biodiversity19 1.0.22 → 1.1.0

data/CHANGELOG

@@ -1,3 +1,6 @@
+1.1.0  -- added multiuninomials, fixes in identification annotations (aff.,
+cf., sp. etc), bug fixes, more robust salvage mode
+
 1.0.17 -- fixed a bug which prevented all diacritics be converted correctly
 
 1.0.16 -- dirty mode now converts ë to e

data/Gemfile

@@ -8,8 +8,6 @@ group :development do
 end
 
 group :test do
-  if RUBY_VERSION =~ /^1\.9/
-    gem "ruby-debug19", :require => "ruby-debug"
-  end
+  gem "debugger"
   gem "rspec"
 end

data/Gemfile.lock

@@ -1,8 +1,14 @@
 GEM
   remote: http://rubygems.org/
   specs:
-    archive-tar-minitar (0.5.2)
     columnize (0.3.6)
+    debugger (1.2.1)
+      columnize (>= 0.3.1)
+      debugger-linecache (~> 1.1.1)
+      debugger-ruby_core_source (~> 1.1.4)
+    debugger-linecache (1.1.2)
+      debugger-ruby_core_source (>= 1.1.1)
+    debugger-ruby_core_source (1.1.4)
     diff-lcs (1.1.3)
     git (1.2.5)
     jeweler (1.8.4)
@@ -11,8 +17,6 @@ GEM
       rake
       rdoc
     json (1.7.5)
-    linecache19 (0.5.12)
-      ruby_core_source (>= 0.1.4)
     parallel (0.5.18)
     polyglot (0.3.3)
     rake (0.9.2.2)
@@ -26,16 +30,6 @@ GEM
     rspec-expectations (2.11.2)
       diff-lcs (~> 1.1.3)
     rspec-mocks (2.11.2)
-    ruby-debug-base19 (0.11.25)
-      columnize (>= 0.3.1)
-      linecache19 (>= 0.5.11)
-      ruby_core_source (>= 0.1.4)
-    ruby-debug19 (0.11.6)
-      columnize (>= 0.3.1)
-      linecache19 (>= 0.5.11)
-      ruby-debug-base19 (>= 0.11.19)
-    ruby_core_source (0.1.5)
-      archive-tar-minitar (>= 0.5.2)
     treetop (1.4.10)
       polyglot
       polyglot (>= 0.3.1)
@@ -44,8 +38,8 @@ PLATFORMS
   ruby
 
 DEPENDENCIES
+  debugger
   jeweler
   parallel
   rspec
-  ruby-debug19
   treetop

data/VERSION

@@ -1 +1 @@
-1.0.22
+1.1.0

data/lib/biodiversity/parser.rb

@@ -12,17 +12,12 @@ module PreProcessor
   TAXON_CONCEPTS2 = /\s+(\(?s\.\s?s\.|\(?s\.\s?l\.|\(?s\.\s?str\.|\(?s\.\s?lat\.|sec\.|sec|near)\b.*$/
   TAXON_CONCEPTS3 = /(,\s*|\s+)(pro parte|p\.\s?p\.)\s*$/i  
   NOMEN_CONCEPTS  = /(,\s*|\s+)(\(?nomen|\(?nom\.|\(?comb\.).*$/i
-  COMPARATORS     = /\s+(aff\.|aff)\b.*$/i
-  CF_COMPARATOR   = /\s+(cf\.|cf)\s+/i
   LAST_WORD_JUNK  = /(,\s*|\s+)(spp\.|spp|var\.|var|von|van|sensu|new|non|nec|cf\.|cf|sp\.|sp|ssp\.|ssp|subsp|subgen|hybrid|hort\.|hort)\s*$/i
   
   def self.clean(a_string)
-    [NOTES, TAXON_CONCEPTS1, TAXON_CONCEPTS2, TAXON_CONCEPTS3, NOMEN_CONCEPTS, COMPARATORS, LAST_WORD_JUNK].each do |i|
+    [NOTES, TAXON_CONCEPTS1, TAXON_CONCEPTS2, TAXON_CONCEPTS3, NOMEN_CONCEPTS, LAST_WORD_JUNK].each do |i|
       a_string = a_string.gsub(i, '')
     end
-    [CF_COMPARATOR].each do |i|
-      a_string = a_string.gsub(i, ' ')
-    end
     a_string = a_string.tr('ſ','s') #old 's'
     a_string
   end   
@@ -100,7 +95,17 @@ class ScientificNameParser
     elsif unknown_placement?(a_string)
       @parsed = { :verbatim => a_string }
     else
-      @parsed = @clean.parse(a_string) || @dirty.parse(a_string) || @canonical.parse(a_string) || { :verbatim => a_string }
+      begin
+        @parsed = @clean.parse(a_string) || @dirty.parse(a_string) 
+        unless @parsed
+          index = @dirty.index || @clean.index
+          salvage_match = a_string[0..index].match(/(.*[^,|\s]+)[,|\s]?\b.+$/)
+          salvage_string = salvage_match ? salvage_match[1] : a_string
+          @parsed =  @dirty.parse(salvage_string) || @canonical.parse(a_string) || { :verbatim => a_string }
+        end
+      rescue
+        @parsed = {:scientificName => {:parsed => false, :verbatim => name,  :error => 'Parser error'}}
+      end
     end
 
     def @parsed.verbatim=(a_string)

data/lib/biodiversity/parser/scientific_name_canonical.treetop

@@ -110,6 +110,8 @@ grammar ScientificNameCanonical
   end
   
   rule garbage
+    space "$$g@rbg3$$"
+    /
     space (["',.]) space [^щ]*
     /
     space_hard [^ш]+

data/lib/biodiversity/parser/scientific_name_clean.treetop

@@ -178,6 +178,8 @@ grammar ScientificNameClean
   end
 
   rule scientific_name_1
+    multiuninomial_name
+    /
     multinomial_name
     /
     uninomial_name  
@@ -209,10 +211,34 @@ grammar ScientificNameClean
     #/
     #latin_word
   end
-  
+
+  rule unparsed
+    .+ space {
+    
+      def value
+        ''
+      end
+
+      def hybrid
+        false
+      end
+
+      def canonical
+        ''
+      end
+
+      def pos
+        {interval.begin => ['unparsed', interval.end]}
+      end
+
+      def details
+        {:unparsed => text_value}
+      end
+    }
+  end
   
   rule multinomial_name
-    a:genus space b:infragenus space species_prefix? space c:species space_hard d:infraspecies_mult {
+    a:genus space b:infragenus space aid:annotation_identification? space c:species space_hard d:infraspecies_mult {
       def value
         a.value + " " + b.value + " " + c.value + " " + d.value
       end
@@ -234,17 +260,29 @@ grammar ScientificNameClean
       end
     }
     /  
-    a:genus space b:infragenus space species_prefix? space c:species {
+    a:genus space b:infragenus space aid:annotation_identification? space c:species {
       def value
-        a.value + " " + b.value + " " + c.value
+        if defined? aid.apply
+          a.value + " " + b.value + aid.apply(c)
+        else
+          a.value + " " + b.value + " " + c.value
+        end
       end
       
       def canonical
-        a.canonical + " " + c.canonical
+        if defined? aid.apply
+          a.canonical + aid.canonical(c)
+        else
+          a.canonical + " " + c.canonical
+        end
       end
       
       def pos
-        a.pos.merge(b.pos).merge(c.pos)
+        if defined? aid.apply
+          a.pos.merge(b.pos).merge(aid.pos(c))
+        else
+          a.pos.merge(b.pos).merge(c.pos)
+        end
       end
       
       def hybrid
@@ -252,11 +290,15 @@ grammar ScientificNameClean
       end
       
       def details
-        a.details.merge(b.details).merge(c.details)
+        if defined? aid.apply
+          a.details.merge(b.details).merge(aid.apply(c))
+        else
+          a.details.merge(b.details).merge(c.details)
+        end
       end
     }
     /
-    a:genus space species_prefix? space b:species space_hard c:infraspecies_mult {
+    a:genus space aid:annotation_identification? space b:species space_hard c:infraspecies_mult {
       def value
         a.value + " " + b.value + " " + c.value 
       end
@@ -278,17 +320,29 @@ grammar ScientificNameClean
       end
     }
     /
-    a:genus space species_prefix? space b:species {
+    a:genus space aid:annotation_identification? space b:species {
       def value
-        a.value + " " + b.value 
+        if defined? aid.apply
+          a.value + aid.apply(b)
+        else
+          a.value + " " + b.value 
+        end
       end
 
       def canonical
-        a.canonical + " " + b.canonical
+        if defined? aid.apply
+          a.canonical + aid.canonical(b)
+        else
+          a.canonical + " " + b.canonical
+        end
       end
       
       def pos
-        a.pos.merge(b.pos)
+        if defined? aid.apply
+          a.pos.merge(aid.pos(b))
+        else
+          a.pos.merge(b.pos)
+        end
       end
       
