biodiversity 1.0.10 → 3.0.0
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- data/.rvmrc +1 -1
- data/.travis.yml +7 -0
- data/CHANGELOG +42 -0
- data/Gemfile +8 -6
- data/Gemfile.lock +33 -33
- data/README.md +167 -0
- data/Rakefile +16 -11
- data/VERSION +1 -1
- data/bin/parserver +33 -44
- data/lib/biodiversity/parser.rb +160 -33
- data/lib/biodiversity/parser/scientific_name_canonical.treetop +4 -2
- data/lib/biodiversity/parser/scientific_name_clean.treetop +479 -277
- data/lib/biodiversity/parser/scientific_name_dirty.treetop +11 -16
- data/spec/parser/scientific_name.spec.rb +63 -7
- data/spec/parser/scientific_name_clean.spec.rb +76 -24
- data/spec/parser/scientific_name_dirty.spec.rb +4 -6
- data/spec/parser/test_data.txt +132 -41
- data/spec/parser/todo.txt +27 -0
- metadata +153 -119
- data/README.rdoc +0 -99
@@ -51,7 +51,7 @@ grammar ScientificNameDirty
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/
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super
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end
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-
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+
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rule infraspecies
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a:infraspecies_string space b:year {
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def value
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@@ -115,7 +115,7 @@ grammar ScientificNameDirty
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end
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rule latin_word
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-
a:[a-z
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+
a:[a-z\-æœàâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž] b:valid_name_letters {
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def value
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res = ''
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text_value.split('').each do |l|
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@@ -123,14 +123,14 @@ grammar ScientificNameDirty
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l = 'oe' if l == 'œ'
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res << l
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end
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-
res.tr('
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-
'
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res.tr('àâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž',
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'aaaaaacceeeiiinnnoooooouuurrrsssz')
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end
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}
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end
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rule valid_name_letters
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[a-z
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[a-z\-æœàâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž]+ {
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def value
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res = ''
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text_value.split('').each do |l|
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@@ -138,15 +138,9 @@ grammar ScientificNameDirty
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l = 'oe' if l == 'œ'
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res << l
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end
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-
res.tr('
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-
'
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-
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-
}
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-
end
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-
rule valid_name_letters
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-
[a-z\-ëüäöïéåóç]+ {
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-
def value
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-
text_value
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res.tr('àâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž',
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'aaaaaacceeeiiinnnoooooouuurrrsssz')
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+
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end
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}
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end
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@@ -262,9 +256,10 @@ grammar ScientificNameDirty
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rule string_authorship_inconsistencies
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("corrig.")
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end
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-
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+
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rule garbage
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space (["'
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space (["',]) space [^щ]*
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/
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space_hard [^ш]+
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end
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@@ -1,3 +1,4 @@
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1
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# encoding: utf-8
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#NOTE: this spec needs compiled treetop files.
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dir = File.dirname("__FILE__")
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require File.expand_path(dir + '../../spec/parser/spec_helper')
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@@ -7,15 +8,33 @@ describe ScientificNameParser do
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before(:all) do
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set_parser(ScientificNameParser.new)
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end
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-
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+
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it 'should return version number' do
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ScientificNameParser.version.should =~ /^\d+\.\d+\.\d+/
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end
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it 'should ScientificNameParser::fix_case' do
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names = [
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["QUERCUS ALBA", "Quercus alba"],
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["QUERCUS (QUERCUS) ALBA", "Quercus (Quercus) alba"],
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["QÜERCUS", "Qüercus"],
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["PARDOSA MOéSTA", "Pardosa moésta"],
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]
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names.each do |name, capitalization|
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ScientificNameParser::fix_case(name).should == capitalization
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end
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end
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it 'should generate standardized json' do
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read_test_file do |y|
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JSON.load(json(y[:name])).should == JSON.load(y[:jsn]) unless y[:comment]
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end
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end
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-
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+
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# it 'should generate new test_file' do
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-
# new_test = open(File.expand_path(dir +
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# new_test = open(File.expand_path(dir +
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# "../../spec/parser/test_data_new.txt"),'w')
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# read_test_file do |y|
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# if y[:comment]
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# new_test.write y[:comment]
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@@ -26,10 +45,12 @@ describe ScientificNameParser do
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# end
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# end
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# end
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-
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+
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it 'should generate reasonable output if parser failed' do
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sn = 'ddd sljlkj 3223452432'
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json(sn).should == '{"scientificName":{"parsed":false,
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json(sn).should == '{"scientificName":{"parsed":false,' +
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'"parser_version":"test_version","verbatim":"ddd sljlkj 3223452432"}}'
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end
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it "should show version when the flag :show_version set to true" do
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parse('Homo sapiens')[:scientificName][:parser_version].should_not be_nil
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@@ -44,6 +65,40 @@ describe ScientificNameParser do
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end
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end
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describe "ScientificNameParser with ranked canonicals" do
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before(:all) do
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@parser = ScientificNameParser.new(canonical_with_rank: true)
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end
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it 'should not influence output for uninomials and binomials' do
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data = [
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['Ekbainacanthus Yakowlew 1902','Ekbainacanthus'],
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['Ekboarmia sagnesi herrerai Exposito 2007',
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'Ekboarmia sagnesi herrerai'],
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['Ekboarmia holli Oberthür', 'Ekboarmia holli']]
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data.each do |d|
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parsed = @parser.parse(d[0])[:scientificName][:canonical]
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parsed.should == d[1]
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end
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end
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it 'should preserve rank for ranked multinomials' do
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data = [
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['Cola cordifolia var. puberula A. Chev.',
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'Cola cordifolia var. puberula'],
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['Abies homolepis forma umbilicata (Mayr) Schelle',
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'Abies homolepis forma umbilicata'],
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['Quercus ilex ssp. ballota (Desf.) Samp',
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'Quercus ilex ssp. ballota']
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]
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data.each do |d|
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parsed = @parser.parse(d[0])[:scientificName][:canonical]
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parsed.should == d[1]
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end
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end
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end
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describe ParallelParser do
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it "should find number of cpus" do
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@@ -71,7 +126,8 @@ describe ParallelParser do
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res.keys.size.should == names.size
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end
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it "should have parsed name in native ruby format and in returned as
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it "should have parsed name in native ruby format and in returned as \
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a hash with name as a key and parsed data as value" do
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names = []
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read_test_file { |n| names << (n[:name]) if n[:name] }
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names.uniq!
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@@ -79,7 +135,7 @@ describe ParallelParser do
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res = pparser.parse(names)
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names.each_with_index do |name, i|
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res[name].is_a?(Hash).should be_true
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res[name][:scientificName][:verbatim].should == name
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res[name][:scientificName][:verbatim].should == name.strip
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end
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end
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end
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@@ -28,6 +28,12 @@ describe ScientificNameClean do
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details(sn).should == [{:uninomial=>{:string=>"Pseudocercospora", :authorship=>"Spegazzini, 1910", :basionymAuthorTeam=>{:authorTeam=>"Spegazzini", :author=>["Spegazzini"], :year=>"1910"}}}]
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pos(sn).should == {0=>["uninomial", 16], 17=>["author_word", 27], 29=>["year", 33]}
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end
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it "should parse uninomials with uninomial ranks" do
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sn = "Epacridaceae trib. Archerieae Crayn & Quinn"
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parse(sn).should_not be_nil
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details(sn).should == [{:uninomial=>{:string=>"Epacridaceae"}, :rank_uninomials=>"trib.", :uninomial2=>{:string=>"Archerieae", :authorship=>"Crayn & Quinn", :basionymAuthorTeam=>{:authorTeam=>"Crayn & Quinn", :author=>["Crayn", "Quinn"]}}}]
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end
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it 'should parse names with a valid 2 letter genus' do
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["Ca Dyar 1914",
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@@ -62,6 +68,16 @@ describe ScientificNameClean do
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii"}}]
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pos(sn).should == {0=>["genus", 16], 21=>["species", 30]}
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end
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it 'should parse abbreviated canonical' do
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sn = 'P. dendrobii'
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parse(sn).should_not be_nil
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value(sn).should == 'P. dendrobii'
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sn = 'Ps. dendrobii'
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parse(sn).should_not be_nil
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value(sn).should == 'Ps. dendrobii'
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details(sn).should == [{:genus=>{:string=>"Ps."}, :species=>{:string=>"dendrobii"}}]
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end
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it 'should parse species name with author and year' do
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@@ -80,6 +96,19 @@ describe ScientificNameClean do
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parse("Platypus bicaudatulus Schedl 1935").should_not be_nil
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end
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it 'should parse species name with abbreviated genus, author and year' do
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sn = "P. bicaudatulus Schedl 1935"
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parse(sn).should_not be_nil
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value(sn).should == "P. bicaudatulus Schedl 1935"
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sn = "Pl. bicaudatulus Schedl, 1935h"
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parse(sn).should_not be_nil
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value(sn).should == "Pl. bicaudatulus Schedl 1935"
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details(sn).should == [{:genus=>{:string=>"Pl."}, :species=>{:string=>"bicaudatulus", :authorship=>"Schedl, 1935h", :basionymAuthorTeam=>{:authorTeam=>"Schedl", :author=>["Schedl"], :year=>"1935"}}}]
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sn = "Pla. bicaudatulus Schedl, 1935h"
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parse(sn).should_not be_nil
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value(sn).should == "Pla. bicaudatulus Schedl 1935"
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end
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it "should parse species name with author's postfix f., filius (son of)" do
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names = [
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[ "Platypus bicaudatulus Schedl f. 1935", [{:genus=>{:string=>"Platypus"}, :species=>{:string=>"bicaudatulus", :authorship=>"Schedl f. 1935", :basionymAuthorTeam=>{:authorTeam=>"Schedl f.", :author=>["Schedl f."], :year=>"1935"}}}], 'Platypus bicaudatulus Schedl f. 1935'],
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@@ -91,9 +120,9 @@ describe ScientificNameClean do
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[ "Cerastium arvense var. fuegianum Hook.f.", [{:genus=>{:string=>"Cerastium"}, :species=>{:string=>"arvense"}, :infraspecies=>[{:string=>"fuegianum", :rank=>"var.", :authorship=>"Hook.f.", :basionymAuthorTeam=>{:authorTeam=>"Hook.f.", :author=>["Hook.f."]}}]}], 'Cerastium arvense var. fuegianum Hook.f.'],
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[ "Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.", [{:genus=>{:string=>"Cerastium"}, :species=>{:string=>"arvense"}, :infraspecies=>[{:string=>"velutinum", :rank=>"ssp."}, {:string=>"velutinum", :rank=>"var.", :authorship=>"(Raf.) Britton f.", :combinationAuthorTeam=>{:authorTeam=>"Britton f.", :author=>["Britton f."]}, :basionymAuthorTeam=>{:authorTeam=>"Raf.", :author=>["Raf."]}}]}], "Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f."],
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["Amelanchier arborea f. hirsuta (Michx. f.) Fernald", [{:infraspecies=>[{:basionymAuthorTeam=>{:author=>["Michx. f."], :authorTeam=>"Michx. f."}, :string=>"hirsuta", :rank=>"f.", :combinationAuthorTeam=>{:author=>["Fernald"], :authorTeam=>"Fernald"}, :authorship=>"(Michx. f.) Fernald"}], :genus=>{:string=>"Amelanchier"}, :species=>{:string=>"arborea"}}], "Amelanchier arborea f. hirsuta (Michx. f.) Fernald"],
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-
["Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", [{:infraspecies=>[{:basionymAuthorTeam=>{:author=>["L. f."], :authorTeam=>"L. f."}, :string=>"dalecarlica", :rank=>"
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["Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", [{:infraspecies=>[{:basionymAuthorTeam=>{:author=>["L. f."], :authorTeam=>"L. f."}, :string=>"dalecarlica", :rank=>"fo.", :combinationAuthorTeam=>{:author=>["C.K. Schneid."], :authorTeam=>"C.K. Schneid."}, :authorship=>"(L. f.) C.K. Schneid."}], :genus=>{:string=>"Betula"}, :species=>{:string=>"pendula"}}], "Betula pendula fo. dalecarlica (L. f.) C.K. Schneid."],
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["Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.", [{:genus=>{:string=>"Racomitrium"}, :species=>{:string=>"canescens"}, :infraspecies=>[{:string=>"ericoides", :rank=>"f.", :authorship=>"(F. Weber ex Brid.) Mönk.", :combinationAuthorTeam=>{:authorTeam=>"Mönk.", :author=>["Mönk."]}, :basionymAuthorTeam=>{:authorTeam=>"F. Weber", :author=>["F. Weber"], :exAuthorTeam=>{:authorTeam=>"Brid.", :author=>["Brid."]}}}]}], "Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk."],
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-
["Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", [{:genus=>{:string=>"Racomitrium"}, :species=>{:string=>"canescens"}, :infraspecies=>[{:string=>"ericoides", :rank=>"
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+
["Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", [{:genus=>{:string=>"Racomitrium"}, :species=>{:string=>"canescens"}, :infraspecies=>[{:string=>"ericoides", :rank=>"forma", :authorship=>"(F. Weber ex Brid.) Mönk.", :combinationAuthorTeam=>{:authorTeam=>"Mönk.", :author=>["Mönk."]}, :basionymAuthorTeam=>{:authorTeam=>"F. Weber", :author=>["F. Weber"], :exAuthorTeam=>{:authorTeam=>"Brid.", :author=>["Brid."]}}}]}], "Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk."],
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]
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names.each do |sn, sn_details, sn_value|
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parse(sn).should_not be_nil
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@@ -131,9 +160,9 @@ describe ScientificNameClean do
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it 'should parse names with e-umlaut' do
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133
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sn = 'Kalanchoë tuberosa'
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134
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-
canonical(sn).should == '
|
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+
canonical(sn).should == 'Kalanchoe tuberosa'
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sn = 'Isoëtes asplundii H. P. Fuchs'
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-
canonical(sn).should == '
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+
canonical(sn).should == 'Isoetes asplundii'
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166
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end
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138
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it 'should parse infragenus (ICZN code)' do
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@@ -160,17 +189,17 @@ describe ScientificNameClean do
|
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160
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it 'should parse several authors without a year' do
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sn = "Pseudocercospora dendrobii U. Braun & Crous"
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parse(sn).should_not be_nil
|
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value(sn).should == "Pseudocercospora dendrobii U. Braun
|
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+
value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous"
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canonical(sn).should == "Pseudocercospora dendrobii"
|
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"U. Braun & Crous", :basionymAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"]}}}]
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 27=>["author_word", 29], 30=>["author_word", 35], 38=>["author_word", 43]}
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sn = "Pseudocercospora dendrobii U. Braun and Crous"
|
168
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|
parse(sn).should_not be_nil
|
169
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-
value(sn).should == "Pseudocercospora dendrobii U. Braun
|
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|
+
value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous"
|
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 27=>["author_word", 29], 30=>["author_word", 35], 40=>["author_word", 45]}
|
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sn = "Pseudocercospora dendrobii U. Braun et Crous"
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parse(sn).should_not be_nil
|
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-
value(sn).should == "Pseudocercospora dendrobii U. Braun
|
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+
value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous"
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sn = "Arthopyrenia hyalospora(Nyl.)R.C. Harris"
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parse(sn).should_not be_nil
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value(sn).should == "Arthopyrenia hyalospora (Nyl.) R.C. Harris"
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@@ -181,7 +210,7 @@ describe ScientificNameClean do
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it 'should parse several authors with a year' do
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sn = "Pseudocercospora dendrobii U. Braun & Crous 2003"
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parse(sn).should_not be_nil
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value(sn).should == "Pseudocercospora dendrobii U. Braun
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value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous 2003"
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canonical(sn).should == "Pseudocercospora dendrobii"
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"U. Braun & Crous 2003", :basionymAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}}}]
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 27=>["author_word", 29], 30=>["author_word", 35], 38=>["author_word", 43], 44=>["year", 48]}
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@@ -204,23 +233,40 @@ describe ScientificNameClean do
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parse("Zophosis persis (Chatanay) 1914").should_not be_nil
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#parse("Zophosis persis Chatanay (1914)").should_not be_nil
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end
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+
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it "should be able to parse name with identificaation annotation -- aff cf sp spp" do
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sn = 'Diplocephalus aff. procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"aff.", :ignored=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Diplocephalus aff procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"aff", :ignored=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Diplocephalus affprocerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :species=>{:string=>"affprocerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}]
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sn = 'Diplocephalus cf. procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"cf.", :species=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Diplocephalus cf procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"cf", :species=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Sphingomonas sp. 37'
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details(sn).should == [{:genus=>{:string=>"Sphingomonas"}, :annotation_identification=>"sp.", :ignored=>{:unparsed=>"37"}}]
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sn = "Thryothorus leucotis spp. bogotensis"
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details(sn).should == [{:genus=>{:string=>"Thryothorus"}, :species=>{:string=>"leucotis"}, :infraspecies=>[{:annotation_identification=>"spp.", :ignored=>{:infraspecies=>{:string=>"bogotensis", :rank=>"n/a"}}}]}]
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+
end
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it 'should parse scientific name' do
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sn = "Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003"
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parse(sn).should_not be_nil
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett) U. Braun
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett) U. Braun & Crous 2003"
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canonical(sn).should == "Pseudocercospora dendrobii"
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"(H.C. Burnett)U. Braun & Crous 2003", :combinationAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}, :basionymAuthorTeam=>{:authorTeam=>"H.C. Burnett", :author=>["H.C. Burnett"]}}}]
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sn = "Pseudocercospora dendrobii(H.C. Burnett,1873)U. Braun & Crous 2003"
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parse(sn).should_not be_nil
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003"
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|
details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"(H.C. Burnett,1873)U. Braun & Crous 2003", :combinationAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}, :basionymAuthorTeam=>{:authorTeam=>"H.C. Burnett", :author=>["H.C. Burnett"], :year=>"1873"}}}]
|
218
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|
end
|
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it 'should parse several authors with several years' do
|
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sn = "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun & Crous 2003"
|
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parse(sn).should_not be_nil
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun
|
269
|
+
value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun & Crous 2003"
|
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|
canonical(sn).should == "Pseudocercospora dendrobii"
|
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|
details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"(H.C. Burnett 1883) U. Braun & Crous 2003", :combinationAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}, :basionymAuthorTeam=>{:authorTeam=>"H.C. Burnett", :author=>["H.C. Burnett"], :year=>"1883"}}}]
|
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 28=>["author_word", 32], 33=>["author_word", 40], 41=>["year", 45], 47=>["author_word", 49], 50=>["author_word", 55], 58=>["author_word", 63], 64=>["year", 68]}
|
@@ -229,7 +275,7 @@ describe ScientificNameClean do
|
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it "should parse name with subspecies without rank Zoological Code" do
|
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|
sn = "Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972"
|
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|
parse(sn).should_not be_nil
|
232
|
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value(sn).should == "Hydnellum scrobiculatum zonatum (Banker) D. Hall
|
278
|
+
value(sn).should == "Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972"
|
233
279
|
canonical(sn).should == "Hydnellum scrobiculatum zonatum"
|
234
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|
details(sn).should == [{:genus=>{:string=>"Hydnellum"}, :species=>{:string=>"scrobiculatum"}, :infraspecies=>[{:string=>"zonatum", :rank=>"n/a", :authorship=>"(Banker) D. Hall & D.E. Stuntz 1972", :combinationAuthorTeam=>{:authorTeam=>"D. Hall & D.E. Stuntz", :author=>["D. Hall", "D.E. Stuntz"], :year=>"1972"}, :basionymAuthorTeam=>{:authorTeam=>"Banker", :author=>["Banker"]}}]}]
|
235
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|
pos(sn).should == {0=>["genus", 9], 10=>["species", 23], 24=>["infraspecies", 31], 33=>["author_word", 39], 41=>["author_word", 43], 44=>["author_word", 48], 51=>["author_word", 55], 56=>["author_word", 62], 63=>["year", 67]}
|
@@ -291,17 +337,23 @@ describe ScientificNameClean do
|
|
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|
parse(sn).should_not be_nil
|
292
338
|
pos(sn).should == {0=>["genus", 4], 5=>["species", 10], 11=>["unknown_author", 14]}
|
293
339
|
end
|
340
|
+
|
341
|
+
it 'should parse normal names with hort or anon in them' do
|
342
|
+
sn = "Mus musculus hortulanus"
|
343
|
+
pr = parse(sn).should_not be_nil
|
344
|
+
pos(sn).should == {0=>["genus", 3], 4=>["species", 12], 13=>["infraspecies", 23]}
|
345
|
+
end
|
294
346
|
|
295
347
|
it 'should parse real world examples' do
|
296
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|
sn = "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
|
297
349
|
parse(sn).should_not be_nil
|
298
|
-
value(sn).should == "Stagonospora polyspora M.T. Lucas
|
350
|
+
value(sn).should == "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
|
299
351
|
details(sn).should == [{:genus=>{:string=>"Stagonospora"}, :species=>{:string=>"polyspora", :authorship=>"M.T. Lucas & Sousa da Câmara 1934", :basionymAuthorTeam=>{:authorTeam=>"M.T. Lucas & Sousa da Câmara", :author=>["M.T. Lucas", "Sousa da Câmara"], :year=>"1934"}}}]
|
300
352
|
pos(sn).should == {0=>["genus", 12], 13=>["species", 22], 23=>["author_word", 27], 28=>["author_word", 33], 36=>["author_word", 41], 42=>["author_word", 44], 45=>["author_word", 51], 52=>["year", 56]}
|
301
353
|
parse("Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001").should_not be_nil
|
302
354
|
sn = "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981"
|
303
355
|
parse(sn).should_not be_nil
|
304
|
-
value(sn).should == "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman
|
356
|
+
value(sn).should == "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981"
|
305
357
|
pos(sn).should == {0=>["genus", 8], 9=>["species", 19], 20=>["infraspecific_type", 24], 25=>["infraspecies", 35], 37=>["author_word", 42], 44=>["author_word", 52], 55=>["author_word", 59], 60=>["author_word", 66], 68=>["author_word", 71], 72=>["author_word", 75], 76=>["author_word", 80], 83=>["author_word", 86], 87=>["year", 91]}
|
306
358
|
parse("Physalospora rubiginosa (Fr.) anon.").should_not be_nil
|
307
359
|
parse("Pleurotus ëous (Berk.) Sacc. 1887").should_not be_nil
|
@@ -363,21 +415,21 @@ describe ScientificNameClean do
|
|
363
415
|
it "should parse name with forma/fo./form./f." do
|
364
416
|
sn = "Caulerpa cupressoides forma nuda"
|
365
417
|
parse(sn).should_not be_nil
|
366
|
-
value(sn).should == "Caulerpa cupressoides
|
418
|
+
value(sn).should == "Caulerpa cupressoides forma nuda"
|
367
419
|
canonical(sn).should == "Caulerpa cupressoides nuda"
|
368
|
-
details(sn).should == [{:genus=>{:string=>"Caulerpa"}, :species=>{:string=>"cupressoides"}, :infraspecies=>[{:string=>"nuda", :rank=>"
|
420
|
+
details(sn).should == [{:genus=>{:string=>"Caulerpa"}, :species=>{:string=>"cupressoides"}, :infraspecies=>[{:string=>"nuda", :rank=>"forma"}]}]
|
369
421
|
pos(sn).should == {0=>["genus", 8], 9=>["species", 21], 22=>["infraspecific_type", 27], 28=>["infraspecies", 32]}
|
370
422
|
sn = "Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó"
|
371
423
|
parse(sn).should_not be_nil
|
372
|
-
value("Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó").should == "Chlorocyperus glaber
|
424
|
+
value("Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó").should == "Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó"
|
373
425
|
canonical(sn).should == "Chlorocyperus glaber fasciculariforme"
|
374
|
-
details(sn).should == [{:genus=>{:string=>"Chlorocyperus"}, :species=>{:string=>"glaber"}, :infraspecies=>[{:string=>"fasciculariforme", :rank=>"
|
426
|
+
details(sn).should == [{:genus=>{:string=>"Chlorocyperus"}, :species=>{:string=>"glaber"}, :infraspecies=>[{:string=>"fasciculariforme", :rank=>"form.", :authorship=>"(Lojac.) Soó", :combinationAuthorTeam=>{:authorTeam=>"Soó", :author=>["Soó"]}, :basionymAuthorTeam=>{:authorTeam=>"Lojac.", :author=>["Lojac."]}}]}]
|
375
427
|
pos(sn).should == {0=>["genus", 13], 14=>["species", 20], 21=>["infraspecific_type", 26], 27=>["infraspecies", 43], 45=>["author_word", 51], 53=>["author_word", 56]}
|
376
428
|
sn = "Bambusa nana Roxb. fo. alphonse-karri (Mitford ex Satow) Makino ex Shiros."
|
377
429
|
parse(sn).should_not be_nil
|
378
|
-
value(sn).should == "Bambusa nana Roxb.
|
430
|
+
value(sn).should == "Bambusa nana Roxb. fo. alphonse-karri (Mitford ex Satow) Makino ex Shiros."
|
379
431
|
canonical(sn).should == "Bambusa nana alphonse-karri"
|
380
|
-
details(sn).should == [{:genus=>{:string=>"Bambusa"}, :species=>{:string=>"nana", :authorship=>"Roxb.", :basionymAuthorTeam=>{:authorTeam=>"Roxb.", :author=>["Roxb."]}}, :infraspecies=>[{:string=>"alphonse-karri", :rank=>"
|
432
|
+
details(sn).should == [{:genus=>{:string=>"Bambusa"}, :species=>{:string=>"nana", :authorship=>"Roxb.", :basionymAuthorTeam=>{:authorTeam=>"Roxb.", :author=>["Roxb."]}}, :infraspecies=>[{:string=>"alphonse-karri", :rank=>"fo.", :authorship=>"(Mitford ex Satow) Makino ex Shiros.", :combinationAuthorTeam=>{:authorTeam=>"Makino", :author=>["Makino"], :exAuthorTeam=>{:authorTeam=>"Shiros.", :author=>["Shiros."]}}, :basionymAuthorTeam=>{:authorTeam=>"Mitford", :author=>["Mitford"], :exAuthorTeam=>{:authorTeam=>"Satow", :author=>["Satow"]}}}]}]
|
381
433
|
pos(sn).should == {0=>["genus", 7], 8=>["species", 12], 13=>["author_word", 18], 19=>["infraspecific_type", 22], 23=>["infraspecies", 37], 39=>["author_word", 46], 50=>["author_word", 55], 57=>["author_word", 63], 67=>["author_word", 74]}
|
382
434
|
sn = " Sphaerotheca fuliginea f. dahliae Movss. 1967 "
|
383
435
|
sn = "Sphaerotheca fuliginea f. dahliae Movss. 1967"
|
@@ -392,7 +444,7 @@ describe ScientificNameClean do
|
|
392
444
|
it "should parse name with several subspecies names NOT BOTANICAL CODE BUT NOT INFREQUENT" do
|
393
445
|
sn = "Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972"
|
394
446
|
parse(sn).should_not be_nil
|
395
|
-
value(sn).should == "Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall
|
447
|
+
value(sn).should == "Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972"
|
396
448
|
details(sn).should == [{:genus=>{:string=>"Hydnellum"}, :species=>{:string=>"scrobiculatum"}, :infraspecies=>[{:string=>"zonatum", :rank=>"var."}, {:string=>"parvum", :rank=>"f.", :authorship=>"(Banker) D. Hall & D.E. Stuntz 1972", :combinationAuthorTeam=>{:authorTeam=>"D. Hall & D.E. Stuntz", :author=>["D. Hall", "D.E. Stuntz"], :year=>"1972"}, :basionymAuthorTeam=>{:authorTeam=>"Banker", :author=>["Banker"]}}]}]
|
397
449
|
pos(sn).should == {0=>["genus", 9], 10=>["species", 23], 24=>["infraspecific_type", 28], 29=>["infraspecies", 36], 37=>["infraspecific_type", 39], 40=>["infraspecies", 46], 48=>["author_word", 54], 56=>["author_word", 58], 59=>["author_word", 63], 66=>["author_word", 70], 71=>["author_word", 77], 78=>["year", 82]}
|
398
450
|
parse('Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek').should_not be_nil
|
@@ -539,8 +591,6 @@ describe ScientificNameClean do
|
|
539
591
|
parse('Dipoena yoshidai Ono, in Ono et al., 1991').should_not be_nil
|
540
592
|
sn = 'Latrodectus mactans bishopi Kaston, 1938'
|
541
593
|
details(sn).should == [{:genus=>{:string=>"Latrodectus"}, :species=>{:string=>"mactans"}, :infraspecies=>[{:string=>"bishopi", :rank=>"n/a", :authorship=>"Kaston, 1938", :basionymAuthorTeam=>{:authorTeam=>"Kaston", :author=>["Kaston"], :year=>"1938"}}]}]
|
542
|
-
sn = 'Diplocephalus aff. procerus Thaler, 1972'
|
543
|
-
details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}]
|
544
594
|
sn = 'Thiobacillus x Parker and Prisk 1953' #have to figure out black lists for this one
|
545
595
|
sn = 'Bacille de Plaut, Kritchevsky and Séguin 1921'
|
546
596
|
details(sn).should == [{:uninomial=>{:string=>"Bacille", :authorship=>"de Plaut, Kritchevsky and Séguin 1921", :basionymAuthorTeam=>{:authorTeam=>"de Plaut, Kritchevsky and Séguin", :author=>["de Plaut", "Kritchevsky", "Séguin"], :year=>"1921"}}}]
|
@@ -555,7 +605,9 @@ describe ScientificNameClean do
|
|
555
605
|
sn = 'Flexibacter elegans Soriano 1945, non Lewin 1969'
|
556
606
|
details(sn).should == [{:genus=>{:string=>"Flexibacter"}, :species=>{:string=>"elegans", :authorship=>"Soriano 1945, non Lewin 1969", :basionymAuthorTeam=>{:authorTeam=>"Soriano", :author=>["Soriano"], :year=>"1945"}}}]
|
557
607
|
sn = 'Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg'
|
558
|
-
details(sn).should == [{:genus=>{:string=>"Schottera"}, :species=>{:string=>"
|
608
|
+
details(sn).should == [{:genus=>{:string=>"Schottera"}, :species=>{:string=>"nicaeensis", :authorship=>"(J.V. Lamouroux ex Duby) Guiry & Hollenberg", :combinationAuthorTeam=>{:authorTeam=>"Guiry & Hollenberg", :author=>["Guiry", "Hollenberg"]}, :basionymAuthorTeam=>{:authorTeam=>"J.V. Lamouroux", :author=>["J.V. Lamouroux"], :exAuthorTeam=>{:authorTeam=>"Duby", :author=>["Duby"]}}}}]
|
609
|
+
sn = 'Deschampsia cespitosa ssp pumila'
|
610
|
+
details(sn).should == [{:genus=>{:string=>"Deschampsia"}, :species=>{:string=>"cespitosa"}, :infraspecies=>[{:string=>"pumila", :rank=>"ssp"}]}]
|
559
611
|
end
|
560
612
|
|
561
613
|
# Combination genus names should be merged without dash or capital letter
|
@@ -45,8 +45,8 @@ describe ScientificNameDirty do
|
|
45
45
|
it 'should parse year with page number' do
|
46
46
|
sn = "Gymnodactylus irregularis WERMUTH 1965: 54"
|
47
47
|
parse(sn).should_not be_nil
|
48
|
-
value(sn).should == "Gymnodactylus irregularis
|
49
|
-
details(sn).should == [{:genus=>{:string=>"Gymnodactylus"}, :species=>{:string=>"irregularis", :authorship=>"WERMUTH 1965: 54", :basionymAuthorTeam=>{:authorTeam=>"WERMUTH", :author=>["
|
48
|
+
value(sn).should == "Gymnodactylus irregularis Wermuth 1965"
|
49
|
+
details(sn).should == [{:genus=>{:string=>"Gymnodactylus"}, :species=>{:string=>"irregularis", :authorship=>"WERMUTH 1965: 54", :basionymAuthorTeam=>{:authorTeam=>"WERMUTH", :author=>["Wermuth"], :year=>"1965"}}}]
|
50
50
|
pos(sn).should == {0=>["genus", 13], 14=>["species", 25], 26=>["author_word", 33], 34=>["year", 38]}
|
51
51
|
end
|
52
52
|
|
@@ -74,10 +74,6 @@ describe ScientificNameDirty do
|
|
74
74
|
sn = 'Zoropsis (TaKeoa) nishimurai Yaginuma, 1971' #skipping for now
|
75
75
|
sn = 'Campylobacter pyloridis Marshall et al.1985.'
|
76
76
|
details(sn).should == [{:genus=>{:string=>"Campylobacter"}, :species=>{:string=>"pyloridis", :authorship=>"Marshall et al.1985.", :basionymAuthorTeam=>{:authorTeam=>"Marshall et al.", :author=>["Marshall et al."], :year=>"1985"}}}]
|
77
|
-
sn = 'Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).'
|
78
|
-
details(sn).should == [{:genus=>{:string=>"Staphylococcus"}, :species=>{:string=>"hyicus"}, :infraspecies=>[{:string=>"chromogenes", :rank=>"n/a", :authorship=>"Devriese et al. 1978", :basionymAuthorTeam=>{:authorTeam=>"Devriese et al.", :author=>["Devriese et al."], :year=>"1978"}}]}]
|
79
|
-
sn = 'Kitasatospora corrig. griseola Takahashi et al. 1985.'
