biodiversity 3.4.4 → 3.4.5

data/lib/biodiversity/parser/scientific_name_clean.treetop

@@ -816,7 +816,7 @@ grammar ScientificNameClean
       end
     }
     /
-    a:basionym_authorship_with_parenthesis space b:simple_authorship ","? space c:ex_authorship {
+    a:basionym_authorship_with_parenthesis space b:simple_authorship  space c:emend_authorship {
       def value
         a.value + " " + b.value + " " + c.value
       end
@@ -865,6 +865,23 @@ grammar ScientificNameClean
       end
     }
     /
+    a:simple_authorship space b:emend_authorship {
+      def value
+        a.value + " " + b.value
+      end
+
+      def pos
+        a.pos.merge(b.pos)
+      end
+
+      def details
+        val = a.details
+        val[:authorship] = text_value.strip
+        val[:basionymAuthorTeam].merge!(b.details)
+        val
+      end
+    }
+    /
     simple_authorship
   end
 
@@ -903,6 +920,23 @@ grammar ScientificNameClean
       end
     }
     /
+    left_paren space a:simple_authorship space b:emend_authorship space right_paren {
+      def value
+        "(" + a.value + " " + b.value + ")"
+      end
+
+      def pos
+        a.pos.merge(b.pos)
+      end
+
+      def details
+        val = a.details
+        val[:basionymAuthorTeam].merge!(b.details)
+        val[:authorship] = text_value.strip
+        val
+      end
+    }
+    /
     left_paren space a:simple_authorship space right_paren {
       def value
         "(" + a.value + ")"
@@ -966,6 +1000,23 @@ grammar ScientificNameClean
     }
   end
 
+  rule emend_authorship  
+    emend space b:simple_authorship {
+      def value
+        " emend. " + b.value
+      end
+
+      def pos
+        b.pos
+      end
+
+      def details
+        val = {:emendAuthorTeam => {:authorTeam => b.text_value.strip}.merge(b.details[:basionymAuthorTeam])}
+        val
+      end
+    }
+  end
+
   rule simple_authorship
     a:authors_names space [,]? space b:year? [,]? space "non" space authors_names space [,]? space year {
       def value
@@ -1069,6 +1120,10 @@ grammar ScientificNameClean
     ("ex"/"in") &[\s]
   end
 
+  rule emend
+    ("emend."/"emend") &[\s]
+  end
+
   rule author_separator
     ("&"/"&"/","/"apud"/"and"/"et") {
       def apply(a,b)
@@ -1089,7 +1144,21 @@ grammar ScientificNameClean
   end
 
   rule author_name
-    space a:author_name_without_postfix space b:author_postfix_word space !latin_word {
+    space a:author_name_without_postfix space b:author_maybe_filius space !latin_word {
+      def value
+        a.value + " " + b.value
+      end
+
+      def pos
+        a.pos.merge(b.pos)
+      end
+
+      def details
+        {:author => [value]}
+      end
+    }
+    /
+    space a:author_name_without_postfix space b:author_filius {
       def value
         a.value + " " + b.value
       end
@@ -1153,7 +1222,7 @@ grammar ScientificNameClean
       end
     }
     /
-    ("arg."/"et al.\{\?\}"/"et al."/"et al") {
+    ("arg."/"et al.\{\?\}"/"et al."/"et al"/"& al."/"& al") {
       def value
         text_value.strip
       end
@@ -1202,7 +1271,7 @@ grammar ScientificNameClean
   end
 
   rule author_prefix_word
-    space ("ab"/"af"/"bis"/"da"/"der"/"del"/"des"/"den"/"della"/"dela"/"de"/"di"/"du"/"do"/"la"/"ter"/"van"/"von") &space_hard {
+    space ("ab"/"af"/"bis"/"da"/"der"/"del"/"des"/"den"/"della"/"dela"/"de"/"di"/"du"/"do"/"la"/"'t"/"ter"/"van"/"von") &space_hard {
       def value
         text_value
       end
@@ -1214,8 +1283,20 @@ grammar ScientificNameClean
     }
