biodiversity19 0.6.3 → 0.6.4
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- data/README.rdoc +25 -0
- data/VERSION +1 -1
- data/bin/parserver +4 -1
- metadata +7 -12
data/README.rdoc
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@@ -11,10 +11,35 @@ To install gem you need RubyGems >= 1.3.6
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== Example usage
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=== As a command line script
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You can parse file with taxonomic names from command line. File should contain one scientific name per line
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nnparser file_with_names
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=== As a socket server
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If you do not use ruby and need a fast access to the parser functionality you can use a socket server
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parserver
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Then you can access it via 4334 port using a socket client library of your programming language. If you want to check if socket server works for you try:
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telnet localhost 4334
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If you enter a line with a scientific name server will send you back parsed information in json format.
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To stop telnet client type any of 'end','exit','q', '.' (without quotes) instead of scientific name
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$ telnet localhost 4334
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Trying ::1...
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Connected to localhost.
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Escape character is '^]'.
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Acacia abyssinica Hochst. ex Benth. ssp. calophylla Brenan
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{"scientificName":{"canonical":"Acacia abyssinica calophylla","parsed":true,"parser_run":1,"verbatim":"Acacia abyssinica Hochst. ex Benth. ssp. calophylla Brenan\r\n","positions":{"0":["genus",6],"18":["author_word",25],"29":["author_word",35],"7":["species",17],"41":["infraspecies",51],"52":["author_word",58]},"hybrid":false,"normalized":"Acacia abyssinica Hochst. ex Benth. ssp. calophylla Brenan","details":[{"species":{"basionymAuthorTeam":{"exAuthorTeam":{"author":["Benth."],"authorTeam":"Benth."},"author":["Hochst."],"authorTeam":"Hochst."},"string":"abyssinica","authorship":"Hochst. ex Benth."},"infraspecies":[{"basionymAuthorTeam":{"author":["Brenan"],"authorTeam":"Brenan"},"string":"calophylla","rank":"ssp.","authorship":"Brenan"}],"genus":{"string":"Acacia"}}]}}
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=== As a library
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You can use it as a library
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require 'biodiversity'
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data/VERSION
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@@ -1 +1 @@
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1
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-
0.6.
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0.6.4
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data/bin/parserver
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@@ -8,7 +8,10 @@ server = TCPServer.open(4334) # Socket to listen on port 4334
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loop do # Servers run forever
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client = server.accept # Wait for a client to connect
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while a = client.readline
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-
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if ['end','exit','q', '.'].include? a.strip
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client.close
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break
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end
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client.puts parser.parse(a).to_json
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end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: biodiversity19
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version: !ruby/object:Gem::Version
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hash: 1
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prerelease: false
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segments:
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- 0
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- 6
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version: 0.6.
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- 4
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version: 0.6.4
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platform: ruby
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authors:
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- Dmitry Mozzherin
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@@ -15,7 +14,7 @@ autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2010-
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date: 2010-08-12 00:00:00 -04:00
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default_executable:
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dependencies:
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- !ruby/object:Gem::Dependency
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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hash: 3
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segments:
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- 0
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version: "0"
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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hash: 3
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segments:
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- 0
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version: "0"
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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hash: 3
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segments:
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- 0
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version: "0"
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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hash: 3
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segments:
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- 0
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version: "0"
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@@ -118,11 +113,11 @@ signing_key:
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specification_version: 3
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summary: Parser of scientific names
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test_files:
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-
- spec/spec_helper.rb
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- spec/guid/lsid.spec.rb
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- spec/biodiversity_spec.rb
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-
- spec/
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- spec/guid/lsid.spec.rb
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- spec/parser/scientific_name.spec.rb
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-
- spec/parser/scientific_name_clean.spec.rb
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- spec/parser/scientific_name_canonical.spec.rb
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- spec/parser/scientific_name_clean.spec.rb
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- spec/parser/scientific_name_dirty.spec.rb
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- spec/parser/spec_helper.rb
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- spec/spec_helper.rb
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