       def hybrid
@@ -296,7 +350,58 @@ grammar ScientificNameClean
       end
       
       def details
-        a.details.merge(b.details)
+        if defined? aid.apply
+          a.details.merge(aid.details(b))
+        else
+          a.details.merge(b.details)
+        end
+      end
+    }
+    /
+    a:genus space aid:annotation_identification space b:unparsed {
+      def value
+        a.value + aid.apply(b)
+      end
+
+      def canonical
+        a.canonical + aid.canonical(b)
+      end
+      
+      def pos
+        a.pos.merge(aid.pos(b))
+      end
+      
+      def hybrid
+        false
+      end
+      
+      def details
+        a.details.merge(aid.details(b))
+      end
+    }
+  end
+
+  rule multiuninomial_name
+    a:uninomial_name space b:rank_uninomial space c:uninomial_name {
+
+      def value 
+        a.value + " " + b.value + " " + c.value
+      end
+
+      def canonical
+        a.canonical
+      end
+
+      def hybrid
+        false
+      end
+
+      def pos
+        a.pos.merge(b.pos(c))
+      end
+
+      def details
+        a.details.merge(b.details(c))
       end
     }
   end
@@ -324,7 +429,11 @@ grammar ScientificNameClean
     /
     infraspecies {
       def details
-        {:infraspecies => [super[:infraspecies]]}
+        if super[:annotation_identification]
+          {:infraspecies => [{:annotation_identification => super[:annotation_identification], :ignored => super[:ignored]}]}
+        else
+          {:infraspecies => [super[:infraspecies]]}
+        end
       end
     }
   end
@@ -352,7 +461,7 @@ grammar ScientificNameClean
   end
   
   rule infraspecies_string
-    sel:rank space_hard a:species_word {
+    sel:rank space a:species_word {
       def value 
         sel.apply(a)
       end
@@ -369,6 +478,30 @@ grammar ScientificNameClean
       end
     }
     /
+    aid:annotation_identification space a:species_word ![\.] {
+      def value
+        aid.apply(a)
+      end
+      
+      def canonical
+        aid.canonical(a)
+      end
+  
+      def pos
+        def a.pos
+          {interval.begin => ['infraspecies', a.interval.end]}
+        end
+        aid.pos(a)
+      end
+  
+      def details
+        def a.details
+          {:infraspecies => {:string => value, :rank => 'n/a'}}
+        end
+        aid.details(a)
+      end
+    }
+    /
     a:species_word ![\.] {
       def value
         a.value
@@ -403,14 +536,14 @@ grammar ScientificNameClean
   end
 
   rule rank
-    ("morph."/"f.sp."/"B"/"ssp."/"ssp"/"mut."/"nat"/"nothosubsp."/"convar."/"pseudovar."/"sect."/"ser."/"var."/"subvar."/ "[var.]" /"var"/"subsp."/"subsp"/"subf."/"race"/"forma"/"form."/"form"/"fo."/"f."/"α"/"ββ"/"β"/"γ"/"δ"/"ε"/"φ"/"θ"/"μ"/"a."/"b."/"c."/"d."/"e."/"g."/"k."/"****"/"**"/"*")
+    ("morph."/"f.sp."/"B "/"ssp."/"ssp "/"mut."/"nat "/"nothosubsp."/"convar."/"pseudovar."/"sect."/"ser."/"var."/"subvar."/ "[var.]" /"var "/"subsp."/"subsp "/"subf."/"race "/"forma "/"fma."/"fma "/"form."/"form "/"fo."/"f."/"α"/"ββ"/"β"/"γ"/"δ"/"ε"/"φ"/"θ"/"μ"/"a."/"b."/"c."/"d."/"e."/"g."/"k."/"****"/"**"/"*")
     {
       def value
         text_value.strip
       end
 
       def apply(a)
-        " " + text_value + " " + a.value
+        " " + text_value.strip + " " + a.value
       end
 
       def canonical(a)
@@ -418,11 +551,28 @@ grammar ScientificNameClean
       end
       
       def pos(a)
-        {interval.begin => ['infraspecific_type', interval.end], a.interval.begin => ['infraspecies', a.interval.end]}
+        interval_end =  text_value[-1] == ' ' ? interval.end - 1 : interval.end 
+        {interval.begin => ['infraspecific_type', interval_end], a.interval.begin => ['infraspecies', a.interval.end]}
       end
       
       def details(a = nil)
-        {:infraspecies => {:string => (a.value rescue nil), :rank => text_value}}
+        {:infraspecies => {:string => (a.value rescue nil), :rank => text_value.strip}}
+      end
+    }
+  end
+
+  rule rank_uninomial
+    ("sect."/"sect "/"subsect."/"subsect "/"trib."/"trib "/"subtrib."/"subtrib "/"fam."/"fam "/"subfam."/"subfam "/"supertrib."/"supertrib ") {
+      def value
+        text_value.strip
+      end
+
+      def pos(uni)
+        {interval.begin => ['rank_uninomial', interval.end], uni.interval.begin => ['uninomial', uni.interval.end]}
+      end
+      
+      def details(uni)
+        {:rank_uninomials => value, :uninomial2 => uni.details[:uninomial]}
       end
     }
   end
@@ -454,28 +604,6 @@ grammar ScientificNameClean
   end
   
   rule species_string
-    # a:species_word &(space_hard author_prefix_word space_hard) {
-    #   def value 
-    #     a.value
-    #   end
-    #   
-    #   def canonical
-    #     a.value
-    #   end
-    #   
-    #   def hybrid
-    #     a.hybrid rescue false
-    #   end
-    # 
-    #   def pos
-    #     {a.interval.begin => ['species', a.interval.end]}
-    #   end
-    # 
-    #   def details
-    #     {:species => {:string => a.value}}
-    #   end
-    # }
-    # /
     species_word {
       def canonical
         value
@@ -847,7 +975,7 @@ grammar ScientificNameClean
   
   
   rule unknown_auth
-    ("auct."/"auct"/"hort."/"hort"/"anon."/"anon"/"ht."/"ht") {
+    ("auct."/"auct"/"hort."/"hort"/"anon."/"anon"/"ht."/"ht") !latin_word {
       def value
         text_value
       end
@@ -1130,10 +1258,55 @@ grammar ScientificNameClean
     }
   end
 
-  rule species_prefix
-    ("aff."/"corrig."/"?") &space_hard
+  rule annotation_identification
+    ("sp.aff."/"sp. aff."/"sp."/"sp "/"spp."/"spp "/"aff."/"aff "/"?") {
+
+      def value
+        text_value.strip
+      end
+
+      def apply(sp)
+        ''
+      end
+
+      def canonical(sp)
+        ''
+      end
+
+      def pos(sp)
+        interval_end = text_value[-1] == ' ' ? interval.end - 1 : interval.end
+        {interval.begin => ['annotation_identification', interval.end]}
+      end
+
+      def details(sp)
+        {:annotation_identification => value, :ignored => sp.details}
+      end
+    }
+    /
+    ("cf."/"cf ") {
+      def value
+        text_value.strip
+      end
+
+      def apply(sp)
+        ' ' + value + ' ' + sp.value
+      end
+
+      def canonical(sp)
+        ' ' + sp.canonical
+      end
+
+      def pos(sp)
+        interval_end = text_value[-1] == ' ' ? interval.end - 1 : interval.end
+        {interval.begin => ['annotation_identification', interval.end]}.merge(sp.pos)
+      end
+
+      def details(sp)
+        {:annotation_identification => value, :species => sp.details}
+      end
+    }
   end
-  
+
   rule species_word
     a:[0-9]+ "-"? b:latin_word {
       def value
@@ -1241,7 +1414,7 @@ grammar ScientificNameClean
   end
   
   rule year_number
-    [12] [7890] [0-9] [0-9]? [\?]? {
+    [12] [7890] [0-9] ([0-9] [\?]?/"?") {
       def value
         text_value
       end

data/lib/biodiversity/parser/scientific_name_dirty.treetop

@@ -92,42 +92,42 @@ grammar ScientificNameDirty
     super
   end
   
-  rule infraspecies_string
-    sel:rank space_hard a:species_word {
-      def value 
-        sel.apply(a)
-      end
-      def canonical
-        sel.canonical(a)
-      end
-      
-      def pos
-        sel.pos(a)
-      end
-    
-      def details
-        sel.details(a)
-      end
-    }
-    /
-    a:species_word ![\.] {
-      def value
-        a.value
-      end
-      
-      def canonical
-        value
-      end
-  
-      def pos
-        {interval.begin => ['infraspecies', interval.end]}
-      end
-  
-      def details
-        {:infraspecies => {:string => value, :rank => 'n/a'}}
-      end
-    }
-  end
+  # rule infraspecies_string
+  #   sel:rank space_hard a:species_word {
+  #     def value 
+  #       sel.apply(a)
+  #     end
+  #     def canonical
+  #       sel.canonical(a)
+  #     end
+  #     
+  #     def pos
+  #       sel.pos(a)
+  #     end
+  #   
+  #     def details
+  #       sel.details(a)
+  #     end
+  #   }
+  #   /
+  #   a:species_word ![\\.] {
+  #     def value
+  #       a.value
+  #     end
+  #     
+  #     def canonical
+  #       value
+  #     end
+  # 
+  #     def pos
+  #       {interval.begin => ['infraspecies', interval.end]}
+  #     end
+  # 
+  #     def details
+  #       {:infraspecies => {:string => value, :rank => 'n/a'}}
+  #     end
+  #   }
+  # end
   
   rule species
     a:species_string space b:year {

data/spec/parser/scientific_name_clean.spec.rb

@@ -28,6 +28,12 @@ describe ScientificNameClean do
     details(sn).should == [{:uninomial=>{:string=>"Pseudocercospora", :authorship=>"Spegazzini, 1910", :basionymAuthorTeam=>{:authorTeam=>"Spegazzini", :author=>["Spegazzini"], :year=>"1910"}}}]
     pos(sn).should == {0=>["uninomial", 16], 17=>["author_word", 27], 29=>["year", 33]}
   end
+
+  it "should parse uninomials with uninomial ranks" do
+    sn = "Epacridaceae trib. Archerieae Crayn & Quinn"
+    parse(sn).should_not be_nil
+    details(sn).should == [{:uninomial=>{:string=>"Epacridaceae"}, :rank_uninomials=>"trib.", :uninomial2=>{:string=>"Archerieae", :authorship=>"Crayn & Quinn", :basionymAuthorTeam=>{:authorTeam=>"Crayn & Quinn", :author=>["Crayn", "Quinn"]}}}]
+  end
   