   end
 
-  rule author_postfix_word
-    ("f."/"fil."/"filius") {
+  rule author_filius
+    ("fil."/"filius") {
+      def value
+        text_value.strip
+      end
+
+      def pos
+        {interval.begin => ["author_word", interval.end]}
+      end
+    }
+  end
+
+  rule author_maybe_filius
+    "f." {
       def value
         text_value.strip
       end

data/lib/biodiversity/version.rb

@@ -1,3 +1,3 @@
 module Biodiversity
-  VERSION = "3.4.4"
+  VERSION = "3.4.5"
 end

data/spec/files/test_data.txt

@@ -62,6 +62,14 @@ Pseudocercospora__dendrobii|{"scientificName":{"id":"ae8a4688-2b2a-5974-81bf-196
   Oxalis_barrelieri|{"scientificName":{"id":"1c4bb48b-d134-54c8-bac1-6771d1f4c9c6", "parsed":true, "parser_version":"test_version", "verbatim":"  Oxalis_barrelieri", "normalized":"Oxalis barrelieri", "canonical":"Oxalis barrelieri", "hybrid":false, "details":[{"genus":{"string":"Oxalis"}, "species":{"string":"barrelieri"}}], "parser_run":1, "positions":{"2":["genus", 8], "9":["species", 19]}}}
 Oxalis_barrelieri  |{"scientificName":{"id":"c57de7fd-b94e-54e1-a856-72b0668ab818", "parsed":true, "parser_version":"test_version", "verbatim":"Oxalis_barrelieri  ", "normalized":"Oxalis barrelieri", "canonical":"Oxalis barrelieri", "hybrid":false, "details":[{"genus":{"string":"Oxalis"}, "species":{"string":"barrelieri"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
 Potamogeton iilinoensis var. ventanicola|{"scientificName":{"id":"edf418ec-98b3-52fb-a8de-26808b61c50f", "parsed":true, "parser_version":"test_version", "verbatim":"Potamogeton iilinoensis var. ventanicola", "normalized":"Potamogeton iilinoensis var. ventanicola", "canonical":"Potamogeton iilinoensis ventanicola", "hybrid":false, "details":[{"genus":{"string":"Potamogeton"}, "species":{"string":"iilinoensis"}, "infraspecies":[{"string":"ventanicola", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 40]}}}
+Xanthophyllum discolor ssp. macranthum Chod. ex van der Meijden|{"scientificName":{"id":"9323f867-a621-58eb-9066-dd943a92f957", "parsed":true, "parser_version":"test_version", "verbatim":"Xanthophyllum discolor ssp. macranthum Chod. ex van der Meijden", "normalized":"Xanthophyllum discolor ssp. macranthum Chod. ex van der Meijden", "canonical":"Xanthophyllum discolor macranthum", "hybrid":false, "details":[{"genus":{"string":"Xanthophyllum"}, "species":{"string":"discolor"}, "infraspecies":[{"string":"macranthum", "rank":"ssp.", "authorship":"Chod. ex van der Meijden", "basionymAuthorTeam":{"authorTeam":"Chod.", "author":["Chod."], "exAuthorTeam":{"authorTeam":"van der Meijden", "author":["van der Meijden"]}}}]}], "parser_run":1, "positions":{"0":["genus", 13], "14":["species", 22], "23":["infraspecific_type", 27], "28":["infraspecies", 38], "39":["author_word", 44], "48":["author_word", 51], "52":["author_word", 55], "56":["author_word", 63]}}}
+Adonis cyllenea Boiss. & al.|{"scientificName":{"id":"a7c2cb28-2ec2-55b5-88a2-6cfd633cbd00", "parsed":true, "parser_version":"test_version", "verbatim":"Adonis cyllenea Boiss. & al.", "normalized":"Adonis cyllenea Boiss. & al.", "canonical":"Adonis cyllenea", "hybrid":false, "details":[{"genus":{"string":"Adonis"}, "species":{"string":"cyllenea", "authorship":"Boiss. & al.", "basionymAuthorTeam":{"authorTeam":"Boiss. & al.", "author":["Boiss. & al."]}}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 15], "16":["author_word", 22], "23":["author_word", 28]}}}
