d]+
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{
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@@ -252,16 +250,15 @@ grammar ScientificNameDirty
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end
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}
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end
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-
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+
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rule string_authorship_inconsistencies
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("corrig.")
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end
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-
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rule garbage
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space (["',]) space [^щ]*
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/
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space_hard [^ш]+
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end
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-
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+
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end
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data/lib/biodiversity/version.rb
CHANGED
@@ -1,3 +1,3 @@
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1
1
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module Biodiversity
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2
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-
VERSION =
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3
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-
end
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2
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+
VERSION = "3.1.6"
|
3
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+
end
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data/spec/files/test_data.txt
CHANGED
@@ -132,6 +132,10 @@ Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003|{"sc
|
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Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett 1873)U. Braun & Crous , 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["year",48],"49":["author_word",51],"52":["author_word",57],"60":["author_word",65],"71":["year",75]}}}
|
133
133
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Sedella pumila (Benth.) Britton & Rose|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sedella pumila (Benth.) Britton & Rose", "normalized":"Sedella pumila (Benth.) Britton & Rose", "canonical":"Sedella pumila", "hybrid":false, "details":[{"genus":{"string":"Sedella"}, "species":{"string":"pumila", "authorship":"(Benth.) Britton & Rose", "combinationAuthorTeam":{"authorTeam":"Britton & Rose", "author":["Britton", "Rose"]}, "basionymAuthorTeam":{"authorTeam":"Benth.", "author":["Benth."]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 14], "16":["author_word", 22], "24":["author_word", 31], "34":["author_word", 38]}}}
|
134
134
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|
135
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+
#binomials with apostrophe in species epithet
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136
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+
Odynerus o'neili Cameron|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Odynerus o'neili Cameron", "normalized":"Odynerus oneili Cameron", "canonical":"Odynerus oneili", "hybrid":false, "details":[{"genus":{"string":"Odynerus"}, "species":{"string":"oneili", "authorship":"Cameron", "basionymAuthorTeam":{"authorTeam":"Cameron", "author":["Cameron"]}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 16], "17":["author_word", 24]}}}
|
137
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+
Serjania meridionalis Cambess. var. o'donelli F.A. Barkley|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Serjania meridionalis Cambess. var. o'donelli F.A. Barkley", "normalized":"Serjania meridionalis Cambess. var. odonelli F.A. Barkley", "canonical":"Serjania meridionalis odonelli", "hybrid":false, "details":[{"genus":{"string":"Serjania"}, "species":{"string":"meridionalis", "authorship":"Cambess.", "basionymAuthorTeam":{"authorTeam":"Cambess.", "author":["Cambess."]}}, "infraspecies":[{"string":"odonelli", "rank":"var.", "authorship":"F.A. Barkley", "basionymAuthorTeam":{"authorTeam":"F.A. Barkley", "author":["F.A. Barkley"]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 30], "31":["infraspecific_type", 35], "36":["infraspecies", 45], "46":["author_word", 50], "51":["author_word", 58]}}}
|
138
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+
|
135
139
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#infraspecies without rank
|
136
140
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Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "normalized":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "canonical":"Hydnellum scrobiculatum zonatum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"n/a", "authorship":"(Batsch) K. A. Harrison 1961", "combinationAuthorTeam":{"authorTeam":"K. A. Harrison", "author":["K. A. Harrison"], "year":"1961"}, "basionymAuthorTeam":{"authorTeam":"Batsch", "author":["Batsch"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecies", 31], "33":["author_word", 39], "41":["author_word", 43], "44":["author_word", 46], "47":["author_word", 55], "56":["year", 60]}}}
|
137
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Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31],"33":["author_word",39],"41":["author_word",43],"44":["author_word",48],"51":["author_word",55],"56":["author_word",62],"63":["year",67]}}}
|
@@ -160,6 +164,7 @@ Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.|{"scientificName":{"parsed"
|
|
160
164
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Armeria maaritima (Mill.) Willd. fma. originaria Bern.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "normalized":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "canonical":"Armeria maaritima originaria", "hybrid":false, "details":[{"genus":{"string":"Armeria"}, "species":{"string":"maaritima", "authorship":"(Mill.) Willd.", "combinationAuthorTeam":{"authorTeam":"Willd.", "author":["Willd."]}, "basionymAuthorTeam":{"authorTeam":"Mill.", "author":["Mill."]}}, "infraspecies":[{"string":"originaria", "rank":"fma.", "authorship":"Bern.", "basionymAuthorTeam":{"authorTeam":"Bern.", "author":["Bern."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 24], "26":["author_word", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 48], "49":["author_word", 54]}}}
|
161
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|
Cotoneaster (Pyracantha) rogersiana var.aurantiaca|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cotoneaster (Pyracantha) rogersiana var.aurantiaca", "normalized":"Cotoneaster (Pyracantha) rogersiana var. aurantiaca", "canonical":"Cotoneaster rogersiana aurantiaca", "hybrid":false, "details":[{"genus":{"string":"Cotoneaster"}, "infragenus":{"string":"Pyracantha"}, "species":{"string":"rogersiana"}, "infraspecies":[{"string":"aurantiaca", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 11], "13":["infragenus", 23], "25":["species", 35], "36":["infraspecific_type", 40], "40":["infraspecies", 50]}}}
|
162
166
|
Poa annua fo varia|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poa annua fo varia", "normalized":"Poa annua fo varia", "canonical":"Poa annua varia", "hybrid":false, "details":[{"genus":{"string":"Poa"}, "species":{"string":"annua"}, "infraspecies":[{"string":"varia", "rank":"fo"}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 9], "10":["infraspecific_type", 12], "13":["infraspecies", 18]}}}
|
167
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+
Physarum globuliferum forma. flavum Leontyev & Dudka|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Physarum globuliferum forma. flavum Leontyev & Dudka", "normalized":"Physarum globuliferum forma. flavum Leontyev & Dudka", "canonical":"Physarum globuliferum flavum", "hybrid":false, "details":[{"genus":{"string":"Physarum"}, "species":{"string":"globuliferum"}, "infraspecies":[{"string":"flavum", "rank":"forma.", "authorship":"Leontyev & Dudka", "basionymAuthorTeam":{"authorTeam":"Leontyev & Dudka", "author":["Leontyev", "Dudka"]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["infraspecific_type", 28], "29":["infraspecies", 35], "36":["author_word", 44], "47":["author_word", 52]}}}
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#TODO: Homalanthus nutans (Mull.Arg.) Benth. & Hook. f. ex Drake|{}
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#infraspecies_multiple
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@@ -289,7 +294,7 @@ Acarospora cratericola cratericola Shenk 1974 group|{"scientificName":{"parsed":
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Acarospora cratericola cratericola Shenk 1974 species group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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Acarospora cratericola cratericola Shenk 1974 species complex|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species complex", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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#
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#ignoring sensu sec
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Senecio legionensis sensu Samp., non Lange|{"scientificName":{"parsed":true, "verbatim":"Senecio legionensis sensu Samp., non Lange", "normalized":"Senecio legionensis", "canonical":"Senecio legionensis", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"legionensis"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 19]}}}
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Pseudomonas methanica (Söhngen 1906) sensu. Dworkin and Foster 1956|{"scientificName":{"parsed":true, "verbatim":"Pseudomonas methanica (Söhngen 1906) sensu. Dworkin and Foster 1956", "normalized":"Pseudomonas methanica (Söhngen 1906)", "canonical":"Pseudomonas methanica", "hybrid":false, "details":[{"genus":{"string":"Pseudomonas"}, "species":{"string":"methanica", "authorship":"(Söhngen 1906)", "basionymAuthorTeam":{"authorTeam":"Söhngen", "author":["Söhngen"], "year":"1906"}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 21], "23":["author_word", 30], "31":["year", 35]}}}
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Abarema scutifera sensu auct., non (Blanco)Kosterm.|{"scientificName":{"parsed":true, "verbatim":"Abarema scutifera sensu auct., non (Blanco)Kosterm.", "normalized":"Abarema scutifera", "canonical":"Abarema scutifera", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"scutifera"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17]}}}
|
@@ -1,30 +1,31 @@
|
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# encoding: UTF-8
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require_relative
|
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require_relative "../spec_helper"
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|
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describe ScientificNameCanonical do
|
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5
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before(:all) do
|
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set_parser(ScientificNameCanonicalParser.new)
|
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7
|
end
|
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it
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it "parses names with valid name part and unparseable rest" do
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[
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[
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[{:
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[
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:
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{0=>["genus", 5], 7=>["infragenus", 12]}],
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[
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:
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{0=>["genus", 5], 7=>["infragenus", 12], 14=>["species", 21]}],
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[
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[{:
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{0=>["genus", 6], 7=>["species", 17]} ],
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[
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[{:
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["Morea ssjjlajajaj324$33 234243242","Morea",
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[{ uninomial: { string: "Morea" }}], { 0 => ["uninomial", 5]}],
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["Morea (Morea) Burt 2342343242 23424322342 23424234",
|
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"Morea (Morea)", [{ genus: { string: "Morea" },
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infragenus: { string: "Morea" }}],
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{ 0 => ["genus", 5], 7 => ["infragenus", 12] }],
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["Morea (Morea) burtius 2342343242 23424322342 23424234",
|
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"Morea (Morea) burtius", [{ genus: { string: "Morea" },
|
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infragenus: { string: "Morea" },
|
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species: { string: "burtius" }}],
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{ 0 => ["genus", 5], 7 => ["infragenus", 12], 14 => ["species", 21] }],
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["Moraea spathulata ( (L. f. Klatt","Moraea spathulata",
|
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[{ genus: { string: "Moraea" }, species: { string: "spathulata"}}],
|
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{ 0 => ["genus", 6], 7 => ["species", 17] } ],
|
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["Verpericola megasoma \"Dall\" Pils.","Verpericola megasoma",
|
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[{ genus: { string: "Verpericola" },
|
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+
species: { string: "megasoma"}}],
|
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|
+
{ 0 => ["genus", 11], 12 => ["species", 20] }]
|
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|
].each do |n|
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|
expect(parse(n[0])).not_to be_nil
|
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expect(value(n[0])).to eq n[1]
|
@@ -32,6 +33,5 @@ describe ScientificNameCanonical do
|
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|
expect(pos(n[0])).to eq n[3]
|
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expect(parse(n[0]).hybrid).to be false
|
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|
end
|
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end
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end
|
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end
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@@ -1,5 +1,5 @@
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# encoding: UTF-8
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require_relative
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require_relative "../spec_helper"
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3
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describe ScientificNameClean do
|
@@ -7,51 +7,51 @@ describe ScientificNameClean do
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7
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set_parser(ScientificNameCleanParser.new)
|
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8
|
end
|
9
9
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|
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it
|
11
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sn =
|
10
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it "parses uninomial" do
|
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+
sn = "Pseudocercospora"
|
12
12
|
expect(parse(sn)).to_not be_nil
|
13
|
-
expect(value(sn)).to eq
|
14
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expect(canonical(sn)).to eq
|
15
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expect(details(sn)).to eq [{:
|
16
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-
expect(pos(sn)).to eq({
|
13
|
+
expect(value(sn)).to eq "Pseudocercospora"
|
14
|
+
expect(canonical(sn)).to eq "Pseudocercospora"
|
15
|
+
expect(details(sn)).to eq [{ uninomial: { string: "Pseudocercospora" } }]
|
16
|
+
expect(pos(sn)).to eq({ 0 => ["uninomial", 16] })
|
17
17
|
end
|
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-
|
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it
|
20
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-
sn =
|
18
|
+
|
19
|
+
it "parses uninomial with author and year" do
|
20
|
+
sn = "Pseudocercospora Speg."