   it 'should parse names with a valid 2 letter genus' do
     ["Ca Dyar 1914",
@@ -204,6 +210,23 @@ describe ScientificNameClean do
     parse("Zophosis persis (Chatanay) 1914").should_not be_nil
     #parse("Zophosis persis Chatanay (1914)").should_not be_nil
   end  
+
+  it "should be able to parse name with identificaation annotation -- aff cf sp spp" do 
+    sn = 'Diplocephalus aff. procerus Thaler, 1972'
+    details(sn).should ==  [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"aff.", :ignored=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
+    sn = 'Diplocephalus aff procerus Thaler, 1972'
+    details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"aff", :ignored=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
+    sn = 'Diplocephalus affprocerus Thaler, 1972'
+    details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :species=>{:string=>"affprocerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}]
+    sn = 'Diplocephalus cf. procerus Thaler, 1972'
+    details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"cf.", :species=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
+    sn = 'Diplocephalus cf procerus Thaler, 1972'
+    details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"cf", :species=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
+    sn = 'Sphingomonas sp. 37'
+    details(sn).should == [{:genus=>{:string=>"Sphingomonas"}, :annotation_identification=>"sp.", :ignored=>{:unparsed=>"37"}}]
+    sn = "Thryothorus leucotis spp. bogotensis"
+    details(sn).should == [{:genus=>{:string=>"Thryothorus"}, :species=>{:string=>"leucotis"}, :infraspecies=>[{:annotation_identification=>"spp.", :ignored=>{:infraspecies=>{:string=>"bogotensis", :rank=>"n/a"}}}]}]
+  end
   
   it 'should parse scientific name' do
     sn = "Pseudocercospora dendrobii(H.C.     Burnett)U. Braun & Crous     2003"
@@ -291,6 +314,12 @@ describe ScientificNameClean do
     parse(sn).should_not be_nil
     pos(sn).should == {0=>["genus", 4], 5=>["species", 10], 11=>["unknown_author", 14]}
   end
+
+  it 'should parse normal names with hort or anon in them' do
+    sn = "Mus musculus hortulanus"
+    pr = parse(sn).should_not be_nil
+    pos(sn).should == {0=>["genus", 3], 4=>["species", 12], 13=>["infraspecies", 23]}
+  end
   
   it 'should parse real world examples' do
     sn = "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
@@ -539,8 +568,6 @@ describe ScientificNameClean do
     parse('Dipoena yoshidai Ono, in Ono et al., 1991').should_not be_nil
     sn = 'Latrodectus mactans bishopi Kaston, 1938'
     details(sn).should == [{:genus=>{:string=>"Latrodectus"}, :species=>{:string=>"mactans"}, :infraspecies=>[{:string=>"bishopi", :rank=>"n/a", :authorship=>"Kaston, 1938", :basionymAuthorTeam=>{:authorTeam=>"Kaston", :author=>["Kaston"], :year=>"1938"}}]}]
-    sn = 'Diplocephalus aff. procerus Thaler, 1972'
-    details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}]
     sn = 'Thiobacillus x Parker and Prisk 1953' #have to figure out black lists for this one
     sn = 'Bacille de Plaut, Kritchevsky and Séguin 1921'
     details(sn).should == [{:uninomial=>{:string=>"Bacille", :authorship=>"de Plaut, Kritchevsky and Séguin 1921", :basionymAuthorTeam=>{:authorTeam=>"de Plaut, Kritchevsky and Séguin", :author=>["de Plaut", "Kritchevsky", "Séguin"], :year=>"1921"}}}]

data/spec/parser/scientific_name_dirty.spec.rb

@@ -76,8 +76,6 @@ describe ScientificNameDirty do
     details(sn).should == [{:genus=>{:string=>"Campylobacter"}, :species=>{:string=>"pyloridis", :authorship=>"Marshall et al.1985.", :basionymAuthorTeam=>{:authorTeam=>"Marshall et al.", :author=>["Marshall et al."], :year=>"1985"}}}]
     sn = 'Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).'
     details(sn).should == [{:genus=>{:string=>"Staphylococcus"}, :species=>{:string=>"hyicus"}, :infraspecies=>[{:string=>"chromogenes", :rank=>"n/a", :authorship=>"Devriese et al. 1978", :basionymAuthorTeam=>{:authorTeam=>"Devriese et al.", :author=>["Devriese et al."], :year=>"1978"}}]}]
-    sn = 'Kitasatospora corrig. griseola Takahashi et al. 1985.'
-    details(sn).should == [{:genus=>{:string=>"Kitasatospora"}, :species=>{:string=>"griseola", :authorship=>"Takahashi et al. 1985.", :basionymAuthorTeam=>{:authorTeam=>"Takahashi et al.", :author=>["Takahashi et al."], :year=>"1985"}}}]
     sn = 'Beijerinckia derxii venezuelae corrig. Thompson and Skerman, 1981'
     details(sn).should == [{:genus=>{:string=>"Beijerinckia"}, :species=>{:string=>"derxii"}, :infraspecies=>[{:string=>"venezuelae", :rank=>"n/a", :authorship=>"Thompson and Skerman, 1981", :basionymAuthorTeam=>{:authorTeam=>"Thompson and Skerman", :author=>["Thompson", "Skerman"], :year=>"1981"}}]}]
     details('Streptomyces parvisporogenes ignotus 1960').should == [{:genus=>{:string=>"Streptomyces"}, :species=>{:string=>"parvisporogenes"}, :infraspecies=>[{:string=>"ignotus", :rank=>"n/a", :year=>"1960"}]}]

data/spec/parser/test_data.txt

@@ -39,6 +39,13 @@ Qu Durkoop|{"scientificName":{"parsed":true, "parser_version":"test_version", "p
 As Slipinski 1982|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"As Slipinski 1982","normalized":"As Slipinski 1982","canonical":"As","hybrid":false,"details":[{"uninomial":{"string":"As","authorship":"Slipinski 1982","basionymAuthorTeam":{"authorTeam":"Slipinski","author":["Slipinski"],"year":"1982"}}}],"positions":{"0":["uninomial",2],"3":["author_word",12],"13":["year",17]}}}
 Ba Solem 1983|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ba Solem 1983","normalized":"Ba Solem 1983","canonical":"Ba","hybrid":false,"details":[{"uninomial":{"string":"Ba","authorship":"Solem 1983","basionymAuthorTeam":{"authorTeam":"Solem","author":["Solem"],"year":"1983"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
 
+#multi-uninomials
+Poaceae subtrib. Scolochloinae Soreng|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae subtrib. Scolochloinae Soreng", "normalized":"Poaceae subtrib. Scolochloinae Soreng", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"subtrib.", "uninomial2":{"string":"Scolochloinae", "authorship":"Soreng", "basionymAuthorTeam":{"authorTeam":"Soreng", "author":["Soreng"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 16], "17":["uninomial", 37]}}}
+Zygophyllaceae subfam. Tribuloideae D.M.Porter|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zygophyllaceae subfam. Tribuloideae D.M.Porter", "normalized":"Zygophyllaceae subfam. Tribuloideae D.M.Porter", "canonical":"Zygophyllaceae", "hybrid":false, "details":[{"uninomial":{"string":"Zygophyllaceae"}, "rank_uninomials":"subfam.", "uninomial2":{"string":"Tribuloideae", "authorship":"D.M.Porter", "basionymAuthorTeam":{"authorTeam":"D.M.Porter", "author":["D.M.Porter"]}}}], "parser_run":1, "positions":{"0":["uninomial", 14], "15":["rank_uninomial", 22], "23":["uninomial", 46]}}}
+Cordia (Adans.) Kuntze sect. Salimori|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cordia (Adans.) Kuntze sect. Salimori", "normalized":"Cordia (Adans.) Kuntze sect. Salimori", "canonical":"Cordia", "hybrid":false, "details":[{"uninomial":{"string":"Cordia", "authorship":"(Adans.) Kuntze", "combinationAuthorTeam":{"authorTeam":"Kuntze", "author":["Kuntze"]}, "basionymAuthorTeam":{"authorTeam":"Adans.", "author":["Adans."]}}, "rank_uninomials":"sect.", "uninomial2":{"string":"Salimori"}}], "parser_run":1, "positions":{"0":["uninomial", 6], "8":["author_word", 14], "16":["author_word", 22], "23":["rank_uninomial", 28], "29":["uninomial", 37]}}}
+Poaceae supertrib. Arundinarodae L.Liu|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae supertrib. Arundinarodae L.Liu", "normalized":"Poaceae supertrib. Arundinarodae L.Liu", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"supertrib.", "uninomial2":{"string":"Arundinarodae", "authorship":"L.Liu", "basionymAuthorTeam":{"authorTeam":"L.Liu", "author":["L.Liu"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 18], "19":["uninomial", 38]}}}
+Alchemilla subsect. Sericeae A.Plocek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alchemilla subsect. Sericeae A.Plocek", "normalized":"Alchemilla subsect. Sericeae A.Plocek", "canonical":"Alchemilla", "hybrid":false, "details":[{"uninomial":{"string":"Alchemilla"}, "rank_uninomials":"subsect.", "uninomial2":{"string":"Sericeae", "authorship":"A.Plocek", "basionymAuthorTeam":{"authorTeam":"A.Plocek", "author":["A.Plocek"]}}}], "parser_run":1, "positions":{"0":["uninomial", 10], "11":["rank_uninomial", 19], "20":["uninomial", 37]}}}
+
 #canonical binomial
 Pseudocercospora     dendrobii|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora     dendrobii","normalized":"Pseudocercospora dendrobii","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii"}}],"positions":{"0":["genus",16],"21":["species",30]}}}
 Cucurbita pepo|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cucurbita pepo", "normalized":"Cucurbita pepo", "canonical":"Cucurbita pepo", "hybrid":false, "details":[{"genus":{"string":"Cucurbita"}, "species":{"string":"pepo"}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14]}}}
@@ -52,9 +59,9 @@ Platypus bicaudatulus Schedl, 1935h|{"scientificName":{"parsed":true, "parser_ve
 #TODO Donatia novae-zelandiae Hook.f.
 