+Adonis cyllenea Boiss. & al. var. paryadrica Boiss.|{"scientificName":{"id":"6bc790ae-210d-518e-9e20-2d4d517a08ef", "parsed":true, "parser_version":"test_version", "verbatim":"Adonis cyllenea Boiss. & al. var. paryadrica Boiss.", "normalized":"Adonis cyllenea Boiss. & al. var. paryadrica Boiss.", "canonical":"Adonis cyllenea paryadrica", "hybrid":false, "details":[{"genus":{"string":"Adonis"}, "species":{"string":"cyllenea", "authorship":"Boiss. & al.", "basionymAuthorTeam":{"authorTeam":"Boiss. & al.", "author":["Boiss. & al."]}}, "infraspecies":[{"string":"paryadrica", "rank":"var.", "authorship":"Boiss.", "basionymAuthorTeam":{"authorTeam":"Boiss.", "author":["Boiss."]}}]}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 15], "16":["author_word", 22], "23":["author_word", 28], "29":["infraspecific_type", 33], "34":["infraspecies", 44], "45":["author_word", 51]}}}
+
+# Emendatum (rectified by)
+Cleome kermesina Gilg & Gilg-Ben. emend. Kers var. plebeia Kers|{"scientificName":{"id":"291ce8f1-0e40-5ed5-afbf-a7a11b0bba59", "parsed":true, "parser_version":"test_version", "verbatim":"Cleome kermesina Gilg & Gilg-Ben. emend. Kers var. plebeia Kers", "normalized":"Cleome kermesina Gilg & Gilg-Ben. emend. Kers var. plebeia Kers", "canonical":"Cleome kermesina plebeia", "hybrid":false, "details":[{"genus":{"string":"Cleome"}, "species":{"string":"kermesina", "authorship":"Gilg & Gilg-Ben. emend. Kers", "basionymAuthorTeam":{"authorTeam":"Gilg & Gilg-Ben.", "author":["Gilg", "Gilg-Ben."], "emendAuthorTeam":{"authorTeam":"Kers", "author":["Kers"]}}}, "infraspecies":[{"string":"plebeia", "rank":"var.", "authorship":"Kers", "basionymAuthorTeam":{"authorTeam":"Kers", "author":["Kers"]}}]}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 16], "17":["author_word", 21], "24":["author_word", 33], "41":["author_word", 45], "46":["infraspecific_type", 50], "51":["infraspecies", 58], "59":["author_word", 63]}}}
+Cleome kermesina (Gilg & Gilg-Ben. emend. Kers) Kers 1888|{"scientificName":{"id":"1f3ec96a-64bc-5cbf-ba09-efb860827e60", "parsed":true, "parser_version":"test_version", "verbatim":"Cleome kermesina (Gilg & Gilg-Ben. emend. Kers) Kers 1888", "normalized":"Cleome kermesina (Gilg & Gilg-Ben. emend. Kers) Kers 1888", "canonical":"Cleome kermesina", "hybrid":false, "details":[{"genus":{"string":"Cleome"}, "species":{"string":"kermesina", "authorship":"(Gilg & Gilg-Ben. emend. Kers) Kers 1888", "combinationAuthorTeam":{"authorTeam":"Kers", "author":["Kers"], "year":"1888"}, "basionymAuthorTeam":{"authorTeam":"Gilg & Gilg-Ben.", "author":["Gilg", "Gilg-Ben."], "emendAuthorTeam":{"authorTeam":"Kers", "author":["Kers"]}}}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 16], "18":["author_word", 22], "25":["author_word", 34], "42":["author_word", 46], "48":["author_word", 52], "53":["year", 57]}}}
+Cleome kermesina (Gilg & Gilg-Ben. emend. Kers) Kers emend Roskov 2000|{"scientificName":{"id":"8079766d-e47c-54a4-a138-45fd9dc0dc02", "parsed":true, "parser_version":"test_version", "verbatim":"Cleome kermesina (Gilg & Gilg-Ben. emend. Kers) Kers emend Roskov 2000", "normalized":"Cleome kermesina (Gilg & Gilg-Ben. emend. Kers) Kers emend. Roskov 2000", "canonical":"Cleome kermesina", "hybrid":false, "details":[{"genus":{"string":"Cleome"}, "species":{"string":"kermesina", "authorship":"(Gilg & Gilg-Ben. emend. Kers) Kers emend Roskov 2000", "combinationAuthorTeam":{"authorTeam":"Kers", "author":["Kers"], "emendAuthorTeam":{"authorTeam":"Roskov", "author":["Roskov"], "year":"2000"}}, "basionymAuthorTeam":{"authorTeam":"Gilg & Gilg-Ben.", "author":["Gilg", "Gilg-Ben."], "emendAuthorTeam":{"authorTeam":"Kers", "author":["Kers"]}}}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 16], "18":["author_word", 22], "25":["author_word", 34], "42":["author_word", 46], "48":["author_word", 52], "59":["author_word", 65], "66":["year", 70]}}} 
 
