biodiversity19 0.5.15

Sign up to get free protection for your applications and to get access to all the features.
Files changed (31) hide show
  1. data/.document +5 -0
  2. data/.gitignore +13 -0
  3. data/LICENSE +20 -0
  4. data/README.rdoc +44 -0
  5. data/Rakefile +43 -0
  6. data/VERSION +1 -0
  7. data/bin/nnparse +43 -0
  8. data/bin/parserver +14 -0
  9. data/biodiversity.gemspec +85 -0
  10. data/conf/environment.rb +3 -0
  11. data/lib/biodiversity/guid/lsid.rb +18 -0
  12. data/lib/biodiversity/guid.rb +2 -0
  13. data/lib/biodiversity/parser/scientific_name_canonical.rb +475 -0
  14. data/lib/biodiversity/parser/scientific_name_canonical.treetop +111 -0
  15. data/lib/biodiversity/parser/scientific_name_clean.rb +6142 -0
  16. data/lib/biodiversity/parser/scientific_name_clean.treetop +1195 -0
  17. data/lib/biodiversity/parser/scientific_name_dirty.rb +1096 -0
  18. data/lib/biodiversity/parser/scientific_name_dirty.treetop +211 -0
  19. data/lib/biodiversity/parser.rb +57 -0
  20. data/lib/biodiversity.rb +9 -0
  21. data/pkg/.gitignore +0 -0
  22. data/spec/biodiversity_spec.rb +0 -0
  23. data/spec/guid/lsid.spec.rb +12 -0
  24. data/spec/parser/scientific_name.spec.rb +35 -0
  25. data/spec/parser/scientific_name_canonical.spec.rb +27 -0
  26. data/spec/parser/scientific_name_clean.spec.rb +504 -0
  27. data/spec/parser/scientific_name_dirty.spec.rb +90 -0
  28. data/spec/parser/spec_helper.rb +69 -0
  29. data/spec/parser/test_data.txt +235 -0
  30. data/spec/spec_helper.rb +0 -0
  31. metadata +122 -0
metadata ADDED
@@ -0,0 +1,122 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: biodiversity19
3
+ version: !ruby/object:Gem::Version
4
+ prerelease: false
5
+ segments:
6
+ - 0
7
+ - 5
8
+ - 15
9
+ version: 0.5.15
10
+ platform: ruby
11
+ authors:
12
+ - Dmitry Mozzherin
13
+ autorequire:
14
+ bindir: bin
15
+ cert_chain: []
16
+
17
+ date: 2010-03-25 00:00:00 -04:00
18
+ default_executable: nnparse
19
+ dependencies:
20
+ - !ruby/object:Gem::Dependency
21
+ name: treetop
22
+ prerelease: false
23
+ requirement: &id001 !ruby/object:Gem::Requirement
24
+ requirements:
25
+ - - ">="
26
+ - !ruby/object:Gem::Version
27
+ segments:
28
+ - 0
29
+ version: "0"
30
+ type: :runtime
31
+ version_requirements: *id001
32
+ - !ruby/object:Gem::Dependency
33
+ name: rspec
34
+ prerelease: false
35
+ requirement: &id002 !ruby/object:Gem::Requirement
36
+ requirements:
37
+ - - ">="
38
+ - !ruby/object:Gem::Version
39
+ segments:
40
+ - 0
41
+ version: "0"
42
+ type: :development
43
+ version_requirements: *id002
44
+ description: Tools for biodiversity informatics for ruby 1.9
45
+ email: dmozzherin@gmail.com
46
+ executables:
47
+ - nnparse
48
+ extensions: []
49
+
50
+ extra_rdoc_files:
51
+ - LICENSE
52
+ - README.rdoc
53
+ files:
54
+ - .document
55
+ - .gitignore
56
+ - LICENSE
57
+ - README.rdoc
58
+ - Rakefile
59
+ - VERSION
60
+ - bin/nnparse
61
+ - bin/parserver
62
+ - biodiversity.gemspec
63
+ - conf/environment.rb
64
+ - lib/biodiversity.rb
65
+ - lib/biodiversity/guid.rb
66
+ - lib/biodiversity/guid/lsid.rb
67
+ - lib/biodiversity/parser.rb
68
+ - lib/biodiversity/parser/scientific_name_canonical.rb
69
+ - lib/biodiversity/parser/scientific_name_canonical.treetop
70
+ - lib/biodiversity/parser/scientific_name_clean.rb
71
+ - lib/biodiversity/parser/scientific_name_clean.treetop
72
+ - lib/biodiversity/parser/scientific_name_dirty.rb
73
+ - lib/biodiversity/parser/scientific_name_dirty.treetop
74
+ - pkg/.gitignore
75
+ - spec/biodiversity_spec.rb
76
+ - spec/guid/lsid.spec.rb
77
+ - spec/parser/scientific_name.spec.rb
78
+ - spec/parser/scientific_name_canonical.spec.rb
79
+ - spec/parser/scientific_name_clean.spec.rb
80
+ - spec/parser/scientific_name_dirty.spec.rb
81
+ - spec/parser/spec_helper.rb
82
+ - spec/parser/test_data.txt
83
+ - spec/spec_helper.rb
84
+ has_rdoc: true
85
+ homepage: http://github.com/dimus/biodiversity
86
+ licenses: []
87
+
88
+ post_install_message:
89
+ rdoc_options:
90
+ - --charset=UTF-8
91
+ require_paths:
92
+ - lib
93
+ required_ruby_version: !ruby/object:Gem::Requirement
94
+ requirements:
95
+ - - ">="
96
+ - !ruby/object:Gem::Version
97
+ segments:
98
+ - 0
99
+ version: "0"
100
+ required_rubygems_version: !ruby/object:Gem::Requirement
101
+ requirements:
102
+ - - ">="
103
+ - !ruby/object:Gem::Version
104
+ segments:
105
+ - 0
106
+ version: "0"
107
+ requirements: []
108
+
109
+ rubyforge_project:
110
+ rubygems_version: 1.3.6
111
+ signing_key:
112
+ specification_version: 3
113
+ summary: Parser of scientific names
114
+ test_files:
115
+ - spec/parser/scientific_name_dirty.spec.rb
116
+ - spec/parser/scientific_name_canonical.spec.rb
117
+ - spec/parser/scientific_name_clean.spec.rb
118
+ - spec/parser/spec_helper.rb
119
+ - spec/parser/scientific_name.spec.rb
120
+ - spec/biodiversity_spec.rb
121
+ - spec/guid/lsid.spec.rb
122
+ - spec/spec_helper.rb