 #binomial with several authours
-Pseudocercospora dendrobii U. Braun & Crous|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous","normalized":"Pseudocercospora dendrobii U. Braun et Crous","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun & Crous","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43]}}}
-Pseudocercospora dendrobii U. Braun et Crous|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun et Crous","normalized":"Pseudocercospora dendrobii U. Braun et Crous","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun et Crous","basionymAuthorTeam":{"authorTeam":"U. Braun et Crous","author":["U. Braun","Crous"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"39":["author_word",44]}}}
-Pseudocercospora dendrobii U. Braun and Crous|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun and Crous","normalized":"Pseudocercospora dendrobii U. Braun et Crous","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun and Crous","basionymAuthorTeam":{"authorTeam":"U. Braun and Crous","author":["U. Braun","Crous"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"40":["author_word",45]}}}
+Pseudocercospora dendrobii Goh & W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh & W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh & W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "33":["author_word", 37], "38":["author_word", 43], "44":["year", 48]}}}
+Pseudocercospora dendrobii Goh and W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh and W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh and W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh and W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "35":["author_word", 39], "40":["author_word", 45], "46":["year", 50]}}}
+Pseudocercospora dendrobii Goh et W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh et W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh et W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "34":["author_word", 38], "39":["author_word", 44], "45":["year", 49]}}}
 Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "normalized":"Schottera nicaeensis (J.V. Lamouroux ex Duby) Guiry et Hollenberg", "canonical":"Schottera nicaeensis", "hybrid":false, "details":[{"genus":{"string":"Schottera"}, "species":{"string":"nicaeensis", "authorship":"(J.V. Lamouroux ex Duby) Guiry & Hollenberg", "combinationAuthorTeam":{"authorTeam":"Guiry & Hollenberg", "author":["Guiry", "Hollenberg"]}, "basionymAuthorTeam":{"authorTeam":"J.V. Lamouroux", "author":["J.V. Lamouroux"], "exAuthorTeam":{"authorTeam":"Duby", "author":["Duby"]}}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 20], "22":["author_word", 26], "27":["author_word", 36], "40":["author_word", 44], "46":["author_word", 51], "54":["author_word", 64]}}}
 Hirsutëlla mâle|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hirsutëlla mâle", "normalized":"Hirsutella male", "canonical":"Hirsutella male", "hybrid":false, "details":[{"genus":{"string":"Hirsutella"}, "species":{"string":"male"}}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 15]}}}
 Triticum repens vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens vulgäre", "normalized":"Triticum repens vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecies", 23]}}}
@@ -65,6 +72,7 @@ Aëtosaurus ferratus|{"scientificName":{"parsed":true, "parser_version":"test_ve
 Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun & Crous 2003","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43],"44":["year",48]}}}
 
 #iczn: species name with infragenus
+Hegeter (Hegeter) tenuipunctatus Brullé, 1838|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hegeter (Hegeter) tenuipunctatus Brullé, 1838", "normalized":"Hegeter (Hegeter) tenuipunctatus Brullé 1838", "canonical":"Hegeter tenuipunctatus", "hybrid":false, "details":[{"genus":{"string":"Hegeter"}, "infragenus":{"string":"Hegeter"}, "species":{"string":"tenuipunctatus", "authorship":"Brullé, 1838", "basionymAuthorTeam":{"authorTeam":"Brullé", "author":["Brullé"], "year":"1838"}}}], "parser_run":1, "positions":{"0":["genus", 7], "9":["infragenus", 16], "18":["species", 32], "33":["author_word", 39], "41":["year", 45]}}}
 Hegeter (Hegeter) intercedens Lindberg H 1950|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hegeter (Hegeter) intercedens Lindberg H 1950","normalized":"Hegeter (Hegeter) intercedens Lindberg H 1950","canonical":"Hegeter intercedens","hybrid":false,"details":[{"genus":{"string":"Hegeter"},"infragenus":{"string":"Hegeter"},"species":{"string":"intercedens","authorship":"Lindberg H 1950","basionymAuthorTeam":{"authorTeam":"Lindberg H","author":["Lindberg H"],"year":"1950"}}}],"positions":{"0":["genus",7],"9":["infragenus",16],"18":["species",29],"30":["author_word",38],"39":["author_word",40],"41":["year",45]}}}
 Brachytrypus (B.) grandidieri|{"scientificName":{"parsed":true, "verbatim":"Brachytrypus (B.) grandidieri", "normalized":"Brachytrypus (B.) grandidieri", "canonical":"Brachytrypus grandidieri", "hybrid":false, "details":[{"genus":{"string":"Brachytrypus"}, "infragenus":{"string":"B."}, "species":{"string":"grandidieri"}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 12], "14":["infragenus", 16], "18":["species", 29]}}}
 Cyprideis (Cyprideis) thessalonike amasyaensis|{"scientificName":{"parsed":true, "verbatim":"Cyprideis (Cyprideis) thessalonike amasyaensis", "normalized":"Cyprideis (Cyprideis) thessalonike amasyaensis", "canonical":"Cyprideis thessalonike amasyaensis", "hybrid":false, "details":[{"genus":{"string":"Cyprideis"}, "infragenus":{"string":"Cyprideis"}, "species":{"string":"thessalonike"}, "infraspecies":[{"string":"amasyaensis", "rank":"n/a"}]}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 9], "11":["infragenus", 20], "22":["species", 34], "35":["infraspecies", 46]}}}
@@ -78,7 +86,10 @@ Sténométope laevissimus Bibron 1855|{"scientificName":{"parsed":true, "parser_
 Choriozopella trägårdhi Lawrence, 1947|{"scientificName":{"parsed":true, "verbatim":"Choriozopella trägårdhi Lawrence, 1947", "normalized":"Choriozopella tragardhi Lawrence 1947", "canonical":"Choriozopella tragardhi", "hybrid":false, "details":[{"genus":{"string":"Choriozopella"}, "species":{"string":"tragardhi", "authorship":"Lawrence, 1947", "basionymAuthorTeam":{"authorTeam":"Lawrence", "author":["Lawrence"], "year":"1947"}}}],  "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 13], "14":["species", 23], "24":["author_word", 32], "34":["year", 38]}}}
 Isoëtes asplundii H. P. Fuchs|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Isoëtes asplundii H. P. Fuchs", "normalized":"Isoetes asplundii H. P. Fuchs", "canonical":"Isoetes asplundii", "hybrid":false, "details":[{"genus":{"string":"Isoetes"}, "species":{"string":"asplundii", "authorship":"H. P. Fuchs", "basionymAuthorTeam":{"authorTeam":"H. P. Fuchs", "author":["H. P. Fuchs"]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "18":["author_word", 20], "21":["author_word", 23], "24":["author_word", 29]}}}
 Cerambyx thomæ GMELIN J. F., 1790|{"scientificName":{"parsed":true, "verbatim":"Cerambyx thomæ GMELIN J. F., 1790", "normalized":"Cerambyx thomae GMELIN J. F. 1790", "canonical":"Cerambyx thomae", "hybrid":false, "details":[{"genus":{"string":"Cerambyx"}, "species":{"string":"thomae", "authorship":"GMELIN J. F., 1790", "basionymAuthorTeam":{"authorTeam":"GMELIN J. F.", "author":["GMELIN J. F."], "year":"1790"}}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 14], "15":["author_word", 21], "22":["author_word", 24], "25":["author_word", 27], "29":["year", 33]}}}
+#Campethera cailliautii fülleborni|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
+
 #digraph unicode characters
+Æschopalæa grisella Pascoe, 1864|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Æschopalæa grisella Pascoe, 1864", "normalized":"Aeschopalaea grisella Pascoe 1864", "canonical":"Aeschopalaea grisella", "hybrid":false, "details":[{"genus":{"string":"Aeschopalaea"}, "species":{"string":"grisella", "authorship":"Pascoe, 1864", "basionymAuthorTeam":{"authorTeam":"Pascoe", "author":["Pascoe"], "year":"1864"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 19], "20":["author_word", 26], "28":["year", 32]}}}
 Læptura laetifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"L\u00e6ptura laetifica Dow, 1913","normalized":"Laeptura laetifica Dow 1913","canonical":"Laeptura laetifica","hybrid":false,"details":[{"genus":{"string":"Laeptura"},"species":{"string":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
 Leptura lætifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Leptura l\u00e6tifica Dow, 1913","normalized":"Leptura laetifica Dow 1913","canonical":"Leptura laetifica","hybrid":false,"details":[{"genus":{"string":"Leptura"},"species":{"string":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",20],"22":["year",26]}}}
 Leptura leætifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Leptura le\u00e6tifica Dow, 1913","normalized":"Leptura leaetifica Dow 1913","canonical":"Leptura leaetifica","hybrid":false,"details":[{"genus":{"string":"Leptura"},"species":{"string":"leaetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
@@ -88,25 +99,33 @@ Leœptura laetifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version"
 Œdicnemus capensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u0152dicnemus capensis","normalized":"Oedicnemus capensis","canonical":"Oedicnemus capensis","hybrid":false,"details":[{"genus":{"string":"Oedicnemus"},"species":{"string":"capensis"}}],"positions":{"0":["genus",9],"10":["species",18]}}}
 Œnanthe œnanthe|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u0152nanthe \u0153nanthe","normalized":"Oenanthe oenanthe","canonical":"Oenanthe oenanthe","hybrid":false,"details":[{"genus":{"string":"Oenanthe"},"species":{"string":"oenanthe"}}],"positions":{"0":["genus",7],"8":["species",15]}}}
 Hördeum vulgare cœrulescens|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hördeum vulgare cœrulescens", "normalized":"Hordeum vulgare coerulescens", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecies", 27]}}}
+Hordeum vulgare cœrulescens Metzger|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hordeum vulgare cœrulescens Metzger", "normalized":"Hordeum vulgare coerulescens Metzger", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"n/a", "authorship":"Metzger", "basionymAuthorTeam":{"authorTeam":"Metzger", "author":["Metzger"]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecies", 27], "28":["author_word", 35]}}}
 Hordeum vulgare f. cœrulescens|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hordeum vulgare f. cœrulescens", "normalized":"Hordeum vulgare f. coerulescens", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"f."}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecific_type", 18], "19":["infraspecies", 30]}}}
 