 #binomial with author and a year
 Platypus bicaudatulus Schedl 1935|{"scientificName":{"id":"d192a4f8-424f-5eba-affb-9855b153ff53", "parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl 1935","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl 1935","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"29":["year",33]}}}
@@ -90,6 +98,7 @@ Serjania meridionalis Cambess. var. o'donelli F.A. Barkley|{"scientificName":{"i
 Pseudocercospora dendrobii Goh & W.H. Hsieh 1990|{"scientificName":{"id":"988fd6ba-0221-5b62-a041-fb81addc4465", "parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh & W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh & W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "33":["author_word", 37], "38":["author_word", 43], "44":["year", 48]}}}
 Pseudocercospora dendrobii Goh and W.H. Hsieh 1990|{"scientificName":{"id":"4d701dca-8774-5a5e-9378-11f60c0e735c", "parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh and W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh and W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh and W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "35":["author_word", 39], "40":["author_word", 45], "46":["year", 50]}}}
 Pseudocercospora dendrobii Goh apud W.H. Hsieh 1990|{"scientificName":{"id":"4dee6fc8-3be1-520c-9937-5a7342a17241", "parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh apud W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh apud W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh apud W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh apud W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "36":["author_word", 40], "41":["author_word", 46], "47":["year", 51]}}}
+Lysimachia montana (Reinw.) Bakh. fil. apud Bentvelzen|{"scientificName":{"id":"f4ed6dca-d95f-59d3-b782-c6add11d4639", "parsed":true, "parser_version":"test_version", "verbatim":"Lysimachia montana (Reinw.) Bakh. fil. apud Bentvelzen", "normalized":"Lysimachia montana (Reinw.) Bakh. fil. apud Bentvelzen", "canonical":"Lysimachia montana", "hybrid":false, "details":[{"genus":{"string":"Lysimachia"}, "species":{"string":"montana", "authorship":"(Reinw.) Bakh. fil. apud Bentvelzen", "combinationAuthorTeam":{"authorTeam":"Bakh. fil. apud Bentvelzen", "author":["Bakh. fil.", "Bentvelzen"]}, "basionymAuthorTeam":{"authorTeam":"Reinw.", "author":["Reinw."]}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "20":["author_word", 26], "28":["author_word", 33], "34":["author_word", 38], "44":["author_word", 54]}}}
 Pseudocercospora dendrobii Goh et W.H. Hsieh 1990|{"scientificName":{"id":"13175b62-b95b-53b7-8d88-1be6fca794ec", "parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh et W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh et W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "34":["author_word", 38], "39":["author_word", 44], "45":["year", 49]}}}
 Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg|{"scientificName":{"id":"ffeb3703-63e5-5ff3-b296-582c0c3a3373", "parsed":true, "parser_version":"test_version", "verbatim":"Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "normalized":"Schottera nicaeensis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "canonical":"Schottera nicaeensis", "hybrid":false, "details":[{"genus":{"string":"Schottera"}, "species":{"string":"nicaeensis", "authorship":"(J.V. Lamouroux ex Duby) Guiry & Hollenberg", "combinationAuthorTeam":{"authorTeam":"Guiry & Hollenberg", "author":["Guiry", "Hollenberg"]}, "basionymAuthorTeam":{"authorTeam":"J.V. Lamouroux", "author":["J.V. Lamouroux"], "exAuthorTeam":{"authorTeam":"Duby", "author":["Duby"]}}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 20], "22":["author_word", 26], "27":["author_word", 36], "40":["author_word", 44], "46":["author_word", 51], "54":["author_word", 64]}}}
 Schottera nicaeënsis (J.V. Lamouroux ex Duby in Duby apud Johnson) Guiry & Hollenberg|{"scientificName":{"id":"5a929f5c-c4f1-5ba4-8a5f-eb906d43c692", "parsed":true, "parser_version":"test_version", "verbatim":"Schottera nicaeënsis (J.V. Lamouroux ex Duby in Duby apud Johnson) Guiry & Hollenberg", "normalized":"Schottera nicaeensis (J.V. Lamouroux ex Duby ex Duby apud Johnson) Guiry & Hollenberg", "canonical":"Schottera nicaeensis", "hybrid":false, "details":[{"genus":{"string":"Schottera"}, "species":{"string":"nicaeensis", "authorship":"(J.V. Lamouroux ex Duby in Duby apud Johnson) Guiry & Hollenberg", "combinationAuthorTeam":{"authorTeam":"Guiry & Hollenberg", "author":["Guiry", "Hollenberg"]}, "basionymAuthorTeam":{"authorTeam":"J.V. Lamouroux", "author":["J.V. Lamouroux"], "exAuthorTeam":{"authorTeam":"Duby", "author":["Duby"]}}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 20], "22":["author_word", 26], "27":["author_word", 36], "40":["author_word", 44], "67":["author_word", 72], "75":["author_word", 85]}}}
@@ -230,7 +239,9 @@ Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet|{"scientificName":{"
 Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934|{"scientificName":{"id":"f03d53d7-2db1-591f-8727-6b77c0af2e0c", "parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"string":"Stagonospora"},"species":{"string":"polyspora","authorship":"M.T. Lucas & Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas & Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"36":["author_word",41],"42":["author_word",44],"45":["author_word",51],"52":["year",56]}}}
 Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"id":"a8a48393-0ca9-5916-83e3-fb32b7b0c422", "parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"string":"Stagonospora"},"species":{"string":"polyspora","authorship":"M.T. Lucas et Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas et Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"37":["author_word",42],"43":["author_word",45],"46":["author_word",52],"53":["year",57]}}}
 Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"id":"e59e3b01-311d-5dda-88e7-7e821440f5ee", "parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","canonical":"Cladoniicola staurospora","hybrid":false,"details":[{"genus":{"string":"Cladoniicola"},"species":{"string":"staurospora","authorship":"Diederich, van den Boom & Aptroot 2001","basionymAuthorTeam":{"authorTeam":"Diederich, van den Boom & Aptroot","author":["Diederich","van den Boom","Aptroot"],"year":"2001"}}}],"positions":{"0":["genus",12],"13":["species",24],"25":["author_word",34],"36":["author_word",39],"40":["author_word",43],"44":["author_word",48],"51":["author_word",58],"59":["year",63]}}}