|
80
|
-
details(sn).should == [{:genus=>{:string=>"Kitasatospora"}, :species=>{:string=>"griseola", :authorship=>"Takahashi et al. 1985.", :basionymAuthorTeam=>{:authorTeam=>"Takahashi et al.", :author=>["Takahashi et al."], :year=>"1985"}}}]
|
81
77
|
sn = 'Beijerinckia derxii venezuelae corrig. Thompson and Skerman, 1981'
|
82
78
|
details(sn).should == [{:genus=>{:string=>"Beijerinckia"}, :species=>{:string=>"derxii"}, :infraspecies=>[{:string=>"venezuelae", :rank=>"n/a", :authorship=>"Thompson and Skerman, 1981", :basionymAuthorTeam=>{:authorTeam=>"Thompson and Skerman", :author=>["Thompson", "Skerman"], :year=>"1981"}}]}]
|
83
79
|
details('Streptomyces parvisporogenes ignotus 1960').should == [{:genus=>{:string=>"Streptomyces"}, :species=>{:string=>"parvisporogenes"}, :infraspecies=>[{:string=>"ignotus", :rank=>"n/a", :year=>"1960"}]}]
|
@@ -96,6 +92,8 @@ describe ScientificNameDirty do
|
|
96
92
|
names = ["Rühlella","Sténométope laevissimus Bibron 1855", "Döringina Ihering 1929"].each do |name|
|
97
93
|
parse(name).should_not be_nil
|
98
94
|
end
|
95
|
+
details("Hirsutëlla mâle").should == [{:genus=>{:string=>"Hirsutella"}, :species=>{:string=>"male"}}]
|
96
|
+
details("Triticum repens vulgäre").should == [{:genus=>{:string=>"Triticum"}, :species=>{:string=>"repens"}, :infraspecies=>[{:string=>"vulgare", :rank=>"n/a"}]}]
|
99
97
|
end
|
100
98
|
|
101
99
|
# AsterophUa japonica
|
data/spec/parser/test_data.txt
CHANGED
@@ -9,7 +9,7 @@ Pseudocercospora|{"scientificName":{"parsed":true, "parser_version":"test_versio
|
|
9
9
|
|
10
10
|
#uninomial with author
|
11
11
|
Pseudocercospora Speg.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora Speg.","normalized":"Pseudocercospora Speg.","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"string":"Pseudocercospora","authorship":"Speg.","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."]}}}],"positions":{"0":["uninomial",16],"17":["author_word",22]}}}
|
12
|
-
Döringina Ihering 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Döringina Ihering 1929", "normalized":"Doringina Ihering 1929", "canonical":"Doringina", "hybrid":false, "details":[{"uninomial":{"string":"Doringina", "authorship":"Ihering 1929", "basionymAuthorTeam":{"authorTeam":"Ihering", "author":["Ihering"], "year":"1929"}}}], "parser_run":2, "positions":{"0":["uninomial", 9], "10":["author_word", 17], "18":["year", 22]}}}
|
12
|
+
Döringina Ihering 1929 (synonym)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Döringina Ihering 1929 (synonym)", "normalized":"Doringina Ihering 1929", "canonical":"Doringina", "hybrid":false, "details":[{"uninomial":{"string":"Doringina", "authorship":"Ihering 1929", "basionymAuthorTeam":{"authorTeam":"Ihering", "author":["Ihering"], "year":"1929"}}}], "parser_run":2, "positions":{"0":["uninomial", 9], "10":["author_word", 17], "18":["year", 22]}}}
|
13
13
|
|
14
14
|
#uninomial with author and year
|
15
15
|
Pseudocercospora Speg. 1910|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora Speg. 1910","normalized":"Pseudocercospora Speg. 1910","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"string":"Pseudocercospora","authorship":"Speg. 1910","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."],"year":"1910"}}}],"positions":{"0":["uninomial",16],"17":["author_word",22],"23":["year",27]}}}
|
@@ -33,33 +33,59 @@ Ty Bory de St. Vincent 1827|{"scientificName":{"parsed":true, "parser_version":"
|
|
33
33
|
Ua Girault 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ua Girault 1929","normalized":"Ua Girault 1929","canonical":"Ua","hybrid":false,"details":[{"uninomial":{"string":"Ua","authorship":"Girault 1929","basionymAuthorTeam":{"authorTeam":"Girault","author":["Girault"],"year":"1929"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"11":["year",15]}}}
|
34
34
|
Aa Baker 1940|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Aa Baker 1940","normalized":"Aa Baker 1940","canonical":"Aa","hybrid":false,"details":[{"uninomial":{"string":"Aa","authorship":"Baker 1940","basionymAuthorTeam":{"authorTeam":"Baker","author":["Baker"],"year":"1940"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
35
35
|
Ja Uéno 1955|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ja U\u00e9no 1955","normalized":"Ja U\u00e9no 1955","canonical":"Ja","hybrid":false,"details":[{"uninomial":{"string":"Ja","authorship":"U\u00e9no 1955","basionymAuthorTeam":{"authorTeam":"U\u00e9no","author":["U\u00e9no"],"year":"1955"}}}],"positions":{"0":["uninomial",2],"3":["author_word",7],"8":["year",12]}}}
|
36
|
-
Zu Walters & Fitch 1960|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zu Walters & Fitch 1960","normalized":"Zu Walters
|
36
|
+
Zu Walters & Fitch 1960|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zu Walters & Fitch 1960","normalized":"Zu Walters & Fitch 1960","canonical":"Zu","hybrid":false,"details":[{"uninomial":{"string":"Zu","authorship":"Walters & Fitch 1960","basionymAuthorTeam":{"authorTeam":"Walters & Fitch","author":["Walters","Fitch"],"year":"1960"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"13":["author_word",18],"19":["year",23]}}}
|
37
37
|
La Bleszynski 1966|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"La Bleszynski 1966","normalized":"La Bleszynski 1966","canonical":"La","hybrid":false,"details":[{"uninomial":{"string":"La","authorship":"Bleszynski 1966","basionymAuthorTeam":{"authorTeam":"Bleszynski","author":["Bleszynski"],"year":"1966"}}}],"positions":{"0":["uninomial",2],"3":["author_word",13],"14":["year",18]}}}
|
38
38
|
Qu Durkoop|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Qu Durkoop","normalized":"Qu Durkoop","canonical":"Qu","hybrid":false,"details":[{"uninomial":{"string":"Qu","authorship":"Durkoop","basionymAuthorTeam":{"authorTeam":"Durkoop","author":["Durkoop"]}}}],"positions":{"0":["uninomial",2],"3":["author_word",10]}}}
|
39
39
|
As Slipinski 1982|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"As Slipinski 1982","normalized":"As Slipinski 1982","canonical":"As","hybrid":false,"details":[{"uninomial":{"string":"As","authorship":"Slipinski 1982","basionymAuthorTeam":{"authorTeam":"Slipinski","author":["Slipinski"],"year":"1982"}}}],"positions":{"0":["uninomial",2],"3":["author_word",12],"13":["year",17]}}}
|
40
40
|
Ba Solem 1983|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ba Solem 1983","normalized":"Ba Solem 1983","canonical":"Ba","hybrid":false,"details":[{"uninomial":{"string":"Ba","authorship":"Solem 1983","basionymAuthorTeam":{"authorTeam":"Solem","author":["Solem"],"year":"1983"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
41
41
|
|
42
|
+
#multi-uninomials
|
43
|
+
Poaceae subtrib. Scolochloinae Soreng|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae subtrib. Scolochloinae Soreng", "normalized":"Poaceae subtrib. Scolochloinae Soreng", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"subtrib.", "uninomial2":{"string":"Scolochloinae", "authorship":"Soreng", "basionymAuthorTeam":{"authorTeam":"Soreng", "author":["Soreng"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 16], "17":["uninomial", 37]}}}
|
44
|
+
Zygophyllaceae subfam. Tribuloideae D.M.Porter|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zygophyllaceae subfam. Tribuloideae D.M.Porter", "normalized":"Zygophyllaceae subfam. Tribuloideae D.M.Porter", "canonical":"Zygophyllaceae", "hybrid":false, "details":[{"uninomial":{"string":"Zygophyllaceae"}, "rank_uninomials":"subfam.", "uninomial2":{"string":"Tribuloideae", "authorship":"D.M.Porter", "basionymAuthorTeam":{"authorTeam":"D.M.Porter", "author":["D.M.Porter"]}}}], "parser_run":1, "positions":{"0":["uninomial", 14], "15":["rank_uninomial", 22], "23":["uninomial", 46]}}}
|
45
|
+
Cordia (Adans.) Kuntze sect. Salimori|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cordia (Adans.) Kuntze sect. Salimori", "normalized":"Cordia (Adans.) Kuntze sect. Salimori", "canonical":"Cordia", "hybrid":false, "details":[{"uninomial":{"string":"Cordia", "authorship":"(Adans.) Kuntze", "combinationAuthorTeam":{"authorTeam":"Kuntze", "author":["Kuntze"]}, "basionymAuthorTeam":{"authorTeam":"Adans.", "author":["Adans."]}}, "rank_uninomials":"sect.", "uninomial2":{"string":"Salimori"}}], "parser_run":1, "positions":{"0":["uninomial", 6], "8":["author_word", 14], "16":["author_word", 22], "23":["rank_uninomial", 28], "29":["uninomial", 37]}}}
|
46
|
+
Poaceae supertrib. Arundinarodae L.Liu|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae supertrib. Arundinarodae L.Liu", "normalized":"Poaceae supertrib. Arundinarodae L.Liu", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"supertrib.", "uninomial2":{"string":"Arundinarodae", "authorship":"L.Liu", "basionymAuthorTeam":{"authorTeam":"L.Liu", "author":["L.Liu"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 18], "19":["uninomial", 38]}}}
|
47
|
+
Alchemilla subsect. Sericeae A.Plocek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alchemilla subsect. Sericeae A.Plocek", "normalized":"Alchemilla subsect. Sericeae A.Plocek", "canonical":"Alchemilla", "hybrid":false, "details":[{"uninomial":{"string":"Alchemilla"}, "rank_uninomials":"subsect.", "uninomial2":{"string":"Sericeae", "authorship":"A.Plocek", "basionymAuthorTeam":{"authorTeam":"A.Plocek", "author":["A.Plocek"]}}}], "parser_run":1, "positions":{"0":["uninomial", 10], "11":["rank_uninomial", 19], "20":["uninomial", 37]}}}
|
48
|
+
#NOTE incorrectly determined infragenus. Ambiguous placement which fits either author or infragenus.
|
49
|
+
Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon", "normalized":"Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon", "canonical":"Hymenophyllum", "hybrid":false, "details":[{"uninomial":{"string":"Hymenophyllum"}, "rank_uninomials":"subgen.", "uninomial2":{"string":"Hymenoglossum", "infragenus":{"string":"Presl"}, "authorship":"R.M.Tryon & A.Tryon", "basionymAuthorTeam":{"authorTeam":"R.M.Tryon & A.Tryon", "author":["R.M.Tryon", "A.Tryon"]}}}], "parser_run":1, "positions":{"0":["uninomial", 13], "14":["rank_uninomial", 21], "22":["uninomial", 63]}}}
|
50
|
+
Aconitum ser. Tangutica W.T. Wang|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aconitum ser. Tangutica W.T. Wang", "normalized":"Aconitum ser. Tangutica W.T. Wang", "canonical":"Aconitum", "hybrid":false, "details":[{"uninomial":{"string":"Aconitum"}, "rank_uninomials":"ser.", "uninomial2":{"string":"Tangutica", "authorship":"W.T. Wang", "basionymAuthorTeam":{"authorTeam":"W.T. Wang", "author":["W.T. Wang"]}}}], "parser_run":1, "positions":{"0":["uninomial", 8], "9":["rank_uninomial", 13], "14":["uninomial", 33]}}}
|
51
|
+
|
42
52
|
#canonical binomial
|
43
53
|
Pseudocercospora dendrobii|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii","normalized":"Pseudocercospora dendrobii","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii"}}],"positions":{"0":["genus",16],"21":["species",30]}}}
|
54
|
+
Cucurbita pepo|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cucurbita pepo", "normalized":"Cucurbita pepo", "canonical":"Cucurbita pepo", "hybrid":false, "details":[{"genus":{"string":"Cucurbita"}, "species":{"string":"pepo"}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14]}}}
|
44
55
|
|
45
56
|
#binomial with author and a year
|
46
57
|
Platypus bicaudatulus Schedl 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl 1935","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl 1935","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"29":["year",33]}}}
|
47
58
|
Platypus bicaudatulus Schedl, 1935h|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl, 1935h","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl, 1935h","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"30":["year",35]}}}
|
48
59
|
|
60
|
+
#binomial with abbreviated genus
|
61
|
+
M. alpium|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"M. alpium", "normalized":"M. alpium", "canonical":"M. alpium", "hybrid":false, "details":[{"genus":{"string":"M."}, "species":{"string":"alpium"}}], "parser_run":1, "positions":{"0":["genus", 3], "3":["species", 9]}}}
|
62
|
+
Mo. alpium (Osbeck, 1778)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mo. alpium (Osbeck, 1778)", "normalized":"Mo. alpium (Osbeck 1778)", "canonical":"Mo. alpium", "hybrid":false, "details":[{"genus":{"string":"Mo."}, "species":{"string":"alpium", "authorship":"(Osbeck, 1778)", "basionymAuthorTeam":{"authorTeam":"Osbeck", "author":["Osbeck"], "year":"1778"}}}], "parser_run":1, "positions":{"0":["genus", 4], "4":["species", 10], "12":["author_word", 18], "20":["year", 24]}}}
|
63
|
+
Mom.alpium (Osbeck, 1778)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mom.alpium (Osbeck, 1778)", "normalized":"Mom. alpium (Osbeck 1778)", "canonical":"Mom. alpium", "hybrid":false, "details":[{"genus":{"string":"Mom."}, "species":{"string":"alpium", "authorship":"(Osbeck, 1778)", "basionymAuthorTeam":{"authorTeam":"Osbeck", "author":["Osbeck"], "year":"1778"}}}], "parser_run":1, "positions":{"0":["genus", 4], "4":["species", 10], "12":["author_word", 18], "20":["year", 24]}}}
|
64
|
+
|
65
|
+
#binomial with apostrophe in species epithet
|
66
|
+
Junellia o'donelli Moldenke, 1946|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Junellia o'donelli Moldenke, 1946", "normalized":"Junellia odonelli Moldenke 1946", "canonical":"Junellia odonelli", "hybrid":false, "details":[{"genus":{"string":"Junellia"}, "species":{"string":"odonelli", "authorship":"Moldenke, 1946", "basionymAuthorTeam":{"authorTeam":"Moldenke", "author":["Moldenke"], "year":"1946"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["author_word", 27], "29":["year", 33]}}}
|
67
|
+
|
49
68
|
# whitespace names (rare, only ~50 cases)
|
50
69
|
#TODO Donatia novae zelandiae Hook.f.
|
51
70
|
#TODO Donatia novae-zelandiae Hook.f.