 # old style s (ſ)
 Musca domeſtica Linnaeus 1758 sec. Pemberton 1947|{"scientificName":{"parsed":true, "verbatim":"Musca domeſtica Linnaeus 1758 sec. Pemberton 1947", "normalized":"Musca domestica Linnaeus 1758", "canonical":"Musca domestica", "hybrid":false, "details":[{"genus":{"string":"Musca"}, "species":{"string":"domestica", "authorship":"Linnaeus 1758", "basionymAuthorTeam":{"authorTeam":"Linnaeus", "author":["Linnaeus"], "year":"1758"}}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15], "16":["author_word", 24], "25":["year", 29]}}}
+Amphisbæna fuliginoſa Linnaeus 1758|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amphisbæna fuliginoſa Linnaeus 1758", "normalized":"Amphisbaena fuliginosa Linnaeus 1758", "canonical":"Amphisbaena fuliginosa", "hybrid":false, "details":[{"genus":{"string":"Amphisbaena"}, "species":{"string":"fuliginosa", "authorship":"Linnaeus 1758", "basionymAuthorTeam":{"authorTeam":"Linnaeus", "author":["Linnaeus"], "year":"1758"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 30], "31":["year", 35]}}}
 
-#basionym in parenthesis
+#basionym author in parenthesis
 Zophosis persis (Chatanay, 1914)|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay, 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay, 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"27":["year",31]}}}
 Zophosis persis (Chatanay 1914)|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"26":["year",30]}}}
 Zophosis persis (Chatanay), 1914|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay), 1914","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay), 1914","basionymAuthorTeam":{"author_team":"(Chatanay), 1914","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"28":["year",32]}}}
+Zophosis quadrilineata (Oliv. )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zophosis quadrilineata (Oliv. )", "normalized":"Zophosis quadrilineata (Oliv.)", "canonical":"Zophosis quadrilineata", "hybrid":false, "details":[{"genus":{"string":"Zophosis"}, "species":{"string":"quadrilineata", "authorship":"(Oliv. )", "basionymAuthorTeam":{"authorTeam":"Oliv.", "author":["Oliv."]}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 22], "24":["author_word", 29]}}}
+Zophosis quadrilineata (Olivier 1795)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zophosis quadrilineata (Olivier 1795)", "normalized":"Zophosis quadrilineata (Olivier 1795)", "canonical":"Zophosis quadrilineata", "hybrid":false, "details":[{"genus":{"string":"Zophosis"}, "species":{"string":"quadrilineata", "authorship":"(Olivier 1795)", "basionymAuthorTeam":{"authorTeam":"Olivier", "author":["Olivier"], "year":"1795"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 22], "24":["author_word", 31], "32":["year", 36]}}}
 
 #binomial with basionym and combination authors
 Pseudocercospora dendrobii(H.C.     Burnett)U. Braun & Crous     2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C.     Burnett)U. Braun & Crous     2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett) U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C.     Burnett)U. Braun & Crous     2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C.     Burnett","author":["H.C. Burnett"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["author_word",46],"47":["author_word",52],"55":["author_word",60],"65":["year",69]}}}
 Pseudocercospora dendrobii(H.C.     Burnett, 1873)U. Braun & Crous     2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C.     Burnett, 1873)U. Braun & Crous     2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C.     Burnett, 1873)U. Braun & Crous     2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C.     Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"45":["year",49],"50":["author_word",52],"53":["author_word",58],"61":["author_word",66],"71":["year",75]}}}
 Pseudocercospora dendrobii(H.C.     Burnett 1873)U. Braun & Crous ,    2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C.     Burnett 1873)U. Braun & Crous ,    2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun et Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C.     Burnett 1873)U. Braun & Crous ,    2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C.     Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["year",48],"49":["author_word",51],"52":["author_word",57],"60":["author_word",65],"71":["year",75]}}}
+Sedella pumila (Benth.) Britton & Rose|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sedella pumila (Benth.) Britton & Rose", "normalized":"Sedella pumila (Benth.) Britton et Rose", "canonical":"Sedella pumila", "hybrid":false, "details":[{"genus":{"string":"Sedella"}, "species":{"string":"pumila", "authorship":"(Benth.) Britton & Rose", "combinationAuthorTeam":{"authorTeam":"Britton & Rose", "author":["Britton", "Rose"]}, "basionymAuthorTeam":{"authorTeam":"Benth.", "author":["Benth."]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 14], "16":["author_word", 22], "24":["author_word", 31], "34":["author_word", 38]}}}
 
 #infraspecies without rank
+Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "normalized":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "canonical":"Hydnellum scrobiculatum zonatum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"n/a", "authorship":"(Batsch) K. A. Harrison 1961", "combinationAuthorTeam":{"authorTeam":"K. A. Harrison", "author":["K. A. Harrison"], "year":"1961"}, "basionymAuthorTeam":{"authorTeam":"Batsch", "author":["Batsch"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecies", 31], "33":["author_word", 39], "41":["author_word", 43], "44":["author_word", 46], "47":["author_word", 55], "56":["year", 60]}}}
 Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum scrobiculatum zonatum (Banker) D. Hall et D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31],"33":["author_word",39],"41":["author_word",43],"44":["author_word",48],"51":["author_word",55],"56":["author_word",62],"63":["year",67]}}}
 Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall et D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"infragenus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"11":["infragenus",20],"22":["species",35],"36":["infraspecies",43],"45":["author_word",51],"53":["author_word",55],"56":["author_word",60],"63":["author_word",67],"68":["author_word",74],"75":["year",79]}}}
 Hydnellum scrobiculatum zonatum|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum","normalized":"Hydnellum scrobiculatum zonatum","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a"}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31]}}}
+Mus musculus hortulanus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mus musculus hortulanus", "normalized":"Mus musculus hortulanus", "canonical":"Mus musculus hortulanus", "hybrid":false, "details":[{"genus":{"string":"Mus"}, "species":{"string":"musculus"}, "infraspecies":[{"string":"hortulanus", "rank":"n/a"}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 12], "13":["infraspecies", 23]}}}
+Ortygospiza atricollis mülleri|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Ortygospiza atricollis mülleri", "normalized":"Ortygospiza atricollis mulleri", "canonical":"Ortygospiza atricollis mulleri", "hybrid":false, "details":[{"genus":{"string":"Ortygospiza"}, "species":{"string":"atricollis"}, "infraspecies":[{"string":"mulleri", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 22], "23":["infraspecies", 30]}}}
 
 #infraspecies with rank
 Aus bus Linn. var. bus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aus bus Linn. var. bus", "normalized":"Aus bus Linn. var. bus", "canonical":"Aus bus bus", "hybrid":false, "details":[{"genus":{"string":"Aus"}, "species":{"string":"bus", "authorship":"Linn.", "basionymAuthorTeam":{"authorTeam":"Linn.", "author":["Linn."]}}, "infraspecies":[{"string":"bus", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 7], "8":["author_word", 13], "14":["infraspecific_type", 18], "19":["infraspecies", 22]}}}
@@ -125,18 +144,21 @@ Polypodium pectinatum L.f. typica Rosenst.|{"scientificName":{"parsed":true, "pa
 Polypodium pectinatum L. f. thisisjunk Rosent.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. thisisjunk Rosent.", "normalized":"Polypodium pectinatum L. f. thisisjunk Rosent.", "canonical":"Polypodium pectinatum thisisjunk", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"thisisjunk", "rank":"f.", "authorship":"Rosent.", "basionymAuthorTeam":{"authorTeam":"Rosent.", "author":["Rosent."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 38], "39":["author_word", 46]}}}
 Polypodium lineare C.Chr. f. caudatoattenuatum Takeda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "normalized":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "canonical":"Polypodium lineare caudatoattenuatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"lineare", "authorship":"C.Chr.", "basionymAuthorTeam":{"authorTeam":"C.Chr.", "author":["C.Chr."]}}, "infraspecies":[{"string":"caudatoattenuatum", "rank":"f.", "authorship":"Takeda", "basionymAuthorTeam":{"authorTeam":"Takeda", "author":["Takeda"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "19":["author_word", 25], "26":["infraspecific_type", 28], "29":["infraspecies", 46], "47":["author_word", 53]}}}
 Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "normalized":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "canonical":"Rhododendron weyrichii albiflorum", "hybrid":false, "details":[{"genus":{"string":"Rhododendron"}, "species":{"string":"weyrichii", "authorship":"Maxim.", "basionymAuthorTeam":{"authorTeam":"Maxim.", "author":["Maxim."]}}, "infraspecies":[{"string":"albiflorum", "rank":"f.", "authorship":"T.Yamaz.", "basionymAuthorTeam":{"authorTeam":"T.Yamaz.", "author":["T.Yamaz."]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 22], "23":["author_word", 29], "30":["infraspecific_type", 32], "33":["infraspecies", 43], "44":["author_word", 52]}}}
+Armeria maaritima (Mill.) Willd. fma. originaria Bern.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "normalized":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "canonical":"Armeria maaritima originaria", "hybrid":false, "details":[{"genus":{"string":"Armeria"}, "species":{"string":"maaritima", "authorship":"(Mill.) Willd.", "combinationAuthorTeam":{"authorTeam":"Willd.", "author":["Willd."]}, "basionymAuthorTeam":{"authorTeam":"Mill.", "author":["Mill."]}}, "infraspecies":[{"string":"originaria", "rank":"fma.", "authorship":"Bern.", "basionymAuthorTeam":{"authorTeam":"Bern.", "author":["Bern."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 24], "26":["author_word", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 48], "49":["author_word", 54]}}}
+Cotoneaster (Pyracantha) rogersiana var.aurantiaca|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cotoneaster (Pyracantha) rogersiana var.aurantiaca", "normalized":"Cotoneaster (Pyracantha) rogersiana var. aurantiaca", "canonical":"Cotoneaster rogersiana aurantiaca", "hybrid":false, "details":[{"genus":{"string":"Cotoneaster"}, "infragenus":{"string":"Pyracantha"}, "species":{"string":"rogersiana"}, "infraspecies":[{"string":"aurantiaca", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 11], "13":["infragenus", 23], "25":["species", 35], "36":["infraspecific_type", 40], "40":["infraspecies", 50]}}}
+#TODO: Homalanthus nutans (Mull.Arg.) Benth. & Hook. f. ex Drake|{}
 