|
21
21
|
expect(parse(sn)).to_not be_nil
|
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|
-
expect(details(sn)).to eq [{:
|
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|
-
{:
|
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|
-
:
|
25
|
-
:
|
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|
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{:
|
27
|
-
expect(pos(sn)).to eq({0=>["uninomial", 16], 17=>["author_word", 22]})
|
28
|
-
sn =
|
22
|
+
expect(details(sn)).to eq [{ uninomial:
|
23
|
+
{ string: "Pseudocercospora",
|
24
|
+
authorship: "Speg.",
|
25
|
+
basionymAuthorTeam:
|
26
|
+
{ authorTeam: "Speg.", author: ["Speg."] } } }]
|
27
|
+
expect(pos(sn)).to eq({ 0 => ["uninomial", 16], 17 => ["author_word", 22] })
|
28
|
+
sn = "Pseudocercospora Spegazzini, 1910"
|
29
29
|
expect(parse(sn)).to_not be_nil
|
30
|
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expect(value(sn)).to eq
|
31
|
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expect(details(sn)).to eq [{:
|
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|
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{:
|
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|
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:
|
34
|
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:
|
35
|
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{:
|
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|
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:
|
37
|
-
expect(pos(sn)).to eq({0=>["uninomial", 16],
|
38
|
-
17=>["author_word", 27], 29=>["year", 33]})
|
30
|
+
expect(value(sn)).to eq "Pseudocercospora Spegazzini 1910"
|
31
|
+
expect(details(sn)).to eq [{ uninomial:
|
32
|
+
{ string: "Pseudocercospora",
|
33
|
+
authorship: "Spegazzini, 1910",
|
34
|
+
basionymAuthorTeam:
|
35
|
+
{ authorTeam: "Spegazzini",
|
36
|
+
author: ["Spegazzini"], year: "1910" } } }]
|
37
|
+
expect(pos(sn)).to eq({ 0 => ["uninomial", 16],
|
38
|
+
17 => ["author_word", 27], 29 => ["year", 33] })
|
39
39
|
end
|
40
40
|
|
41
41
|
it "parses uninomials with uninomial ranks" do
|
42
42
|
sn = "Epacridaceae trib. Archerieae Crayn & Quinn"
|
43
43
|
expect(parse(sn)).to_not be_nil
|
44
|
-
expect(details(sn)).to eq [{:
|
45
|
-
{:
|
46
|
-
:
|
47
|
-
:uninomial2=>{:
|
48
|
-
:
|
49
|
-
:
|
50
|
-
{:
|
51
|
-
:
|
44
|
+
expect(details(sn)).to eq [{ uninomial:
|
45
|
+
{ string: "Epacridaceae" },
|
46
|
+
rank_uninomials: "trib.",
|
47
|
+
:uninomial2 => { string: "Archerieae",
|
48
|
+
authorship: "Crayn & Quinn",
|
49
|
+
basionymAuthorTeam:
|
50
|
+
{ authorTeam: "Crayn & Quinn",
|
51
|
+
author: ["Crayn", "Quinn"] } } }]
|
52
52
|
end
|
53
53
|
|
54
|
-
it
|
54
|
+
it "parses names with a valid 2 letter genus" do
|
55
55
|
["Ca Dyar 1914",
|
56
56
|
"Ea Distant 1911",
|
57
57
|
"Ge Nicéville 1895",
|
@@ -73,170 +73,170 @@ describe ScientificNameClean do
|
|
73
73
|
"Ba Solem 1983"].each do |name|
|
74
74
|
expect(parse(name)).to_not be_nil
|
75
75
|
end
|
76
|
-
expect(canonical(
|
76
|
+
expect(canonical("Quoyula")).to eq "Quoyula"
|
77
77
|
end
|
78
78
|
|
79
|
-
it
|
80
|
-
sn =
|
79
|
+
it "parses canonical" do
|
80
|
+
sn = "Pseudocercospora dendrobii"
|
81
81
|
expect(parse(sn)).to_not be_nil
|
82
|
-
expect(value(sn)).to eq
|
83
|
-
expect(canonical(sn)).to eq
|
84
|
-
expect(details(sn)).to eq [{:
|
85
|
-
{:
|
86
|
-
:
|
87
|
-
expect(pos(sn)).to eq({0=>["genus", 16], 21=>["species", 30]})
|
82
|
+
expect(value(sn)).to eq "Pseudocercospora dendrobii"
|
83
|
+
expect(canonical(sn)).to eq "Pseudocercospora dendrobii"
|
84
|
+
expect(details(sn)).to eq [{ genus:
|
85
|
+
{ string: "Pseudocercospora" },
|
86
|
+
species: { string: "dendrobii" } }]
|
87
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 16], 21 => ["species", 30] })
|
88
88
|
end
|
89
89
|
|
90
|
-
it
|
91
|
-
sn =
|
90
|
+
it "parses abbreviated canonical" do
|
91
|
+
sn = "P. dendrobii"
|
92
92
|
expect(parse(sn)).to_not be_nil
|
93
|
-
expect(value(sn)).to eq
|
94
|
-
sn =
|
93
|
+
expect(value(sn)).to eq "P. dendrobii"
|
94
|
+
sn = "Ps. dendrobii"
|
95
95
|
expect(parse(sn)).to_not be_nil
|
96
|
-
expect(value(sn)).to eq
|
97
|
-
expect(details(sn)).to eq [{:
|
98
|
-
{:
|
99
|
-
:
|
96
|
+
expect(value(sn)).to eq "Ps. dendrobii"
|
97
|
+
expect(details(sn)).to eq [{ genus:
|
98
|
+
{ string: "Ps." },
|
99
|
+
species: { string: "dendrobii" } }]
|
100
100
|
end
|
101
101
|
|
102
102
|
|
103
|
-
it
|
103
|
+
it "parses species name with author and year" do
|
104
104
|
sn = "Platypus bicaudatulus Schedl 1935"
|
105
105
|
expect(parse(sn)).to_not be_nil
|
106
106
|
expect(value(sn)).to eq "Platypus bicaudatulus Schedl 1935"
|
107
107
|
sn = "Platypus bicaudatulus Schedl, 1935h"
|
108
108
|
expect(parse(sn)).to_not be_nil
|
109
109
|
expect(value(sn)).to eq "Platypus bicaudatulus Schedl 1935"
|
110
|
-
expect(details(sn)).to eq [{:
|
111
|
-
{:
|
112
|
-
:
|
113
|
-
:
|
114
|
-
:
|
115
|
-
{:
|
116
|
-
:
|
117
|
-
expect(pos(sn)).to eq({0=>["genus", 8],
|
118
|
-
9=>["species", 21], 22=>["author_word", 28],
|
119
|
-
30=>["year", 35]})
|
110
|
+
expect(details(sn)).to eq [{ genus:
|
111
|
+
{ string: "Platypus" },
|
112
|
+
species: { string: "bicaudatulus",
|
113
|
+
authorship: "Schedl, 1935h",
|
114
|
+
basionymAuthorTeam:
|
115
|
+
{ authorTeam: "Schedl", author: ["Schedl"],
|
116
|
+
year: "1935" } } }]
|
117
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 8],
|
118
|
+
9 => ["species", 21], 22 => ["author_word", 28],
|
119
|
+
30 => ["year", 35] })
|
120
120
|
expect(parse("Platypus bicaudatulus Schedl, 1935B")).to_not be_nil
|
121
121
|
sn = "Platypus bicaudatulus Schedl (1935h)"
|
122
122
|
expect(parse(sn)).to_not be_nil
|
123
|
-
expect(details(sn)).to eq [{:
|
124
|
-
:
|
125
|
-
:
|
126
|
-
:
|
123
|
+
expect(details(sn)).to eq [{ genus: { string: "Platypus" },
|
124
|
+
species: { string: "bicaudatulus", authorship: "Schedl (1935h)",
|
125
|
+
basionymAuthorTeam: { authorTeam: "Schedl", author: ["Schedl"],
|
126
|
+
year: "1935" } } }]
|
127
127
|
expect(parse("Platypus bicaudatulus Schedl 1935")).to_not be_nil
|
128
128
|
end
|
129
129
|
|
130
|
-
it
|
130
|
+
it "parses species name with abbreviated genus, author and year" do
|
131
131
|
sn = "P. bicaudatulus Schedl 1935"
|
132
132
|
expect(parse(sn)).to_not be_nil
|
133
133
|
expect(value(sn)).to eq "P. bicaudatulus Schedl 1935"
|
134
134
|
sn = "Pl. bicaudatulus Schedl, 1935h"
|
135
135
|
expect(parse(sn)).not_to be_nil
|
136
136
|
expect(value(sn)).to eq "Pl. bicaudatulus Schedl 1935"
|
137
|
-
expect(details(sn)).to eq [{:
|
138
|
-
:
|
139
|
-
:
|
140
|
-
:
|
137
|
+
expect(details(sn)).to eq [{ genus: { string: "Pl." },
|
138
|
+
species: { string: "bicaudatulus", authorship: "Schedl, 1935h",
|
139
|
+
basionymAuthorTeam: { authorTeam: "Schedl",
|
140
|
+
author: ["Schedl"], year: "1935" } } }]
|
141
141
|
sn = "Pla. bicaudatulus Schedl, 1935h"
|
142
142
|
expect(parse(sn)).to_not be_nil
|
143
143
|
expect(value(sn)).to eq "Pla. bicaudatulus Schedl 1935"
|
144
144
|
end
|
145
145
|
|
146
|
-
it "parses species name with author's postfix f., filius (son of)" do
|
146
|
+
it "parses species name with author\'s postfix f., filius (son of)" do
|
147
147
|
names = [
|
148
|
-
[
|
149
|
-
:
|
150
|
-
:
|
151
|
-
:
|
152
|
-
|
153
|
-
["Platypus bicaudatulus Schedl filius 1935",
|
154
|
-
[{:
|
155
|
-
:
|
156
|
-
:
|
157
|
-
:
|
158
|
-
:
|
159
|
-
|
160
|
-
[
|
161
|
-
[{:
|
162
|
-
:
|
163
|
-
:
|
164
|
-
:
|
165
|
-
:
|
166
|
-
:
|
167
|
-
[
|
168
|
-
[{:
|
169
|
-
:
|
170
|
-
:
|
171
|
-
:
|
172
|
-
:
|
173
|
-
[
|
174
|
-
[{:
|
175
|
-
:
|
176
|
-
:
|
177
|
-
:
|
178
|
-
:
|
179
|
-
:
|
180
|
-
|
181
|
-
[
|
182
|
-
[{:
|
183
|
-
:
|
184
|
-
:
|
185
|
-
:
|
186
|
-
:
|
187
|
-
|
188
|
-
[
|
189
|
-
[{:
|
190
|
-
:
|
191
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-
:
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-
:
|
193
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-
|
194
|
-
[
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195
|
-
[{:
|
196
|
-
:
|
197
|
-
{:
|
198
|
-
:
|
199
|
-
:
|
200
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-
:
|
201
|
-
:
|
148
|
+
["Platypus bicaudatulus Schedl f. 1935", [{ genus: { string: "Platypus" },
|
149
|
+
species: { string: "bicaudatulus", authorship: "Schedl f. 1935",
|
150
|
+
basionymAuthorTeam: { authorTeam: "Schedl f.",
|
151
|
+
author: ["Schedl f."], year: "1935" } } }],
|
152
|
+
"Platypus bicaudatulus Schedl f. 1935"],
|
153
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+
["Platypus bicaudatulus Schedl filius 1935",
|
154
|
+
[{ genus: { string: "Platypus" },
|
155
|
+
species: { string: "bicaudatulus",
|
156
|
+
authorship: "Schedl filius 1935",
|
157
|
+
basionymAuthorTeam: { authorTeam: "Schedl filius",
|
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+
author: ["Schedl filius"], year: "1935" } } }],
|
159
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+
"Platypus bicaudatulus Schedl filius 1935"],
|
160
|
+
["Fimbristylis ovata (Burm. f.) J. Kern",
|
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+
[{ genus: { string: "Fimbristylis" }, species: { string: "ovata",
|
162
|
+
authorship: "(Burm. f.) J. Kern",
|
163
|
+
combinationAuthorTeam: { authorTeam: "J. Kern",
|
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|
+
author: ["J. Kern"] },
|
165
|
+
basionymAuthorTeam: { authorTeam: "Burm. f.",
|
166
|
+
author: ["Burm. f."] } } }], "Fimbristylis ovata (Burm. f.) J. Kern"],
|
167
|
+
["Carex chordorrhiza Ehrh. ex L. f.",
|
168
|
+
[{ genus: { string: "Carex" }, species: { string: "chordorrhiza",
|
169
|
+
authorship: "Ehrh. ex L. f.",