+Prometheum serpentinicum (Werdermann) H. 't Hart var. giganteum (Eggli) t'Hart|{"scientificName":{"id":"061cc315-1c60-5dd9-8470-8be1f217d164", "parsed":true, "parser_version":"test_version", "verbatim":"Prometheum serpentinicum (Werdermann) H. 't Hart var. giganteum (Eggli) t'Hart", "normalized":"Prometheum serpentinicum (Werdermann) H. 't Hart var. giganteum (Eggli)", "canonical":"Prometheum serpentinicum giganteum", "hybrid":false, "details":[{"genus":{"string":"Prometheum"}, "species":{"string":"serpentinicum", "authorship":"(Werdermann) H. 't Hart", "combinationAuthorTeam":{"authorTeam":"H. 't Hart", "author":["H. 't Hart"]}, "basionymAuthorTeam":{"authorTeam":"Werdermann", "author":["Werdermann"]}}, "infraspecies":[{"string":"giganteum", "rank":"var.", "authorship":"(Eggli)", "basionymAuthorTeam":{"authorTeam":"Eggli", "author":["Eggli"]}}]}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 24], "26":["author_word", 36], "38":["author_word", 40], "41":["author_word", 43], "44":["author_word", 48], "49":["infraspecific_type", 53], "54":["infraspecies", 63], "65":["author_word", 70]}}}
 Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"id":"e649d828-0ae9-5b5b-b079-1485c9bbf872", "parsed":true, "parser_version":"test_version", "verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "canonical":"Yarrowia lipolytica lipolytica", "hybrid":false, "details":[{"genus":{"string":"Yarrowia"}, "species":{"string":"lipolytica"}, "infraspecies":[{"string":"lipolytica", "rank":"var.", "authorship":"(Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "combinationAuthorTeam":{"authorTeam":"Van der Walt & Arx", "author":["Van der Walt", "Arx"], "year":"1981"}, "basionymAuthorTeam":{"authorTeam":"Wick., Kurtzman & E.A. Herrm.", "author":["Wick.", "Kurtzman", "E.A. Herrm."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19], "20":["infraspecific_type", 24], "25":["infraspecies", 35], "37":["author_word", 42], "44":["author_word", 52], "55":["author_word", 59], "60":["author_word", 66], "68":["author_word", 71], "72":["author_word", 75], "76":["author_word", 80], "83":["author_word", 86], "87":["year", 91]}}}
+Ficus du K. Schum. & Lauterb.|{"scientificName":{"id":"bb863981-dcfb-523c-9c73-5d7c33a337fe", "parsed":true, "parser_version":"test_version", "verbatim":"Ficus du K. Schum. & Lauterb.", "normalized":"Ficus du K. Schum. & Lauterb.", "canonical":"Ficus", "hybrid":false, "details":[{"uninomial":{"string":"Ficus", "authorship":"du K. Schum. & Lauterb.", "basionymAuthorTeam":{"authorTeam":"du K. Schum. & Lauterb.", "author":["du K. Schum.", "Lauterb."]}}}], "parser_run":1, "positions":{"0":["uninomial", 5], "6":["author_word", 8], "9":["author_word", 11], "12":["author_word", 18], "21":["author_word", 29]}}}
 Armeria carpetana ssp. carpetana H. del Villar|{"scientificName":{"id":"4b16116e-549d-56bf-959a-ff11edb25021", "parsed":true, "parser_version":"test_version", "verbatim":"Armeria carpetana ssp. carpetana H. del Villar", "normalized":"Armeria carpetana ssp. carpetana H. del Villar", "canonical":"Armeria carpetana carpetana", "hybrid":false, "details":[{"genus":{"string":"Armeria"}, "species":{"string":"carpetana"}, "infraspecies":[{"string":"carpetana", "rank":"ssp.", "authorship":"H. del Villar", "basionymAuthorTeam":{"authorTeam":"H. del Villar", "author":["H. del Villar"]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "18":["infraspecific_type", 22], "23":["infraspecies", 32], "33":["author_word", 35], "36":["author_word", 39], "40":["author_word", 46]}}}