 #infraspecies_multiple
 Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "normalized":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall et D.E. Stuntz 1972", "canonical":"Hydnellum scrobiculatum zonatum parvum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"var."}, {"string":"parvum", "rank":"f.", "authorship":"(Banker) D. Hall & D.E. Stuntz 1972", "combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz", "author":["D. Hall", "D.E. Stuntz"], "year":"1972"}, "basionymAuthorTeam":{"authorTeam":"Banker", "author":["Banker"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["infraspecific_type", 39], "40":["infraspecies", 46], "48":["author_word", 54], "56":["author_word", 58], "59":["author_word", 63], "66":["author_word", 70], "71":["author_word", 77], "78":["year", 82]}}}
 Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. et Heldr.) Hayek", "canonical":"Senecio fuchsii fuchsii expansus", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"fuchsii", "authorship":"C.C.Gmel.", "basionymAuthorTeam":{"authorTeam":"C.C.Gmel.", "author":["C.C.Gmel."]}}, "infraspecies":[{"string":"fuchsii", "rank":"subsp."}, {"string":"expansus", "rank":"var.", "authorship":"(Boiss. & Heldr.) Hayek", "combinationAuthorTeam":{"authorTeam":"Hayek", "author":["Hayek"]}, "basionymAuthorTeam":{"authorTeam":"Boiss. & Heldr.", "author":["Boiss.", "Heldr."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["author_word", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 40], "41":["infraspecific_type", 45], "46":["infraspecies", 54], "56":["author_word", 62], "65":["author_word", 71], "73":["author_word", 78]}}}
 Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii", "canonical":"Senecio fuchsii fuchsii fuchsii", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"fuchsii", "authorship":"C.C.Gmel.", "basionymAuthorTeam":{"authorTeam":"C.C.Gmel.", "author":["C.C.Gmel."]}}, "infraspecies":[{"string":"fuchsii", "rank":"subsp."}, {"string":"fuchsii", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["author_word", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 40], "41":["infraspecific_type", 45], "46":["infraspecies", 53]}}}
-
+Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott", "normalized":"Euastrum divergens var. rhodesiense f. coronulum A.M. Scott et Prescott", "canonical":"Euastrum divergens rhodesiense coronulum", "hybrid":false, "details":[{"genus":{"string":"Euastrum"}, "species":{"string":"divergens"}, "infraspecies":[{"string":"rhodesiense", "rank":"var."}, {"string":"coronulum", "rank":"f.", "authorship":"A.M. Scott & Prescott", "basionymAuthorTeam":{"authorTeam":"A.M. Scott & Prescott", "author":["A.M. Scott", "Prescott"]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["infraspecific_type", 23], "24":["infraspecies", 35], "36":["infraspecific_type", 38], "39":["infraspecies", 48], "49":["author_word", 53], "54":["author_word", 59], "62":["author_word", 70]}}}
 
 #species and infraspecies without epithets, comparisons
-Alviniconcha aff alba|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alviniconcha aff alba", "normalized":"Alviniconcha", "canonical":"Alviniconcha", "hybrid":false, "details":[{"uninomial":{"string":"Alviniconcha"}}], "parser_run":1, "positions":{"0":["uninomial", 12]}}}
-Alviniconcha aff. alba|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alviniconcha aff. alba", "normalized":"Alviniconcha", "canonical":"Alviniconcha", "hybrid":false, "details":[{"uninomial":{"string":"Alviniconcha"}}], "parser_run":1, "positions":{"0":["uninomial", 12]}}}
-Alviniconcha cf. alba|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alviniconcha cf. alba", "normalized":"Alviniconcha alba", "canonical":"Alviniconcha alba", "hybrid":false, "details":[{"genus":{"string":"Alviniconcha"}, "species":{"string":"alba"}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 17]}}}
-Alviniconcha cf alba|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alviniconcha cf alba", "normalized":"Alviniconcha alba", "canonical":"Alviniconcha alba", "hybrid":false, "details":[{"genus":{"string":"Alviniconcha"}, "species":{"string":"alba"}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 17]}}}
+Acarinina aff. pentacamerata|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acarinina aff. pentacamerata", "normalized":"Acarinina", "canonical":"Acarinina", "hybrid":false, "details":[{"genus":{"string":"Acarinina"}, "annotation_identification":"aff.", "ignored":{"species":{"string":"pentacamerata"}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["annotation_identification", 14]}}}
+Acarinina aff pentacamerata|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acarinina aff pentacamerata", "normalized":"Acarinina", "canonical":"Acarinina", "hybrid":false, "details":[{"genus":{"string":"Acarinina"}, "annotation_identification":"aff", "ignored":{"species":{"string":"pentacamerata"}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["annotation_identification", 14]}}}
+Abturia cf. alabamensis (Morton )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abturia cf. alabamensis (Morton )", "normalized":"Abturia cf. alabamensis (Morton)", "canonical":"Abturia alabamensis", "hybrid":false, "details":[{"genus":{"string":"Abturia"}, "annotation_identification":"cf.", "species":{"species":{"string":"alabamensis", "authorship":"(Morton )", "basionymAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["annotation_identification", 11], "12":["species", 23], "25":["author_word", 31]}}}
+Abturia cf alabamensis (Morton )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abturia cf alabamensis (Morton )", "normalized":"Abturia cf alabamensis (Morton)", "canonical":"Abturia alabamensis", "hybrid":false, "details":[{"genus":{"string":"Abturia"}, "annotation_identification":"cf", "species":{"species":{"string":"alabamensis", "authorship":"(Morton )", "basionymAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["annotation_identification", 11], "11":["species", 22], "24":["author_word", 30]}}}
 Alyxia reinwardti var|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti var", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
 Alyxia reinwardti var.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti var.", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
 Alyxia reinwardti ssp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti ssp", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
@@ -147,7 +169,11 @@ Xenodon sp|{"scientificName":{"parsed":true, "parser_version":"test_version", "v
 Xenodon sp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Xenodon sp.", "normalized":"Xenodon", "canonical":"Xenodon", "hybrid":false, "details":[{"uninomial":{"string":"Xenodon"}}], "parser_run":1, "positions":{"0":["uninomial", 7]}}}
 Formicidae cf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Formicidae cf.", "normalized":"Formicidae", "canonical":"Formicidae", "hybrid":false, "details":[{"uninomial":{"string":"Formicidae"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
 Formicidae cf|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Formicidae cf", "normalized":"Formicidae", "canonical":"Formicidae", "hybrid":false, "details":[{"uninomial":{"string":"Formicidae"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
-
+Acastoides spp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acastoides spp.", "normalized":"Acastoides", "canonical":"Acastoides", "hybrid":false, "details":[{"uninomial":{"string":"Acastoides"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
+Sphingomonas sp. 37|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sphingomonas sp. 37", "normalized":"Sphingomonas", "canonical":"Sphingomonas", "hybrid":false, "details":[{"genus":{"string":"Sphingomonas"}, "annotation_identification":"sp.", "ignored":{"unparsed":"37"}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["annotation_identification", 16]}}}
+Thryothorus leucotis spp. bogotensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Thryothorus leucotis spp. bogotensis", "normalized":"Thryothorus leucotis", "canonical":"Thryothorus leucotis", "hybrid":false, "details":[{"genus":{"string":"Thryothorus"}, "species":{"string":"leucotis"}, "infraspecies":[{"annotation_identification":"spp.", "ignored":{"infraspecies":{"string":"bogotensis", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["annotation_identification", 25]}}}
+Endoxyla sp. GM-, 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
+Liopropoma sp.2 Not applicable|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Liopropoma sp.2 Not applicable", "normalized":"Liopropoma", "canonical":"Liopropoma", "hybrid":false, "details":[{"genus":{"string":"Liopropoma"}, "annotation_identification":"sp.", "ignored":{"unparsed":"2 Not applicable"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["annotation_identification", 14]}}}
 