|
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|
+
basionymAuthorTeam: { authorTeam: "Ehrh.",
|
171
|
+
author: ["Ehrh."], exAuthorTeam: { authorTeam: "L. f.",
|
172
|
+
author: ["L. f."] } } } }], "Carex chordorrhiza Ehrh. ex L. f."],
|
173
|
+
["Amelanchier arborea var. arborea (Michx. f.) Fernald",
|
174
|
+
[{ genus: { string: "Amelanchier" }, species: { string: "arborea"},
|
175
|
+
infraspecies: [{ string: "arborea", rank: "var.",
|
176
|
+
authorship: "(Michx. f.) Fernald", combinationAuthorTeam: {
|
177
|
+
authorTeam: "Fernald", author: ["Fernald"] },
|
178
|
+
basionymAuthorTeam: { authorTeam: "Michx. f.",
|
179
|
+
author: ["Michx. f."] } }]}],
|
180
|
+
"Amelanchier arborea var. arborea (Michx. f.) Fernald"],
|
181
|
+
["Cerastium arvense var. fuegianum Hook. f.",
|
182
|
+
[{ genus: { string: "Cerastium" }, species: { string: "arvense"},
|
183
|
+
infraspecies: [{ string: "fuegianum", rank: "var.",
|
184
|
+
authorship: "Hook. f.",
|
185
|
+
basionymAuthorTeam: { authorTeam: "Hook. f.",
|
186
|
+
author: ["Hook. f."] } }]}],
|
187
|
+
"Cerastium arvense var. fuegianum Hook. f."],
|
188
|
+
["Cerastium arvense var. fuegianum Hook.f.",
|
189
|
+
[{ genus: { string: "Cerastium" }, species: { string: "arvense"},
|
190
|
+
infraspecies: [{ string: "fuegianum", rank: "var.",
|
191
|
+
authorship: "Hook.f.", basionymAuthorTeam: {
|
192
|
+
authorTeam: "Hook.f.", author: ["Hook.f."] } }]}],
|
193
|
+
"Cerastium arvense var. fuegianum Hook.f."],
|
194
|
+
["Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.",
|
195
|
+
[{ genus: { string: "Cerastium" }, species: { string: "arvense"},
|
196
|
+
infraspecies: [{ string: "velutinum", rank: "ssp." },
|
197
|
+
{ string: "velutinum", rank: "var.",
|
198
|
+
authorship: "(Raf.) Britton f.",
|
199
|
+
combinationAuthorTeam: { authorTeam: "Britton f.",
|
200
|
+
author: ["Britton f."] }, basionymAuthorTeam: { authorTeam: "Raf.",
|
201
|
+
author: ["Raf."] } }]}],
|
202
202
|
"Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f."],
|
203
|
-
["Amelanchier arborea f. hirsuta (Michx. f.) Fernald",
|
204
|
-
[{:
|
205
|
-
:
|
206
|
-
:
|
207
|
-
:
|
208
|
-
:
|
203
|
+
["Amelanchier arborea f. hirsuta (Michx. f.) Fernald",
|
204
|
+
[{ infraspecies: [{ basionymAuthorTeam: { author: ["Michx. f."],
|
205
|
+
authorTeam: "Michx. f." }, string: "hirsuta", rank: "f.",
|
206
|
+
combinationAuthorTeam: { author: ["Fernald"], authorTeam: "Fernald" },
|
207
|
+
authorship: "(Michx. f.) Fernald" }], genus: { string: "Amelanchier"},
|
208
|
+
species: { string: "arborea" } }],
|
209
209
|
"Amelanchier arborea f. hirsuta (Michx. f.) Fernald"],
|
210
|
-
["Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.",
|
211
|
-
[{:
|
212
|
-
:
|
213
|
-
:
|
214
|
-
:
|
215
|
-
:
|
210
|
+
["Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.",
|
211
|
+
[{ infraspecies: [{ basionymAuthorTeam: { author: ["L. f."],
|
212
|
+
authorTeam: "L. f." }, string: "dalecarlica", rank: "fo.",
|
213
|
+
combinationAuthorTeam: { author: ["C.K. Schneid."],
|
214
|
+
authorTeam: "C.K. Schneid." }, authorship: "(L. f.) C.K. Schneid."}],
|
215
|
+
genus: { string: "Betula" }, species: { string: "pendula"} }],
|
216
216
|
"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid."],
|
217
|
-
["Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.",
|
218
|
-
[{:
|
219
|
-
:
|
220
|
-
:
|
221
|
-
:
|
222
|
-
:
|
223
|
-
:
|
224
|
-
:
|
217
|
+
["Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.",
|
218
|
+
[{ genus: { string: "Racomitrium" }, species: { string: "canescens"},
|
219
|
+
infraspecies: [{ string: "ericoides", rank: "f.",
|
220
|
+
authorship: "(F. Weber ex Brid.) Mönk.",
|
221
|
+
combinationAuthorTeam: { authorTeam: "Mönk.", author: ["Mönk."] },
|
222
|
+
basionymAuthorTeam: { authorTeam: "F. Weber",
|
223
|
+
author: ["F. Weber"], exAuthorTeam: { authorTeam: "Brid.",
|
224
|
+
author: ["Brid."] } } }]}],
|
225
225
|
"Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk."],
|
226
|
-
["Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.",
|
227
|
-
[{:
|
228
|
-
:
|
229
|
-
:
|
230
|
-
:
|
231
|
-
:
|
232
|
-
:
|
226
|
+
["Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.",
|
227
|
+
[{ genus: { string: "Racomitrium" }, species: { string: "canescens"},
|
228
|
+
infraspecies: [{ string: "ericoides", rank: "forma",
|
229
|
+
authorship: "(F. Weber ex Brid.) Mönk.",
|
230
|
+
combinationAuthorTeam: { authorTeam: "Mönk.", author: ["Mönk."] },
|
231
|
+
basionymAuthorTeam: { authorTeam: "F. Weber", author: ["F. Weber"],
|
232
|
+
exAuthorTeam: { authorTeam: "Brid.", author: ["Brid."] } } }]}],
|
233
233
|
"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk."],
|
234
|
-
["Peristernia nassatula forskali Tapparone-Canefri 1875",
|
235
|
-
[{:
|
236
|
-
:
|
237
|
-
:
|
238
|
-
:
|
239
|
-
:
|
234
|
+
["Peristernia nassatula forskali Tapparone-Canefri 1875",
|
235
|
+
[{ genus: { string: "Peristernia" }, species: { string: "nassatula"},
|
236
|
+
infraspecies: [{ string: "forskali", rank: "n/a",
|
237
|
+
authorship: "Tapparone-Canefri 1875", basionymAuthorTeam: {
|
238
|
+
authorTeam: "Tapparone-Canefri", author: ["Tapparone-Canefri"],
|
239
|
+
year: "1875" } }]}],
|
240
240
|
"Peristernia nassatula forskali Tapparone-Canefri 1875"],
|
241
241
|
]
|
242
242
|
names.each do |sn, sn_details, sn_value|
|
@@ -246,27 +246,27 @@ describe ScientificNameClean do
|
|
246
246
|
end
|
247
247
|
end
|
248
248
|
|
249
|
-
it
|
249
|
+
it "parses genus with '?'" do
|
250
250
|
sn = "Ferganoconcha? oblonga"
|
251
251
|
expect(parse(sn)).to_not be_nil
|
252
252
|
expect(value(sn)).to eq "Ferganoconcha oblonga"
|
253
|
-
expect(details(sn)).to eq [{:
|
254
|
-
:
|
255
|
-
expect(pos(sn)).to eq({0=>["genus", 14], 15=>["species", 22]})
|
253
|
+
expect(details(sn)).to eq [{ genus: { string: "Ferganoconcha" },
|
254
|
+
species: { string: "oblonga" } }]
|
255
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 14], 15 => ["species", 22] })
|
256
256
|
end
|
257
257
|
|
258
|
-
it
|
258
|
+
it "parses æ in the name" do
|
259
259
|
names = [
|
260
260
|
["Læptura laetifica Dow, 1913", "Laeptura laetifica Dow 1913"],
|
261
261
|
["Leptura lætifica Dow, 1913", "Leptura laetifica Dow 1913"],
|
262
262
|
["Leptura leætifica Dow, 1913", "Leptura leaetifica Dow 1913"],
|
263
263
|
["Leæptura laetifica Dow, 1913", "Leaeptura laetifica Dow 1913"],
|
264
264
|
["Leœptura laetifica Dow, 1913", "Leoeptura laetifica Dow 1913"],
|
265
|
-
[
|
266
|
-
[
|
267
|
-
[
|
268
|
-
[
|
269
|
-
[
|
265
|
+
["Ærenea cognata Lacordaire, 1872", "Aerenea cognata Lacordaire 1872"],
|
266
|
+
["Œdicnemus capensis", "Oedicnemus capensis"],
|
267
|
+
["Œnanthæ œnanthe","Oenanthae oenanthe"],
|
268
|
+
["Œnanthe œnanthe","Oenanthe oenanthe"],
|
269
|
+
["Cerambyx thomæ Gmelin J. F., 1790", "Cerambyx thomae Gmelin J. F. 1790"]
|
270
270
|
]
|
271
271
|
names.each do |name_pair|
|
272
272
|
expect(parse(name_pair[0])).to_not be_nil
|
@@ -274,64 +274,64 @@ describe ScientificNameClean do
|
|
274
274
|
end
|
275
275
|
end
|
276
276
|
|
277
|
-
it
|
278
|
-
sn =
|
279
|
-
expect(canonical(sn)).to eq
|
280
|
-
sn =
|
281
|
-
expect(canonical(sn)).to eq
|
277
|
+
it "parses names with e-umlaut" do
|
278
|
+
sn = "Kalanchoë tuberosa"
|
279
|
+
expect(canonical(sn)).to eq "Kalanchoe tuberosa"
|
280
|
+
sn = "Isoëtes asplundii H. P. Fuchs"
|
281
|
+
expect(canonical(sn)).to eq "Isoetes asplundii"
|
282
282
|
end
|
283
283
|
|
284
|
-
it
|
284
|
+
it "parses infragenus (ICZN code)" do
|
285
285
|
sn = "Hegeter (Hegeter) intercedens Lindberg H 1950"
|
286
286
|
expect(parse(sn)).to_not be_nil
|
287
287
|
expect(value(sn)).to eq "Hegeter (Hegeter) intercedens Lindberg H 1950"
|
288
288
|
expect(canonical(sn)).to eq "Hegeter intercedens"
|
289
|
-
expect(details(sn)).to eq [{:
|
290
|
-
:
|
291
|
-
:
|
292
|
-
:
|
293
|
-
:
|
294
|
-
expect(pos(sn)).to eq({0=>["genus", 7], 9=>["infragenus", 16],
|
295
|
-
18=>["species", 29], 30=>["author_word", 38],
|
296
|
-
39=>["author_word", 40], 41=>["year", 45]})
|
289
|
+
expect(details(sn)).to eq [{ genus: { string: "Hegeter" },
|
290
|
+
infragenus: { string: "Hegeter" }, species: { string: "intercedens",
|
291
|
+
authorship: "Lindberg H 1950",
|
292
|
+
basionymAuthorTeam: { authorTeam: "Lindberg H",
|
293
|
+
author: ["Lindberg H"], year: "1950" } } }]
|
294
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 7], 9 => ["infragenus", 16],
|
295
|
+
18 => ["species", 29], 30 => ["author_word", 38],
|
296
|
+
39 => ["author_word", 40], 41 => ["year", 45] })
|
297
297
|
sn = "Ixodes (Ixodes) hexagonus hexagonus Neumann, 1911"
|
298
298
|
expect(canonical(sn)).to eq "Ixodes hexagonus hexagonus"
|
299
299
|
sn = "Brachytrypus (B.) grandidieri"
|
300
300
|
expect(canonical(sn)).to eq "Brachytrypus grandidieri"
|
301
|
-
expect(details(sn)).to eq [{:
|
302
|
-
:
|
301
|
+
expect(details(sn)).to eq [{ genus: { string: "Brachytrypus" },
|
302
|
+
infragenus: { string: "B." }, species: { string: "grandidieri"} }]
|
303
303
|
sn = "Empis (Argyrandrus) Bezzi 1909"
|
304
|
-
expect(details(sn)).to eq [{:
|
305
|
-
:
|
306
|
-
:
|
307
|
-
:
|
304
|
+
expect(details(sn)).to eq [{ uninomial: { string: "Empis",
|
305
|
+
infragenus: { string: "Argyrandrus" }, authorship: "Bezzi 1909",
|
306
|
+
basionymAuthorTeam: { authorTeam: "Bezzi",
|
307
|
+
author: ["Bezzi"], year: "1909" } } }]
|
308
308
|
sn = "Platydoris (Bergh )"
|
309
|
-
expect(details(sn)).to eq [{:
|
310
|
-
:
|
309
|
+
expect(details(sn)).to eq [{ uninomial: { string: "Platydoris",
|
310
|
+
infragenus: { string: "Bergh" } } }]
|
311
311
|
expect(value(sn)).to eq "Platydoris (Bergh)"
|
312
312
|
sn = "Platydoris (B.)"