|
52
71
|
|
53
72
|
#binomial with several authours
|
54
|
-
|
55
|
-
Pseudocercospora dendrobii
|
56
|
-
Pseudocercospora dendrobii
|
57
|
-
|
73
|
+
Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien", "normalized":"Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien", "canonical":"Potamogeton iilinoensis ventanicola", "hybrid":false, "details":[{"genus":{"string":"Potamogeton"}, "species":{"string":"iilinoensis"}, "infraspecies":[{"string":"ventanicola", "rank":"var.", "authorship":"(Hicken) Horn af Rantzien", "combinationAuthorTeam":{"authorTeam":"Horn af Rantzien", "author":["Horn af Rantzien"]}, "basionymAuthorTeam":{"authorTeam":"Hicken", "author":["Hicken"]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 40], "42":["author_word", 48], "50":["author_word", 54], "55":["author_word", 57], "58":["author_word", 66]}}}
|
74
|
+
Pseudocercospora dendrobii Goh & W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh & W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh & W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "33":["author_word", 37], "38":["author_word", 43], "44":["year", 48]}}}
|
75
|
+
Pseudocercospora dendrobii Goh and W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh and W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh and W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh and W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "35":["author_word", 39], "40":["author_word", 45], "46":["year", 50]}}}
|
76
|
+
Pseudocercospora dendrobii Goh et W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh et W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh et W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "34":["author_word", 38], "39":["author_word", 44], "45":["year", 49]}}}
|
77
|
+
Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "normalized":"Schottera nicaeensis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "canonical":"Schottera nicaeensis", "hybrid":false, "details":[{"genus":{"string":"Schottera"}, "species":{"string":"nicaeensis", "authorship":"(J.V. Lamouroux ex Duby) Guiry & Hollenberg", "combinationAuthorTeam":{"authorTeam":"Guiry & Hollenberg", "author":["Guiry", "Hollenberg"]}, "basionymAuthorTeam":{"authorTeam":"J.V. Lamouroux", "author":["J.V. Lamouroux"], "exAuthorTeam":{"authorTeam":"Duby", "author":["Duby"]}}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 20], "22":["author_word", 26], "27":["author_word", 36], "40":["author_word", 44], "46":["author_word", 51], "54":["author_word", 64]}}}
|
78
|
+
Hirsutëlla mâle|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hirsutëlla mâle", "normalized":"Hirsutella male", "canonical":"Hirsutella male", "hybrid":false, "details":[{"genus":{"string":"Hirsutella"}, "species":{"string":"male"}}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 15]}}}
|
79
|
+
Triticum repens vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens vulgäre", "normalized":"Triticum repens vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecies", 23]}}}
|
80
|
+
Triticum repens var. vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens var. vulgäre", "normalized":"Triticum repens var. vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"var."}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecific_type", 20], "21":["infraspecies", 28]}}}
|
81
|
+
Aëtosaurus ferratus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aëtosaurus ferratus", "normalized":"Aetosaurus ferratus", "canonical":"Aetosaurus ferratus", "hybrid":false, "details":[{"genus":{"string":"Aetosaurus"}, "species":{"string":"ferratus"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 19]}}}
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58
82
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59
83
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#binomial with several authors and a year
|
60
|
-
Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun
|
84
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+
Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun & Crous 2003","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43],"44":["year",48]}}}
|
85
|
+
Torymus bangalorensis (Mani & Kurian, 1953)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Torymus bangalorensis (Mani & Kurian, 1953)", "normalized":"Torymus bangalorensis (Mani & Kurian 1953)", "canonical":"Torymus bangalorensis", "hybrid":false, "details":[{"genus":{"string":"Torymus"}, "species":{"string":"bangalorensis", "authorship":"(Mani & Kurian, 1953)", "basionymAuthorTeam":{"authorTeam":"Mani & Kurian", "author":["Mani", "Kurian"], "year":"1953"}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 21], "23":["author_word", 27], "34":["author_word", 40], "42":["year", 46]}}}
|
61
86
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62
87
|
#iczn: species name with infragenus
|
88
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+
Hegeter (Hegeter) tenuipunctatus Brullé, 1838|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hegeter (Hegeter) tenuipunctatus Brullé, 1838", "normalized":"Hegeter (Hegeter) tenuipunctatus Brullé 1838", "canonical":"Hegeter tenuipunctatus", "hybrid":false, "details":[{"genus":{"string":"Hegeter"}, "infragenus":{"string":"Hegeter"}, "species":{"string":"tenuipunctatus", "authorship":"Brullé, 1838", "basionymAuthorTeam":{"authorTeam":"Brullé", "author":["Brullé"], "year":"1838"}}}], "parser_run":1, "positions":{"0":["genus", 7], "9":["infragenus", 16], "18":["species", 32], "33":["author_word", 39], "41":["year", 45]}}}
|
63
89
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Hegeter (Hegeter) intercedens Lindberg H 1950|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hegeter (Hegeter) intercedens Lindberg H 1950","normalized":"Hegeter (Hegeter) intercedens Lindberg H 1950","canonical":"Hegeter intercedens","hybrid":false,"details":[{"genus":{"string":"Hegeter"},"infragenus":{"string":"Hegeter"},"species":{"string":"intercedens","authorship":"Lindberg H 1950","basionymAuthorTeam":{"authorTeam":"Lindberg H","author":["Lindberg H"],"year":"1950"}}}],"positions":{"0":["genus",7],"9":["infragenus",16],"18":["species",29],"30":["author_word",38],"39":["author_word",40],"41":["year",45]}}}
|
64
90
|
Brachytrypus (B.) grandidieri|{"scientificName":{"parsed":true, "verbatim":"Brachytrypus (B.) grandidieri", "normalized":"Brachytrypus (B.) grandidieri", "canonical":"Brachytrypus grandidieri", "hybrid":false, "details":[{"genus":{"string":"Brachytrypus"}, "infragenus":{"string":"B."}, "species":{"string":"grandidieri"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 12], "14":["infragenus", 16], "18":["species", 29]}}}
|
65
91
|
Cyprideis (Cyprideis) thessalonike amasyaensis|{"scientificName":{"parsed":true, "verbatim":"Cyprideis (Cyprideis) thessalonike amasyaensis", "normalized":"Cyprideis (Cyprideis) thessalonike amasyaensis", "canonical":"Cyprideis thessalonike amasyaensis", "hybrid":false, "details":[{"genus":{"string":"Cyprideis"}, "infragenus":{"string":"Cyprideis"}, "species":{"string":"thessalonike"}, "infraspecies":[{"string":"amasyaensis", "rank":"n/a"}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 9], "11":["infragenus", 20], "22":["species", 34], "35":["infraspecies", 46]}}}
|
@@ -71,9 +97,12 @@ Ferganoconcha? oblonga|{"scientificName":{"parsed":true, "parser_version":"test_
|
|
71
97
|
Rühlella|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"R\u00fchlella","normalized":"Ruhlella","canonical":"Ruhlella","hybrid":false,"details":[{"uninomial":{"string":"Ruhlella"}}],"positions":{"0":["uninomial",8]}}}
|
72
98
|
Sténométope laevissimus Bibron 1855|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"St\u00e9nom\u00e9tope laevissimus Bibron 1855","normalized":"Stenometope laevissimus Bibron 1855","canonical":"Stenometope laevissimus","hybrid":false,"details":[{"genus":{"string":"Stenometope"},"species":{"string":"laevissimus","authorship":"Bibron 1855","basionymAuthorTeam":{"authorTeam":"Bibron","author":["Bibron"],"year":"1855"}}}],"positions":{"0":["genus",11],"12":["species",23],"24":["author_word",30],"31":["year",35]}}}
|
73
99
|
Choriozopella trägårdhi Lawrence, 1947|{"scientificName":{"parsed":true, "verbatim":"Choriozopella trägårdhi Lawrence, 1947", "normalized":"Choriozopella tragardhi Lawrence 1947", "canonical":"Choriozopella tragardhi", "hybrid":false, "details":[{"genus":{"string":"Choriozopella"}, "species":{"string":"tragardhi", "authorship":"Lawrence, 1947", "basionymAuthorTeam":{"authorTeam":"Lawrence", "author":["Lawrence"], "year":"1947"}}}], "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 13], "14":["species", 23], "24":["author_word", 32], "34":["year", 38]}}}
|
74
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-
Isoëtes asplundii H. P. Fuchs|{"scientificName":{"parsed":true, "verbatim":"Isoëtes asplundii H. P. Fuchs", "normalized":"
|
75
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-
Cerambyx thomæ GMELIN J. F., 1790|{"scientificName":{"parsed":true, "verbatim":"Cerambyx thomæ GMELIN J. F., 1790", "normalized":"Cerambyx thomae
|
100
|
+
Isoëtes asplundii H. P. Fuchs|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Isoëtes asplundii H. P. Fuchs", "normalized":"Isoetes asplundii H. P. Fuchs", "canonical":"Isoetes asplundii", "hybrid":false, "details":[{"genus":{"string":"Isoetes"}, "species":{"string":"asplundii", "authorship":"H. P. Fuchs", "basionymAuthorTeam":{"authorTeam":"H. P. Fuchs", "author":["H. P. Fuchs"]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "18":["author_word", 20], "21":["author_word", 23], "24":["author_word", 29]}}}
|
101
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+
Cerambyx thomæ GMELIN J. F., 1790|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cerambyx thomæ GMELIN J. F., 1790", "normalized":"Cerambyx thomae Gmelin J. F. 1790", "canonical":"Cerambyx thomae", "hybrid":false, "details":[{"genus":{"string":"Cerambyx"}, "species":{"string":"thomae", "authorship":"GMELIN J. F., 1790", "basionymAuthorTeam":{"authorTeam":"GMELIN J. F.", "author":["Gmelin J. F."], "year":"1790"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 14], "15":["author_word", 21], "22":["author_word", 24], "25":["author_word", 27], "29":["year", 33]}}}
|
102
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+
#Campethera cailliautii fülleborni|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
|
103
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+
|
76
104
|
#digraph unicode characters
|
105
|
+
Æschopalæa grisella Pascoe, 1864|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Æschopalæa grisella Pascoe, 1864", "normalized":"Aeschopalaea grisella Pascoe 1864", "canonical":"Aeschopalaea grisella", "hybrid":false, "details":[{"genus":{"string":"Aeschopalaea"}, "species":{"string":"grisella", "authorship":"Pascoe, 1864", "basionymAuthorTeam":{"authorTeam":"Pascoe", "author":["Pascoe"], "year":"1864"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 19], "20":["author_word", 26], "28":["year", 32]}}}
|
77
106
|
Læptura laetifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"L\u00e6ptura laetifica Dow, 1913","normalized":"Laeptura laetifica Dow 1913","canonical":"Laeptura laetifica","hybrid":false,"details":[{"genus":{"string":"Laeptura"},"species":{"string":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
|
78
107
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Leptura lætifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Leptura l\u00e6tifica Dow, 1913","normalized":"Leptura laetifica Dow 1913","canonical":"Leptura laetifica","hybrid":false,"details":[{"genus":{"string":"Leptura"},"species":{"string":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",20],"22":["year",26]}}}
|
79
108
|
Leptura leætifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Leptura le\u00e6tifica Dow, 1913","normalized":"Leptura leaetifica Dow 1913","canonical":"Leptura leaetifica","hybrid":false,"details":[{"genus":{"string":"Leptura"},"species":{"string":"leaetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
|
@@ -82,31 +111,41 @@ Leœptura laetifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version"
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|
82
111
|
Ærenea cognata Lacordaire, 1872|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u00c6renea cognata Lacordaire, 1872","normalized":"Aerenea cognata Lacordaire 1872","canonical":"Aerenea cognata","hybrid":false,"details":[{"genus":{"string":"Aerenea"},"species":{"string":"cognata","authorship":"Lacordaire, 1872","basionymAuthorTeam":{"authorTeam":"Lacordaire","author":["Lacordaire"],"year":"1872"}}}],"positions":{"0":["genus",6],"7":["species",14],"15":["author_word",25],"27":["year",31]}}}
|
83
112
|
Œdicnemus capensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u0152dicnemus capensis","normalized":"Oedicnemus capensis","canonical":"Oedicnemus capensis","hybrid":false,"details":[{"genus":{"string":"Oedicnemus"},"species":{"string":"capensis"}}],"positions":{"0":["genus",9],"10":["species",18]}}}
|
84
113
|
Œnanthe œnanthe|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u0152nanthe \u0153nanthe","normalized":"Oenanthe oenanthe","canonical":"Oenanthe oenanthe","hybrid":false,"details":[{"genus":{"string":"Oenanthe"},"species":{"string":"oenanthe"}}],"positions":{"0":["genus",7],"8":["species",15]}}}
|
114
|
+
Hördeum vulgare cœrulescens|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hördeum vulgare cœrulescens", "normalized":"Hordeum vulgare coerulescens", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecies", 27]}}}
|
115
|
+
Hordeum vulgare cœrulescens Metzger|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hordeum vulgare cœrulescens Metzger", "normalized":"Hordeum vulgare coerulescens Metzger", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"n/a", "authorship":"Metzger", "basionymAuthorTeam":{"authorTeam":"Metzger", "author":["Metzger"]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecies", 27], "28":["author_word", 35]}}}
|
116
|
+
Hordeum vulgare f. cœrulescens|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hordeum vulgare f. cœrulescens", "normalized":"Hordeum vulgare f. coerulescens", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"f."}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecific_type", 18], "19":["infraspecies", 30]}}}
|
85
117
|
|
86
118
|
# old style s (ſ)
|
87
119
|
Musca domeſtica Linnaeus 1758 sec. Pemberton 1947|{"scientificName":{"parsed":true, "verbatim":"Musca domeſtica Linnaeus 1758 sec. Pemberton 1947", "normalized":"Musca domestica Linnaeus 1758", "canonical":"Musca domestica", "hybrid":false, "details":[{"genus":{"string":"Musca"}, "species":{"string":"domestica", "authorship":"Linnaeus 1758", "basionymAuthorTeam":{"authorTeam":"Linnaeus", "author":["Linnaeus"], "year":"1758"}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15], "16":["author_word", 24], "25":["year", 29]}}}
|
120
|
+
Amphisbæna fuliginoſa Linnaeus 1758|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amphisbæna fuliginoſa Linnaeus 1758", "normalized":"Amphisbaena fuliginosa Linnaeus 1758", "canonical":"Amphisbaena fuliginosa", "hybrid":false, "details":[{"genus":{"string":"Amphisbaena"}, "species":{"string":"fuliginosa", "authorship":"Linnaeus 1758", "basionymAuthorTeam":{"authorTeam":"Linnaeus", "author":["Linnaeus"], "year":"1758"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 30], "31":["year", 35]}}}
|
88
121
|
|
89
|
-
#basionym in parenthesis
|
122
|
+
#basionym author in parenthesis
|
90
123
|
Zophosis persis (Chatanay, 1914)|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay, 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay, 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"27":["year",31]}}}
|
91
124
|
Zophosis persis (Chatanay 1914)|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"26":["year",30]}}}
|
92
125
|
Zophosis persis (Chatanay), 1914|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay), 1914","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay), 1914","basionymAuthorTeam":{"author_team":"(Chatanay), 1914","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"28":["year",32]}}}
|
126
|
+
Zophosis quadrilineata (Oliv. )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zophosis quadrilineata (Oliv. )", "normalized":"Zophosis quadrilineata (Oliv.)", "canonical":"Zophosis quadrilineata", "hybrid":false, "details":[{"genus":{"string":"Zophosis"}, "species":{"string":"quadrilineata", "authorship":"(Oliv. )", "basionymAuthorTeam":{"authorTeam":"Oliv.", "author":["Oliv."]}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 22], "24":["author_word", 29]}}}
|
127
|
+
Zophosis quadrilineata (Olivier 1795)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zophosis quadrilineata (Olivier 1795)", "normalized":"Zophosis quadrilineata (Olivier 1795)", "canonical":"Zophosis quadrilineata", "hybrid":false, "details":[{"genus":{"string":"Zophosis"}, "species":{"string":"quadrilineata", "authorship":"(Olivier 1795)", "basionymAuthorTeam":{"authorTeam":"Olivier", "author":["Olivier"], "year":"1795"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 22], "24":["author_word", 31], "32":["year", 36]}}}
|
93
128
|
|
94
129
|
#binomial with basionym and combination authors
|
95
|
-
Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett) U. Braun
|
96
|
-
Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun
|
97
|
-
Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun
|
130
|
+
Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett)U. Braun & Crous 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["author_word",46],"47":["author_word",52],"55":["author_word",60],"65":["year",69]}}}
|
131
|
+
Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett, 1873)U. Braun & Crous 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"45":["year",49],"50":["author_word",52],"53":["author_word",58],"61":["author_word",66],"71":["year",75]}}}
|
132
|
+
Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett 1873)U. Braun & Crous , 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["year",48],"49":["author_word",51],"52":["author_word",57],"60":["author_word",65],"71":["year",75]}}}
|
133
|
+
Sedella pumila (Benth.) Britton & Rose|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sedella pumila (Benth.) Britton & Rose", "normalized":"Sedella pumila (Benth.) Britton & Rose", "canonical":"Sedella pumila", "hybrid":false, "details":[{"genus":{"string":"Sedella"}, "species":{"string":"pumila", "authorship":"(Benth.) Britton & Rose", "combinationAuthorTeam":{"authorTeam":"Britton & Rose", "author":["Britton", "Rose"]}, "basionymAuthorTeam":{"authorTeam":"Benth.", "author":["Benth."]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 14], "16":["author_word", 22], "24":["author_word", 31], "34":["author_word", 38]}}}
|
98
134
|
|
99
135
|
#infraspecies without rank
|
100
|
-
Hydnellum scrobiculatum zonatum (
|
101
|
-
Hydnellum
|
136
|
+
Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "normalized":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "canonical":"Hydnellum scrobiculatum zonatum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"n/a", "authorship":"(Batsch) K. A. Harrison 1961", "combinationAuthorTeam":{"authorTeam":"K. A. Harrison", "author":["K. A. Harrison"], "year":"1961"}, "basionymAuthorTeam":{"authorTeam":"Batsch", "author":["Batsch"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecies", 31], "33":["author_word", 39], "41":["author_word", 43], "44":["author_word", 46], "47":["author_word", 55], "56":["year", 60]}}}
|
137
|
+
Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31],"33":["author_word",39],"41":["author_word",43],"44":["author_word",48],"51":["author_word",55],"56":["author_word",62],"63":["year",67]}}}
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138
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+
Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"infragenus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"11":["infragenus",20],"22":["species",35],"36":["infraspecies",43],"45":["author_word",51],"53":["author_word",55],"56":["author_word",60],"63":["author_word",67],"68":["author_word",74],"75":["year",79]}}}
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Hydnellum scrobiculatum zonatum|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum","normalized":"Hydnellum scrobiculatum zonatum","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a"}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31]}}}
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140
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+
Mus musculus hortulanus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mus musculus hortulanus", "normalized":"Mus musculus hortulanus", "canonical":"Mus musculus hortulanus", "hybrid":false, "details":[{"genus":{"string":"Mus"}, "species":{"string":"musculus"}, "infraspecies":[{"string":"hortulanus", "rank":"n/a"}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 12], "13":["infraspecies", 23]}}}
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141
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+