 #unknown authorship
 Tragacantha leporina (?) Kuntze|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Tragacantha leporina (?) Kuntze","normalized":"Tragacantha leporina (?) Kuntze","canonical":"Tragacantha leporina","hybrid":false,"details":[{"genus":{"string":"Tragacantha"},"species":{"string":"leporina","authorship":"(?) Kuntze","combinationAuthorTeam":{"authorTeam":"Kuntze","author":["Kuntze"]},"basionymAuthorTeam":{"authorTeam":"(?)","author":["?"]}}}],"positions":{"0":["genus",11],"12":["species",20],"22":["unknown_author",23],"25":["author_word",31]}}}
@@ -219,6 +245,7 @@ Arthopyrenia hyalospora x|{"scientificName":{"parsed":true, "parser_version":"te
 Arthopyrenia hyalospora × ?|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora \u00d7 ?","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
 Agrostis L. × Polypogon Desf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agrostis L. \u00d7 Polypogon Desf.","normalized":"Agrostis L. \u00d7 Polypogon Desf.","canonical":"Agrostis × Polypogon","hybrid":true,"details":[{"uninomial":{"string":"Agrostis","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"uninomial":{"string":"Polypogon","authorship":"Desf.","basionymAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]}}}],"positions":{"0":["uninomial",8],"9":["author_word",11],"14":["uninomial",23],"24":["author_word",29]}}}
 Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","normalized":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","canonical":"Agrostis stolonifera × Polypogon monspeliensis","hybrid":true,"details":[{"genus":{"string":"Agrostis"},"species":{"string":"stolonifera","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"genus":{"string":"Polypogon"},"species":{"string":"monspeliensis","authorship":"(L.) Desf.","combinationAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]},"basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"26":["genus",35],"36":["species",49],"51":["author_word",53],"55":["author_word",60]}}}
+Coeloglossum viride (L.) Hartman x Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Coeloglossum viride (L.) Hartman x Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó", "normalized":"Coeloglossum viride (L.) Hartman × Dactylorhiza majalis (Rchb. f.) P.F. Hunt et Summerhayes ssp. praetermissa (Druce) D.M. Moore et Soó", "canonical":"Coeloglossum viride × Dactylorhiza majalis praetermissa", "hybrid":true, "details":[{"genus":{"string":"Coeloglossum"}, "species":{"string":"viride", "authorship":"(L.) Hartman", "combinationAuthorTeam":{"authorTeam":"Hartman", "author":["Hartman"]}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}}, {"genus":{"string":"Dactylorhiza"}, "species":{"string":"majalis", "authorship":"(Rchb. f.) P.F. Hunt & Summerhayes", "combinationAuthorTeam":{"authorTeam":"P.F. Hunt & Summerhayes", "author":["P.F. Hunt", "Summerhayes"]}, "basionymAuthorTeam":{"authorTeam":"Rchb. f.", "author":["Rchb. f."]}}, "infraspecies":[{"string":"praetermissa", "rank":"ssp.", "authorship":"(Druce) D.M. Moore & Soó", "combinationAuthorTeam":{"authorTeam":"D.M. Moore & Soó", "author":["D.M. Moore", "Soó"]}, "basionymAuthorTeam":{"authorTeam":"Druce", "author":["Druce"]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 19], "21":["author_word", 23], "25":["author_word", 32], "35":["genus", 47], "48":["species", 55], "57":["author_word", 62], "63":["author_word", 65], "67":["author_word", 71], "72":["author_word", 76], "79":["author_word", 90], "91":["infraspecific_type", 95], "96":["infraspecies", 108], "110":["author_word", 115], "117":["author_word", 121], "122":["author_word", 127], "130":["author_word", 133]}}}
 #TODO Asplenium rhizophyllum X A. ruta-muraria E.L. Braun 1939|''
 #TODO Asplenium rhizophyllum DC. x ruta-muraria E.L. Braun 1939|''
 #TODO Asplenium rhizophyllum x ruta-muraria|''
@@ -229,8 +256,7 @@ Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":
 Polypodium  x vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium  x vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "normalized":"Polypodium × vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "canonical":"Polypodium vulgare mantoniae", "hybrid":true, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"mantoniae", "rank":"nothosubsp.", "authorship":"(Rothm.) Schidlay", "combinationAuthorTeam":{"authorTeam":"Schidlay", "author":["Schidlay"]}, "basionymAuthorTeam":{"authorTeam":"Rothm.", "author":["Rothm."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "14":["species", 21], "22":["infraspecific_type", 33], "34":["infraspecies", 43], "45":["author_word", 51], "53":["author_word", 61]}}}
 
 #empty spaces
-   Asplenium         Xinexpectatum ( E.L.      Braun   1940 )     Morton(1956)   |{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"   Asplenium         Xinexpectatum ( E.L.      Braun   1940 )     Morton(1956)   ","normalized":"Asplenium \u00d7 inexpectatum (E.L. Braun 1940) Morton 1956","canonical":"Asplenium inexpectatum","hybrid":true,"details":[{"genus":{"string":"Asplenium"},"species":{"string":"inexpectatum","authorship":"( E.L.      Braun   1940 )     Morton(1956)","combinationAuthorTeam":{"authorTeam":"Morton","author":["Morton"],"year":"1956"},"basionymAuthorTeam":{"authorTeam":"E.L.      Braun","author":["E.L. Braun"],"year":"1940"}}}],"positions":{"3":["genus",12],"22":["species",34],"37":["author_word",41],"47":["author_word",52],"55":["year",59],"66":["author_word",72],"73":["year",77]}}}
-   
+    Asplenium       Xinexpectatum(E. L. Braun ex Friesner      )Morton   |{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"    Asplenium       Xinexpectatum(E. L. Braun ex Friesner      )Morton   ", "normalized":"Asplenium × inexpectatum (E. L. Braun ex Friesner) Morton", "canonical":"Asplenium inexpectatum", "hybrid":true, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"inexpectatum", "authorship":"(E. L. Braun ex Friesner      )Morton", "combinationAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}, "basionymAuthorTeam":{"authorTeam":"E. L. Braun", "author":["E. L. Braun"], "exAuthorTeam":{"authorTeam":"Friesner", "author":["Friesner"]}}}}], "parser_run":1, "positions":{"4":["genus", 13], "21":["species", 33], "34":["author_word", 36], "37":["author_word", 39], "40":["author_word", 45], "49":["author_word", 57], "64":["author_word", 70]}}}
    
 ####
 #
@@ -238,7 +264,7 @@ Polypodium  x vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":
 #
 ####
 
-#removing english notes
+#removing annotations
 Acarospora cratericola cratericola Shenk 1974 group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
 Acarospora cratericola cratericola Shenk 1974 species group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
 Acarospora cratericola cratericola Shenk 1974 species complex|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species complex", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
@@ -268,7 +294,8 @@ Abarema clypearia (Jack) Kosterm., p.p.|{"scientificName":{"parsed":true, "verba
 Abarema clypearia (Jack) Kosterm., p. p.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., p. p.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
 Indigofera phyllogramme var. aphylla R.Vig., p.p.B|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Indigofera phyllogramme var. aphylla R.Vig., p.p.B", "normalized":"Indigofera phyllogramme var. aphylla R.Vig.", "canonical":"Indigofera phyllogramme aphylla", "hybrid":false, "details":[{"genus":{"string":"Indigofera"}, "species":{"string":"phyllogramme"}, "infraspecies":[{"string":"aphylla", "rank":"var.", "authorship":"R.Vig.", "basionymAuthorTeam":{"authorTeam":"R.Vig.", "author":["R.Vig."]}}]}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["author_word", 43]}}} 
 
-#removing nomenclatural concepts
+#removing nomenclatural annotations
+Amphiprora pseudoduplex (Osada & Kobayasi, 1990) comb. nov.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amphiprora pseudoduplex (Osada & Kobayasi, 1990) comb. nov.", "normalized":"Amphiprora pseudoduplex (Osada et Kobayasi 1990)", "canonical":"Amphiprora pseudoduplex", "hybrid":false, "details":[{"genus":{"string":"Amphiprora"}, "species":{"string":"pseudoduplex", "authorship":"(Osada & Kobayasi, 1990)", "basionymAuthorTeam":{"authorTeam":"Osada & Kobayasi", "author":["Osada", "Kobayasi"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 23], "25":["author_word", 30], "33":["author_word", 41], "43":["year", 47]}}}
 Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.|{"scientificName":{"parsed":true, "verbatim":"Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.", "normalized":"Arthopyrenia hyalospora (Nyl.) R.C. Harris", "canonical":"Arthopyrenia hyalospora", "hybrid":false, "details":[{"genus":{"string":"Arthopyrenia"}, "species":{"string":"hyalospora", "authorship":"(Nyl.) R.C. Harris", "combinationAuthorTeam":{"authorTeam":"R.C. Harris", "author":["R.C. Harris"]}, "basionymAuthorTeam":{"authorTeam":"Nyl.", "author":["Nyl."]}}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 23], "25":["author_word", 29], "31":["author_word", 35], "36":["author_word", 42]}}}
 Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)|{"scientificName":{"parsed":true, "verbatim":"Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)", "normalized":"Acanthophis lancasteri WELLS et WELLINGTON", "canonical":"Acanthophis lancasteri", "hybrid":false, "details":[{"genus":{"string":"Acanthophis"}, "species":{"string":"lancasteri", "authorship":"WELLS & WELLINGTON", "basionymAuthorTeam":{"authorTeam":"WELLS & WELLINGTON", "author":["WELLS", "WELLINGTON"]}}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 22], "23":["author_word", 28], "31":["author_word", 41]}}}
 Acontias lineatus WAGLER 1830: 196 (nomen nudum)|{"scientificName":{"parsed":true, "verbatim":"Acontias lineatus WAGLER 1830: 196 (nomen nudum)", "normalized":"Acontias lineatus WAGLER 1830", "canonical":"Acontias lineatus", "hybrid":false, "details":[{"genus":{"string":"Acontias"}, "species":{"string":"lineatus", "authorship":"WAGLER 1830: 196", "basionymAuthorTeam":{"authorTeam":"WAGLER", "author":["WAGLER"], "year":"1830"}}}],  "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 17], "18":["author_word", 24], "25":["year", 29]}}}
@@ -308,8 +335,10 @@ Eichornia crassipes ( (Martius) ) Solms-Laub.|{"scientificName":{"parsed":true,
 