|
313
|
-
expect(details(sn)).to eq [{:
|
314
|
-
:
|
313
|
+
expect(details(sn)).to eq [{ uninomial: { string: "Platydoris",
|
314
|
+
infragenus: { string: "B." } } }]
|
315
315
|
end
|
316
316
|
|
317
|
-
it
|
317
|
+
it "parses several authors without a year" do
|
318
318
|
sn = "Pseudocercospora dendrobii U. Braun & Crous"
|
319
319
|
expect(parse(sn)).to_not be be_nil
|
320
320
|
expect(value(sn)).to eq "Pseudocercospora dendrobii U. Braun & Crous"
|
321
321
|
expect(canonical(sn)).to eq "Pseudocercospora dendrobii"
|
322
|
-
expect(details(sn)).to eq [{:
|
323
|
-
:
|
324
|
-
:
|
325
|
-
:
|
326
|
-
expect(pos(sn)).to eq({0=>["genus", 16], 17=>["species", 26],
|
327
|
-
27=>["author_word", 29], 30=>["author_word", 35],
|
328
|
-
38=>["author_word", 43]})
|
322
|
+
expect(details(sn)).to eq [{ genus: { string: "Pseudocercospora" },
|
323
|
+
species: { string: "dendrobii", authorship: "U. Braun & Crous",
|
324
|
+
basionymAuthorTeam: { authorTeam: "U. Braun & Crous",
|
325
|
+
author: ["U. Braun", "Crous"] } } }]
|
326
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 16], 17 => ["species", 26],
|
327
|
+
27 => ["author_word", 29], 30 => ["author_word", 35],
|
328
|
+
38 => ["author_word", 43] })
|
329
329
|
sn = "Pseudocercospora dendrobii U. Braun and Crous"
|
330
330
|
expect(parse(sn)).to_not be_nil
|
331
331
|
expect(value(sn)).to eq "Pseudocercospora dendrobii U. Braun & Crous"
|
332
|
-
expect(pos(sn)).to eq({0=>["genus", 16], 17=>["species", 26],
|
333
|
-
27=>["author_word", 29], 30=>["author_word", 35],
|
334
|
-
40=>["author_word", 45]})
|
332
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 16], 17 => ["species", 26],
|
333
|
+
27 => ["author_word", 29], 30 => ["author_word", 35],
|
334
|
+
40 => ["author_word", 45] })
|
335
335
|
sn = "Pseudocercospora dendrobii U. Braun et Crous"
|
336
336
|
expect(parse(sn)).to_not be_nil
|
337
337
|
expect(value(sn)).to eq "Pseudocercospora dendrobii U. Braun & Crous"
|
@@ -339,139 +339,140 @@ describe ScientificNameClean do
|
|
339
339
|
expect(parse(sn)).to_not be_nil
|
340
340
|
expect(value(sn)).to eq "Arthopyrenia hyalospora (Nyl.) R.C. Harris"
|
341
341
|
expect(canonical(sn)).to eq "Arthopyrenia hyalospora"
|
342
|
-
expect(details(sn)).to eq [{:
|
343
|
-
:
|
344
|
-
:
|
345
|
-
:
|
346
|
-
:
|
342
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
343
|
+
species: { string: "hyalospora", authorship: "(Nyl.)R.C. Harris",
|
344
|
+
combinationAuthorTeam: { authorTeam: "R.C. Harris",
|
345
|
+
author: ["R.C. Harris"] },
|
346
|
+
basionymAuthorTeam: { authorTeam: "Nyl.", author: ["Nyl."] } } }]
|
347
347
|
end
|
348
348
|
|
349
|
-
it
|
349
|
+
it "parses several authors with a year" do
|
350
350
|
sn = "Pseudocercospora dendrobii U. Braun & Crous 2003"
|
351
351
|
expect(parse(sn)).to_not be_nil
|
352
352
|
expect(value(sn)).to eq "Pseudocercospora dendrobii U. Braun & Crous 2003"
|
353
353
|
expect(canonical(sn)).to eq "Pseudocercospora dendrobii"
|
354
|
-
expect(details(sn)).to eq [{:
|
355
|
-
:
|
356
|
-
:
|
357
|
-
:
|
358
|
-
expect(pos(sn)).to eq({0=>["genus", 16], 17=>["species", 26],
|
359
|
-
27=>["author_word", 29], 30=>["author_word", 35],
|
360
|
-
38=>["author_word", 43], 44=>["year", 48]})
|
354
|
+
expect(details(sn)).to eq [{ genus: { string: "Pseudocercospora" },
|
355
|
+
species: { string: "dendrobii", authorship: "U. Braun & Crous 2003",
|
356
|
+
basionymAuthorTeam: { authorTeam: "U. Braun & Crous",
|
357
|
+
author: ["U. Braun", "Crous"], year: "2003" } } }]
|
358
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 16], 17 => ["species", 26],
|
359
|
+
27 => ["author_word", 29], 30 => ["author_word", 35],
|
360
|
+
38 => ["author_word", 43], 44 => ["year", 48] })
|
361
361
|
sn = "Pseudocercospora dendrobii Crous, 2003"
|
362
362
|
expect(parse(sn)).to_not be_nil
|
363
363
|
end
|
364
364
|
|
365
|
-
it
|
365
|
+
it "parses basionym authors in parenthesis" do
|
366
366
|
sn = "Zophosis persis (Chatanay, 1914)"
|
367
367
|
expect(parse(sn)).to_not be_nil
|
368
|
-
expect(details(sn)).to eq [{:
|
369
|
-
:
|
370
|
-
:
|
371
|
-
:
|
368
|
+
expect(details(sn)).to eq [{ genus: { string: "Zophosis" },
|
369
|
+
species: { string: "persis", authorship: "(Chatanay, 1914)",
|
370
|
+
basionymAuthorTeam: { authorTeam: "Chatanay",
|
371
|
+
author: ["Chatanay"], year: "1914" } } }]
|
372
372
|
sn = "Zophosis persis (Chatanay 1914)"
|
373
373
|
expect(parse(sn)).to_not be_nil
|
374
|
-
expect(details(sn)).to eq [{:
|
375
|
-
:
|
376
|
-
:
|
377
|
-
:
|
374
|
+
expect(details(sn)).to eq [{ genus: { string: "Zophosis" },
|
375
|
+
species: { string: "persis", authorship: "(Chatanay 1914)",
|
376
|
+
basionymAuthorTeam: { authorTeam: "Chatanay",
|
377
|
+
author: ["Chatanay"], year: "1914" } } }]
|
378
378
|
sn = "Zophosis persis (Chatanay), 1914"
|
379
379
|
expect(parse(sn)).to_not be_nil
|
380
380
|
expect(value(sn)).to eq "Zophosis persis (Chatanay 1914)"
|
381
|
-
expect(details(sn)).to eq [{:
|
382
|
-
:
|
383
|
-
:
|
384
|
-
:
|
385
|
-
expect(pos(sn)).to eq({0=>["genus", 8], 9=>["species", 15],
|
386
|
-
17=>["author_word", 25], 28=>["year", 32]})
|
381
|
+
expect(details(sn)).to eq [{ genus: { string: "Zophosis" },
|
382
|
+
species: { string: "persis", authorship: "(Chatanay), 1914",
|
383
|
+
basionymAuthorTeam: { author_team: "(Chatanay), 1914",
|
384
|
+
author: ["Chatanay"], year: "1914" } } }]
|
385
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 8], 9 => ["species", 15],
|
386
|
+
17 => ["author_word", 25], 28 => ["year", 32] })
|
387
387
|
expect(parse("Zophosis persis (Chatanay) 1914")).to_not be_nil
|
388
388
|
#parse("Zophosis persis Chatanay (1914)")).to_not be_nil
|
389
389
|
end
|
390
390
|
|
391
391
|
it "parses name with identificaation annotation -- aff cf sp spp" do
|
392
|
-
sn =
|
393
|
-
expect(details(sn)).to eq [{:
|
394
|
-
:
|
395
|
-
:
|
396
|
-
:
|
397
|
-
:
|
398
|
-
sn =
|
399
|
-
expect(details(sn)).to eq [{:
|
400
|
-
:
|
401
|
-
{:
|
402
|
-
:
|
403
|
-
:
|
404
|
-
sn =
|
405
|
-
expect(details(sn)).to eq [{:
|
406
|
-
:
|
407
|
-
:
|
408
|
-
:
|
409
|
-
sn =
|
410
|
-
expect(details(sn)).to eq [{:
|
411
|
-
:
|
412
|
-
{:
|
413
|
-
:
|
414
|
-
:
|
415
|
-
sn =
|
416
|
-
expect(details(sn)).to eq [{:
|
417
|
-
:
|
418
|
-
{:
|
419
|
-
:
|
420
|
-
:
|
421
|
-
sn =
|
422
|
-
expect(details(sn)).to eq [{:
|
423
|
-
:
|
392
|
+
sn = "Diplocephalus aff. procerus Thaler, 1972"
|
393
|
+
expect(details(sn)).to eq [{ genus: { string: "Diplocephalus" },
|
394
|
+
annotation_identification: "aff.",
|
395
|
+
ignored: { species: { string: "procerus", authorship: "Thaler, 1972",
|
396
|
+
basionymAuthorTeam: { authorTeam: "Thaler",
|
397
|
+
author: ["Thaler"], year: "1972" } } } }]
|
398
|
+
sn = "Diplocephalus aff procerus Thaler, 1972"
|
399
|
+
expect(details(sn)).to eq [{ genus: { string: "Diplocephalus" },
|
400
|
+
annotation_identification: "aff", ignored: { species:
|
401
|
+
{ string: "procerus", authorship: "Thaler, 1972",
|
402
|
+
basionymAuthorTeam: { authorTeam: "Thaler",
|
403
|
+
author: ["Thaler"], year: "1972" } } } }]
|
404
|
+
sn = "Diplocephalus affprocerus Thaler, 1972"
|
405
|
+
expect(details(sn)).to eq [{ genus: { string: "Diplocephalus" },
|
406
|
+
species: { string: "affprocerus", authorship: "Thaler, 1972",
|
407
|
+
basionymAuthorTeam: { authorTeam: "Thaler",
|
408
|
+
author: ["Thaler"], year: "1972" } } }]
|
409
|
+
sn = "Diplocephalus cf. procerus Thaler, 1972"
|
410
|
+
expect(details(sn)).to eq [{ genus: { string: "Diplocephalus" },
|
411
|
+
annotation_identification: "cf.", species: { species:
|
412
|
+
{ string: "procerus", authorship: "Thaler, 1972",
|
413
|
+
basionymAuthorTeam: { authorTeam: "Thaler",
|
414
|
+
author: ["Thaler"], year: "1972" } } } }]
|
415
|
+
sn = "Diplocephalus cf procerus Thaler, 1972"
|
416
|
+
expect(details(sn)).to eq [{ genus: { string: "Diplocephalus" },
|
417
|
+
annotation_identification: "cf", species:
|
418
|
+
{ species: { string: "procerus", authorship: "Thaler, 1972",
|
419
|
+
basionymAuthorTeam: { authorTeam: "Thaler",
|
420
|
+
author: ["Thaler"], year: "1972" } } } }]
|
421
|
+
sn = "Sphingomonas sp. 37"
|
422
|
+
expect(details(sn)).to eq [{ genus: { string: "Sphingomonas" },
|
423
|
+
annotation_identification: "sp.", ignored: { unparsed: "37" } }]
|
424
424
|
sn = "Thryothorus leucotis spp. bogotensis"
|
425
|
-
expect(details(sn)).to eq [{:
|
426
|
-
:
|
427
|
-
[{:
|
428
|
-
:
|
425
|
+
expect(details(sn)).to eq [{ genus: { string: "Thryothorus" },
|
426
|
+
species: { string: "leucotis" }, infraspecies:
|
427
|
+
[{ annotation_identification: "spp.",
|
428
|
+
ignored: { infraspecies: { string: "bogotensis", rank: "n/a" } } }]}]
|
429
429
|
end
|
430
430
|
|
431
|
-
it
|
431
|
+
it "parses scientific name" do
|
432
432
|
sn = "Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003"
|
433
433
|
expect(parse(sn)).to_not be_nil
|
434
434
|
expect(value(sn)).to eq "Pseudocercospora dendrobii (H.C. Burnett) "\
|
435
435
|
"U. Braun & Crous 2003"
|
436
436
|
expect(canonical(sn)).to eq "Pseudocercospora dendrobii"
|
437
|
-
expect(details(sn)).to eq [{:
|
438
|
-
:
|
439
|
-
:
|
440
|
-
:
|
441
|
-
:
|
442
|
-
:
|
443
|
-
:
|
437
|
+
expect(details(sn)).to eq [{ genus: { string: "Pseudocercospora" },
|
438
|
+
species: { string: "dendrobii",
|
439
|
+
authorship: "(H.C. Burnett)U. Braun & Crous 2003",
|
440
|
+
combinationAuthorTeam: { authorTeam: "U. Braun & Crous",
|
441
|
+
author: ["U. Braun", "Crous"], year: "2003" },
|
442
|
+
basionymAuthorTeam: { authorTeam: "H.C. Burnett",
|
443
|
+
author: ["H.C. Burnett"] } } }]
|
444
444
|
sn = "Pseudocercospora dendrobii(H.C. Burnett,1873)"\
|
445
445
|
"U. Braun & Crous 2003"
|
446
446
|
expect(parse(sn)).to_not be_nil
|
447
447
|
expect(value(sn)).to eq "Pseudocercospora dendrobii (H.C. Burnett 1873) "\
|
448
448
|
"U. Braun & Crous 2003"
|
449
|
-
expect(details(sn)).to eq [{:
|
450
|
-
:
|
451
|
-
:
|
452
|
-
:
|
453
|
-
:
|
454
|
-
:
|
455
|
-
:
|
449
|
+
expect(details(sn)).to eq [{ genus: { string: "Pseudocercospora" },
|
450
|
+
species: { string: "dendrobii",
|
451
|
+
authorship: "(H.C. Burnett,1873)U. Braun & Crous 2003",
|
452
|
+
combinationAuthorTeam: { authorTeam: "U. Braun & Crous",
|
453
|
+
author: ["U. Braun", "Crous"], year: "2003" },
|
454
|
+
basionymAuthorTeam: { authorTeam: "H.C. Burnett",
|
455
|
+
author: ["H.C. Burnett"], year: "1873" } } }]
|
456
456
|
end
|
457
457
|
|
458
|
-
it
|
458
|
+
it "parses several authors with several years" do
|
459
459
|
sn = "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun & Crous 2003"
|
460
460
|
expect(parse(sn)).to_not be_nil
|
461
461
|
expect(value(sn)).to eq "Pseudocercospora dendrobii (H.C. Burnett 1883) "\
|
462
462
|
"U. Braun & Crous 2003"
|
463
463
|
expect(canonical(sn)).to eq "Pseudocercospora dendrobii"
|
464
|
-
expect(details(sn)).to eq [{:
|
465
|
-
:
|
466
|
-
:
|
467
|
-
:
|
468
|
-
:
|
469
|
-
:
|
470
|
-
:
|
471
|
-
expect(pos(sn)).to eq({0=>["genus", 16], 17=>["species", 26],
|
472
|
-
28=>["author_word", 32], 33=>["author_word", 40],
|
473
|
-
41=>["year", 45], 47=>["author_word", 49],
|
474
|
-
50=>["author_word", 55], 58=>["author_word", 63],
|
464
|
+
expect(details(sn)).to eq [{ genus: { string: "Pseudocercospora" },
|
465
|
+
species: { string: "dendrobii",
|
466
|
+
authorship: "(H.C. Burnett 1883) U. Braun & Crous 2003",
|
467
|
+
combinationAuthorTeam: { authorTeam: "U. Braun & Crous",
|
468
|
+
author: ["U. Braun", "Crous"], year: "2003" },
|
469
|
+
basionymAuthorTeam: { authorTeam: "H.C. Burnett",
|
470
|
+
author: ["H.C. Burnett"], year: "1883" } } }]
|
471