Ortygospiza atricollis mülleri|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Ortygospiza atricollis mülleri", "normalized":"Ortygospiza atricollis mulleri", "canonical":"Ortygospiza atricollis mulleri", "hybrid":false, "details":[{"genus":{"string":"Ortygospiza"}, "species":{"string":"atricollis"}, "infraspecies":[{"string":"mulleri", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 22], "23":["infraspecies", 30]}}}
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103
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104
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#infraspecies with rank
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105
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Aus bus Linn. var. bus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aus bus Linn. var. bus", "normalized":"Aus bus Linn. var. bus", "canonical":"Aus bus bus", "hybrid":false, "details":[{"genus":{"string":"Aus"}, "species":{"string":"bus", "authorship":"Linn.", "basionymAuthorTeam":{"authorTeam":"Linn.", "author":["Linn."]}}, "infraspecies":[{"string":"bus", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 7], "8":["author_word", 13], "14":["infraspecific_type", 18], "19":["infraspecies", 22]}}}
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106
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Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987", "normalized":"Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987", "canonical":"Agalinis purpurea borealis", "hybrid":false, "details":[{"genus":{"string":"Agalinis"}, "species":{"string":"purpurea", "authorship":"(L.) Briton", "combinationAuthorTeam":{"authorTeam":"Briton", "author":["Briton"]}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"borealis", "rank":"var.", "authorship":"(Berg.) Peterson 1987", "combinationAuthorTeam":{"authorTeam":"Peterson", "author":["Peterson"], "year":"1987"}, "basionymAuthorTeam":{"authorTeam":"Berg.", "author":["Berg."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 17], "19":["author_word", 21], "23":["author_word", 29], "30":["infraspecific_type", 34], "35":["infraspecies", 43], "45":["author_word", 50], "52":["author_word", 60], "61":["year", 65]}}}
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107
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Callideriphus flavicollis morph. reductus Fuchs 1961|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Callideriphus flavicollis morph. reductus Fuchs 1961", "normalized":"Callideriphus flavicollis morph. reductus Fuchs 1961", "canonical":"Callideriphus flavicollis reductus", "hybrid":false, "details":[{"genus":{"string":"Callideriphus"}, "species":{"string":"flavicollis"}, "infraspecies":[{"string":"reductus", "rank":"morph.", "authorship":"Fuchs 1961", "basionymAuthorTeam":{"authorTeam":"Fuchs", "author":["Fuchs"], "year":"1961"}}]}], "parser_run":1, "positions":{"0":["genus", 13], "14":["species", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 41], "42":["author_word", 47], "48":["year", 52]}}}
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108
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-
Caulerpa cupressoides forma nuda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Caulerpa cupressoides forma nuda", "normalized":"Caulerpa cupressoides
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109
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-
Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó", "normalized":"Chlorocyperus glaber
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147
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+
Caulerpa cupressoides forma nuda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Caulerpa cupressoides forma nuda", "normalized":"Caulerpa cupressoides forma nuda", "canonical":"Caulerpa cupressoides nuda", "hybrid":false, "details":[{"genus":{"string":"Caulerpa"}, "species":{"string":"cupressoides"}, "infraspecies":[{"string":"nuda", "rank":"forma"}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["infraspecific_type", 27], "28":["infraspecies", 32]}}}
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148
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Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó", "normalized":"Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó", "canonical":"Chlorocyperus glaber fasciculariforme", "hybrid":false, "details":[{"genus":{"string":"Chlorocyperus"}, "species":{"string":"glaber"}, "infraspecies":[{"string":"fasciculariforme", "rank":"form.", "authorship":"(Lojac.) Soó", "combinationAuthorTeam":{"authorTeam":"Soó", "author":["Soó"]}, "basionymAuthorTeam":{"authorTeam":"Lojac.", "author":["Lojac."]}}]}], "parser_run":1, "positions":{"0":["genus", 13], "14":["species", 20], "21":["infraspecific_type", 26], "27":["infraspecies", 43], "45":["author_word", 51], "53":["author_word", 56]}}}
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110
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Sphaerotheca fuliginea f. dahliae Movss. 1967|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sphaerotheca fuliginea f. dahliae Movss. 1967", "normalized":"Sphaerotheca fuliginea f. dahliae Movss. 1967", "canonical":"Sphaerotheca fuliginea dahliae", "hybrid":false, "details":[{"genus":{"string":"Sphaerotheca"}, "species":{"string":"fuliginea"}, "infraspecies":[{"string":"dahliae", "rank":"f.", "authorship":"Movss. 1967", "basionymAuthorTeam":{"authorTeam":"Movss.", "author":["Movss."], "year":"1967"}}]}], "parser_run":1, "positions":{"0":["genus", 12], "16":["species", 25], "29":["infraspecific_type", 31], "36":["infraspecies", 43], "47":["author_word", 53], "58":["year", 62]}}}
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111
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Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "normalized":"Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "canonical":"Polypodium vulgare mantoniae", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"mantoniae", "rank":"nothosubsp.", "authorship":"(Rothm.) Schidlay", "combinationAuthorTeam":{"authorTeam":"Schidlay", "author":["Schidlay"]}, "basionymAuthorTeam":{"authorTeam":"Rothm.", "author":["Rothm."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "19":["infraspecific_type", 30], "31":["infraspecies", 40], "42":["author_word", 48], "50":["author_word", 58]}}}
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112
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Allophylus amazonicus var amazonicus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Allophylus amazonicus var amazonicus", "normalized":"Allophylus amazonicus var amazonicus", "canonical":"Allophylus amazonicus amazonicus", "hybrid":false, "details":[{"genus":{"string":"Allophylus"}, "species":{"string":"amazonicus"}, "infraspecies":[{"string":"amazonicus", "rank":"var"}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["infraspecific_type", 25], "26":["infraspecies", 36]}}}
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@@ -115,14 +154,45 @@ Polypodium pectinatum (L.) f. typica Rosenst.|{"scientificName":{"parsed":true,
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Polypodium pectinatum L. f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. typica Rosenst.", "normalized":"Polypodium pectinatum L. f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"typica", "rank":"f.", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 34], "35":["author_word", 43]}}}
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# TODO: the following phrasing can be ambiguous. Does f mean forma or filius? Currently capturing it as filius
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Polypodium pectinatum L.f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L.f. typica Rosenst.", "normalized":"Polypodium pectinatum L.f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.f.", "basionymAuthorTeam":{"authorTeam":"L.f.", "author":["L.f."]}}, "infraspecies":[{"string":"typica", "rank":"n/a", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 26], "27":["infraspecies", 33], "34":["author_word", 42]}}}
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118
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-
Polypodium pectinatum L. f.
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157
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Polypodium pectinatum L. f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. typica Rosenst.", "normalized":"Polypodium pectinatum L. f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"typica", "rank":"f.", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 34], "35":["author_word", 43]}}}
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Polypodium lineare C.Chr. f. caudatoattenuatum Takeda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "normalized":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "canonical":"Polypodium lineare caudatoattenuatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"lineare", "authorship":"C.Chr.", "basionymAuthorTeam":{"authorTeam":"C.Chr.", "author":["C.Chr."]}}, "infraspecies":[{"string":"caudatoattenuatum", "rank":"f.", "authorship":"Takeda", "basionymAuthorTeam":{"authorTeam":"Takeda", "author":["Takeda"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "19":["author_word", 25], "26":["infraspecific_type", 28], "29":["infraspecies", 46], "47":["author_word", 53]}}}
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Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "normalized":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "canonical":"Rhododendron weyrichii albiflorum", "hybrid":false, "details":[{"genus":{"string":"Rhododendron"}, "species":{"string":"weyrichii", "authorship":"Maxim.", "basionymAuthorTeam":{"authorTeam":"Maxim.", "author":["Maxim."]}}, "infraspecies":[{"string":"albiflorum", "rank":"f.", "authorship":"T.Yamaz.", "basionymAuthorTeam":{"authorTeam":"T.Yamaz.", "author":["T.Yamaz."]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 22], "23":["author_word", 29], "30":["infraspecific_type", 32], "33":["infraspecies", 43], "44":["author_word", 52]}}}
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160
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Armeria maaritima (Mill.) Willd. fma. originaria Bern.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "normalized":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "canonical":"Armeria maaritima originaria", "hybrid":false, "details":[{"genus":{"string":"Armeria"}, "species":{"string":"maaritima", "authorship":"(Mill.) Willd.", "combinationAuthorTeam":{"authorTeam":"Willd.", "author":["Willd."]}, "basionymAuthorTeam":{"authorTeam":"Mill.", "author":["Mill."]}}, "infraspecies":[{"string":"originaria", "rank":"fma.", "authorship":"Bern.", "basionymAuthorTeam":{"authorTeam":"Bern.", "author":["Bern."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 24], "26":["author_word", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 48], "49":["author_word", 54]}}}
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161
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Cotoneaster (Pyracantha) rogersiana var.aurantiaca|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cotoneaster (Pyracantha) rogersiana var.aurantiaca", "normalized":"Cotoneaster (Pyracantha) rogersiana var. aurantiaca", "canonical":"Cotoneaster rogersiana aurantiaca", "hybrid":false, "details":[{"genus":{"string":"Cotoneaster"}, "infragenus":{"string":"Pyracantha"}, "species":{"string":"rogersiana"}, "infraspecies":[{"string":"aurantiaca", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 11], "13":["infragenus", 23], "25":["species", 35], "36":["infraspecific_type", 40], "40":["infraspecies", 50]}}}
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162
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Poa annua fo varia|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poa annua fo varia", "normalized":"Poa annua fo varia", "canonical":"Poa annua varia", "hybrid":false, "details":[{"genus":{"string":"Poa"}, "species":{"string":"annua"}, "infraspecies":[{"string":"varia", "rank":"fo"}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 9], "10":["infraspecific_type", 12], "13":["infraspecies", 18]}}}
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163
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+
#TODO: Homalanthus nutans (Mull.Arg.) Benth. & Hook. f. ex Drake|{}
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121
164
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122
165
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#infraspecies_multiple
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123
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-
Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "normalized":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall
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124
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Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss.
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166
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+
Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "normalized":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "canonical":"Hydnellum scrobiculatum zonatum parvum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"var."}, {"string":"parvum", "rank":"f.", "authorship":"(Banker) D. Hall & D.E. Stuntz 1972", "combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz", "author":["D. Hall", "D.E. Stuntz"], "year":"1972"}, "basionymAuthorTeam":{"authorTeam":"Banker", "author":["Banker"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["infraspecific_type", 39], "40":["infraspecies", 46], "48":["author_word", 54], "56":["author_word", 58], "59":["author_word", 63], "66":["author_word", 70], "71":["author_word", 77], "78":["year", 82]}}}
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167
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+
Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "canonical":"Senecio fuchsii fuchsii expansus", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"fuchsii", "authorship":"C.C.Gmel.", "basionymAuthorTeam":{"authorTeam":"C.C.Gmel.", "author":["C.C.Gmel."]}}, "infraspecies":[{"string":"fuchsii", "rank":"subsp."}, {"string":"expansus", "rank":"var.", "authorship":"(Boiss. & Heldr.) Hayek", "combinationAuthorTeam":{"authorTeam":"Hayek", "author":["Hayek"]}, "basionymAuthorTeam":{"authorTeam":"Boiss. & Heldr.", "author":["Boiss.", "Heldr."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["author_word", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 40], "41":["infraspecific_type", 45], "46":["infraspecies", 54], "56":["author_word", 62], "65":["author_word", 71], "73":["author_word", 78]}}}
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125
168
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Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii", "canonical":"Senecio fuchsii fuchsii fuchsii", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"fuchsii", "authorship":"C.C.Gmel.", "basionymAuthorTeam":{"authorTeam":"C.C.Gmel.", "author":["C.C.Gmel."]}}, "infraspecies":[{"string":"fuchsii", "rank":"subsp."}, {"string":"fuchsii", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["author_word", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 40], "41":["infraspecific_type", 45], "46":["infraspecies", 53]}}}
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169
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+
Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott", "normalized":"Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott", "canonical":"Euastrum divergens rhodesiense coronulum", "hybrid":false, "details":[{"genus":{"string":"Euastrum"}, "species":{"string":"divergens"}, "infraspecies":[{"string":"rhodesiense", "rank":"var."}, {"string":"coronulum", "rank":"f.", "authorship":"A.M. Scott & Prescott", "basionymAuthorTeam":{"authorTeam":"A.M. Scott & Prescott", "author":["A.M. Scott", "Prescott"]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["infraspecific_type", 23], "24":["infraspecies", 35], "36":["infraspecific_type", 38], "39":["infraspecies", 48], "49":["author_word", 53], "54":["author_word", 59], "62":["author_word", 70]}}}
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170
|
+
|
171
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+
#species and infraspecies without epithets, comparisons
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172
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+
Acarinina aff. pentacamerata|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acarinina aff. pentacamerata", "normalized":"Acarinina", "canonical":"Acarinina", "hybrid":false, "details":[{"genus":{"string":"Acarinina"}, "annotation_identification":"aff.", "ignored":{"species":{"string":"pentacamerata"}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["annotation_identification", 14]}}}
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173
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+
Acarinina aff pentacamerata|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acarinina aff pentacamerata", "normalized":"Acarinina", "canonical":"Acarinina", "hybrid":false, "details":[{"genus":{"string":"Acarinina"}, "annotation_identification":"aff", "ignored":{"species":{"string":"pentacamerata"}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["annotation_identification", 14]}}}
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174
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+
Abturia cf. alabamensis (Morton )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abturia cf. alabamensis (Morton )", "normalized":"Abturia cf. alabamensis (Morton)", "canonical":"Abturia alabamensis", "hybrid":false, "details":[{"genus":{"string":"Abturia"}, "annotation_identification":"cf.", "species":{"species":{"string":"alabamensis", "authorship":"(Morton )", "basionymAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["annotation_identification", 11], "12":["species", 23], "25":["author_word", 31]}}}
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175
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+
Abturia cf alabamensis (Morton )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abturia cf alabamensis (Morton )", "normalized":"Abturia cf alabamensis (Morton)", "canonical":"Abturia alabamensis", "hybrid":false, "details":[{"genus":{"string":"Abturia"}, "annotation_identification":"cf", "species":{"species":{"string":"alabamensis", "authorship":"(Morton )", "basionymAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["annotation_identification", 11], "11":["species", 22], "24":["author_word", 30]}}}
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176
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+
Alyxia reinwardti var|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti var", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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177
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Alyxia reinwardti var.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti var.", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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178
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Alyxia reinwardti ssp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti ssp", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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179
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Alyxia reinwardti ssp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti ssp.", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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180
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Alaria spp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alaria spp", "normalized":"Alaria", "canonical":"Alaria", "hybrid":false, "details":[{"uninomial":{"string":"Alaria"}}], "parser_run":1, "positions":{"0":["uninomial", 6]}}}
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181
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Alaria spp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alaria spp.", "normalized":"Alaria", "canonical":"Alaria", "hybrid":false, "details":[{"uninomial":{"string":"Alaria"}}], "parser_run":1, "positions":{"0":["uninomial", 6]}}}
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182
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Xenodon sp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Xenodon sp", "normalized":"Xenodon", "canonical":"Xenodon", "hybrid":false, "details":[{"uninomial":{"string":"Xenodon"}}], "parser_run":1, "positions":{"0":["uninomial", 7]}}}
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183
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Xenodon sp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Xenodon sp.", "normalized":"Xenodon", "canonical":"Xenodon", "hybrid":false, "details":[{"uninomial":{"string":"Xenodon"}}], "parser_run":1, "positions":{"0":["uninomial", 7]}}}