 Physalospora rubiginosa (Fr.) anon.|{"scientificName":{"id":"85151e19-ab25-5ba5-8a19-47a5859c41bb", "parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Physalospora rubiginosa (Fr.) anon.","normalized":"Physalospora rubiginosa (Fr.) anon.","canonical":"Physalospora rubiginosa","hybrid":false,"details":[{"genus":{"string":"Physalospora"},"species":{"string":"rubiginosa","authorship":"(Fr.) anon.","combinationAuthorTeam":{"authorTeam":"anon.","author":["unknown"]},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",28],"30":["unknown_author",35]}}}
 Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"id":"fe8c9a43-3480-5598-891d-e2a864781d13", "parsed":true, "parser_version":"test_version", "verbatim":"Pleurotus ëous (Berk.) Sacc. 1887", "normalized":"Pleurotus eous (Berk.) Sacc. 1887", "canonical":"Pleurotus eous", "hybrid":false, "details":[{"genus":{"string":"Pleurotus"}, "species":{"string":"eous", "authorship":"(Berk.) Sacc. 1887", "combinationAuthorTeam":{"authorTeam":"Sacc.", "author":["Sacc."], "year":"1887"}, "basionymAuthorTeam":{"authorTeam":"Berk.", "author":["Berk."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14], "16":["author_word", 21], "23":["author_word", 28], "29":["year", 33]}}}
@@ -412,6 +423,8 @@ Oxytropis minjanensis Rech. f.|{"scientificName":{"id":"6027cbc2-fa15-510b-ab3e-
 Platypus bicaudatulus Schedl f. 1935|{"scientificName":{"id":"05799df9-471e-5c68-92fe-4edcc0a69d29", "parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl f. 1935", "normalized":"Platypus bicaudatulus Schedl f. 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl f. 1935", "basionymAuthorTeam":{"authorTeam":"Schedl f.", "author":["Schedl f."], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 31], "32":["year", 36]}}}
 Platypus bicaudatulus Schedl filius 1935|{"scientificName":{"id":"2b6cd51f-aa0f-58fd-88fa-2e261cedacbb", "parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl filius 1935", "normalized":"Platypus bicaudatulus Schedl filius 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl filius 1935", "basionymAuthorTeam":{"authorTeam":"Schedl filius", "author":["Schedl filius"], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 35], "36":["year", 40]}}}
 Platypus bicaudatulus Schedl fil. 1935|{"scientificName":{"id":"9ecd2519-8481-56e4-abe0-23408cfc0922", "parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl fil. 1935", "normalized":"Platypus bicaudatulus Schedl fil. 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl fil. 1935", "basionymAuthorTeam":{"authorTeam":"Schedl fil.", "author":["Schedl fil."], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 33], "34":["year", 38]}}}
+Anisotome aromatica Hook. fil. var. obtusa Allan|{"scientificName":{"id":"2a3d428b-8ee3-52bd-b776-44ccd849ad29", "parsed":true, "parser_version":"test_version", "verbatim":"Anisotome aromatica Hook. fil. var. obtusa Allan", "normalized":"Anisotome aromatica Hook. fil. var. obtusa Allan", "canonical":"Anisotome aromatica obtusa", "hybrid":false, "details":[{"genus":{"string":"Anisotome"}, "species":{"string":"aromatica", "authorship":"Hook. fil.", "basionymAuthorTeam":{"authorTeam":"Hook. fil.", "author":["Hook. fil."]}}, "infraspecies":[{"string":"obtusa", "rank":"var.", "authorship":"Allan", "basionymAuthorTeam":{"authorTeam":"Allan", "author":["Allan"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 19], "20":["author_word", 25], "26":["author_word", 30], "31":["infraspecific_type", 35], "36":["infraspecies", 42], "43":["author_word", 48]}}}
+Debregeasia squamata King ex Hook. fil. f. etuberculata C.M. Wilmot-Dear|{"scientificName":{"id":"fddb3ae4-1cab-52a6-a88f-547c2a019579", "parsed":true, "parser_version":"test_version", "verbatim":"Debregeasia squamata King ex Hook. fil. f. etuberculata C.M. Wilmot-Dear", "normalized":"Debregeasia squamata King ex Hook. fil. f. etuberculata C.M. Wilmot-Dear", "canonical":"Debregeasia squamata etuberculata", "hybrid":false, "details":[{"genus":{"string":"Debregeasia"}, "species":{"string":"squamata", "authorship":"King ex Hook. fil.", "basionymAuthorTeam":{"authorTeam":"King", "author":["King"], "exAuthorTeam":{"authorTeam":"Hook. fil.", "author":["Hook. fil."]}}}, "infraspecies":[{"string":"etuberculata", "rank":"f.", "authorship":"C.M. Wilmot-Dear", "basionymAuthorTeam":{"authorTeam":"C.M. Wilmot-Dear", "author":["C.M. Wilmot-Dear"]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["author_word", 25], "29":["author_word", 34], "35":["author_word", 39], "40":["infraspecific_type", 42], "43":["infraspecies", 55], "56":["author_word", 60], "61":["author_word", 72]}}}
 Fimbristylis ovata (Burm. f.) J. Kern|{"scientificName":{"id":"01207e0b-8de4-5a4e-99fc-e60b581c0d1c", "parsed":true, "parser_version":"test_version", "verbatim":"Fimbristylis ovata (Burm. f.) J. Kern", "normalized":"Fimbristylis ovata (Burm. f.) J. Kern", "canonical":"Fimbristylis ovata", "hybrid":false, "details":[{"genus":{"string":"Fimbristylis"}, "species":{"string":"ovata", "authorship":"(Burm. f.) J. Kern", "combinationAuthorTeam":{"authorTeam":"J. Kern", "author":["J. Kern"]}, "basionymAuthorTeam":{"authorTeam":"Burm. f.", "author":["Burm. f."]}}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 18], "20":["author_word", 25], "26":["author_word", 28], "30":["author_word", 32], "33":["author_word", 37]}}}
 Carex chordorrhiza Ehrh. ex L. f.|{"scientificName":{"id":"b972d277-3714-5549-9103-869675f490bd", "parsed":true, "parser_version":"test_version", "verbatim":"Carex chordorrhiza Ehrh. ex L. f.", "normalized":"Carex chordorrhiza Ehrh. ex L. f.", "canonical":"Carex chordorrhiza", "hybrid":false, "details":[{"genus":{"string":"Carex"}, "species":{"string":"chordorrhiza", "authorship":"Ehrh. ex L. f.", "basionymAuthorTeam":{"authorTeam":"Ehrh.", "author":["Ehrh."], "exAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}}}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 18], "19":["author_word", 24], "28":["author_word", 30], "31":["author_word", 33]}}}
 Amelanchier arborea var. arborea (Michx. f.) Fernald|{"scientificName":{"id":"1644869c-3e0c-5e7e-a709-a86dee11b917", "parsed":true, "parser_version":"test_version", "verbatim":"Amelanchier arborea var. arborea (Michx. f.) Fernald", "normalized":"Amelanchier arborea var. arborea (Michx. f.) Fernald", "canonical":"Amelanchier arborea arborea", "hybrid":false, "details":[{"genus":{"string":"Amelanchier"}, "species":{"string":"arborea"}, "infraspecies":[{"string":"arborea", "rank":"var.", "authorship":"(Michx. f.) Fernald", "combinationAuthorTeam":{"authorTeam":"Fernald", "author":["Fernald"]}, "basionymAuthorTeam":{"authorTeam":"Michx. f.", "author":["Michx. f."]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 19], "20":["infraspecific_type", 24], "25":["infraspecies", 32], "34":["author_word", 40], "41":["author_word", 43], "45":["author_word", 52]}}}

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: biodiversity
 version: !ruby/object:Gem::Version
-  version: 3.4.4
+  version: 3.4.5
 platform: ruby
 authors:
 - Dmitry Mozzherin
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-02-07 00:00:00.000000000 Z
+date: 2018-02-09 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: treetop