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 16], 17 => ["species", 26],
|
472
|
+
28 => ["author_word", 32], 33 => ["author_word", 40],
|
473
|
+
41 => ["year", 45], 47 => ["author_word", 49],
|
474
|
+
50 => ["author_word", 55], 58 => ["author_word", 63],
|
475
|
+
64 => ["year", 68] })
|
475
476
|
end
|
476
477
|
|
477
478
|
it "parses name with subspecies without rank Zoological Code" do
|
@@ -480,57 +481,59 @@ describe ScientificNameClean do
|
|
480
481
|
expect(value(sn)).to eq "Hydnellum scrobiculatum zonatum (Banker) "\
|
481
482
|
"D. Hall & D.E. Stuntz 1972"
|
482
483
|
expect(canonical(sn)).to eq "Hydnellum scrobiculatum zonatum"
|
483
|
-
expect(details(sn)).to eq [{:
|
484
|
-
:
|
485
|
-
:
|
486
|
-
:
|
487
|
-
:
|
488
|
-
:
|
489
|
-
:
|
490
|
-
expect(pos(sn)).to eq({0=>["genus", 9], 10=>["species", 23],
|
491
|
-
24=>["infraspecies", 31], 33=>["author_word", 39],
|
492
|
-
41=>["author_word", 43], 44=>["author_word", 48],
|
493
|
-
51=>["author_word", 55], 56=>["author_word", 62],
|
484
|
+
expect(details(sn)).to eq [{ genus: { string: "Hydnellum" },
|
485
|
+
species: { string: "scrobiculatum" },
|
486
|
+
infraspecies: [{ string: "zonatum", rank: "n/a",
|
487
|
+
authorship: "(Banker) D. Hall & D.E. Stuntz 1972",
|
488
|
+
combinationAuthorTeam: { authorTeam: "D. Hall & D.E. Stuntz",
|
489
|
+
author: ["D. Hall", "D.E. Stuntz"], year: "1972" },
|
490
|
+
basionymAuthorTeam: { authorTeam: "Banker", author: ["Banker"] } }]}]
|
491
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 9], 10 => ["species", 23],
|
492
|
+
24 => ["infraspecies", 31], 33 => ["author_word", 39],
|
493
|
+
41 => ["author_word", 43], 44 => ["author_word", 48],
|
494
|
+
51 => ["author_word", 55], 56 => ["author_word", 62],
|
495
|
+
63 => ["year", 67] })
|
494
496
|
sn = "Begonia pingbienensis angustior"
|
495
497
|
expect(parse(sn)).to_not be_nil
|
496
|
-
expect(details(sn)).to eq [{:
|
497
|
-
:
|
498
|
-
:
|
499
|
-
expect(pos(sn)).to eq({0=>["genus", 7],
|
500
|
-
8=>["species", 21], 22=>["infraspecies", 31]})
|
498
|
+
expect(details(sn)).to eq [{ genus: { string: "Begonia" },
|
499
|
+
species: { string: "pingbienensis" },
|
500
|
+
infraspecies: [{ string: "angustior", rank: "n/a" }]}]
|
501
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 7],
|
502
|
+
8 => ["species", 21], 22 => ["infraspecies", 31] })
|
501
503
|
end
|
502
504
|
|
503
|
-
it
|
505
|
+
it "parses infraspecies with rank" do
|
504
506
|
sn = "Aus bus Linn. var. bus"
|
505
507
|
expect(parse(sn)).to_not be_nil
|
506
|
-
expect(details(sn)).to eq [{:
|
507
|
-
:
|
508
|
-
:
|
509
|
-
:
|
508
|
+
expect(details(sn)).to eq [{ genus: { string: "Aus" },
|
509
|
+
species: { string: "bus", authorship: "Linn.",
|
510
|
+
basionymAuthorTeam: { authorTeam: "Linn.",
|
511
|
+
author: ["Linn."] } }, infraspecies: [{ string: "bus", rank: "var."}]}]
|
510
512
|
sn = "Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987"
|
511
513
|
expect(parse(sn)).to_not be_nil
|
512
|
-
expect(details(sn)).to eq [{:
|
513
|
-
:
|
514
|
-
:
|
515
|
-
:
|
516
|
-
:
|
517
|
-
:
|
518
|
-
:
|
519
|
-
:
|
520
|
-
:
|
521
|
-
expect(pos(sn)).to eq({0=>["genus", 8], 9=>["species", 17],
|
522
|
-
19=>["author_word", 21], 23=>["author_word", 29],
|
523
|
-
30=>["infraspecific_type", 34], 35=>["infraspecies", 43],
|
524
|
-
45=>["author_word", 50], 52=>["author_word", 60],
|
514
|
+
expect(details(sn)).to eq [{ genus: { string: "Agalinis" },
|
515
|
+
species: { string: "purpurea", authorship: "(L.) Briton",
|
516
|
+
combinationAuthorTeam: { authorTeam: "Briton", author: ["Briton"] },
|
517
|
+
basionymAuthorTeam: { authorTeam: "L.",
|
518
|
+
author: ["L."] } }, infraspecies: [{ string: "borealis",
|
519
|
+
rank: "var.", authorship: "(Berg.) Peterson 1987",
|
520
|
+
combinationAuthorTeam: { authorTeam: "Peterson",
|
521
|
+
author: ["Peterson"], year: "1987" },
|
522
|
+
basionymAuthorTeam: { authorTeam: "Berg.", author: ["Berg."] } }]}]
|
523
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 8], 9 => ["species", 17],
|
524
|
+
19 => ["author_word", 21], 23 => ["author_word", 29],
|
525
|
+
30 => ["infraspecific_type", 34], 35 => ["infraspecies", 43],
|
526
|
+
45 => ["author_word", 50], 52 => ["author_word", 60],
|
527
|
+
61 => ["year", 65] })
|
525
528
|
sn = "Phaeographis inusta var. macularis(Leight.) A.L. Sm. 1861"
|
526
529
|
expect(parse(sn)).to_not be_nil
|
527
530
|
expect(value(sn)).to eq "Phaeographis inusta var. macularis (Leight.) "\
|
528
531
|
"A.L. Sm. 1861"
|
529
532
|
expect(canonical(sn)).to eq "Phaeographis inusta macularis"
|
530
|
-
expect(pos(sn)).to eq({0=>["genus", 12], 13=>["species", 19],
|
531
|
-
20=>["infraspecific_type", 24], 25=>["infraspecies", 34],
|
532
|
-
35=>["author_word", 42], 44=>["author_word", 48],
|
533
|
-
49=>["author_word", 52], 53=>["year", 57]})
|
533
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 19],
|
534
|
+
20 => ["infraspecific_type", 24], 25 => ["infraspecies", 34],
|
535
|
+
35 => ["author_word", 42], 44 => ["author_word", 48],
|
536
|
+
49 => ["author_word", 52], 53 => ["year", 57] })
|
534
537
|
sn = "Cassytha peninsularis J. Z. Weber var. flindersii"
|
535
538
|
expect(canonical(sn)).to eq "Cassytha peninsularis flindersii"
|
536
539
|
sn = "Prunus armeniaca convar. budae (Pénzes) Soó"
|
@@ -553,60 +556,79 @@ describe ScientificNameClean do
|
|
553
556
|
expect(canonical(sn)).to eq "Polypodium pectinatum thisisjunk"
|
554
557
|
end
|
555
558
|
|
556
|
-
it
|
559
|
+
it "parsex unknown original authors (auct.)/(hort.)/(?)" do
|
557
560
|
sn = "Tragacantha leporina (?) Kuntze"
|
558
561
|
expect(parse(sn)).to_not be_nil
|
559
562
|
expect(value(sn)).to eq "Tragacantha leporina (?) Kuntze"
|
560
|
-
expect(details(sn)).to eq [{:
|
561
|
-
:
|
562
|
-
:
|
563
|
-
:
|
563
|
+
expect(details(sn)).to eq [{ genus: { string: "Tragacantha" },
|
564
|
+
species: { string: "leporina", authorship: "(?) Kuntze",
|
565
|
+
combinationAuthorTeam: { authorTeam: "Kuntze", author: ["Kuntze"] },
|
566
|
+
basionymAuthorTeam: { authorTeam: "(?)", author: ["?"] } } }]
|
564
567
|
sn = "Lachenalia tricolor var. nelsonii (auct.) Baker"
|
565
568
|
expect(parse(sn)).to_not be_nil
|
566
569
|
expect(value(sn)).to eq "Lachenalia tricolor var. nelsonii (auct.) Baker"
|
567
|
-
expect(details(sn)).to eq [{:
|
568
|
-
:
|
569
|
-
:
|
570
|
-
:
|
571
|
-
:
|
572
|
-
{:
|
573
|
-
expect(pos(sn)).to eq({0=>["genus", 10], 11=>["species", 19],
|
574
|
-
20=>["infraspecific_type", 24], 25=>["infraspecies", 33],
|
575
|
-
35=>["unknown_author", 40], 42=>["author_word", 47]})
|
576
|
-
end
|
577
|
-
|
578
|
-
it
|
570
|
+
expect(details(sn)).to eq [{ genus: { string: "Lachenalia" },
|
571
|
+
species: { string: "tricolor" }, infraspecies: [{ string: "nelsonii",
|
572
|
+
rank: "var.", authorship: "(auct.) Baker",
|
573
|
+
combinationAuthorTeam: { authorTeam: "Baker",
|
574
|
+
author: ["Baker"] }, basionymAuthorTeam:
|
575
|
+
{ authorTeam: "auct.", author: ["unknown"] } }]}]
|
576
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 10], 11 => ["species", 19],
|
577
|
+
20 => ["infraspecific_type", 24], 25 => ["infraspecies", 33],
|
578
|
+
35 => ["unknown_author", 40], 42 => ["author_word", 47] })
|
579
|
+
end
|
580
|
+
|
581
|
+
it "parses unknown authors auct./anon./hort./ht." do
|
579
582
|
sn = "Puya acris ht."
|
580
583
|
expect(parse(sn)).to_not be_nil
|
581
|
-
expect(pos(sn)).to eq({0=>["genus", 4], 5=>["species", 10],
|
582
|
-
11=>["unknown_author", 14]})
|
584
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 4], 5 => ["species", 10],
|
585
|
+
11 => ["unknown_author", 14] })
|
583
586
|
end
|
584
587
|
|
585
|
-
it
|
588
|
+
it "parses normal names with hort or anon in them" do
|
586
589
|
sn = "Mus musculus hortulanus"
|
587
590
|
expect(parse(sn)).to_not be_nil
|
588
|
-
expect(pos(sn)).to eq({0=>["genus", 3], 4=>["species", 12],
|
589
|
-
13=>["infraspecies", 23]})
|
591
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 3], 4 => ["species", 12],
|
592
|
+
13 => ["infraspecies", 23] })
|
590
593
|
end
|
591
594
|
|
592
|
-
it
|
595
|
+
it "parses real world examples" do
|
593
596
|
sn = "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
|
594
597
|
expect(parse(sn)).to_not be_nil
|
595
|
-
expect(value(sn)).
|
596
|
-
|
597
|
-
expect(
|
598
|
-
|
599
|
-
|
598
|
+
expect(value(sn)).
|
599
|
+
to eq "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
|
600
|
+
expect(details(sn)).to eq [{ genus: { string: "Stagonospora" },
|
601
|
+
species: { string: "polyspora",
|
602
|
+
authorship: "M.T. Lucas & Sousa da Câmara 1934", basionymAuthorTeam:
|
603
|
+
{ authorTeam: "M.T. Lucas & Sousa da Câmara",
|
604
|
+
author: ["M.T. Lucas", "Sousa da Câmara"], year: "1934"} } }]
|
605
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 22],
|
606
|
+
23 => ["author_word", 27], 28 => ["author_word", 33],
|
607
|
+
36 => ["author_word", 41], 42 => ["author_word", 44],
|
608
|
+
45 => ["author_word", 51], 52 => ["year", 56] })
|
609
|
+
expect(parse("Cladoniicola staurospora Diederich, "\
|
610
|
+
"van den Boom & Aptroot 2001")).to_not be_nil
|
611
|
+
sn = "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) "\
|
612
|
+
"Van der Walt & Arx 1981"
|
600
613
|
expect(parse(sn)).to_not be_nil
|
601
|
-
expect(value(sn)).to eq "Yarrowia lipolytica var. lipolytica
|
602
|
-
|
614
|
+
expect(value(sn)).to eq "Yarrowia lipolytica var. lipolytica "\
|
615
|
+
"(Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981"
|
616
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 8], 9 => ["species", 19],
|
617
|
+
20 => ["infraspecific_type", 24], 25 => ["infraspecies", 35],
|
618
|
+
37 => ["author_word", 42], 44 => ["author_word", 52],
|
619
|
+
55 => ["author_word", 59], 60 => ["author_word", 66],
|
620
|
+
68 => ["author_word", 71], 72 => ["author_word", 75],
|
621
|
+
76 => ["author_word", 80], 83 => ["author_word", 86],
|
622
|
+
87 => ["year", 91] })
|
603
623
|
expect(parse("Physalospora rubiginosa (Fr.) anon.")).to_not be_nil
|
604
624
|
expect(parse("Pleurotus ëous (Berk.) Sacc. 1887")).to_not be_nil
|
605
625
|
expect(parse("Lecanora wetmorei Śliwa 2004")).to_not be_nil
|
606
626
|
# valid
|
607
627
|
# infraspecific
|
608
|
-
expect(parse("Calicium furfuraceum * furfuraceum (L.) Pers. 1797")).
|
609
|
-
|
628
|
+
expect(parse("Calicium furfuraceum * furfuraceum (L.) Pers. 1797")).
|
629
|
+
to_not be_nil
|
630
|
+
expect(parse("Exobasidium vaccinii ** andromedae (P. Karst.) "\
|
631
|
+
"P. Karst. 1882")).to_not be_nil
|
610
632
|
expect(parse("Urceolaria scruposa **** clausa Flot. 1849")).to_not be_nil
|
611
633
|
expect(parse("Cortinarius angulatus B gracilescens Fr. 1838")).to_not be_nil
|
612
634
|
expect(parse("Cyathicula scelobelonium")).to_not be_nil
|
@@ -616,44 +638,61 @@ describe ScientificNameClean do
|
|
616
638
|
# author is exception
|
617
639
|
sn = "Tuber liui A S. Xu 1999"
|
618
640
|
expect(parse(sn)).to_not be_nil
|
619
|
-
expect(details(sn)).to eq [{
|
620
|
-
|
641
|
+
expect(details(sn)).to eq [{ genus: { string: "Tuber" },
|
642
|
+
species: { string: "liui", authorship: "A S. Xu 1999",
|
643
|
+
basionymAuthorTeam: { authorTeam: "A S. Xu",
|
644
|
+
author: ["A S. Xu"], year: "1999"} } }]
|
645
|
+
expect(parse("Xylaria potentillae A S. Xu")).to_not be_nil
|
621
646
|
expect(parse("Agaricus squamula Berk. & M.A. Curtis 1860")).to_not be_nil
|
622
|
-
expect(parse("Peltula coriacea Büdel, Henssen & Wessels 1986")).
|
647
|
+
expect(parse("Peltula coriacea Büdel, Henssen & Wessels 1986")).
|
648
|
+
to_not be_nil
|
623
649
|
#had to add no dot rule for trinomials without a rank to make it to work
|
624
650
|
sn = "Saccharomyces drosophilae anon."
|
625
651
|
expect(parse(sn)).to_not be_nil
|
626
|
-
expect(details(sn)).to eq [{
|
627
|
-
|
652
|
+
expect(details(sn)).to eq [{ genus: { string: "Saccharomyces" },
|
653
|
+
species: { string: "drosophilae", authorship: "anon.",
|
654
|
+
basionymAuthorTeam: { authorTeam: "anon.", author: ["unknown"]} } }]
|
655
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 13],
|
656
|
+
14 => ["species", 25],
|
657
|
+
26 => ["unknown_author", 31] })
|
628
658
|
sn = "Abacetus laevicollis de Chaudoir, 1869"
|
629
659
|
expect(parse(sn)).to_not be_nil
|
630
|
-
expect(canonical(sn)).to eq
|
660
|
+
expect(canonical(sn)).to eq "Abacetus laevicollis"
|
631
661
|
sn = "Gastrosericus eremorum van Beaumont 1955"
|
632
|
-
expect(canonical(sn)).to eq
|
662
|
+
expect(canonical(sn)).to eq "Gastrosericus eremorum"
|
633
663
|
sn = "Gastrosericus eremorum von Beaumont 1955"
|
634
|
-
expect(canonical(sn)).to eq
|
664
|
+
expect(canonical(sn)).to eq "Gastrosericus eremorum"
|
635
665
|
sn = "Cypraeovula (Luponia) amphithales perdentata"
|
636
|
-
expect(canonical(sn)).to eq
|
637
|
-
expect(details(sn)).to eq [{
|
666
|
+
expect(canonical(sn)).to eq "Cypraeovula amphithales perdentata"
|
667
|
+
expect(details(sn)).to eq [{ genus: { string: "Cypraeovula" },
|
668
|
+
infragenus: { string: "Luponia"}, species: { string: "amphithales"},
|
669
|
+
infraspecies: [{ string: "perdentata", rank: "n/a"}]}]
|
638
670
|
sn = "Polyrhachis orsyllus nat musculus Forel 1901"
|
639
671
|
expect(canonical(sn)).to eq "Polyrhachis orsyllus musculus"
|
640
|
-
sn =
|
641
|
-
expect(canonical(sn)).to eq
|
642
|
-
expect(value(sn)).to eq
|
643
|
-
sn =
|
644
|
-
expect(canonical(sn)).to eq
|
645
|
-
expect(value(sn)).to eq
|
646
|
-
sn =
|
647
|
-
expect(canonical(sn)).to eq
|
672
|
+
sn = "Latrodectus 13-guttatus Thorell, 1875"
|
673
|
+
expect(canonical(sn)).to eq "Latrodectus tredecguttatus"
|
674
|
+
expect(value(sn)).to eq "Latrodectus tredecguttatus Thorell 1875"
|
675
|
+
sn = "Latrodectus 3-guttatus Thorell, 1875"
|
676
|
+
expect(canonical(sn)).to eq "Latrodectus triguttatus"
|
677
|
+
expect(value(sn)).to eq "Latrodectus triguttatus Thorell 1875"
|
678
|
+
sn = "Balaninus c-album Schönherr, CJ., 1836"
|
679
|
+
expect(canonical(sn)).to eq "Balaninus c-album"
|
648
680
|
end
|
649
681
|
|
650
682
|
it "parses name with morph." do
|
651
683
|
sn = "Callideriphus flavicollis morph. reductus Fuchs 1961"
|
652
684
|
expect(parse(sn)).to_not be_nil
|
653
|
-
expect(value(sn)).
|
685
|
+
expect(value(sn)).
|
686
|
+
to eq "Callideriphus flavicollis morph. reductus Fuchs 1961"
|
654
687
|
expect(canonical(sn)).to eq "Callideriphus flavicollis reductus"
|
655
|
-
expect(details(sn)).to eq [{
|
656
|
-
|
688
|
+
expect(details(sn)).to eq [{ genus: { string: "Callideriphus" },
|
689
|
+
species: { string: "flavicollis"}, infraspecies: [{ string: "reductus",
|
690
|
+
rank: "morph.", authorship: "Fuchs 1961", basionymAuthorTeam:
|
691
|
+
{ authorTeam: "Fuchs", author: ["Fuchs"], year: "1961"} }]}]
|
692
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 13], 14 => ["species", 25],
|
693
|
+
26 => ["infraspecific_type", 32],
|
694
|
+
33 => ["infraspecies", 41],
|
695
|
+
42 => ["author_word", 47], 48 => ["year", 52] })
|
657
696
|
end
|
658
697
|
|
659
698
|
|
@@ -662,38 +701,90 @@ describe ScientificNameClean do
|
|
662
701
|
expect(parse(sn)).to_not be_nil
|
663
702
|
expect(value(sn)).to eq "Caulerpa cupressoides forma nuda"
|
664
703
|
expect(canonical(sn)).to eq "Caulerpa cupressoides nuda"
|
665
|
-
expect(details(sn)).to eq [{
|
666
|
-
|
704
|
+
expect(details(sn)).to eq [{ genus: { string: "Caulerpa" },
|
705
|
+
species: { string: "cupressoides"},
|
706
|
+
infraspecies: [{ string: "nuda", rank: "forma"}]}]
|
707
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 8], 9 => ["species", 21],
|
708
|
+
22 => ["infraspecific_type", 27],
|
709
|
+
28 => ["infraspecies", 32] })
|
667
710
|
sn = "Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó"
|
668
711
|
expect(parse(sn)).to_not be_nil
|
669
|
-
expect(value("Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó")).
|
712
|
+
expect(value("Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó")).
|
713
|
+
to eq "Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó"
|
670
714
|
expect(canonical(sn)).to eq "Chlorocyperus glaber fasciculariforme"
|
671
|
-
expect(details(sn)).to eq [{
|
672
|
-
|
673
|
-
|
715
|
+
expect(details(sn)).to eq [{ genus: { string: "Chlorocyperus" },
|
716
|
+
species: { string: "glaber"}, infraspecies:
|
717
|
+
[{ string: "fasciculariforme", rank: "form.",
|
718
|
+
authorship: "(Lojac.) Soó", combinationAuthorTeam: { authorTeam: "Soó",
|
719
|
+
author: ["Soó"]}, basionymAuthorTeam: { authorTeam: "Lojac.",
|
720
|
+
author: ["Lojac."]} }]}]
|
721
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 13], 14 => ["species", 20],
|
722
|
+
21 => ["infraspecific_type", 26],
|
723
|
+
27 => ["infraspecies", 43],
|
724
|
+
45 => ["author_word", 51],
|
725
|
+
53 => ["author_word", 56] })
|
726
|
+
sn = "Bambusa nana Roxb. fo. alphonse-karri (Mitford ex Satow) "\
|
727
|
+
"Makino ex Shiros."
|
674
728
|
expect(parse(sn)).to_not be_nil
|
675
|
-
expect(value(sn)).to eq "Bambusa nana Roxb. fo. alphonse-karri
|
729
|
+
expect(value(sn)).to eq "Bambusa nana Roxb. fo. alphonse-karri "\
|
730
|
+
"(Mitford ex Satow) Makino ex Shiros."
|
676
731
|
expect(canonical(sn)).to eq "Bambusa nana alphonse-karri"
|
677
|
-
expect(details(sn)).to eq [{
|
678
|
-
|
732
|
+
expect(details(sn)).to eq [{ genus: { string: "Bambusa" },
|
733
|
+
species: { string: "nana", authorship: "Roxb.", basionymAuthorTeam:
|
734
|
+
{ authorTeam: "Roxb.", author: ["Roxb."]} },
|
735
|
+
infraspecies: [{ string: "alphonse-karri",
|
736
|
+
rank: "fo.", authorship: "(Mitford ex Satow) Makino ex Shiros.",
|
737
|
+
combinationAuthorTeam: { authorTeam: "Makino",
|
738
|
+
author: ["Makino"], exAuthorTeam: { authorTeam: "Shiros.",
|
739
|
+
author: ["Shiros."]} }, basionymAuthorTeam: { authorTeam: "Mitford",
|
740
|
+
author: ["Mitford"], exAuthorTeam: { authorTeam: "Satow",
|
741
|
+
author: ["Satow"]} } }]}]
|
742
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 7], 8 => ["species", 12],
|
743
|
+
13 => ["author_word", 18], 19 => ["infraspecific_type", 22],
|
744
|
+
23 => ["infraspecies", 37], 39 => ["author_word", 46],
|
745
|
+
50 => ["author_word", 55], 57 => ["author_word", 63],
|
746
|
+
67 => ["author_word", 74] })
|
679
747
|
sn = " Sphaerotheca fuliginea f. dahliae Movss. 1967 "
|
680
748
|
sn = "Sphaerotheca fuliginea f. dahliae Movss. 1967"
|
681
749
|
expect(parse(sn)).to_not be_nil
|
682
750
|
expect(value(sn)).to eq "Sphaerotheca fuliginea f. dahliae Movss. 1967"
|
683
751
|
expect(canonical(sn)).to eq "Sphaerotheca fuliginea dahliae"
|
684
|
-
expect(details(sn)).to eq [{
|
685
|
-
|
686
|
-
|
752
|
+
expect(details(sn)).to eq [{ genus: { string: "Sphaerotheca" },
|
753
|
+
species: { string: "fuliginea"}, infraspecies:
|
754
|
+
[{ string: "dahliae", rank: "f.", authorship: "Movss. 1967",
|
755
|
+
basionymAuthorTeam: { authorTeam: "Movss.",
|
756
|
+
author: ["Movss."], year: "1967"} }]}]
|
757
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 16 => ["species", 25],
|
758
|
+
29 => ["infraspecific_type", 31], 36 => ["infraspecies", 43],
|
759
|
+
47 => ["author_word", 53], 58 => ["year", 62] })
|
760
|
+
expect(parse("Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay")).
|
761
|
+
to_not be_nil
|
687
762
|
end
|
688
763
|
|
689
|
-
it "parses name with several subspecies names
|
690
|
-
|
764
|
+
it "parses name with several subspecies names" do
|
765
|
+
# NOT BOTANICAL CODE BUT NOT INFREQUENT"
|
766
|
+
sn = "Hydnellum scrobiculatum var. zonatum f. "\
|
767
|
+
"parvum (Banker) D. Hall & D.E. Stuntz 1972"
|
691
768
|
expect(parse(sn)).to_not be_nil
|
692
|
-
expect(value(sn)).to eq "Hydnellum scrobiculatum var. zonatum f.
|
693
|
-
|
694
|
-
expect(
|
695
|
-
|
696
|
-
|
769
|
+
expect(value(sn)).to eq "Hydnellum scrobiculatum var. zonatum f. "\
|
770
|
+
"parvum (Banker) D. Hall & D.E. Stuntz 1972"
|
771
|
+
expect(details(sn)).to eq [{ genus: { string: "Hydnellum" }, species:
|
772
|
+
{ string: "scrobiculatum"}, infraspecies: [{ string: "zonatum",
|
773
|
+
rank: "var."}, { string: "parvum", rank: "f.",
|
774
|
+
authorship: "(Banker) D. Hall & D.E. Stuntz 1972",
|
775
|
+
combinationAuthorTeam: { authorTeam: "D. Hall & D.E. Stuntz",
|
776
|
+
author: ["D. Hall", "D.E. Stuntz"], year: "1972"},
|
777
|
+
basionymAuthorTeam: { authorTeam: "Banker", author: ["Banker"]} }]}]
|
778
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 9], 10 => ["species", 23],
|
779
|
+
24 => ["infraspecific_type", 28], 29 => ["infraspecies", 36],
|
780
|
+
37 => ["infraspecific_type", 39], 40 => ["infraspecies", 46],
|
781
|
+
48 => ["author_word", 54], 56 => ["author_word", 58],
|
782
|
+
59 => ["author_word", 63], 66 => ["author_word", 70],
|
783
|
+
71 => ["author_word", 77], 78 => ["year", 82] })
|
784
|
+
expect(parse("Senecio fuchsii C.C.Gmel. subsp. fuchsii var. "\
|
785
|
+
"expansus (Boiss. & Heldr.) Hayek")).to_not be_nil
|
786
|
+
expect(parse("Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii")).
|
787
|
+
to_not be_nil
|
697
788
|
end
|
698
789
|
|
699
790
|
|
@@ -701,64 +792,139 @@ describe ScientificNameClean do
|
|
701
792
|
#it is always latin abbrev often 2 words
|
702
793
|
sn = "Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov."
|
703
794
|
expect(parse(sn)).to_not be_nil
|
704
|
-
expect(value(sn)).to eq "Arthopyrenia hyalospora (Nyl.)
|
795
|
+
expect(value(sn)).to eq "Arthopyrenia hyalospora (Nyl.) "\
|
796
|
+
"R.C. Harris comb. nov."
|
705
797
|
expect(canonical(sn)).to eq "Arthopyrenia hyalospora"
|
706
|
-
expect(details(sn)).to eq [{
|
707
|
-
|
798
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
799
|
+
species: { string: "hyalospora", authorship: "(Nyl.) R.C. Harris",
|
800
|
+
combinationAuthorTeam: { authorTeam: "R.C. Harris",
|
801
|
+
author: ["R.C. Harris"]}, basionymAuthorTeam: { authorTeam: "Nyl.",
|
802
|
+
author: ["Nyl."]} }, status: "comb. nov."}]
|
803
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 23],
|
804
|
+
25 => ["author_word", 29], 31 => ["author_word", 35],
|
805
|
+
36 => ["author_word", 42] })
|
708
806
|
end
|
709
807
|
|
710
808
|
it "parses revised (ex) names" do
|
711
809
|
#invalidly published
|
712
810
|
sn = "Arthopyrenia hyalospora (Nyl. ex Banker) R.C. Harris"
|
713
811
|
expect(parse(sn)).to_not be_nil
|
714
|
-
expect(value(sn)).
|
812
|
+
expect(value(sn)).
|
813
|
+
to eq "Arthopyrenia hyalospora (Nyl. ex Banker) R.C. Harris"
|
715
814
|
expect(canonical(sn)).to eq "Arthopyrenia hyalospora"
|
716
|
-
expect(details(sn)).to eq [{
|
717
|
-
|
815
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
816
|
+
species: { string: "hyalospora",
|
817
|
+
authorship: "(Nyl. ex Banker) R.C. Harris", combinationAuthorTeam:
|
818
|
+
{ authorTeam: "R.C. Harris", author: ["R.C. Harris"]},
|
819
|
+
basionymAuthorTeam: { authorTeam: "Nyl.", author: ["Nyl."],
|
820
|
+
exAuthorTeam: { authorTeam: "Banker", author: ["Banker"]} } } }]
|
821
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 23],
|
822
|
+
25 => ["author_word", 29], 33 => ["author_word", 39],
|
823
|
+
41 => ["author_word", 45], 46 => ["author_word", 52] })
|
718
824
|
sn = "Arthopyrenia hyalospora Nyl. ex Banker"
|
719
825
|
expect(parse(sn)).to_not be_nil
|
720
|
-
expect(details(sn)).to eq [{
|
826
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
827
|
+
species: { string: "hyalospora", authorship: "Nyl. ex Banker",
|
828
|
+
basionymAuthorTeam: { authorTeam: "Nyl.", author: ["Nyl."],
|
829
|
+
exAuthorTeam: { authorTeam: "Banker", author: ["Banker"]} } } }]
|
721
830
|
sn = "Glomopsis lonicerae Peck ex C.J. Gould 1945"
|
722
831
|
expect(parse(sn)).to_not be_nil
|
723
|
-
expect(details(sn)).to eq [{
|
724
|
-
|
725
|
-
|
832
|
+
expect(details(sn)).to eq [{ genus: { string: "Glomopsis" },
|
833
|
+
species: { string: "lonicerae", authorship: "Peck ex C.J. Gould 1945",
|
834
|
+
basionymAuthorTeam: { authorTeam: "Peck", author: ["Peck"],
|
835
|
+
exAuthorTeam: { authorTeam: "C.J. Gould", author: ["C.J. Gould"],
|
836
|
+
year: "1945"} } } }]
|
837
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 9], 10 => ["species", 19],
|
838
|
+
20 => ["author_word", 24], 28 => ["author_word", 32],
|
839
|
+
33 => ["author_word", 38], 39 => ["year", 43] })
|
840
|
+
expect(parse("Acanthobasidium delicatum (Wakef.) Oberw. ex Jülich 1979")).
|
841
|
+
to_not be_nil
|
726
842
|
sn = "Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897"
|
727
843
|
expect(parse(sn)).to_not be_nil
|
728
|
-
expect(details(sn)).to eq [{
|
729
|
-
|
844
|
+
expect(details(sn)).to eq [{ genus: { string: "Mycosphaerella" },
|
845
|
+
species: { string: "eryngii",
|
846
|
+
authorship: "(Fr. ex Duby) Johanson ex Oudem. 1897",
|
847
|
+
combinationAuthorTeam: { authorTeam: "Johanson", author: ["Johanson"],
|
848
|
+
exAuthorTeam: { authorTeam: "Oudem.", author: ["Oudem."], year: "1897"} },
|
849
|
+
basionymAuthorTeam: { authorTeam: "Fr.", author: ["Fr."],
|
850
|
+
exAuthorTeam: { authorTeam: "Duby", author: ["Duby"]} } } }]
|
851
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 14], 15 => ["species", 22],
|
852
|
+
24 => ["author_word", 27], 31 => ["author_word", 35],
|
853
|
+
37 => ["author_word", 45], 49 => ["author_word", 55],
|
854
|
+
56 => ["year", 60] })
|
730
855
|
#invalid but happens
|
731
|
-
expect(parse("Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897")).
|
732
|
-
|
733
|
-
|
856
|
+
expect(parse("Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897")).
|
857
|
+
to_not be_nil
|
858
|
+
expect(parse("Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897")).
|
859
|
+
to_not be_nil
|
860
|
+
sn = "Salmonella werahensis (Castellani) Hauduroy and Ehringer "\
|
861
|
+
"in Hauduroy 1937"
|
734
862
|
expect(parse(sn)).to_not be_nil
|
735
|
-
expect(details(sn)).to eq [{
|
736
|
-
|
863
|
+
expect(details(sn)).to eq [{ genus: { string: "Salmonella" },
|
864
|
+
species: { string: "werahensis",
|
865
|
+
authorship: "(Castellani) Hauduroy and Ehringer in Hauduroy 1937",
|
866
|
+
combinationAuthorTeam: { authorTeam: "Hauduroy and Ehringer",
|
867
|
+
author: ["Hauduroy", "Ehringer"], exAuthorTeam: {
|
868
|
+
authorTeam: "Hauduroy", author: ["Hauduroy"], year: "1937"} },
|
869
|
+
basionymAuthorTeam: { authorTeam: "Castellani",
|
870
|
+
author: ["Castellani"]} } }]
|
871
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 10], 11 => ["species", 21],
|
872
|
+
23 => ["author_word", 33], 35 => ["author_word", 43],
|
873
|
+
48 => ["author_word", 56], 60 => ["author_word", 68],
|
874
|
+
69 => ["year", 73] })
|
737
875
|
end
|
738
876
|
|
739
|
-
it
|
877
|
+
it "parses named hybrids" do
|
740
878
|
[
|
741
|
-
["×Agropogon P. Fourn. 1934", [{
|
742
|
-
|
743
|
-
|
744
|
-
["
|
745
|
-
|
746
|
-
|
747
|
-
["
|
748
|
-
|
749
|
-
|
750
|
-
["
|
751
|
-
["
|
879
|
+
["×Agropogon P. Fourn. 1934", [{ uninomial: { string: "Agropogon",
|
880
|
+
authorship: "P. Fourn. 1934", basionymAuthorTeam:
|
881
|
+
{ authorTeam: "P. Fourn.", author: ["P. Fourn."], year: "1934" } } }]],
|
882
|
+
["xAgropogon P. Fourn.", [{ uninomial: { string: "Agropogon",
|
883
|
+
authorship: "P. Fourn.", basionymAuthorTeam: { authorTeam: "P. Fourn.",
|
884
|
+
author: ["P. Fourn."] } } }]],
|
885
|
+
["XAgropogon P.Fourn.", [{ uninomial: { string: "Agropogon",
|
886
|
+
authorship: "P.Fourn.", basionymAuthorTeam: { authorTeam: "P.Fourn.",
|
887
|
+
author: ["P.Fourn."] } } }]],
|
888
|
+
["× Agropogon", [{ uninomial: { string: "Agropogon" } }]],
|
889
|
+
["x Agropogon", [{ uninomial: { string: "Agropogon" } }]],
|
890
|
+
["X Agropogon", [{ uninomial: { string: "Agropogon" } }]],
|
891
|
+
["X Cupressocyparis leylandii", [{ genus: { string: "Cupressocyparis" },
|
892
|
+
species: { string: "leylandii"} }]],
|
893
|
+
["×Heucherella tiarelloides", [{ genus: { string: "Heucherella" },
|
894
|
+
species: { string: "tiarelloides"} }]],
|
895
|
+
["xHeucherella tiarelloides", [{ genus: { string: "Heucherella" },
|
896
|
+
species: { string: "tiarelloides"} }]],
|
897
|
+
["x Heucherella tiarelloides", [{ genus: { string: "Heucherella" },
|
898
|
+
species: { string: "tiarelloides"} }]],
|
899
|
+
["×Agropogon littoralis (Sm.) C. E. Hubb. 1946", [{ genus:
|
900
|
+
{ string: "Agropogon" }, species: { string: "littoralis",
|
901
|
+
authorship: "(Sm.) C. E. Hubb. 1946", combinationAuthorTeam:
|
902
|
+
{ authorTeam: "C. E. Hubb.", author: ["C. E. Hubb."], year: "1946"},
|
903
|
+
basionymAuthorTeam: { authorTeam: "Sm.", author: ["Sm."]} } }]]
|
752
904
|
].each do |res|
|
753
905
|
expect(parse(res[0])).to_not be_nil
|
754
906
|
expect(parse(res[0]).hybrid).to eq true
|
755
907
|
expect(details(res[0])).to eq res[1]
|
756
908
|
end
|
757
909
|
[
|
758
|
-
[
|
759
|
-
|
760
|
-
|
761
|
-
|
910
|
+
["Asplenium X inexpectatum (E.L. Braun 1940) Morton (1956)",
|
911
|
+
[{ genus: { string: "Asplenium" }, species: { string: "inexpectatum",
|
912
|
+
authorship: "(E.L. Braun 1940) Morton (1956)", combinationAuthorTeam:
|
913
|
+
{ authorTeam: "Morton", author: ["Morton"], year: "1956"},
|
914
|
+
basionymAuthorTeam: { authorTeam: "E.L. Braun", author: ["E.L. Braun"],
|
915
|
+
year: "1940"} } }]],
|
916
|
+
["Mentha ×smithiana R. A. Graham 1949",[{ genus: { string: "Mentha" },
|
917
|
+
species: { string: "smithiana", authorship: "R. A. Graham 1949",
|
918
|
+
basionymAuthorTeam: { authorTeam: "R. A. Graham",
|
919
|
+
author: ["R. A. Graham"], year: "1949"} } }]],
|
920
|
+
["Salix ×capreola Andersson (1867)",[{ genus: { string: "Salix" },
|
921
|
+
species: { string: "capreola", authorship: "Andersson (1867)",
|
922
|
+
basionymAuthorTeam: { authorTeam: "Andersson", author: ["Andersson"],
|
923
|
+
year: "1867"} } }]],
|
924
|
+
["Salix x capreola Andersson",[{ genus: { string: "Salix" },
|
925
|
+
species: { string: "capreola", authorship: "Andersson",
|
926
|
+
basionymAuthorTeam: { authorTeam: "Andersson",
|
927
|
+
author: ["Andersson"]} } }]]
|
762
928
|
].each do |res|
|
763
929
|
expect(parse(res[0])).to_not be_nil
|
764
930
|
expect(parse(res[0]).hybrid).to eq true
|
@@ -766,62 +932,102 @@ describe ScientificNameClean do
|
|
766
932
|
end
|
767
933
|
sn = "Rosa alpina x pomifera"
|
768
934
|
expect(canonical(sn)).to eq "Rosa alpina × pomifera"
|
769
|
-
expect(parse(sn).details).to eq [{
|
935
|
+
expect(parse(sn).details).to eq [{ genus: { string: "Rosa" },
|
936
|
+
species: { string: "alpina"} }, { species: { string: "pomifera"},
|
937
|
+
genus: { string: "Rosa"} }]
|
770
938
|
end
|
771
939
|
|
772
940
|
it "parses hybrid combination" do
|
773
941
|
sn = "Arthopyrenia hyalospora X Hydnellum scrobiculatum"
|
774
942
|
expect(parse(sn)).to_not be_nil
|
775
943
|
expect(parse(sn).hybrid).to eq true
|
776
|
-
expect(value(sn)).
|
777
|
-
|
778
|
-
expect(
|
779
|
-
|
780
|
-
sn
|
944
|
+
expect(value(sn)).
|
945
|
+
to eq "Arthopyrenia hyalospora \303\227 Hydnellum scrobiculatum"
|
946
|
+
expect(canonical(sn)).
|
947
|
+
to eq "Arthopyrenia hyalospora × Hydnellum scrobiculatum"
|
948
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
949
|
+
species: { string: "hyalospora"} }, { genus: { string: "Hydnellum"},
|
950
|
+
species: { string: "scrobiculatum"} }]
|
951
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 23],
|
952
|
+
26 => ["genus", 35], 36 => ["species", 49] })
|
953
|
+
sn = "Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum "\
|
954
|
+
"scrobiculatum D.E. Stuntz"
|
781
955
|
expect(parse(sn)).to_not be_nil
|
782
956
|
expect(parse(sn).hybrid).to eq true
|
783
|
-
expect(value(sn)).to eq "Arthopyrenia hyalospora (Banker)
|
784
|
-
|
785
|
-
expect(
|
786
|
-
|
957
|
+
expect(value(sn)).to eq "Arthopyrenia hyalospora (Banker) "\
|
958
|
+
"D. Hall \303\227 Hydnellum scrobiculatum D.E. Stuntz"
|
959
|
+
expect(canonical(sn)).
|
960
|
+
to eq "Arthopyrenia hyalospora × Hydnellum scrobiculatum"
|
961
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 23],
|
962
|
+
25 => ["author_word", 31], 33 => ["author_word", 35],
|
963
|
+
36 => ["author_word", 40], 43 => ["genus", 52],
|
964
|
+
53 => ["species", 66], 67 => ["author_word", 71],
|
965
|
+
72 => ["author_word", 78] })
|
966
|
+
expect(value("Arthopyrenia hyalospora X")).
|
967
|
+
to eq "Arthopyrenia hyalospora \303\227 ?"
|
787
968
|
sn = "Arthopyrenia hyalospora x"
|
788
969
|
expect(parse(sn)).to_not be_nil
|
789
970
|
expect(parse(sn).hybrid).to eq true
|
790
971
|
expect(canonical(sn)).to eq "Arthopyrenia hyalospora"
|
791
|
-
expect(details(sn)).to eq [{:
|
792
|
-
|
972
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
973
|
+
species: { string: "hyalospora"} }, "?"]
|
974
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 23] })
|
793
975
|
sn = "Arthopyrenia hyalospora × ?"
|
794
976
|
expect(parse(sn)).to_not be_nil
|
795
977
|
expect(parse(sn).hybrid).to eq true
|
796
|
-
expect(details(sn)).to eq [{:
|
797
|
-
|
978
|
+
expect(details(sn)).to eq [{ genus: { string: "Arthopyrenia" },
|
979
|
+
species: { string: "hyalospora"} }, "?"]
|
980
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 12], 13 => ["species", 23] })
|
798
981
|
end
|
799
982
|
|
800
|
-
it
|
983
|
+
it "parses names with taxon concept" do
|
801
984
|
sn = "Stenometope laevissimus sec. Eschmeyer 2004"
|
802
|
-
expect(details(sn)).to eq [{
|
803
|
-
|
985
|
+
expect(details(sn)).to eq [{ genus: { string: "Stenometope" },
|
986
|
+
species: { string: "laevissimus"}, taxon_concept:
|
987
|
+
{ authorship: "Eschmeyer 2004",
|
988
|
+
basionymAuthorTeam: { authorTeam: "Eschmeyer",
|
989
|
+
author: ["Eschmeyer"], year: "2004"} } }]
|
990
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 11], 12 => ["species", 23],
|
991
|
+
29 => ["author_word", 38], 39 => ["year", 43] })
|
804
992
|
sn = "Stenometope laevissimus Bibron 1855 sec. Eschmeyer 2004"
|
805
993
|
expect(parse(sn)).to_not be_nil
|
806
|
-
expect(details(sn)).to eq [{
|
807
|
-
|
994
|
+
expect(details(sn)).to eq [{ genus: { string: "Stenometope" },
|
995
|
+
species: { string: "laevissimus", authorship: "Bibron 1855",
|
996
|
+
basionymAuthorTeam: { authorTeam: "Bibron", author: ["Bibron"],
|
997
|
+
year: "1855"} }, taxon_concept: { authorship: "Eschmeyer 2004",
|
998
|
+
basionymAuthorTeam: { authorTeam: "Eschmeyer",
|
999
|
+
author: ["Eschmeyer"], year: "2004"} } }]
|
1000
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 11], 12 => ["species", 23],
|
1001
|
+
24 => ["author_word", 30], 31 => ["year", 35],
|
1002
|
+
41 => ["author_word", 50], 51 => ["year", 55] })
|
808
1003
|
end
|
809
1004
|
|
810
|
-
it
|
811
|
-
expect(parse(" Asplenium X inexpectatum (E.L. Braun 1940)
|
1005
|
+
it "parses names with spaces inconsistencies" do
|
1006
|
+
expect(parse(" Asplenium X inexpectatum (E.L. Braun 1940) "\
|
1007
|
+
"Morton (1956) ")).to_not be_nil
|
812
1008
|
end
|
813
1009
|
|
814
|
-
it
|
815
|
-
sn = "Trematosphaeria phaeospora (E. Müll.)
|
1010
|
+
it "parses names with any number of spaces" do
|
1011
|
+
sn = "Trematosphaeria phaeospora (E. Müll.)"\
|
1012
|
+
" L. Holm 1957"
|
816
1013
|
expect(parse(sn)).to_not be_nil
|
817
1014
|
expect(value(sn)).to eq "Trematosphaeria phaeospora (E. Müll.) L. Holm 1957"
|
818
1015
|
expect(canonical(sn)).to eq "Trematosphaeria phaeospora"
|
819
|
-
expect(details(sn)).to eq [{
|
820
|
-
|
1016
|
+
expect(details(sn)).to eq [{ genus: { string: "Trematosphaeria" },
|
1017
|
+
species: { string: "phaeospora", authorship: "(E. Müll.) "\
|
1018
|
+
"L. Holm 1957",
|
1019
|
+
combinationAuthorTeam: { authorTeam: "L. Holm",
|
1020
|
+
author: ["L. Holm"], year: "1957"},
|
1021
|
+
basionymAuthorTeam: { authorTeam: "E. Müll.", author: ["E. Müll."]} } }]
|
1022
|
+
expect(pos(sn)).to eq({ 0 => ["genus", 15], 16 => ["species", 26],
|
1023
|
+
28 => ["author_word", 30], 31 => ["author_word", 36],
|
1024
|
+
46 => ["author_word", 48], 61 => ["author_word", 65],
|
1025
|
+
66 => ["year", 70] })
|
821
1026
|
end
|
822
1027
|
|
823
|
-
it
|
824
|
-
expect(parse("Pseudocercospora dendrobii (H.C. Burnett 1883)
|
1028
|
+
it "does not parse serveral authors groups with several years NOT CORRECT" do
|
1029
|
+
expect(parse("Pseudocercospora dendrobii (H.C. Burnett 1883) "\
|
1030
|
+
"(Leight.) (Movss. 1967) U. Braun & Crous 2003")).to be_nil
|
825
1031
|
end
|
826
1032
|
|
827
1033
|
it "does not parse unallowed utf-8 chars in name part" do
|
@@ -831,47 +1037,90 @@ describe ScientificNameClean do
|
|
831
1037
|
end
|
832
1038
|
|
833
1039
|
it "parses new stuff" do
|
834
|
-
sn =
|
835
|
-
|
836
|
-
expect(
|
837
|
-
|
838
|
-
|
839
|
-
|
840
|
-
|
841
|
-
|
842
|
-
|
843
|
-
expect(
|
844
|
-
sn =
|
845
|
-
expect(details(sn)).to eq [{
|
846
|
-
|
847
|
-
|
848
|
-
|
849
|
-
|
850
|
-
|
851
|
-
|
852
|
-
sn =
|
853
|
-
expect(details(sn)).to eq [{
|
854
|
-
|
855
|
-
|
1040
|
+
sn = "Nesticus quelpartensis Paik & Namkung, in Paik, "\
|
1041
|
+
"Yaginuma & Namkung, 1969"
|
1042
|
+
expect(details(sn)).to eq [{ genus: { string: "Nesticus" },
|
1043
|
+
species: { string: "quelpartensis",
|
1044
|
+
authorship: "Paik & Namkung, in Paik, Yaginuma & Namkung, 1969",
|
1045
|
+
basionymAuthorTeam: { authorTeam: "Paik & Namkung",
|
1046
|
+
author: ["Paik", "Namkung"], exAuthorTeam:
|
1047
|
+
{ authorTeam: "Paik, Yaginuma & Namkung",
|
1048
|
+
author: ["Paik", "Yaginuma", "Namkung"], year: "1969"} } } }]
|
1049
|
+
expect(parse("Dipoena yoshidai Ono, in Ono et al., 1991")).to_not be_nil
|
1050
|
+
sn = "Latrodectus mactans bishopi Kaston, 1938"
|
1051
|
+
expect(details(sn)).to eq [{ genus: { string: "Latrodectus" },
|
1052
|
+
species: { string: "mactans"}, infraspecies: [{ string: "bishopi",
|
1053
|
+
rank: "n/a", authorship: "Kaston, 1938",
|
1054
|
+
basionymAuthorTeam: { authorTeam: "Kaston",
|
1055
|
+
author: ["Kaston"], year: "1938"} }]}]
|
1056
|
+
#have to figure out black lists for this one
|
1057
|
+
sn = "Thiobacillus x Parker and Prisk 1953"
|
1058
|
+
sn = "Bacille de Plaut, Kritchevsky and Séguin 1921"
|
1059
|
+
expect(details(sn)).to eq [{ uninomial: { string: "Bacille",
|
1060
|
+
authorship: "de Plaut, Kritchevsky and Séguin 1921",
|
1061
|
+
basionymAuthorTeam: { authorTeam: "de Plaut, Kritchevsky and Séguin",
|
1062
|
+
author: ["de Plaut", "Kritchevsky", "Séguin"], year: "1921" } } }]
|
1063
|
+
sn = "Araneus van bruysseli Petrunkevitch, 1911"
|
1064
|
+
expect(details(sn)).to eq [{ genus: { string: "Araneus" },
|
1065
|
+
species: { string: "van"}, infraspecies: [{ string: "bruysseli",
|
1066
|
+
rank: "n/a", authorship: "Petrunkevitch, 1911",
|
1067
|
+
basionymAuthorTeam: { authorTeam: "Petrunkevitch",
|
1068
|
+
author: ["Petrunkevitch"], year: "1911"} }]}]
|
1069
|
+
sn = "Sapromyces laidlawi ab Sabin 1941"
|
1070
|
+
expect(details(sn)).to eq [{ genus: { string: "Sapromyces" },
|
1071
|
+
species: { string: "laidlawi", authorship: "ab Sabin 1941",
|
1072
|
+
basionymAuthorTeam: { authorTeam: "ab Sabin", author: ["ab Sabin"],
|
1073
|
+
year: "1941"} } }]
|
1074
|
+
sn = "Nocardia rugosa di Marco and Spalla 1957"
|
1075
|
+
expect(details(sn)).to eq [{ genus: { string: "Nocardia" },
|
1076
|
+
species: { string: "rugosa", authorship: "di Marco and Spalla 1957",
|
1077
|
+
basionymAuthorTeam: { authorTeam: "di Marco and Spalla",
|
1078
|
+
author: ["di Marco", "Spalla"], year: "1957"} } }]
|
1079
|
+
sn = "Flexibacter elegans Lewin 1969 non Soriano 1945"
|
1080
|
+
expect(details(sn)).to eq [{ genus: { string: "Flexibacter" },
|
1081
|
+
species: { string: "elegans", authorship: "Lewin 1969 non Soriano 1945",
|
1082
|
+
basionymAuthorTeam: { authorTeam: "Lewin", author: ["Lewin"],
|
1083
|
+
year: "1969"} } }]
|
1084
|
+
sn = "Flexibacter elegans Soriano 1945, non Lewin 1969"
|
1085
|
+
expect(details(sn)).to eq [{ genus: { string: "Flexibacter" },
|
1086
|
+
species: { string: "elegans", authorship: "Soriano 1945, non Lewin 1969",
|
1087
|
+
basionymAuthorTeam: { authorTeam: "Soriano", author: ["Soriano"],
|
1088
|
+
year: "1945"} } }]
|
1089
|
+
sn = "Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg"
|
1090
|
+
expect(details(sn)).to eq [{ genus: { string: "Schottera" },
|
1091
|
+
species: { string: "nicaeensis",
|
1092
|
+
authorship: "(J.V. Lamouroux ex Duby) Guiry & Hollenberg",
|
1093
|
+
combinationAuthorTeam: { authorTeam: "Guiry & Hollenberg",
|
1094
|
+
author: ["Guiry", "Hollenberg"]}, basionymAuthorTeam:
|
1095
|
+
{ authorTeam: "J.V. Lamouroux", author: ["J.V. Lamouroux"],
|
1096
|
+
exAuthorTeam: { authorTeam: "Duby", author: ["Duby"]} } } }]
|
1097
|
+
sn = "Deschampsia cespitosa ssp pumila"
|
1098
|
+
expect(details(sn)).to eq [{ genus: { string: "Deschampsia" },
|
1099
|
+
species: { string: "cespitosa"},
|
1100
|
+
infraspecies: [{ string: "pumila", rank: "ssp"}]}]
|
856
1101
|
end
|
857
1102
|
|
858
1103
|
# Combination genus names merges without dash or capital letter
|
859
|
-
it
|
860
|
-
|
1104
|
+
it "parses hybrid names with capitalized second name in genus" do
|
1105
|
+
# (botanical code error)
|
1106
|
+
sn = "Anacampti-Platanthera P. Fourn."
|
861
1107
|
expect(parse(sn)).to_not be_nil
|
862
|
-
expect(canonical(sn)).to eq
|
863
|
-
sn =
|
1108
|
+
expect(canonical(sn)).to eq "Anacamptiplatanthera"
|
1109
|
+
sn = "Anacampti-Platanthera vulgaris P. Fourn."
|
864
1110
|
expect(parse(sn)).to_not be_nil
|
865
|
-
expect(canonical(sn)).to eq
|
1111
|
+
expect(canonical(sn)).to eq "Anacamptiplatanthera vulgaris"
|
866
1112
|
end
|
867
1113
|
|
868
|
-
it
|
869
|
-
sn =
|
870
|
-
expect(canonical(sn)).to eq
|
871
|
-
sn =
|
872
|
-
expect(canonical(sn)).to eq
|
1114
|
+
it "parses genus names starting with uppercase letters AE OE" do
|
1115
|
+
sn = "AEmona separata Broun 1921"
|
1116
|
+
expect(canonical(sn)).to eq "Aemona separata"
|
1117
|
+
sn = "OEmona simplex White, 1855"
|
1118
|
+
expect(canonical(sn)).to eq "Oemona simplex"
|
873
1119
|
end
|
874
|
-
|
1120
|
+
|
1121
|
+
|
1122
|
+
#"Arthrosamanea eriorhachis (Harms & sine ref. ) Aubrév."
|
1123
|
+
# -- ignore & sine ref. (means without reference)
|
875
1124
|
|
876
1125
|
=begin
|
877
1126
|
new stuff
|
@@ -881,7 +1130,8 @@ describe ScientificNameClean do
|
|
881
1130
|
sn
|
882
1131
|
Tamiops swinhoei near hainanus|Tamiops swinhoei near hainanus
|
883
1132
|
Conus textile form archiepiscopus|Conus textile form archiepiscopus|
|
884
|
-
Crypticus pseudosericeus ssp. olivieri Desbrochers des
|
1133
|
+
Crypticus pseudosericeus ssp. olivieri Desbrochers des \
|
1134
|
+
Loges,1881|Crypticus pseudosericeus olivieri des
|
885
1135
|
Solanum nigrum subsp nigrum|Solanum nigrum subsp nigrum
|
886
1136
|
Protoglossus taeniatum author unknown|Protoglossus taeniatum author unknown
|
887
1137
|
Dupontiella (S. ?) bicolor|Dupontiella|
|