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184
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Formicidae cf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Formicidae cf.", "normalized":"Formicidae", "canonical":"Formicidae", "hybrid":false, "details":[{"uninomial":{"string":"Formicidae"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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185
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Formicidae cf|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Formicidae cf", "normalized":"Formicidae", "canonical":"Formicidae", "hybrid":false, "details":[{"uninomial":{"string":"Formicidae"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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186
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+
Acastoides spp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acastoides spp.", "normalized":"Acastoides", "canonical":"Acastoides", "hybrid":false, "details":[{"uninomial":{"string":"Acastoides"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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187
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+
Sphingomonas sp. 37|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sphingomonas sp. 37", "normalized":"Sphingomonas", "canonical":"Sphingomonas", "hybrid":false, "details":[{"genus":{"string":"Sphingomonas"}, "annotation_identification":"sp.", "ignored":{"unparsed":"37"}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["annotation_identification", 16]}}}
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188
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+
Thryothorus leucotis spp. bogotensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Thryothorus leucotis spp. bogotensis", "normalized":"Thryothorus leucotis", "canonical":"Thryothorus leucotis", "hybrid":false, "details":[{"genus":{"string":"Thryothorus"}, "species":{"string":"leucotis"}, "infraspecies":[{"annotation_identification":"spp.", "ignored":{"infraspecies":{"string":"bogotensis", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["annotation_identification", 25]}}}
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189
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Endoxyla sp. GM-, 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
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190
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Liopropoma sp.2 Not applicable|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Liopropoma sp.2 Not applicable", "normalized":"Liopropoma", "canonical":"Liopropoma", "hybrid":false, "details":[{"genus":{"string":"Liopropoma"}, "annotation_identification":"sp.", "ignored":{"unparsed":"2 Not applicable"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["annotation_identification", 14]}}}
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191
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+
Lacanobia nr. subjuncta Bold:Aab, 0925|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Lacanobia nr. subjuncta Bold:Aab, 0925", "normalized":"Lacanobia", "canonical":"Lacanobia", "hybrid":false, "details":[{"genus":{"string":"Lacanobia"}, "annotation_identification":"nr.", "ignored":{"species":{"string":"subjuncta", "authorship":"Bold:Aab", "basionymAuthorTeam":{"authorTeam":"Bold:Aab", "author":["Bold:Aab"]}}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["annotation_identification", 13]}}}
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192
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Lacanobia sp. nr. subjuncta Bold:Aab, 0925|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Lacanobia sp. nr. subjuncta Bold:Aab, 0925", "normalized":"Lacanobia", "canonical":"Lacanobia", "hybrid":false, "details":[{"genus":{"string":"Lacanobia"}, "annotation_identification":"sp. nr.", "ignored":{"species":{"string":"subjuncta", "authorship":"Bold:Aab", "basionymAuthorTeam":{"authorTeam":"Bold:Aab", "author":["Bold:Aab"]}}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["annotation_identification", 17]}}}
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#Larus occidentalis cf. wymani|{}
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Calidris cf. cooperi|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Calidris cf. cooperi", "normalized":"Calidris cf. cooperi", "canonical":"Calidris cooperi", "hybrid":false, "details":[{"genus":{"string":"Calidris"}, "annotation_identification":"cf.", "species":{"species":{"string":"cooperi"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12], "13":["species", 20]}}}
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#TODO:Gemmula cf. cosmoi NP-2008 -- generates wrong authorship
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#unknown authorship
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Tragacantha leporina (?) Kuntze|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Tragacantha leporina (?) Kuntze","normalized":"Tragacantha leporina (?) Kuntze","canonical":"Tragacantha leporina","hybrid":false,"details":[{"genus":{"string":"Tragacantha"},"species":{"string":"leporina","authorship":"(?) Kuntze","combinationAuthorTeam":{"authorTeam":"Kuntze","author":["Kuntze"]},"basionymAuthorTeam":{"authorTeam":"(?)","author":["?"]}}}],"positions":{"0":["genus",11],"12":["species",20],"22":["unknown_author",23],"25":["author_word",31]}}}
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@@ -135,13 +205,13 @@ Puya acris anon.|{"scientificName":{"parsed":true, "parser_version":"test_versio
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135
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Puya acris hort.|{"scientificName":{"parsed":true, "verbatim":"Puya acris hort.", "normalized":"Puya acris", "canonical":"Puya acris", "hybrid":false, "details":[{"genus":{"string":"Puya"}, "species":{"string":"acris"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 4], "5":["species", 10]}}}
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Prunus mexicana S. Watson var. reticulata (Sarg.) Sarg.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Prunus mexicana S. Watson var. reticulata (Sarg.) Sarg.", "normalized":"Prunus mexicana S. Watson var. reticulata (Sarg.) Sarg.", "canonical":"Prunus mexicana reticulata", "hybrid":false, "details":[{"genus":{"string":"Prunus"}, "species":{"string":"mexicana", "authorship":"S. Watson", "basionymAuthorTeam":{"authorTeam":"S. Watson", "author":["S. Watson"]}}, "infraspecies":[{"string":"reticulata", "rank":"var.", "authorship":"(Sarg.) Sarg.", "combinationAuthorTeam":{"authorTeam":"Sarg.", "author":["Sarg."]}, "basionymAuthorTeam":{"authorTeam":"Sarg.", "author":["Sarg."]}}]}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 15], "16":["author_word", 18], "19":["author_word", 25], "26":["infraspecific_type", 30], "31":["infraspecies", 41], "43":["author_word", 48], "50":["author_word", 55]}}}
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#miscellaneous names
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138
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Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet", "normalized":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter
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139
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Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas
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Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas
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Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom
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142
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Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman
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208
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+
Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet", "normalized":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet", "canonical":"Fagus sylvatica orientalis", "hybrid":false, "details":[{"genus":{"string":"Fagus"}, "species":{"string":"sylvatica"}, "infraspecies":[{"string":"orientalis", "rank":"subsp.", "authorship":"(Lipsky) Greuter & Burdet", "combinationAuthorTeam":{"authorTeam":"Greuter & Burdet", "author":["Greuter", "Burdet"]}, "basionymAuthorTeam":{"authorTeam":"Lipsky", "author":["Lipsky"]}}]}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15], "16":["infraspecific_type", 22], "23":["infraspecies", 33], "35":["author_word", 41], "43":["author_word", 50], "53":["author_word", 59]}}}
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209
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Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"string":"Stagonospora"},"species":{"string":"polyspora","authorship":"M.T. Lucas & Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas & Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"36":["author_word",41],"42":["author_word",44],"45":["author_word",51],"52":["year",56]}}}
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Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"string":"Stagonospora"},"species":{"string":"polyspora","authorship":"M.T. Lucas et Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas et Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"37":["author_word",42],"43":["author_word",45],"46":["author_word",52],"53":["year",57]}}}
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+
Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","canonical":"Cladoniicola staurospora","hybrid":false,"details":[{"genus":{"string":"Cladoniicola"},"species":{"string":"staurospora","authorship":"Diederich, van den Boom & Aptroot 2001","basionymAuthorTeam":{"authorTeam":"Diederich, van den Boom & Aptroot","author":["Diederich","van den Boom","Aptroot"],"year":"2001"}}}],"positions":{"0":["genus",12],"13":["species",24],"25":["author_word",34],"36":["author_word",39],"40":["author_word",43],"44":["author_word",48],"51":["author_word",58],"59":["year",63]}}}
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Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "canonical":"Yarrowia lipolytica lipolytica", "hybrid":false, "details":[{"genus":{"string":"Yarrowia"}, "species":{"string":"lipolytica"}, "infraspecies":[{"string":"lipolytica", "rank":"var.", "authorship":"(Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "combinationAuthorTeam":{"authorTeam":"Van der Walt & Arx", "author":["Van der Walt", "Arx"], "year":"1981"}, "basionymAuthorTeam":{"authorTeam":"Wick., Kurtzman & E.A. Herrm.", "author":["Wick.", "Kurtzman", "E.A. Herrm."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19], "20":["infraspecific_type", 24], "25":["infraspecies", 35], "37":["author_word", 42], "44":["author_word", 52], "55":["author_word", 59], "60":["author_word", 66], "68":["author_word", 71], "72":["author_word", 75], "76":["author_word", 80], "83":["author_word", 86], "87":["year", 91]}}}
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Physalospora rubiginosa (Fr.) anon.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Physalospora rubiginosa (Fr.) anon.","normalized":"Physalospora rubiginosa (Fr.) anon.","canonical":"Physalospora rubiginosa","hybrid":false,"details":[{"genus":{"string":"Physalospora"},"species":{"string":"rubiginosa","authorship":"(Fr.) anon.","combinationAuthorTeam":{"authorTeam":"anon.","author":["unknown"]},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",28],"30":["unknown_author",35]}}}
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144
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Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true, "parser_version":"test_version", "
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214
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+
Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pleurotus ëous (Berk.) Sacc. 1887", "normalized":"Pleurotus eous (Berk.) Sacc. 1887", "canonical":"Pleurotus eous", "hybrid":false, "details":[{"genus":{"string":"Pleurotus"}, "species":{"string":"eous", "authorship":"(Berk.) Sacc. 1887", "combinationAuthorTeam":{"authorTeam":"Sacc.", "author":["Sacc."], "year":"1887"}, "basionymAuthorTeam":{"authorTeam":"Berk.", "author":["Berk."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14], "16":["author_word", 21], "23":["author_word", 28], "29":["year", 33]}}}
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Lecanora wetmorei Śliwa 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Lecanora wetmorei \u015aliwa 2004","normalized":"Lecanora wetmorei \u015aliwa 2004","canonical":"Lecanora wetmorei","hybrid":false,"details":[{"genus":{"string":"Lecanora"},"species":{"string":"wetmorei","authorship":"\u015aliwa 2004","basionymAuthorTeam":{"authorTeam":"\u015aliwa","author":["\u015aliwa"],"year":"2004"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"24":["year",28]}}}
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146
216
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Calicium furfuraceum * furfuraceum (L.) Pers. 1797|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797", "normalized":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797", "canonical":"Calicium furfuraceum furfuraceum", "hybrid":false, "details":[{"genus":{"string":"Calicium"}, "species":{"string":"furfuraceum"}, "infraspecies":[{"string":"furfuraceum", "rank":"*", "authorship":"(L.) Pers. 1797", "combinationAuthorTeam":{"authorTeam":"Pers.", "author":["Pers."], "year":"1797"}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 20], "21":["infraspecific_type", 22], "23":["infraspecies", 34], "36":["author_word", 38], "40":["author_word", 45], "46":["year", 50]}}}
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217
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Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882", "normalized":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882", "canonical":"Exobasidium vaccinii andromedae", "hybrid":false, "details":[{"genus":{"string":"Exobasidium"}, "species":{"string":"vaccinii"}, "infraspecies":[{"string":"andromedae", "rank":"**", "authorship":"(P. Karst.) P. Karst. 1882", "combinationAuthorTeam":{"authorTeam":"P. Karst.", "author":["P. Karst."], "year":"1882"}, "basionymAuthorTeam":{"authorTeam":"P. Karst.", "author":["P. Karst."]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["infraspecific_type", 23], "24":["infraspecies", 34], "36":["author_word", 38], "39":["author_word", 45], "47":["author_word", 49], "50":["author_word", 56], "57":["year", 61]}}}
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@@ -150,8 +220,8 @@ Cortinarius angulatus B gracilescens Fr. 1838|{"scientificName":{"parsed":true,
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150
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Cyathicula scelobelonium|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cyathicula scelobelonium","normalized":"Cyathicula scelobelonium","canonical":"Cyathicula scelobelonium","hybrid":false,"details":[{"genus":{"string":"Cyathicula"},"species":{"string":"scelobelonium"}}],"positions":{"0":["genus",10],"11":["species",24]}}}
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Tuber liui A S. Xu 1999|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Tuber liui A S. Xu 1999","normalized":"Tuber liui A S. Xu 1999","canonical":"Tuber liui","hybrid":false,"details":[{"genus":{"string":"Tuber"},"species":{"string":"liui","authorship":"A S. Xu 1999","basionymAuthorTeam":{"authorTeam":"A S. Xu","author":["A S. Xu"],"year":"1999"}}}],"positions":{"0":["genus",5],"6":["species",10],"11":["author_word",1],"13":["author_word",2],"16":["author_word",2],"19":["year",23]}}}
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Xylaria potentillae A S. Xu|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Xylaria potentillae A S. Xu","normalized":"Xylaria potentillae A S. Xu","canonical":"Xylaria potentillae","hybrid":false,"details":[{"genus":{"string":"Xylaria"},"species":{"string":"potentillae","authorship":"A S. Xu","basionymAuthorTeam":{"authorTeam":"A S. Xu","author":["A S. Xu"]}}}],"positions":{"0":["genus",7],"8":["species",19],"20":["author_word",1],"22":["author_word",2],"25":["author_word",2]}}}
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153
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Agaricus squamula Berk. & M.A. Curtis 1860|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agaricus squamula Berk. & M.A. Curtis 1860","normalized":"Agaricus squamula Berk.
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154
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Peltula coriacea Büdel, Henssen & Wessels 1986|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","normalized":"Peltula coriacea B\u00fcdel, Henssen
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223
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+
Agaricus squamula Berk. & M.A. Curtis 1860|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agaricus squamula Berk. & M.A. Curtis 1860","normalized":"Agaricus squamula Berk. & M.A. Curtis 1860","canonical":"Agaricus squamula","hybrid":false,"details":[{"genus":{"string":"Agaricus"},"species":{"string":"squamula","authorship":"Berk. & M.A. Curtis 1860","basionymAuthorTeam":{"authorTeam":"Berk. & M.A. Curtis","author":["Berk.","M.A. Curtis"],"year":"1860"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"26":["author_word",30],"31":["author_word",37],"38":["year",42]}}}
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+
Peltula coriacea Büdel, Henssen & Wessels 1986|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","normalized":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","canonical":"Peltula coriacea","hybrid":false,"details":[{"genus":{"string":"Peltula"},"species":{"string":"coriacea","authorship":"B\u00fcdel, Henssen & Wessels 1986","basionymAuthorTeam":{"authorTeam":"B\u00fcdel, Henssen & Wessels","author":["B\u00fcdel","Henssen","Wessels"],"year":"1986"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",22],"24":["author_word",31],"34":["author_word",41],"42":["year",46]}}}
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Saccharomyces drosophilae anon.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Saccharomyces drosophilae anon.","normalized":"Saccharomyces drosophilae anon.","canonical":"Saccharomyces drosophilae","hybrid":false,"details":[{"genus":{"string":"Saccharomyces"},"species":{"string":"drosophilae","authorship":"anon.","basionymAuthorTeam":{"authorTeam":"anon.","author":["unknown"]}}}],"positions":{"0":["genus",13],"14":["species",25],"26":["unknown_author",31]}}}
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Abacetus laevicollis de Chaudoir, 1869|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Abacetus laevicollis de Chaudoir, 1869","normalized":"Abacetus laevicollis de Chaudoir 1869","canonical":"Abacetus laevicollis","hybrid":false,"details":[{"genus":{"string":"Abacetus"},"species":{"string":"laevicollis","authorship":"de Chaudoir, 1869","basionymAuthorTeam":{"authorTeam":"de Chaudoir","author":["de Chaudoir"],"year":"1869"}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"24":["author_word",32],"34":["year",38]}}}
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Gastrosericus eremorum von Beaumont 1955|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Gastrosericus eremorum von Beaumont 1955","normalized":"Gastrosericus eremorum von Beaumont 1955","canonical":"Gastrosericus eremorum","hybrid":false,"details":[{"genus":{"string":"Gastrosericus"},"species":{"string":"eremorum","authorship":"von Beaumont 1955","basionymAuthorTeam":{"authorTeam":"von Beaumont","author":["von Beaumont"],"year":"1955"}}}],"positions":{"0":["genus",13],"14":["species",22],"23":["author_word",26],"27":["author_word",35],"36":["year",40]}}}
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@@ -168,7 +238,7 @@ Acanthobasidium delicatum (Wakef.) Oberw. ex Jülich 1979|{"scientificName":{"pa
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Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897","canonical":"Mycosphaerella eryngii","hybrid":false,"details":[{"genus":{"string":"Mycosphaerella"},"species":{"string":"eryngii","authorship":"(Fr. ex Duby) Johanson ex Oudem. 1897","combinationAuthorTeam":{"authorTeam":"Johanson","author":["Johanson"],"exAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."],"exAuthorTeam":{"authorTeam":"Duby","author":["Duby"]}}}}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",27],"31":["author_word",35],"37":["author_word",45],"49":["author_word",55],"56":["year",60]}}}
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Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897","canonical":"Mycosphaerella eryngii ex","hybrid":false,"details":[{"genus":{"string":"Mycosphaerella"},"species":{"string":"eryngii","authorship":"(Fr. Duby)","basionymAuthorTeam":{"authorTeam":"Fr. Duby","author":["Fr. Duby"]}},"infraspecies":[{"string":"ex","rank":"n\/a","authorship":"Oudem. 1897","basionymAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}}]}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",27],"28":["author_word",32],"34":["infraspecies",36],"37":["author_word",43],"44":["year",48]}}}
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Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897","canonical":"Mycosphaerella eryngii ex","hybrid":false,"details":[{"genus":{"string":"Mycosphaerella"},"species":{"string":"eryngii","authorship":"(Fr.ex Duby)","basionymAuthorTeam":{"authorTeam":"Fr.ex Duby","author":["Fr.ex Duby"]}},"infraspecies":[{"string":"ex","rank":"n\/a","authorship":"Oudem. 1897","basionymAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}}]}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",29],"30":["author_word",34],"36":["infraspecies",38],"39":["author_word",45],"46":["year",50]}}}
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Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937","normalized":"Salmonella werahensis (Castellani) Hauduroy
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Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937","normalized":"Salmonella werahensis (Castellani) Hauduroy & Ehringer ex Hauduroy 1937","canonical":"Salmonella werahensis","hybrid":false,"details":[{"genus":{"string":"Salmonella"},"species":{"string":"werahensis","authorship":"(Castellani) Hauduroy and Ehringer in Hauduroy 1937","combinationAuthorTeam":{"authorTeam":"Hauduroy and Ehringer","author":["Hauduroy","Ehringer"],"exAuthorTeam":{"authorTeam":"Hauduroy","author":["Hauduroy"],"year":"1937"}},"basionymAuthorTeam":{"authorTeam":"Castellani","author":["Castellani"]}}}],"positions":{"0":["genus",10],"11":["species",21],"23":["author_word",33],"35":["author_word",43],"48":["author_word",56],"60":["author_word",68],"69":["year",73]}}}
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#named hybrids
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×Agropogon P. Fourn. 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u00d7Agropogon P. Fourn. 1934","normalized":"\u00d7 Agropogon P. Fourn. 1934","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"string":"Agropogon","authorship":"P. Fourn. 1934","basionymAuthorTeam":{"authorTeam":"P. Fourn.","author":["P. Fourn."],"year":"1934"}}}],"positions":{"1":["uninomial",10],"11":["author_word",13],"14":["author_word",20],"21":["year",25]}}}
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@@ -188,12 +258,14 @@ Salix ×capreola Andersson (1867)|{"scientificName":{"parsed":true, "parser_vers
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Salix x capreola Andersson|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salix x capreola Andersson","normalized":"Salix \u00d7 capreola Andersson","canonical":"Salix capreola","hybrid":true,"details":[{"genus":{"string":"Salix"},"species":{"string":"capreola","authorship":"Andersson","basionymAuthorTeam":{"authorTeam":"Andersson","author":["Andersson"]}}}],"positions":{"0":["genus",5],"8":["species",16],"17":["author_word",26]}}}
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#hybrid formula
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Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.", "normalized":"Stanhopea tigrina Bateman ex Lindl. × S. ecornuta Lem.", "canonical":"Stanhopea tigrina × S. ecornuta", "hybrid":true, "details":[{"genus":{"string":"Stanhopea"}, "species":{"string":"tigrina", "authorship":"Bateman ex Lindl.", "basionymAuthorTeam":{"authorTeam":"Bateman", "author":["Bateman"], "exAuthorTeam":{"authorTeam":"Lindl.", "author":["Lindl."]}}}}, {"genus":{"string":"S."}, "species":{"string":"ecornuta", "authorship":"Lem.", "basionymAuthorTeam":{"authorTeam":"Lem.", "author":["Lem."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["author_word", 25], "29":["author_word", 35], "38":["genus", 41], "41":["species", 49], "50":["author_word", 54]}}}
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Arthopyrenia hyalospora X Hydnellum scrobiculatum|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora X Hydnellum scrobiculatum","normalized":"Arthopyrenia hyalospora \u00d7 Hydnellum scrobiculatum","canonical":"Arthopyrenia hyalospora × Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"}}],"positions":{"0":["genus",12],"13":["species",23],"26":["genus",35],"36":["species",49]}}}
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Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz","normalized":"Arthopyrenia hyalospora (Banker) D. Hall \u00d7 Hydnellum scrobiculatum D.E. Stuntz","canonical":"Arthopyrenia hyalospora × Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora","authorship":"(Banker) D. Hall","combinationAuthorTeam":{"authorTeam":"D. Hall","author":["D. Hall"]},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}},{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum","authorship":"D.E. Stuntz","basionymAuthorTeam":{"authorTeam":"D.E. Stuntz","author":["D.E. Stuntz"]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",31],"33":["author_word",35],"36":["author_word",40],"43":["genus",52],"53":["species",66],"67":["author_word",71],"72":["author_word",78]}}}
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Arthopyrenia hyalospora x|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora x","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
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Arthopyrenia hyalospora × ?|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora \u00d7 ?","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
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Agrostis L. × Polypogon Desf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agrostis L. \u00d7 Polypogon Desf.","normalized":"Agrostis L. \u00d7 Polypogon Desf.","canonical":"Agrostis × Polypogon","hybrid":true,"details":[{"uninomial":{"string":"Agrostis","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"uninomial":{"string":"Polypogon","authorship":"Desf.","basionymAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]}}}],"positions":{"0":["uninomial",8],"9":["author_word",11],"14":["uninomial",23],"24":["author_word",29]}}}
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Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","normalized":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","canonical":"Agrostis stolonifera × Polypogon monspeliensis","hybrid":true,"details":[{"genus":{"string":"Agrostis"},"species":{"string":"stolonifera","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"genus":{"string":"Polypogon"},"species":{"string":"monspeliensis","authorship":"(L.) Desf.","combinationAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]},"basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"26":["genus",35],"36":["species",49],"51":["author_word",53],"55":["author_word",60]}}}
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Coeloglossum viride (L.) Hartman x Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Coeloglossum viride (L.) Hartman x Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó", "normalized":"Coeloglossum viride (L.) Hartman × Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó", "canonical":"Coeloglossum viride × Dactylorhiza majalis praetermissa", "hybrid":true, "details":[{"genus":{"string":"Coeloglossum"}, "species":{"string":"viride", "authorship":"(L.) Hartman", "combinationAuthorTeam":{"authorTeam":"Hartman", "author":["Hartman"]}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}}, {"genus":{"string":"Dactylorhiza"}, "species":{"string":"majalis", "authorship":"(Rchb. f.) P.F. Hunt & Summerhayes", "combinationAuthorTeam":{"authorTeam":"P.F. Hunt & Summerhayes", "author":["P.F. Hunt", "Summerhayes"]}, "basionymAuthorTeam":{"authorTeam":"Rchb. f.", "author":["Rchb. f."]}}, "infraspecies":[{"string":"praetermissa", "rank":"ssp.", "authorship":"(Druce) D.M. Moore & Soó", "combinationAuthorTeam":{"authorTeam":"D.M. Moore & Soó", "author":["D.M. Moore", "Soó"]}, "basionymAuthorTeam":{"authorTeam":"Druce", "author":["Druce"]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 19], "21":["author_word", 23], "25":["author_word", 32], "35":["genus", 47], "48":["species", 55], "57":["author_word", 62], "63":["author_word", 65], "67":["author_word", 71], "72":["author_word", 76], "79":["author_word", 90], "91":["infraspecific_type", 95], "96":["infraspecies", 108], "110":["author_word", 115], "117":["author_word", 121], "122":["author_word", 127], "130":["author_word", 133]}}}
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#TODO Asplenium rhizophyllum X A. ruta-muraria E.L. Braun 1939|''
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#TODO Asplenium rhizophyllum DC. x ruta-muraria E.L. Braun 1939|''
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#TODO Asplenium rhizophyllum x ruta-muraria|''
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@@ -204,16 +276,15 @@ Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":
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Polypodium x vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium x vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "normalized":"Polypodium × vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "canonical":"Polypodium vulgare mantoniae", "hybrid":true, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"mantoniae", "rank":"nothosubsp.", "authorship":"(Rothm.) Schidlay", "combinationAuthorTeam":{"authorTeam":"Schidlay", "author":["Schidlay"]}, "basionymAuthorTeam":{"authorTeam":"Rothm.", "author":["Rothm."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "14":["species", 21], "22":["infraspecific_type", 33], "34":["infraspecies", 43], "45":["author_word", 51], "53":["author_word", 61]}}}
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#empty spaces
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-
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-
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Asplenium Xinexpectatum(E. L. Braun ex Friesner )Morton |{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Asplenium Xinexpectatum(E. L. Braun ex Friesner )Morton", "normalized":"Asplenium × inexpectatum (E. L. Braun ex Friesner) Morton", "canonical":"Asplenium inexpectatum", "hybrid":true, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"inexpectatum", "authorship":"(E. L. Braun ex Friesner )Morton", "combinationAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}, "basionymAuthorTeam":{"authorTeam":"E. L. Braun", "author":["E. L. Braun"], "exAuthorTeam":{"authorTeam":"Friesner", "author":["Friesner"]}}}}], "parser_run":1, "positions":{"4":["genus", 13], "21":["species", 33], "34":["author_word", 36], "37":["author_word", 39], "40":["author_word", 45], "49":["author_word", 57], "64":["author_word", 70]}}}
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####
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#
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# Names with problems
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#
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####
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-
#removing
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#removing annotations
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Acarospora cratericola cratericola Shenk 1974 group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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Acarospora cratericola cratericola Shenk 1974 species group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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Acarospora cratericola cratericola Shenk 1974 species complex|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species complex", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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@@ -237,16 +308,17 @@ Arenaria serpyllifolia L. s.str.|{"scientificName":{"parsed":true, "verbatim":"A
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Asplenium trichomanes L. s.lat. - Asplen trich|{"scientificName":{"parsed":true, "verbatim":"Asplenium trichomanes L. s.lat. - Asplen trich", "normalized":"Asplenium trichomanes L.", "canonical":"Asplenium trichomanes", "hybrid":false, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"trichomanes", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}}], "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 21], "22":["author_word", 24]}}}
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Asplenium anisophyllum Kunze, s.l.|{"scientificName":{"parsed":true, "verbatim":"Asplenium anisophyllum Kunze, s.l.", "normalized":"Asplenium anisophyllum Kunze", "canonical":"Asplenium anisophyllum", "hybrid":false, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"anisophyllum", "authorship":"Kunze", "basionymAuthorTeam":{"authorTeam":"Kunze", "author":["Kunze"]}}}], "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 22], "23":["author_word", 28]}}}
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Abramis Cuvier 1816 sec. Dybowski 1862|{"scientificName":{"parsed":true, "verbatim":"Abramis Cuvier 1816 sec. Dybowski 1862", "normalized":"Abramis Cuvier 1816", "canonical":"Abramis", "hybrid":false, "details":[{"uninomial":{"string":"Abramis", "authorship":"Cuvier 1816", "basionymAuthorTeam":{"authorTeam":"Cuvier", "author":["Cuvier"], "year":"1816"}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["uninomial", 7], "8":["author_word", 14], "15":["year", 19]}}}
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Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004", "normalized":"Abramis brama subsp. bergi Grib
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Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004", "normalized":"Abramis brama subsp. bergi Grib & Vernidub 1935", "canonical":"Abramis brama bergi", "hybrid":false, "details":[{"genus":{"string":"Abramis"}, "species":{"string":"brama"}, "infraspecies":[{"string":"bergi", "rank":"subsp.", "authorship":"Grib & Vernidub 1935", "basionymAuthorTeam":{"authorTeam":"Grib & Vernidub", "author":["Grib", "Vernidub"], "year":"1935"}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 13], "14":["infraspecific_type", 20], "21":["infraspecies", 26], "27":["author_word", 31], "34":["author_word", 42], "43":["year", 47]}}}
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Abarema clypearia (Jack) Kosterm., P. P.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., P. P.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
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Abarema clypearia (Jack) Kosterm., p.p.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., p.p.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
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Abarema clypearia (Jack) Kosterm., p. p.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., p. p.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
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-
Indigofera phyllogramme var. aphylla R.Vig., p.p.B|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Indigofera phyllogramme var. aphylla R.Vig., p.p.B", "normalized":"Indigofera phyllogramme var. aphylla R.Vig.", "canonical":"Indigofera phyllogramme aphylla", "hybrid":false, "details":[{"genus":{"string":"Indigofera"}, "species":{"string":"phyllogramme"}, "infraspecies":[{"string":"aphylla", "rank":"var.", "authorship":"R.Vig.", "basionymAuthorTeam":{"authorTeam":"R.Vig.", "author":["R.Vig."]}}]}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["author_word", 43]}}}
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315
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+
Indigofera phyllogramme var. aphylla R.Vig., p.p.B|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Indigofera phyllogramme var. aphylla R.Vig., p.p.B", "normalized":"Indigofera phyllogramme var. aphylla R.Vig.", "canonical":"Indigofera phyllogramme aphylla", "hybrid":false, "details":[{"genus":{"string":"Indigofera"}, "species":{"string":"phyllogramme"}, "infraspecies":[{"string":"aphylla", "rank":"var.", "authorship":"R.Vig.", "basionymAuthorTeam":{"authorTeam":"R.Vig.", "author":["R.Vig."]}}]}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["author_word", 43]}}}
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245
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246
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-
#removing nomenclatural
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317
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+
#removing nomenclatural annotations
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318
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+
Amphiprora pseudoduplex (Osada & Kobayasi, 1990) comb. nov.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amphiprora pseudoduplex (Osada & Kobayasi, 1990) comb. nov.", "normalized":"Amphiprora pseudoduplex (Osada & Kobayasi 1990)", "canonical":"Amphiprora pseudoduplex", "hybrid":false, "details":[{"genus":{"string":"Amphiprora"}, "species":{"string":"pseudoduplex", "authorship":"(Osada & Kobayasi, 1990)", "basionymAuthorTeam":{"authorTeam":"Osada & Kobayasi", "author":["Osada", "Kobayasi"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 23], "25":["author_word", 30], "33":["author_word", 41], "43":["year", 47]}}}
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247
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Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.|{"scientificName":{"parsed":true, "verbatim":"Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.", "normalized":"Arthopyrenia hyalospora (Nyl.) R.C. Harris", "canonical":"Arthopyrenia hyalospora", "hybrid":false, "details":[{"genus":{"string":"Arthopyrenia"}, "species":{"string":"hyalospora", "authorship":"(Nyl.) R.C. Harris", "combinationAuthorTeam":{"authorTeam":"R.C. Harris", "author":["R.C. Harris"]}, "basionymAuthorTeam":{"authorTeam":"Nyl.", "author":["Nyl."]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 23], "25":["author_word", 29], "31":["author_word", 35], "36":["author_word", 42]}}}
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248
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-
Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)|{"scientificName":{"parsed":true, "verbatim":"Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)", "normalized":"Acanthophis lancasteri
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249
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-
Acontias lineatus WAGLER 1830: 196 (nomen nudum)|{"scientificName":{"parsed":true, "verbatim":"Acontias lineatus WAGLER 1830: 196 (nomen nudum)", "normalized":"Acontias lineatus
|
320
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+
Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)", "normalized":"Acanthophis lancasteri Wells & Wellington", "canonical":"Acanthophis lancasteri", "hybrid":false, "details":[{"genus":{"string":"Acanthophis"}, "species":{"string":"lancasteri", "authorship":"WELLS & WELLINGTON", "basionymAuthorTeam":{"authorTeam":"WELLS & WELLINGTON", "author":["Wells", "Wellington"]}}}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 22], "23":["author_word", 28], "31":["author_word", 41]}}}
|
321
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+
Acontias lineatus WAGLER 1830: 196 (nomen nudum)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acontias lineatus WAGLER 1830: 196 (nomen nudum)", "normalized":"Acontias lineatus Wagler 1830", "canonical":"Acontias lineatus", "hybrid":false, "details":[{"genus":{"string":"Acontias"}, "species":{"string":"lineatus", "authorship":"WAGLER 1830: 196", "basionymAuthorTeam":{"authorTeam":"WAGLER", "author":["Wagler"], "year":"1830"}}}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 17], "18":["author_word", 24], "25":["year", 29]}}}
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250
322
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Akeratidae Nomen Nudum|{"scientificName":{"parsed":true, "verbatim":"Akeratidae Nomen Nudum", "normalized":"Akeratidae", "canonical":"Akeratidae", "hybrid":false, "details":[{"uninomial":{"string":"Akeratidae"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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251
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Aster exilis Ell., nomen dubium|{"scientificName":{"parsed":true, "verbatim":"Aster exilis Ell., nomen dubium", "normalized":"Aster exilis Ell.", "canonical":"Aster exilis", "hybrid":false, "details":[{"genus":{"string":"Aster"}, "species":{"string":"exilis", "authorship":"Ell.", "basionymAuthorTeam":{"authorTeam":"Ell.", "author":["Ell."]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 12], "13":["author_word", 17]}}}
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252
324
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Abutilon avicennae Gaertn., nom. illeg.|{"scientificName":{"parsed":true, "verbatim":"Abutilon avicennae Gaertn., nom. illeg.", "normalized":"Abutilon avicennae Gaertn.", "canonical":"Abutilon avicennae", "hybrid":false, "details":[{"genus":{"string":"Abutilon"}, "species":{"string":"avicennae", "authorship":"Gaertn.", "basionymAuthorTeam":{"authorTeam":"Gaertn.", "author":["Gaertn."]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["author_word", 26]}}}
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@@ -277,14 +349,19 @@ Fakus prioni|{"scientificName":{"parsed":true, "verbatim":"Fakus prioni", "norma
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Phi h-like viruses|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Phi h-like viruses", "virus":true}}
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278
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Viroids|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Viroids", "virus":true}}
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279
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Fungal prions|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Fungal prions", "virus":true}}
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352
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+
Human rhinovirus A11|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Human rhinovirus A11", "virus":true}}
|
353
|
+
Kobuvirus korean black goat/South Korea/2010|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Kobuvirus korean black goat/South Korea/2010", "virus":true}}
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354
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+
Australian bat lyssavirus human/AUS/1998|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Australian bat lyssavirus human/AUS/1998", "virus":true}}
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280
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#double parenthesis
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282
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Eichornia crassipes ( (Martius) ) Solms-Laub.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Eichornia crassipes ( (Martius) ) Solms-Laub.","normalized":"Eichornia crassipes (Martius) Solms-Laub.","canonical":"Eichornia crassipes","hybrid":false,"details":[{"genus":{"string":"Eichornia"},"species":{"string":"crassipes","authorship":"( (Martius) ) Solms-Laub.","combinationAuthorTeam":{"authorTeam":"Solms-Laub.","author":["Solms-Laub."]},"basionymAuthorTeam":{"authorTeam":"Martius","author":["Martius"]}}}],"positions":{"0":["genus",9],"10":["species",19],"23":["author_word",30],"34":["author_word",45]}}}
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283
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284
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#year without authorship
|
285
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Acarospora cratericola 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Acarospora cratericola 1929","normalized":"Acarospora cratericola 1929","canonical":"Acarospora cratericola","hybrid":false,"details":[{"genus":{"string":"Acarospora"},"species":{"string":"cratericola","year":"1929"}}],"positions":{"0":["genus",10],"11":["species",22],"23":["year",27]}}}
|
361
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+
Goggia gemmula 1996|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Goggia gemmula 1996", "normalized":"Goggia gemmula 1996", "canonical":"Goggia gemmula", "hybrid":false, "details":[{"genus":{"string":"Goggia"}, "species":{"string":"gemmula", "year":"1996"}}], "parser_run":2, "positions":{"0":["genus", 6], "7":["species", 14], "15":["year", 19]}}}
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286
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287
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#authorship with filius (son of)
|
364
|
+
Oxytropis minjanensis Rech. f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Oxytropis minjanensis Rech. f.", "normalized":"Oxytropis minjanensis Rech. f.", "canonical":"Oxytropis minjanensis", "hybrid":false, "details":[{"genus":{"string":"Oxytropis"}, "species":{"string":"minjanensis", "authorship":"Rech. f.", "basionymAuthorTeam":{"authorTeam":"Rech. f.", "author":["Rech. f."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 21], "22":["author_word", 27], "28":["author_word", 30]}}}
|
288
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|
Platypus bicaudatulus Schedl f. 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl f. 1935", "normalized":"Platypus bicaudatulus Schedl f. 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl f. 1935", "basionymAuthorTeam":{"authorTeam":"Schedl f.", "author":["Schedl f."], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 31], "32":["year", 36]}}}
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289
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Platypus bicaudatulus Schedl filius 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl filius 1935", "normalized":"Platypus bicaudatulus Schedl filius 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl filius 1935", "basionymAuthorTeam":{"authorTeam":"Schedl filius", "author":["Schedl filius"], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 35], "36":["year", 40]}}}
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290
367
|
Fimbristylis ovata (Burm. f.) J. Kern|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fimbristylis ovata (Burm. f.) J. Kern", "normalized":"Fimbristylis ovata (Burm. f.) J. Kern", "canonical":"Fimbristylis ovata", "hybrid":false, "details":[{"genus":{"string":"Fimbristylis"}, "species":{"string":"ovata", "authorship":"(Burm. f.) J. Kern", "combinationAuthorTeam":{"authorTeam":"J. Kern", "author":["J. Kern"]}, "basionymAuthorTeam":{"authorTeam":"Burm. f.", "author":["Burm. f."]}}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 18], "20":["author_word", 25], "26":["author_word", 28], "30":["author_word", 32], "33":["author_word", 37]}}}
|
@@ -294,14 +371,15 @@ Cerastium arvense var. fuegianum Hook. f.|{"scientificName":{"parsed":true, "par
|
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294
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Cerastium arvense var. fuegianum Hook.f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cerastium arvense var. fuegianum Hook.f.", "normalized":"Cerastium arvense var. fuegianum Hook.f.", "canonical":"Cerastium arvense fuegianum", "hybrid":false, "details":[{"genus":{"string":"Cerastium"}, "species":{"string":"arvense"}, "infraspecies":[{"string":"fuegianum", "rank":"var.", "authorship":"Hook.f.", "basionymAuthorTeam":{"authorTeam":"Hook.f.", "author":["Hook.f."]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["infraspecific_type", 22], "23":["infraspecies", 32], "33":["author_word", 40]}}}
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295
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Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.", "normalized":"Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.", "canonical":"Cerastium arvense velutinum velutinum", "hybrid":false, "details":[{"genus":{"string":"Cerastium"}, "species":{"string":"arvense"}, "infraspecies":[{"string":"velutinum", "rank":"ssp."}, {"string":"velutinum", "rank":"var.", "authorship":"(Raf.) Britton f.", "combinationAuthorTeam":{"authorTeam":"Britton f.", "author":["Britton f."]}, "basionymAuthorTeam":{"authorTeam":"Raf.", "author":["Raf."]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["infraspecific_type", 22], "23":["infraspecies", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 47], "49":["author_word", 53], "55":["author_word", 62], "63":["author_word", 65]}}}
|
296
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|
Amelanchier arborea f. hirsuta (Michx. f.) Fernald|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amelanchier arborea f. hirsuta (Michx. f.) Fernald", "normalized":"Amelanchier arborea f. hirsuta (Michx. f.) Fernald", "canonical":"Amelanchier arborea hirsuta", "hybrid":false, "details":[{"genus":{"string":"Amelanchier"}, "species":{"string":"arborea"}, "infraspecies":[{"string":"hirsuta", "rank":"f.", "authorship":"(Michx. f.) Fernald", "combinationAuthorTeam":{"authorTeam":"Fernald", "author":["Fernald"]}, "basionymAuthorTeam":{"authorTeam":"Michx. f.", "author":["Michx. f."]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 19], "20":["infraspecific_type", 22], "23":["infraspecies", 30], "32":["author_word", 38], "39":["author_word", 41], "43":["author_word", 50]}}}
|
297
|
-
Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", "normalized":"Betula pendula
|
374
|
+
Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", "normalized":"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", "canonical":"Betula pendula dalecarlica", "hybrid":false, "details":[{"genus":{"string":"Betula"}, "species":{"string":"pendula"}, "infraspecies":[{"string":"dalecarlica", "rank":"fo.", "authorship":"(L. f.) C.K. Schneid.", "combinationAuthorTeam":{"authorTeam":"C.K. Schneid.", "author":["C.K. Schneid."]}, "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}]}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 14], "15":["infraspecific_type", 18], "19":["infraspecies", 30], "32":["author_word", 34], "35":["author_word", 37], "39":["author_word", 43], "44":["author_word", 52]}}}
|
298
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|
Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.", "normalized":"Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.", "canonical":"Racomitrium canescens ericoides", "hybrid":false, "details":[{"genus":{"string":"Racomitrium"}, "species":{"string":"canescens"}, "infraspecies":[{"string":"ericoides", "rank":"f.", "authorship":"(F. Weber ex Brid.) Mönk.", "combinationAuthorTeam":{"authorTeam":"Mönk.", "author":["Mönk."]}, "basionymAuthorTeam":{"authorTeam":"F. Weber", "author":["F. Weber"], "exAuthorTeam":{"authorTeam":"Brid.", "author":["Brid."]}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 21], "22":["infraspecific_type", 24], "25":["infraspecies", 34], "36":["author_word", 38], "39":["author_word", 44], "48":["author_word", 53], "55":["author_word", 60]}}}
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299
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-
Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", "normalized":"Racomitrium canescens
|
376
|
+
Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", "normalized":"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", "canonical":"Racomitrium canescens ericoides", "hybrid":false, "details":[{"genus":{"string":"Racomitrium"}, "species":{"string":"canescens"}, "infraspecies":[{"string":"ericoides", "rank":"forma", "authorship":"(F. Weber ex Brid.) Mönk.", "combinationAuthorTeam":{"authorTeam":"Mönk.", "author":["Mönk."]}, "basionymAuthorTeam":{"authorTeam":"F. Weber", "author":["F. Weber"], "exAuthorTeam":{"authorTeam":"Brid.", "author":["Brid."]}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 21], "22":["infraspecific_type", 27], "28":["infraspecies", 37], "39":["author_word", 41], "42":["author_word", 47], "51":["author_word", 56], "58":["author_word", 63]}}}
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300
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|
Polypodium pectinatum L. f., Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f., Rosenst.", "normalized":"Polypodium pectinatum L. f., Rosenst.", "canonical":"Polypodium pectinatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L. f., Rosenst.", "basionymAuthorTeam":{"authorTeam":"L. f., Rosenst.", "author":["L. f.", "Rosenst."]}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["author_word", 27], "29":["author_word", 37]}}}
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301
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|
Polypodium pectinatum L. f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f.", "normalized":"Polypodium pectinatum L. f.", "canonical":"Polypodium pectinatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L. f.", "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["author_word", 27]}}}
|
302
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|
Polypodium pectinatum (L. f.) typica Rosent|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum (L. f.) typica Rosent", "normalized":"Polypodium pectinatum (L. f.) typica Rosent", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"(L. f.)", "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}, "infraspecies":[{"string":"typica", "rank":"n/a", "authorship":"Rosent", "basionymAuthorTeam":{"authorTeam":"Rosent", "author":["Rosent"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "23":["author_word", 25], "26":["author_word", 28], "30":["infraspecies", 36], "37":["author_word", 43]}}}
|
303
380
|
|
304
381
|
#year range
|
382
|
+
Eurodryas orientalis Herrich-Schäffer 1845-1847|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Eurodryas orientalis Herrich-Schäffer 1845-1847", "normalized":"Eurodryas orientalis Herrich-Schäffer 1845-1847", "canonical":"Eurodryas orientalis", "hybrid":false, "details":[{"genus":{"string":"Eurodryas"}, "species":{"string":"orientalis", "authorship":"Herrich-Schäffer 1845-1847", "basionymAuthorTeam":{"authorTeam":"Herrich-Schäffer", "author":["Herrich-Schäffer"], "year":"1845-1847"}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 20], "21":["author_word", 37], "38":["year", 47]}}}
|
305
383
|
Tridentella tangeroae Bruce, 1987-92|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Tridentella tangeroae Bruce, 1987-92","normalized":"Tridentella tangeroae Bruce 1987-92","canonical":"Tridentella tangeroae","hybrid":false,"details":[{"genus":{"string":"Tridentella"},"species":{"string":"tangeroae","authorship":"Bruce, 1987-92","basionymAuthorTeam":{"authorTeam":"Bruce","author":["Bruce"],"year":"1987-92"}}}],"positions":{"0":["genus",11],"12":["species",21],"22":["author_word",27],"29":["year",36]}}}
|
306
384
|
|
307
385
|
#year in square brackets
|
@@ -319,7 +397,20 @@ Morea (Morea) Burt 2342343242 23424322342 23424234|{"scientificName":{"parsed":t
|
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319
397
|
Nautilus asterizans von|{"scientificName":{"parsed":true, "verbatim":"Nautilus asterizans von", "normalized":"Nautilus asterizans", "canonical":"Nautilus asterizans", "hybrid":false, "details":[{"genus":{"string":"Nautilus"}, "species":{"string":"asterizans"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19]}}}
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320
398
|
|
321
399
|
#salvage canonical
|
322
|
-
Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true, "parser_version":"test_version", "
|
400
|
+
Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Morea ssjjlajajaj324$33 234243242", "normalized":"Morea", "canonical":"Morea", "hybrid":false, "details":[{"uninomial":{"string":"Morea"}}], "parser_run":2, "positions":{"0":["uninomial", 5]}}}
|
323
401
|
Morea (Morea) burtius 2342343242 23424322342 23424234|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Morea (Morea) burtius 2342343242 23424322342 23424234","normalized":"Morea (Morea) burtius","canonical":"Morea burtius","hybrid":false,"details":[{"genus":{"string":"Morea"},"infragenus":{"string":"Morea"},"species":{"string":"burtius"}}],"positions":{"0":["genus",5],"7":["infragenus",12],"14":["species",21]}}}
|
324
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|
Verpericola megasoma ""Dall" Pils.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Verpericola megasoma \"\"Dall\" Pils.","normalized":"Verpericola megasoma","canonical":"Verpericola megasoma","hybrid":false,"details":[{"genus":{"string":"Verpericola"},"species":{"string":"megasoma"}}],"positions":{"0":["genus",11],"12":["species",20]}}}
|
403
|
+
Verpericola megasoma "Dall" Pils.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Verpericola megasoma \"Dall\" Pils.", "normalized":"Verpericola megasoma", "canonical":"Verpericola megasoma", "hybrid":false, "details":[{"genus":{"string":"Verpericola"}, "species":{"string":"megasoma"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 20]}}}
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325
404
|
Moraea spathulata ( (L. f. Klatt|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Moraea spathulata ( (L. f. Klatt","normalized":"Moraea spathulata","canonical":"Moraea spathulata","hybrid":false,"details":[{"genus":{"string":"Moraea"},"species":{"string":"spathulata"}}],"positions":{"0":["genus",6],"7":["species",17]}}}
|
405
|
+
Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.", "normalized":"Stewartia micrantha (Chun) Sealy, Bot. Mag.", "canonical":"Stewartia micrantha", "hybrid":false, "details":[{"genus":{"string":"Stewartia"}, "species":{"string":"micrantha", "authorship":"(Chun) Sealy, Bot. Mag.", "combinationAuthorTeam":{"authorTeam":"Sealy, Bot. Mag.", "author":["Sealy", "Bot. Mag."]}, "basionymAuthorTeam":{"authorTeam":"Chun", "author":["Chun"]}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 19], "21":["author_word", 25], "27":["author_word", 32], "34":["author_word", 38], "39":["author_word", 43]}}}
|
406
|
+
Pyrobaculum neutrophilum V24Sta|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pyrobaculum neutrophilum V24Sta", "normalized":"Pyrobaculum neutrophilum", "canonical":"Pyrobaculum neutrophilum", "hybrid":false, "details":[{"genus":{"string":"Pyrobaculum"}, "species":{"string":"neutrophilum"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 24]}}}
|
407
|
+
Rana aurora Baird and Girard, 1852; H.B. Shaffer et al., 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rana aurora Baird and Girard, 1852; H.B. Shaffer et al., 2004", "normalized":"Rana aurora Baird & Girard", "canonical":"Rana aurora", "hybrid":false, "details":[{"genus":{"string":"Rana"}, "species":{"string":"aurora", "authorship":"Baird and Girard", "basionymAuthorTeam":{"authorTeam":"Baird and Girard", "author":["Baird", "Girard"]}}}], "parser_run":2, "positions":{"0":["genus", 4], "5":["species", 11], "12":["author_word", 17], "22":["author_word", 28]}}}
|
408
|
+
Agropyron pectiniforme var. karabaljikji ined.?|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Agropyron pectiniforme var. karabaljikji ined.?", "normalized":"Agropyron pectiniforme var. karabaljikji", "canonical":"Agropyron pectiniforme karabaljikji", "hybrid":false, "details":[{"genus":{"string":"Agropyron"}, "species":{"string":"pectiniforme"}, "infraspecies":[{"string":"karabaljikji", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 22], "23":["infraspecific_type", 27], "28":["infraspecies", 40]}}}
|
409
|
+
Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).", "normalized":"Staphylococcus hyicus chromogenes Devriese et al. 1978", "canonical":"Staphylococcus hyicus chromogenes", "hybrid":false, "details":[{"genus":{"string":"Staphylococcus"}, "species":{"string":"hyicus"}, "infraspecies":[{"string":"chromogenes", "rank":"n/a", "authorship":"Devriese et al. 1978", "basionymAuthorTeam":{"authorTeam":"Devriese et al.", "author":["Devriese et al."], "year":"1978"}}]}], "parser_run":2, "positions":{"0":["genus", 14], "15":["species", 21], "22":["infraspecies", 33], "34":["author_word", 42], "43":["author_word", 49], "50":["year", 54]}}}
|
410
|
+
Kerana var. cameroni|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Kerana var. cameroni", "normalized":"Kerana", "canonical":"Kerana", "hybrid":false, "details":[{"uninomial":{"string":"Kerana"}}], "parser_run":2, "positions":{"0":["uninomial", 6]}}}
|
411
|
+
|
412
|
+
#should parse names which previously caused prolems:
|
413
|
+
Buteo borealis ? ventralis|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Buteo borealis ? ventralis", "normalized":"Buteo borealis", "canonical":"Buteo borealis", "hybrid":false, "details":[{"genus":{"string":"Buteo"}, "species":{"string":"borealis"}, "infraspecies":[{"annotation_identification":"?", "ignored":{"infraspecies":{"string":"ventralis", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 14], "15":["annotation_identification", 17]}}}
|
414
|
+
Cetraria islandica ? islandica|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cetraria islandica ? islandica", "normalized":"Cetraria islandica", "canonical":"Cetraria islandica", "hybrid":false, "details":[{"genus":{"string":"Cetraria"}, "species":{"string":"islandica"}, "infraspecies":[{"annotation_identification":"?", "ignored":{"infraspecies":{"string":"islandica", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["annotation_identification", 21]}}}
|
415
|
+
Euxoa nr. idahoensis sp. 1clay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Euxoa nr. idahoensis sp. 1clay", "normalized":"Euxoa idahoensis", "canonical":"Euxoa idahoensis", "hybrid":false, "details":[{"genus":{"string":"Euxoa"}, "species":{"string":"idahoensis"}, "infraspecies":[{"annotation_identification":"sp.", "ignored":{"infraspecies":{"string":"uniclay", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 5], "10":["species", 20], "21":["annotation_identification", 24]}}}
|
416
|
+
Parus caeruleus species complex|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Parus caeruleus species complex", "normalized":"Parus caeruleus", "canonical":"Parus caeruleus", "hybrid":false, "details":[{"genus":{"string":"Parus"}, "species":{"string":"caeruleus"}}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15]}}}
|