 #year without authorship
 Acarospora cratericola 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Acarospora cratericola 1929","normalized":"Acarospora cratericola 1929","canonical":"Acarospora cratericola","hybrid":false,"details":[{"genus":{"string":"Acarospora"},"species":{"string":"cratericola","year":"1929"}}],"positions":{"0":["genus",10],"11":["species",22],"23":["year",27]}}}
+Goggia gemmula 1996|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Goggia gemmula 1996", "normalized":"Goggia gemmula 1996", "canonical":"Goggia gemmula", "hybrid":false, "details":[{"genus":{"string":"Goggia"}, "species":{"string":"gemmula", "year":"1996"}}], "parser_run":2, "positions":{"0":["genus", 6], "7":["species", 14], "15":["year", 19]}}}
 
 #authorship with filius (son of)
+Oxytropis minjanensis Rech. f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Oxytropis minjanensis Rech. f.", "normalized":"Oxytropis minjanensis Rech. f.", "canonical":"Oxytropis minjanensis", "hybrid":false, "details":[{"genus":{"string":"Oxytropis"}, "species":{"string":"minjanensis", "authorship":"Rech. f.", "basionymAuthorTeam":{"authorTeam":"Rech. f.", "author":["Rech. f."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 21], "22":["author_word", 27], "28":["author_word", 30]}}}
 Platypus bicaudatulus Schedl f. 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl f. 1935", "normalized":"Platypus bicaudatulus Schedl f. 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl f. 1935", "basionymAuthorTeam":{"authorTeam":"Schedl f.", "author":["Schedl f."], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 31], "32":["year", 36]}}}
 Platypus bicaudatulus Schedl filius 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl filius 1935", "normalized":"Platypus bicaudatulus Schedl filius 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl filius 1935", "basionymAuthorTeam":{"authorTeam":"Schedl filius", "author":["Schedl filius"], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 35], "36":["year", 40]}}}
 Fimbristylis ovata (Burm. f.) J. Kern|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fimbristylis ovata (Burm. f.) J. Kern", "normalized":"Fimbristylis ovata (Burm. f.) J. Kern", "canonical":"Fimbristylis ovata", "hybrid":false, "details":[{"genus":{"string":"Fimbristylis"}, "species":{"string":"ovata", "authorship":"(Burm. f.) J. Kern", "combinationAuthorTeam":{"authorTeam":"J. Kern", "author":["J. Kern"]}, "basionymAuthorTeam":{"authorTeam":"Burm. f.", "author":["Burm. f."]}}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 18], "20":["author_word", 25], "26":["author_word", 28], "30":["author_word", 32], "33":["author_word", 37]}}}
@@ -327,6 +356,7 @@ Polypodium pectinatum L. f.|{"scientificName":{"parsed":true, "parser_version":"
 Polypodium pectinatum (L. f.) typica Rosent|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum (L. f.) typica Rosent", "normalized":"Polypodium pectinatum (L. f.) typica Rosent", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"(L. f.)", "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}, "infraspecies":[{"string":"typica", "rank":"n/a", "authorship":"Rosent", "basionymAuthorTeam":{"authorTeam":"Rosent", "author":["Rosent"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "23":["author_word", 25], "26":["author_word", 28], "30":["infraspecies", 36], "37":["author_word", 43]}}}
 
 #year range
+Eurodryas orientalis Herrich-Schäffer 1845-1847|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Eurodryas orientalis Herrich-Schäffer 1845-1847", "normalized":"Eurodryas orientalis Herrich-Schäffer 1845-1847", "canonical":"Eurodryas orientalis", "hybrid":false, "details":[{"genus":{"string":"Eurodryas"}, "species":{"string":"orientalis", "authorship":"Herrich-Schäffer 1845-1847", "basionymAuthorTeam":{"authorTeam":"Herrich-Schäffer", "author":["Herrich-Schäffer"], "year":"1845-1847"}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 20], "21":["author_word", 37], "38":["year", 47]}}}
 Tridentella tangeroae Bruce, 1987-92|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Tridentella tangeroae Bruce, 1987-92","normalized":"Tridentella tangeroae Bruce 1987-92","canonical":"Tridentella tangeroae","hybrid":false,"details":[{"genus":{"string":"Tridentella"},"species":{"string":"tangeroae","authorship":"Bruce, 1987-92","basionymAuthorTeam":{"authorTeam":"Bruce","author":["Bruce"],"year":"1987-92"}}}],"positions":{"0":["genus",11],"12":["species",21],"22":["author_word",27],"29":["year",36]}}}
 
 #year in square brackets
@@ -344,8 +374,10 @@ Morea (Morea) Burt 2342343242 23424322342 23424234|{"scientificName":{"parsed":t
 Nautilus asterizans von|{"scientificName":{"parsed":true, "verbatim":"Nautilus asterizans von", "normalized":"Nautilus asterizans", "canonical":"Nautilus asterizans", "hybrid":false, "details":[{"genus":{"string":"Nautilus"}, "species":{"string":"asterizans"}}],  "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19]}}}
 
 #salvage canonical
-Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":3,"verbatim":"Morea ssjjlajajaj324$33 234243242","normalized":"Morea","canonical":"Morea","hybrid":false,"details":[{"uninomial":{"string":"Morea"}}],"positions":{"0":["uninomial",5]}}}
+Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Morea ssjjlajajaj324$33 234243242", "normalized":"Morea", "canonical":"Morea", "hybrid":false, "details":[{"uninomial":{"string":"Morea"}}], "parser_run":2, "positions":{"0":["uninomial", 5]}}}
 Morea (Morea) burtius 2342343242 23424322342 23424234|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Morea (Morea) burtius 2342343242 23424322342 23424234","normalized":"Morea (Morea) burtius","canonical":"Morea burtius","hybrid":false,"details":[{"genus":{"string":"Morea"},"infragenus":{"string":"Morea"},"species":{"string":"burtius"}}],"positions":{"0":["genus",5],"7":["infragenus",12],"14":["species",21]}}}
 Verpericola megasoma ""Dall" Pils.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Verpericola megasoma \"\"Dall\" Pils.","normalized":"Verpericola megasoma","canonical":"Verpericola megasoma","hybrid":false,"details":[{"genus":{"string":"Verpericola"},"species":{"string":"megasoma"}}],"positions":{"0":["genus",11],"12":["species",20]}}}
+Verpericola megasoma "Dall" Pils.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Verpericola megasoma \"Dall\" Pils.", "normalized":"Verpericola megasoma", "canonical":"Verpericola megasoma", "hybrid":false, "details":[{"genus":{"string":"Verpericola"}, "species":{"string":"megasoma"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 20]}}}
 Moraea spathulata ( (L. f. Klatt|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Moraea spathulata ( (L. f. Klatt","normalized":"Moraea spathulata","canonical":"Moraea spathulata","hybrid":false,"details":[{"genus":{"string":"Moraea"},"species":{"string":"spathulata"}}],"positions":{"0":["genus",6],"7":["species",17]}}}
-Cotoneaster (Pyracantha) rogersiana var.aurantiaca|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cotoneaster (Pyracantha) rogersiana var.aurantiaca", "normalized":"Cotoneaster (Pyracantha) rogersiana", "canonical":"Cotoneaster rogersiana", "hybrid":false, "details":[{"genus":{"string":"Cotoneaster"}, "infragenus":{"string":"Pyracantha"}, "species":{"string":"rogersiana"}}], "parser_run":3, "positions":{"0":["genus", 11], "13":["infragenus", 23], "25":["species", 35]}}}
+Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.", "normalized":"Stewartia micrantha (Chun) Sealy, Bot. Mag.", "canonical":"Stewartia micrantha", "hybrid":false, "details":[{"genus":{"string":"Stewartia"}, "species":{"string":"micrantha", "authorship":"(Chun) Sealy, Bot. Mag.", "combinationAuthorTeam":{"authorTeam":"Sealy, Bot. Mag.", "author":["Sealy", "Bot. Mag."]}, "basionymAuthorTeam":{"authorTeam":"Chun", "author":["Chun"]}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 19], "21":["author_word", 25], "27":["author_word", 32], "34":["author_word", 38], "39":["author_word", 43]}}}
+Pyrobaculum neutrophilum V24Sta|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pyrobaculum neutrophilum V24Sta", "normalized":"Pyrobaculum neutrophilum", "canonical":"Pyrobaculum neutrophilum", "hybrid":false, "details":[{"genus":{"string":"Pyrobaculum"}, "species":{"string":"neutrophilum"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 24]}}}

data/spec/parser/todo.txt

@@ -26,3 +26,5 @@ Polypodium lineare C.Chr. f. caudatoattenuatum Takeda   Polypodium
 
 Rosa gallica × tomentosa var. eglandulosa R.Keller      Rosa gallica
 Rosa gallica × afzeliana subsp. vosagiaca forma subcomplicata R.Keller        Rosa gallica
+
+Salmonella sp. (ser.) brancaster Macdonald, Sivell, Emms and Taylor 1948

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: biodiversity19
 version: !ruby/object:Gem::Version
-  version: 1.0.22
+  version: 1.1.0
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-08-28 00:00:00.000000000 Z
+date: 2012-10-18 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: treetop
@@ -162,7 +162,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -340971722675722779
+      hash: 1697761162885604721
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: