biodiversity 1.0.10 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.rvmrc +1 -1
- data/.travis.yml +7 -0
- data/CHANGELOG +42 -0
- data/Gemfile +8 -6
- data/Gemfile.lock +33 -33
- data/README.md +167 -0
- data/Rakefile +16 -11
- data/VERSION +1 -1
- data/bin/parserver +33 -44
- data/lib/biodiversity/parser.rb +160 -33
- data/lib/biodiversity/parser/scientific_name_canonical.treetop +4 -2
- data/lib/biodiversity/parser/scientific_name_clean.treetop +479 -277
- data/lib/biodiversity/parser/scientific_name_dirty.treetop +11 -16
- data/spec/parser/scientific_name.spec.rb +63 -7
- data/spec/parser/scientific_name_clean.spec.rb +76 -24
- data/spec/parser/scientific_name_dirty.spec.rb +4 -6
- data/spec/parser/test_data.txt +132 -41
- data/spec/parser/todo.txt +27 -0
- metadata +153 -119
- data/README.rdoc +0 -99
@@ -51,7 +51,7 @@ grammar ScientificNameDirty
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/
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super
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end
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-
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+
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rule infraspecies
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a:infraspecies_string space b:year {
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def value
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@@ -115,7 +115,7 @@ grammar ScientificNameDirty
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end
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rule latin_word
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-
a:[a-z
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a:[a-z\-æœàâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž] b:valid_name_letters {
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def value
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res = ''
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text_value.split('').each do |l|
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@@ -123,14 +123,14 @@ grammar ScientificNameDirty
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l = 'oe' if l == 'œ'
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res << l
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end
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-
res.tr('
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'
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res.tr('àâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž',
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'aaaaaacceeeiiinnnoooooouuurrrsssz')
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end
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}
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end
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rule valid_name_letters
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[a-z
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[a-z\-æœàâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž]+ {
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def value
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res = ''
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text_value.split('').each do |l|
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@@ -138,15 +138,9 @@ grammar ScientificNameDirty
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l = 'oe' if l == 'œ'
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res << l
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end
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-
res.tr('
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'
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-
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}
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end
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-
rule valid_name_letters
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[a-z\-ëüäöïéåóç]+ {
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def value
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text_value
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res.tr('àâåãäáçčëéèíìïňññóòôøõöúùüŕřŗššşž',
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'aaaaaacceeeiiinnnoooooouuurrrsssz')
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end
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}
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end
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@@ -262,9 +256,10 @@ grammar ScientificNameDirty
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rule string_authorship_inconsistencies
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("corrig.")
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end
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-
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+
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rule garbage
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space (["'
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space (["',]) space [^щ]*
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/
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space_hard [^ш]+
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end
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@@ -1,3 +1,4 @@
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# encoding: utf-8
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#NOTE: this spec needs compiled treetop files.
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dir = File.dirname("__FILE__")
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require File.expand_path(dir + '../../spec/parser/spec_helper')
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@@ -7,15 +8,33 @@ describe ScientificNameParser do
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before(:all) do
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set_parser(ScientificNameParser.new)
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end
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-
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it 'should return version number' do
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ScientificNameParser.version.should =~ /^\d+\.\d+\.\d+/
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end
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it 'should ScientificNameParser::fix_case' do
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names = [
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["QUERCUS ALBA", "Quercus alba"],
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["QUERCUS (QUERCUS) ALBA", "Quercus (Quercus) alba"],
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["QÜERCUS", "Qüercus"],
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["PARDOSA MOéSTA", "Pardosa moésta"],
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]
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names.each do |name, capitalization|
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ScientificNameParser::fix_case(name).should == capitalization
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end
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end
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it 'should generate standardized json' do
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read_test_file do |y|
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JSON.load(json(y[:name])).should == JSON.load(y[:jsn]) unless y[:comment]
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end
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end
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-
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+
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# it 'should generate new test_file' do
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# new_test = open(File.expand_path(dir +
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# new_test = open(File.expand_path(dir +
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# "../../spec/parser/test_data_new.txt"),'w')
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# read_test_file do |y|
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# if y[:comment]
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# new_test.write y[:comment]
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# end
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# end
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# end
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-
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it 'should generate reasonable output if parser failed' do
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sn = 'ddd sljlkj 3223452432'
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json(sn).should == '{"scientificName":{"parsed":false,
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json(sn).should == '{"scientificName":{"parsed":false,' +
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'"parser_version":"test_version","verbatim":"ddd sljlkj 3223452432"}}'
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end
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it "should show version when the flag :show_version set to true" do
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parse('Homo sapiens')[:scientificName][:parser_version].should_not be_nil
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end
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end
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describe "ScientificNameParser with ranked canonicals" do
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before(:all) do
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@parser = ScientificNameParser.new(canonical_with_rank: true)
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end
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it 'should not influence output for uninomials and binomials' do
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data = [
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['Ekbainacanthus Yakowlew 1902','Ekbainacanthus'],
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['Ekboarmia sagnesi herrerai Exposito 2007',
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'Ekboarmia sagnesi herrerai'],
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['Ekboarmia holli Oberthür', 'Ekboarmia holli']]
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data.each do |d|
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parsed = @parser.parse(d[0])[:scientificName][:canonical]
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parsed.should == d[1]
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end
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end
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it 'should preserve rank for ranked multinomials' do
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data = [
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['Cola cordifolia var. puberula A. Chev.',
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'Cola cordifolia var. puberula'],
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['Abies homolepis forma umbilicata (Mayr) Schelle',
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'Abies homolepis forma umbilicata'],
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['Quercus ilex ssp. ballota (Desf.) Samp',
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'Quercus ilex ssp. ballota']
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]
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data.each do |d|
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parsed = @parser.parse(d[0])[:scientificName][:canonical]
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parsed.should == d[1]
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end
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end
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end
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describe ParallelParser do
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it "should find number of cpus" do
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res.keys.size.should == names.size
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end
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it "should have parsed name in native ruby format and in returned as
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it "should have parsed name in native ruby format and in returned as \
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a hash with name as a key and parsed data as value" do
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names = []
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read_test_file { |n| names << (n[:name]) if n[:name] }
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names.uniq!
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res = pparser.parse(names)
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names.each_with_index do |name, i|
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res[name].is_a?(Hash).should be_true
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res[name][:scientificName][:verbatim].should == name
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res[name][:scientificName][:verbatim].should == name.strip
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end
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end
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end
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details(sn).should == [{:uninomial=>{:string=>"Pseudocercospora", :authorship=>"Spegazzini, 1910", :basionymAuthorTeam=>{:authorTeam=>"Spegazzini", :author=>["Spegazzini"], :year=>"1910"}}}]
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pos(sn).should == {0=>["uninomial", 16], 17=>["author_word", 27], 29=>["year", 33]}
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end
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it "should parse uninomials with uninomial ranks" do
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sn = "Epacridaceae trib. Archerieae Crayn & Quinn"
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parse(sn).should_not be_nil
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details(sn).should == [{:uninomial=>{:string=>"Epacridaceae"}, :rank_uninomials=>"trib.", :uninomial2=>{:string=>"Archerieae", :authorship=>"Crayn & Quinn", :basionymAuthorTeam=>{:authorTeam=>"Crayn & Quinn", :author=>["Crayn", "Quinn"]}}}]
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end
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it 'should parse names with a valid 2 letter genus' do
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["Ca Dyar 1914",
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii"}}]
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pos(sn).should == {0=>["genus", 16], 21=>["species", 30]}
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end
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it 'should parse abbreviated canonical' do
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sn = 'P. dendrobii'
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parse(sn).should_not be_nil
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value(sn).should == 'P. dendrobii'
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sn = 'Ps. dendrobii'
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parse(sn).should_not be_nil
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value(sn).should == 'Ps. dendrobii'
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details(sn).should == [{:genus=>{:string=>"Ps."}, :species=>{:string=>"dendrobii"}}]
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end
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it 'should parse species name with author and year' do
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parse("Platypus bicaudatulus Schedl 1935").should_not be_nil
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end
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it 'should parse species name with abbreviated genus, author and year' do
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sn = "P. bicaudatulus Schedl 1935"
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parse(sn).should_not be_nil
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value(sn).should == "P. bicaudatulus Schedl 1935"
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sn = "Pl. bicaudatulus Schedl, 1935h"
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parse(sn).should_not be_nil
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value(sn).should == "Pl. bicaudatulus Schedl 1935"
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details(sn).should == [{:genus=>{:string=>"Pl."}, :species=>{:string=>"bicaudatulus", :authorship=>"Schedl, 1935h", :basionymAuthorTeam=>{:authorTeam=>"Schedl", :author=>["Schedl"], :year=>"1935"}}}]
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sn = "Pla. bicaudatulus Schedl, 1935h"
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parse(sn).should_not be_nil
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value(sn).should == "Pla. bicaudatulus Schedl 1935"
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end
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it "should parse species name with author's postfix f., filius (son of)" do
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names = [
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[ "Platypus bicaudatulus Schedl f. 1935", [{:genus=>{:string=>"Platypus"}, :species=>{:string=>"bicaudatulus", :authorship=>"Schedl f. 1935", :basionymAuthorTeam=>{:authorTeam=>"Schedl f.", :author=>["Schedl f."], :year=>"1935"}}}], 'Platypus bicaudatulus Schedl f. 1935'],
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[ "Cerastium arvense var. fuegianum Hook.f.", [{:genus=>{:string=>"Cerastium"}, :species=>{:string=>"arvense"}, :infraspecies=>[{:string=>"fuegianum", :rank=>"var.", :authorship=>"Hook.f.", :basionymAuthorTeam=>{:authorTeam=>"Hook.f.", :author=>["Hook.f."]}}]}], 'Cerastium arvense var. fuegianum Hook.f.'],
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[ "Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.", [{:genus=>{:string=>"Cerastium"}, :species=>{:string=>"arvense"}, :infraspecies=>[{:string=>"velutinum", :rank=>"ssp."}, {:string=>"velutinum", :rank=>"var.", :authorship=>"(Raf.) Britton f.", :combinationAuthorTeam=>{:authorTeam=>"Britton f.", :author=>["Britton f."]}, :basionymAuthorTeam=>{:authorTeam=>"Raf.", :author=>["Raf."]}}]}], "Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f."],
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["Amelanchier arborea f. hirsuta (Michx. f.) Fernald", [{:infraspecies=>[{:basionymAuthorTeam=>{:author=>["Michx. f."], :authorTeam=>"Michx. f."}, :string=>"hirsuta", :rank=>"f.", :combinationAuthorTeam=>{:author=>["Fernald"], :authorTeam=>"Fernald"}, :authorship=>"(Michx. f.) Fernald"}], :genus=>{:string=>"Amelanchier"}, :species=>{:string=>"arborea"}}], "Amelanchier arborea f. hirsuta (Michx. f.) Fernald"],
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["Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", [{:infraspecies=>[{:basionymAuthorTeam=>{:author=>["L. f."], :authorTeam=>"L. f."}, :string=>"dalecarlica", :rank=>"
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["Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", [{:infraspecies=>[{:basionymAuthorTeam=>{:author=>["L. f."], :authorTeam=>"L. f."}, :string=>"dalecarlica", :rank=>"fo.", :combinationAuthorTeam=>{:author=>["C.K. Schneid."], :authorTeam=>"C.K. Schneid."}, :authorship=>"(L. f.) C.K. Schneid."}], :genus=>{:string=>"Betula"}, :species=>{:string=>"pendula"}}], "Betula pendula fo. dalecarlica (L. f.) C.K. Schneid."],
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["Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.", [{:genus=>{:string=>"Racomitrium"}, :species=>{:string=>"canescens"}, :infraspecies=>[{:string=>"ericoides", :rank=>"f.", :authorship=>"(F. Weber ex Brid.) Mönk.", :combinationAuthorTeam=>{:authorTeam=>"Mönk.", :author=>["Mönk."]}, :basionymAuthorTeam=>{:authorTeam=>"F. Weber", :author=>["F. Weber"], :exAuthorTeam=>{:authorTeam=>"Brid.", :author=>["Brid."]}}}]}], "Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk."],
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["Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", [{:genus=>{:string=>"Racomitrium"}, :species=>{:string=>"canescens"}, :infraspecies=>[{:string=>"ericoides", :rank=>"
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["Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", [{:genus=>{:string=>"Racomitrium"}, :species=>{:string=>"canescens"}, :infraspecies=>[{:string=>"ericoides", :rank=>"forma", :authorship=>"(F. Weber ex Brid.) Mönk.", :combinationAuthorTeam=>{:authorTeam=>"Mönk.", :author=>["Mönk."]}, :basionymAuthorTeam=>{:authorTeam=>"F. Weber", :author=>["F. Weber"], :exAuthorTeam=>{:authorTeam=>"Brid.", :author=>["Brid."]}}}]}], "Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk."],
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]
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names.each do |sn, sn_details, sn_value|
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parse(sn).should_not be_nil
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it 'should parse names with e-umlaut' do
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sn = 'Kalanchoë tuberosa'
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canonical(sn).should == '
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canonical(sn).should == 'Kalanchoe tuberosa'
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sn = 'Isoëtes asplundii H. P. Fuchs'
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canonical(sn).should == '
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canonical(sn).should == 'Isoetes asplundii'
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end
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it 'should parse infragenus (ICZN code)' do
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it 'should parse several authors without a year' do
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sn = "Pseudocercospora dendrobii U. Braun & Crous"
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parse(sn).should_not be_nil
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value(sn).should == "Pseudocercospora dendrobii U. Braun
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value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous"
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canonical(sn).should == "Pseudocercospora dendrobii"
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"U. Braun & Crous", :basionymAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"]}}}]
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 27=>["author_word", 29], 30=>["author_word", 35], 38=>["author_word", 43]}
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sn = "Pseudocercospora dendrobii U. Braun and Crous"
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parse(sn).should_not be_nil
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value(sn).should == "Pseudocercospora dendrobii U. Braun
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value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous"
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 27=>["author_word", 29], 30=>["author_word", 35], 40=>["author_word", 45]}
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sn = "Pseudocercospora dendrobii U. Braun et Crous"
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parse(sn).should_not be_nil
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value(sn).should == "Pseudocercospora dendrobii U. Braun
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value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous"
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sn = "Arthopyrenia hyalospora(Nyl.)R.C. Harris"
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parse(sn).should_not be_nil
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value(sn).should == "Arthopyrenia hyalospora (Nyl.) R.C. Harris"
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@@ -181,7 +210,7 @@ describe ScientificNameClean do
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it 'should parse several authors with a year' do
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sn = "Pseudocercospora dendrobii U. Braun & Crous 2003"
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parse(sn).should_not be_nil
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value(sn).should == "Pseudocercospora dendrobii U. Braun
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value(sn).should == "Pseudocercospora dendrobii U. Braun & Crous 2003"
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canonical(sn).should == "Pseudocercospora dendrobii"
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"U. Braun & Crous 2003", :basionymAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}}}]
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pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 27=>["author_word", 29], 30=>["author_word", 35], 38=>["author_word", 43], 44=>["year", 48]}
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@@ -204,23 +233,40 @@ describe ScientificNameClean do
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parse("Zophosis persis (Chatanay) 1914").should_not be_nil
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#parse("Zophosis persis Chatanay (1914)").should_not be_nil
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end
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+
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it "should be able to parse name with identificaation annotation -- aff cf sp spp" do
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sn = 'Diplocephalus aff. procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"aff.", :ignored=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Diplocephalus aff procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"aff", :ignored=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Diplocephalus affprocerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :species=>{:string=>"affprocerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}]
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sn = 'Diplocephalus cf. procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"cf.", :species=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Diplocephalus cf procerus Thaler, 1972'
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details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :annotation_identification=>"cf", :species=>{:species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}}]
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sn = 'Sphingomonas sp. 37'
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details(sn).should == [{:genus=>{:string=>"Sphingomonas"}, :annotation_identification=>"sp.", :ignored=>{:unparsed=>"37"}}]
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sn = "Thryothorus leucotis spp. bogotensis"
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details(sn).should == [{:genus=>{:string=>"Thryothorus"}, :species=>{:string=>"leucotis"}, :infraspecies=>[{:annotation_identification=>"spp.", :ignored=>{:infraspecies=>{:string=>"bogotensis", :rank=>"n/a"}}}]}]
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+
end
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it 'should parse scientific name' do
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sn = "Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003"
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parse(sn).should_not be_nil
|
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|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett) U. Braun
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett) U. Braun & Crous 2003"
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canonical(sn).should == "Pseudocercospora dendrobii"
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details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"(H.C. Burnett)U. Braun & Crous 2003", :combinationAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}, :basionymAuthorTeam=>{:authorTeam=>"H.C. Burnett", :author=>["H.C. Burnett"]}}}]
|
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sn = "Pseudocercospora dendrobii(H.C. Burnett,1873)U. Braun & Crous 2003"
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parse(sn).should_not be_nil
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun
|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003"
|
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|
details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"(H.C. Burnett,1873)U. Braun & Crous 2003", :combinationAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}, :basionymAuthorTeam=>{:authorTeam=>"H.C. Burnett", :author=>["H.C. Burnett"], :year=>"1873"}}}]
|
218
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|
end
|
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|
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it 'should parse several authors with several years' do
|
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sn = "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun & Crous 2003"
|
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|
parse(sn).should_not be_nil
|
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|
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value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun
|
269
|
+
value(sn).should == "Pseudocercospora dendrobii (H.C. Burnett 1883) U. Braun & Crous 2003"
|
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|
canonical(sn).should == "Pseudocercospora dendrobii"
|
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|
details(sn).should == [{:genus=>{:string=>"Pseudocercospora"}, :species=>{:string=>"dendrobii", :authorship=>"(H.C. Burnett 1883) U. Braun & Crous 2003", :combinationAuthorTeam=>{:authorTeam=>"U. Braun & Crous", :author=>["U. Braun", "Crous"], :year=>"2003"}, :basionymAuthorTeam=>{:authorTeam=>"H.C. Burnett", :author=>["H.C. Burnett"], :year=>"1883"}}}]
|
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|
pos(sn).should == {0=>["genus", 16], 17=>["species", 26], 28=>["author_word", 32], 33=>["author_word", 40], 41=>["year", 45], 47=>["author_word", 49], 50=>["author_word", 55], 58=>["author_word", 63], 64=>["year", 68]}
|
@@ -229,7 +275,7 @@ describe ScientificNameClean do
|
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|
it "should parse name with subspecies without rank Zoological Code" do
|
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|
sn = "Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972"
|
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|
parse(sn).should_not be_nil
|
232
|
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value(sn).should == "Hydnellum scrobiculatum zonatum (Banker) D. Hall
|
278
|
+
value(sn).should == "Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972"
|
233
279
|
canonical(sn).should == "Hydnellum scrobiculatum zonatum"
|
234
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|
details(sn).should == [{:genus=>{:string=>"Hydnellum"}, :species=>{:string=>"scrobiculatum"}, :infraspecies=>[{:string=>"zonatum", :rank=>"n/a", :authorship=>"(Banker) D. Hall & D.E. Stuntz 1972", :combinationAuthorTeam=>{:authorTeam=>"D. Hall & D.E. Stuntz", :author=>["D. Hall", "D.E. Stuntz"], :year=>"1972"}, :basionymAuthorTeam=>{:authorTeam=>"Banker", :author=>["Banker"]}}]}]
|
235
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|
pos(sn).should == {0=>["genus", 9], 10=>["species", 23], 24=>["infraspecies", 31], 33=>["author_word", 39], 41=>["author_word", 43], 44=>["author_word", 48], 51=>["author_word", 55], 56=>["author_word", 62], 63=>["year", 67]}
|
@@ -291,17 +337,23 @@ describe ScientificNameClean do
|
|
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|
parse(sn).should_not be_nil
|
292
338
|
pos(sn).should == {0=>["genus", 4], 5=>["species", 10], 11=>["unknown_author", 14]}
|
293
339
|
end
|
340
|
+
|
341
|
+
it 'should parse normal names with hort or anon in them' do
|
342
|
+
sn = "Mus musculus hortulanus"
|
343
|
+
pr = parse(sn).should_not be_nil
|
344
|
+
pos(sn).should == {0=>["genus", 3], 4=>["species", 12], 13=>["infraspecies", 23]}
|
345
|
+
end
|
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346
|
|
295
347
|
it 'should parse real world examples' do
|
296
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|
sn = "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
|
297
349
|
parse(sn).should_not be_nil
|
298
|
-
value(sn).should == "Stagonospora polyspora M.T. Lucas
|
350
|
+
value(sn).should == "Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934"
|
299
351
|
details(sn).should == [{:genus=>{:string=>"Stagonospora"}, :species=>{:string=>"polyspora", :authorship=>"M.T. Lucas & Sousa da Câmara 1934", :basionymAuthorTeam=>{:authorTeam=>"M.T. Lucas & Sousa da Câmara", :author=>["M.T. Lucas", "Sousa da Câmara"], :year=>"1934"}}}]
|
300
352
|
pos(sn).should == {0=>["genus", 12], 13=>["species", 22], 23=>["author_word", 27], 28=>["author_word", 33], 36=>["author_word", 41], 42=>["author_word", 44], 45=>["author_word", 51], 52=>["year", 56]}
|
301
353
|
parse("Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001").should_not be_nil
|
302
354
|
sn = "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981"
|
303
355
|
parse(sn).should_not be_nil
|
304
|
-
value(sn).should == "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman
|
356
|
+
value(sn).should == "Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981"
|
305
357
|
pos(sn).should == {0=>["genus", 8], 9=>["species", 19], 20=>["infraspecific_type", 24], 25=>["infraspecies", 35], 37=>["author_word", 42], 44=>["author_word", 52], 55=>["author_word", 59], 60=>["author_word", 66], 68=>["author_word", 71], 72=>["author_word", 75], 76=>["author_word", 80], 83=>["author_word", 86], 87=>["year", 91]}
|
306
358
|
parse("Physalospora rubiginosa (Fr.) anon.").should_not be_nil
|
307
359
|
parse("Pleurotus ëous (Berk.) Sacc. 1887").should_not be_nil
|
@@ -363,21 +415,21 @@ describe ScientificNameClean do
|
|
363
415
|
it "should parse name with forma/fo./form./f." do
|
364
416
|
sn = "Caulerpa cupressoides forma nuda"
|
365
417
|
parse(sn).should_not be_nil
|
366
|
-
value(sn).should == "Caulerpa cupressoides
|
418
|
+
value(sn).should == "Caulerpa cupressoides forma nuda"
|
367
419
|
canonical(sn).should == "Caulerpa cupressoides nuda"
|
368
|
-
details(sn).should == [{:genus=>{:string=>"Caulerpa"}, :species=>{:string=>"cupressoides"}, :infraspecies=>[{:string=>"nuda", :rank=>"
|
420
|
+
details(sn).should == [{:genus=>{:string=>"Caulerpa"}, :species=>{:string=>"cupressoides"}, :infraspecies=>[{:string=>"nuda", :rank=>"forma"}]}]
|
369
421
|
pos(sn).should == {0=>["genus", 8], 9=>["species", 21], 22=>["infraspecific_type", 27], 28=>["infraspecies", 32]}
|
370
422
|
sn = "Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó"
|
371
423
|
parse(sn).should_not be_nil
|
372
|
-
value("Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó").should == "Chlorocyperus glaber
|
424
|
+
value("Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó").should == "Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó"
|
373
425
|
canonical(sn).should == "Chlorocyperus glaber fasciculariforme"
|
374
|
-
details(sn).should == [{:genus=>{:string=>"Chlorocyperus"}, :species=>{:string=>"glaber"}, :infraspecies=>[{:string=>"fasciculariforme", :rank=>"
|
426
|
+
details(sn).should == [{:genus=>{:string=>"Chlorocyperus"}, :species=>{:string=>"glaber"}, :infraspecies=>[{:string=>"fasciculariforme", :rank=>"form.", :authorship=>"(Lojac.) Soó", :combinationAuthorTeam=>{:authorTeam=>"Soó", :author=>["Soó"]}, :basionymAuthorTeam=>{:authorTeam=>"Lojac.", :author=>["Lojac."]}}]}]
|
375
427
|
pos(sn).should == {0=>["genus", 13], 14=>["species", 20], 21=>["infraspecific_type", 26], 27=>["infraspecies", 43], 45=>["author_word", 51], 53=>["author_word", 56]}
|
376
428
|
sn = "Bambusa nana Roxb. fo. alphonse-karri (Mitford ex Satow) Makino ex Shiros."
|
377
429
|
parse(sn).should_not be_nil
|
378
|
-
value(sn).should == "Bambusa nana Roxb.
|
430
|
+
value(sn).should == "Bambusa nana Roxb. fo. alphonse-karri (Mitford ex Satow) Makino ex Shiros."
|
379
431
|
canonical(sn).should == "Bambusa nana alphonse-karri"
|
380
|
-
details(sn).should == [{:genus=>{:string=>"Bambusa"}, :species=>{:string=>"nana", :authorship=>"Roxb.", :basionymAuthorTeam=>{:authorTeam=>"Roxb.", :author=>["Roxb."]}}, :infraspecies=>[{:string=>"alphonse-karri", :rank=>"
|
432
|
+
details(sn).should == [{:genus=>{:string=>"Bambusa"}, :species=>{:string=>"nana", :authorship=>"Roxb.", :basionymAuthorTeam=>{:authorTeam=>"Roxb.", :author=>["Roxb."]}}, :infraspecies=>[{:string=>"alphonse-karri", :rank=>"fo.", :authorship=>"(Mitford ex Satow) Makino ex Shiros.", :combinationAuthorTeam=>{:authorTeam=>"Makino", :author=>["Makino"], :exAuthorTeam=>{:authorTeam=>"Shiros.", :author=>["Shiros."]}}, :basionymAuthorTeam=>{:authorTeam=>"Mitford", :author=>["Mitford"], :exAuthorTeam=>{:authorTeam=>"Satow", :author=>["Satow"]}}}]}]
|
381
433
|
pos(sn).should == {0=>["genus", 7], 8=>["species", 12], 13=>["author_word", 18], 19=>["infraspecific_type", 22], 23=>["infraspecies", 37], 39=>["author_word", 46], 50=>["author_word", 55], 57=>["author_word", 63], 67=>["author_word", 74]}
|
382
434
|
sn = " Sphaerotheca fuliginea f. dahliae Movss. 1967 "
|
383
435
|
sn = "Sphaerotheca fuliginea f. dahliae Movss. 1967"
|
@@ -392,7 +444,7 @@ describe ScientificNameClean do
|
|
392
444
|
it "should parse name with several subspecies names NOT BOTANICAL CODE BUT NOT INFREQUENT" do
|
393
445
|
sn = "Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972"
|
394
446
|
parse(sn).should_not be_nil
|
395
|
-
value(sn).should == "Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall
|
447
|
+
value(sn).should == "Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972"
|
396
448
|
details(sn).should == [{:genus=>{:string=>"Hydnellum"}, :species=>{:string=>"scrobiculatum"}, :infraspecies=>[{:string=>"zonatum", :rank=>"var."}, {:string=>"parvum", :rank=>"f.", :authorship=>"(Banker) D. Hall & D.E. Stuntz 1972", :combinationAuthorTeam=>{:authorTeam=>"D. Hall & D.E. Stuntz", :author=>["D. Hall", "D.E. Stuntz"], :year=>"1972"}, :basionymAuthorTeam=>{:authorTeam=>"Banker", :author=>["Banker"]}}]}]
|
397
449
|
pos(sn).should == {0=>["genus", 9], 10=>["species", 23], 24=>["infraspecific_type", 28], 29=>["infraspecies", 36], 37=>["infraspecific_type", 39], 40=>["infraspecies", 46], 48=>["author_word", 54], 56=>["author_word", 58], 59=>["author_word", 63], 66=>["author_word", 70], 71=>["author_word", 77], 78=>["year", 82]}
|
398
450
|
parse('Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek').should_not be_nil
|
@@ -539,8 +591,6 @@ describe ScientificNameClean do
|
|
539
591
|
parse('Dipoena yoshidai Ono, in Ono et al., 1991').should_not be_nil
|
540
592
|
sn = 'Latrodectus mactans bishopi Kaston, 1938'
|
541
593
|
details(sn).should == [{:genus=>{:string=>"Latrodectus"}, :species=>{:string=>"mactans"}, :infraspecies=>[{:string=>"bishopi", :rank=>"n/a", :authorship=>"Kaston, 1938", :basionymAuthorTeam=>{:authorTeam=>"Kaston", :author=>["Kaston"], :year=>"1938"}}]}]
|
542
|
-
sn = 'Diplocephalus aff. procerus Thaler, 1972'
|
543
|
-
details(sn).should == [{:genus=>{:string=>"Diplocephalus"}, :species=>{:string=>"procerus", :authorship=>"Thaler, 1972", :basionymAuthorTeam=>{:authorTeam=>"Thaler", :author=>["Thaler"], :year=>"1972"}}}]
|
544
594
|
sn = 'Thiobacillus x Parker and Prisk 1953' #have to figure out black lists for this one
|
545
595
|
sn = 'Bacille de Plaut, Kritchevsky and Séguin 1921'
|
546
596
|
details(sn).should == [{:uninomial=>{:string=>"Bacille", :authorship=>"de Plaut, Kritchevsky and Séguin 1921", :basionymAuthorTeam=>{:authorTeam=>"de Plaut, Kritchevsky and Séguin", :author=>["de Plaut", "Kritchevsky", "Séguin"], :year=>"1921"}}}]
|
@@ -555,7 +605,9 @@ describe ScientificNameClean do
|
|
555
605
|
sn = 'Flexibacter elegans Soriano 1945, non Lewin 1969'
|
556
606
|
details(sn).should == [{:genus=>{:string=>"Flexibacter"}, :species=>{:string=>"elegans", :authorship=>"Soriano 1945, non Lewin 1969", :basionymAuthorTeam=>{:authorTeam=>"Soriano", :author=>["Soriano"], :year=>"1945"}}}]
|
557
607
|
sn = 'Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg'
|
558
|
-
details(sn).should == [{:genus=>{:string=>"Schottera"}, :species=>{:string=>"
|
608
|
+
details(sn).should == [{:genus=>{:string=>"Schottera"}, :species=>{:string=>"nicaeensis", :authorship=>"(J.V. Lamouroux ex Duby) Guiry & Hollenberg", :combinationAuthorTeam=>{:authorTeam=>"Guiry & Hollenberg", :author=>["Guiry", "Hollenberg"]}, :basionymAuthorTeam=>{:authorTeam=>"J.V. Lamouroux", :author=>["J.V. Lamouroux"], :exAuthorTeam=>{:authorTeam=>"Duby", :author=>["Duby"]}}}}]
|
609
|
+
sn = 'Deschampsia cespitosa ssp pumila'
|
610
|
+
details(sn).should == [{:genus=>{:string=>"Deschampsia"}, :species=>{:string=>"cespitosa"}, :infraspecies=>[{:string=>"pumila", :rank=>"ssp"}]}]
|
559
611
|
end
|
560
612
|
|
561
613
|
# Combination genus names should be merged without dash or capital letter
|
@@ -45,8 +45,8 @@ describe ScientificNameDirty do
|
|
45
45
|
it 'should parse year with page number' do
|
46
46
|
sn = "Gymnodactylus irregularis WERMUTH 1965: 54"
|
47
47
|
parse(sn).should_not be_nil
|
48
|
-
value(sn).should == "Gymnodactylus irregularis
|
49
|
-
details(sn).should == [{:genus=>{:string=>"Gymnodactylus"}, :species=>{:string=>"irregularis", :authorship=>"WERMUTH 1965: 54", :basionymAuthorTeam=>{:authorTeam=>"WERMUTH", :author=>["
|
48
|
+
value(sn).should == "Gymnodactylus irregularis Wermuth 1965"
|
49
|
+
details(sn).should == [{:genus=>{:string=>"Gymnodactylus"}, :species=>{:string=>"irregularis", :authorship=>"WERMUTH 1965: 54", :basionymAuthorTeam=>{:authorTeam=>"WERMUTH", :author=>["Wermuth"], :year=>"1965"}}}]
|
50
50
|
pos(sn).should == {0=>["genus", 13], 14=>["species", 25], 26=>["author_word", 33], 34=>["year", 38]}
|
51
51
|
end
|
52
52
|
|
@@ -74,10 +74,6 @@ describe ScientificNameDirty do
|
|
74
74
|
sn = 'Zoropsis (TaKeoa) nishimurai Yaginuma, 1971' #skipping for now
|
75
75
|
sn = 'Campylobacter pyloridis Marshall et al.1985.'
|
76
76
|
details(sn).should == [{:genus=>{:string=>"Campylobacter"}, :species=>{:string=>"pyloridis", :authorship=>"Marshall et al.1985.", :basionymAuthorTeam=>{:authorTeam=>"Marshall et al.", :author=>["Marshall et al."], :year=>"1985"}}}]
|
77
|
-
sn = 'Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).'
|
78
|
-
details(sn).should == [{:genus=>{:string=>"Staphylococcus"}, :species=>{:string=>"hyicus"}, :infraspecies=>[{:string=>"chromogenes", :rank=>"n/a", :authorship=>"Devriese et al. 1978", :basionymAuthorTeam=>{:authorTeam=>"Devriese et al.", :author=>["Devriese et al."], :year=>"1978"}}]}]
|
79
|
-
sn = 'Kitasatospora corrig. griseola Takahashi et al. 1985.'
|
80
|
-
details(sn).should == [{:genus=>{:string=>"Kitasatospora"}, :species=>{:string=>"griseola", :authorship=>"Takahashi et al. 1985.", :basionymAuthorTeam=>{:authorTeam=>"Takahashi et al.", :author=>["Takahashi et al."], :year=>"1985"}}}]
|
81
77
|
sn = 'Beijerinckia derxii venezuelae corrig. Thompson and Skerman, 1981'
|
82
78
|
details(sn).should == [{:genus=>{:string=>"Beijerinckia"}, :species=>{:string=>"derxii"}, :infraspecies=>[{:string=>"venezuelae", :rank=>"n/a", :authorship=>"Thompson and Skerman, 1981", :basionymAuthorTeam=>{:authorTeam=>"Thompson and Skerman", :author=>["Thompson", "Skerman"], :year=>"1981"}}]}]
|
83
79
|
details('Streptomyces parvisporogenes ignotus 1960').should == [{:genus=>{:string=>"Streptomyces"}, :species=>{:string=>"parvisporogenes"}, :infraspecies=>[{:string=>"ignotus", :rank=>"n/a", :year=>"1960"}]}]
|
@@ -96,6 +92,8 @@ describe ScientificNameDirty do
|
|
96
92
|
names = ["Rühlella","Sténométope laevissimus Bibron 1855", "Döringina Ihering 1929"].each do |name|
|
97
93
|
parse(name).should_not be_nil
|
98
94
|
end
|
95
|
+
details("Hirsutëlla mâle").should == [{:genus=>{:string=>"Hirsutella"}, :species=>{:string=>"male"}}]
|
96
|
+
details("Triticum repens vulgäre").should == [{:genus=>{:string=>"Triticum"}, :species=>{:string=>"repens"}, :infraspecies=>[{:string=>"vulgare", :rank=>"n/a"}]}]
|
99
97
|
end
|
100
98
|
|
101
99
|
# AsterophUa japonica
|
data/spec/parser/test_data.txt
CHANGED
@@ -9,7 +9,7 @@ Pseudocercospora|{"scientificName":{"parsed":true, "parser_version":"test_versio
|
|
9
9
|
|
10
10
|
#uninomial with author
|
11
11
|
Pseudocercospora Speg.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora Speg.","normalized":"Pseudocercospora Speg.","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"string":"Pseudocercospora","authorship":"Speg.","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."]}}}],"positions":{"0":["uninomial",16],"17":["author_word",22]}}}
|
12
|
-
Döringina Ihering 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Döringina Ihering 1929", "normalized":"Doringina Ihering 1929", "canonical":"Doringina", "hybrid":false, "details":[{"uninomial":{"string":"Doringina", "authorship":"Ihering 1929", "basionymAuthorTeam":{"authorTeam":"Ihering", "author":["Ihering"], "year":"1929"}}}], "parser_run":2, "positions":{"0":["uninomial", 9], "10":["author_word", 17], "18":["year", 22]}}}
|
12
|
+
Döringina Ihering 1929 (synonym)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Döringina Ihering 1929 (synonym)", "normalized":"Doringina Ihering 1929", "canonical":"Doringina", "hybrid":false, "details":[{"uninomial":{"string":"Doringina", "authorship":"Ihering 1929", "basionymAuthorTeam":{"authorTeam":"Ihering", "author":["Ihering"], "year":"1929"}}}], "parser_run":2, "positions":{"0":["uninomial", 9], "10":["author_word", 17], "18":["year", 22]}}}
|
13
13
|
|
14
14
|
#uninomial with author and year
|
15
15
|
Pseudocercospora Speg. 1910|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora Speg. 1910","normalized":"Pseudocercospora Speg. 1910","canonical":"Pseudocercospora","hybrid":false,"details":[{"uninomial":{"string":"Pseudocercospora","authorship":"Speg. 1910","basionymAuthorTeam":{"authorTeam":"Speg.","author":["Speg."],"year":"1910"}}}],"positions":{"0":["uninomial",16],"17":["author_word",22],"23":["year",27]}}}
|
@@ -33,33 +33,59 @@ Ty Bory de St. Vincent 1827|{"scientificName":{"parsed":true, "parser_version":"
|
|
33
33
|
Ua Girault 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ua Girault 1929","normalized":"Ua Girault 1929","canonical":"Ua","hybrid":false,"details":[{"uninomial":{"string":"Ua","authorship":"Girault 1929","basionymAuthorTeam":{"authorTeam":"Girault","author":["Girault"],"year":"1929"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"11":["year",15]}}}
|
34
34
|
Aa Baker 1940|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Aa Baker 1940","normalized":"Aa Baker 1940","canonical":"Aa","hybrid":false,"details":[{"uninomial":{"string":"Aa","authorship":"Baker 1940","basionymAuthorTeam":{"authorTeam":"Baker","author":["Baker"],"year":"1940"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
35
35
|
Ja Uéno 1955|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ja U\u00e9no 1955","normalized":"Ja U\u00e9no 1955","canonical":"Ja","hybrid":false,"details":[{"uninomial":{"string":"Ja","authorship":"U\u00e9no 1955","basionymAuthorTeam":{"authorTeam":"U\u00e9no","author":["U\u00e9no"],"year":"1955"}}}],"positions":{"0":["uninomial",2],"3":["author_word",7],"8":["year",12]}}}
|
36
|
-
Zu Walters & Fitch 1960|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zu Walters & Fitch 1960","normalized":"Zu Walters
|
36
|
+
Zu Walters & Fitch 1960|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zu Walters & Fitch 1960","normalized":"Zu Walters & Fitch 1960","canonical":"Zu","hybrid":false,"details":[{"uninomial":{"string":"Zu","authorship":"Walters & Fitch 1960","basionymAuthorTeam":{"authorTeam":"Walters & Fitch","author":["Walters","Fitch"],"year":"1960"}}}],"positions":{"0":["uninomial",2],"3":["author_word",10],"13":["author_word",18],"19":["year",23]}}}
|
37
37
|
La Bleszynski 1966|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"La Bleszynski 1966","normalized":"La Bleszynski 1966","canonical":"La","hybrid":false,"details":[{"uninomial":{"string":"La","authorship":"Bleszynski 1966","basionymAuthorTeam":{"authorTeam":"Bleszynski","author":["Bleszynski"],"year":"1966"}}}],"positions":{"0":["uninomial",2],"3":["author_word",13],"14":["year",18]}}}
|
38
38
|
Qu Durkoop|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Qu Durkoop","normalized":"Qu Durkoop","canonical":"Qu","hybrid":false,"details":[{"uninomial":{"string":"Qu","authorship":"Durkoop","basionymAuthorTeam":{"authorTeam":"Durkoop","author":["Durkoop"]}}}],"positions":{"0":["uninomial",2],"3":["author_word",10]}}}
|
39
39
|
As Slipinski 1982|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"As Slipinski 1982","normalized":"As Slipinski 1982","canonical":"As","hybrid":false,"details":[{"uninomial":{"string":"As","authorship":"Slipinski 1982","basionymAuthorTeam":{"authorTeam":"Slipinski","author":["Slipinski"],"year":"1982"}}}],"positions":{"0":["uninomial",2],"3":["author_word",12],"13":["year",17]}}}
|
40
40
|
Ba Solem 1983|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Ba Solem 1983","normalized":"Ba Solem 1983","canonical":"Ba","hybrid":false,"details":[{"uninomial":{"string":"Ba","authorship":"Solem 1983","basionymAuthorTeam":{"authorTeam":"Solem","author":["Solem"],"year":"1983"}}}],"positions":{"0":["uninomial",2],"3":["author_word",8],"9":["year",13]}}}
|
41
41
|
|
42
|
+
#multi-uninomials
|
43
|
+
Poaceae subtrib. Scolochloinae Soreng|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae subtrib. Scolochloinae Soreng", "normalized":"Poaceae subtrib. Scolochloinae Soreng", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"subtrib.", "uninomial2":{"string":"Scolochloinae", "authorship":"Soreng", "basionymAuthorTeam":{"authorTeam":"Soreng", "author":["Soreng"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 16], "17":["uninomial", 37]}}}
|
44
|
+
Zygophyllaceae subfam. Tribuloideae D.M.Porter|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zygophyllaceae subfam. Tribuloideae D.M.Porter", "normalized":"Zygophyllaceae subfam. Tribuloideae D.M.Porter", "canonical":"Zygophyllaceae", "hybrid":false, "details":[{"uninomial":{"string":"Zygophyllaceae"}, "rank_uninomials":"subfam.", "uninomial2":{"string":"Tribuloideae", "authorship":"D.M.Porter", "basionymAuthorTeam":{"authorTeam":"D.M.Porter", "author":["D.M.Porter"]}}}], "parser_run":1, "positions":{"0":["uninomial", 14], "15":["rank_uninomial", 22], "23":["uninomial", 46]}}}
|
45
|
+
Cordia (Adans.) Kuntze sect. Salimori|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cordia (Adans.) Kuntze sect. Salimori", "normalized":"Cordia (Adans.) Kuntze sect. Salimori", "canonical":"Cordia", "hybrid":false, "details":[{"uninomial":{"string":"Cordia", "authorship":"(Adans.) Kuntze", "combinationAuthorTeam":{"authorTeam":"Kuntze", "author":["Kuntze"]}, "basionymAuthorTeam":{"authorTeam":"Adans.", "author":["Adans."]}}, "rank_uninomials":"sect.", "uninomial2":{"string":"Salimori"}}], "parser_run":1, "positions":{"0":["uninomial", 6], "8":["author_word", 14], "16":["author_word", 22], "23":["rank_uninomial", 28], "29":["uninomial", 37]}}}
|
46
|
+
Poaceae supertrib. Arundinarodae L.Liu|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poaceae supertrib. Arundinarodae L.Liu", "normalized":"Poaceae supertrib. Arundinarodae L.Liu", "canonical":"Poaceae", "hybrid":false, "details":[{"uninomial":{"string":"Poaceae"}, "rank_uninomials":"supertrib.", "uninomial2":{"string":"Arundinarodae", "authorship":"L.Liu", "basionymAuthorTeam":{"authorTeam":"L.Liu", "author":["L.Liu"]}}}], "parser_run":1, "positions":{"0":["uninomial", 7], "8":["rank_uninomial", 18], "19":["uninomial", 38]}}}
|
47
|
+
Alchemilla subsect. Sericeae A.Plocek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alchemilla subsect. Sericeae A.Plocek", "normalized":"Alchemilla subsect. Sericeae A.Plocek", "canonical":"Alchemilla", "hybrid":false, "details":[{"uninomial":{"string":"Alchemilla"}, "rank_uninomials":"subsect.", "uninomial2":{"string":"Sericeae", "authorship":"A.Plocek", "basionymAuthorTeam":{"authorTeam":"A.Plocek", "author":["A.Plocek"]}}}], "parser_run":1, "positions":{"0":["uninomial", 10], "11":["rank_uninomial", 19], "20":["uninomial", 37]}}}
|
48
|
+
#NOTE incorrectly determined infragenus. Ambiguous placement which fits either author or infragenus.
|
49
|
+
Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon", "normalized":"Hymenophyllum subgen. Hymenoglossum (Presl) R.M.Tryon & A.Tryon", "canonical":"Hymenophyllum", "hybrid":false, "details":[{"uninomial":{"string":"Hymenophyllum"}, "rank_uninomials":"subgen.", "uninomial2":{"string":"Hymenoglossum", "infragenus":{"string":"Presl"}, "authorship":"R.M.Tryon & A.Tryon", "basionymAuthorTeam":{"authorTeam":"R.M.Tryon & A.Tryon", "author":["R.M.Tryon", "A.Tryon"]}}}], "parser_run":1, "positions":{"0":["uninomial", 13], "14":["rank_uninomial", 21], "22":["uninomial", 63]}}}
|
50
|
+
Aconitum ser. Tangutica W.T. Wang|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aconitum ser. Tangutica W.T. Wang", "normalized":"Aconitum ser. Tangutica W.T. Wang", "canonical":"Aconitum", "hybrid":false, "details":[{"uninomial":{"string":"Aconitum"}, "rank_uninomials":"ser.", "uninomial2":{"string":"Tangutica", "authorship":"W.T. Wang", "basionymAuthorTeam":{"authorTeam":"W.T. Wang", "author":["W.T. Wang"]}}}], "parser_run":1, "positions":{"0":["uninomial", 8], "9":["rank_uninomial", 13], "14":["uninomial", 33]}}}
|
51
|
+
|
42
52
|
#canonical binomial
|
43
53
|
Pseudocercospora dendrobii|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii","normalized":"Pseudocercospora dendrobii","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii"}}],"positions":{"0":["genus",16],"21":["species",30]}}}
|
54
|
+
Cucurbita pepo|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cucurbita pepo", "normalized":"Cucurbita pepo", "canonical":"Cucurbita pepo", "hybrid":false, "details":[{"genus":{"string":"Cucurbita"}, "species":{"string":"pepo"}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14]}}}
|
44
55
|
|
45
56
|
#binomial with author and a year
|
46
57
|
Platypus bicaudatulus Schedl 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl 1935","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl 1935","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"29":["year",33]}}}
|
47
58
|
Platypus bicaudatulus Schedl, 1935h|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Platypus bicaudatulus Schedl, 1935h","normalized":"Platypus bicaudatulus Schedl 1935","canonical":"Platypus bicaudatulus","hybrid":false,"details":[{"genus":{"string":"Platypus"},"species":{"string":"bicaudatulus","authorship":"Schedl, 1935h","basionymAuthorTeam":{"authorTeam":"Schedl","author":["Schedl"],"year":"1935"}}}],"positions":{"0":["genus",8],"9":["species",21],"22":["author_word",28],"30":["year",35]}}}
|
48
59
|
|
60
|
+
#binomial with abbreviated genus
|
61
|
+
M. alpium|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"M. alpium", "normalized":"M. alpium", "canonical":"M. alpium", "hybrid":false, "details":[{"genus":{"string":"M."}, "species":{"string":"alpium"}}], "parser_run":1, "positions":{"0":["genus", 3], "3":["species", 9]}}}
|
62
|
+
Mo. alpium (Osbeck, 1778)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mo. alpium (Osbeck, 1778)", "normalized":"Mo. alpium (Osbeck 1778)", "canonical":"Mo. alpium", "hybrid":false, "details":[{"genus":{"string":"Mo."}, "species":{"string":"alpium", "authorship":"(Osbeck, 1778)", "basionymAuthorTeam":{"authorTeam":"Osbeck", "author":["Osbeck"], "year":"1778"}}}], "parser_run":1, "positions":{"0":["genus", 4], "4":["species", 10], "12":["author_word", 18], "20":["year", 24]}}}
|
63
|
+
Mom.alpium (Osbeck, 1778)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mom.alpium (Osbeck, 1778)", "normalized":"Mom. alpium (Osbeck 1778)", "canonical":"Mom. alpium", "hybrid":false, "details":[{"genus":{"string":"Mom."}, "species":{"string":"alpium", "authorship":"(Osbeck, 1778)", "basionymAuthorTeam":{"authorTeam":"Osbeck", "author":["Osbeck"], "year":"1778"}}}], "parser_run":1, "positions":{"0":["genus", 4], "4":["species", 10], "12":["author_word", 18], "20":["year", 24]}}}
|
64
|
+
|
65
|
+
#binomial with apostrophe in species epithet
|
66
|
+
Junellia o'donelli Moldenke, 1946|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Junellia o'donelli Moldenke, 1946", "normalized":"Junellia odonelli Moldenke 1946", "canonical":"Junellia odonelli", "hybrid":false, "details":[{"genus":{"string":"Junellia"}, "species":{"string":"odonelli", "authorship":"Moldenke, 1946", "basionymAuthorTeam":{"authorTeam":"Moldenke", "author":["Moldenke"], "year":"1946"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["author_word", 27], "29":["year", 33]}}}
|
67
|
+
|
49
68
|
# whitespace names (rare, only ~50 cases)
|
50
69
|
#TODO Donatia novae zelandiae Hook.f.
|
51
70
|
#TODO Donatia novae-zelandiae Hook.f.
|
52
71
|
|
53
72
|
#binomial with several authours
|
54
|
-
|
55
|
-
Pseudocercospora dendrobii
|
56
|
-
Pseudocercospora dendrobii
|
57
|
-
|
73
|
+
Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien", "normalized":"Potamogeton iilinoensis var. ventanicola (Hicken) Horn af Rantzien", "canonical":"Potamogeton iilinoensis ventanicola", "hybrid":false, "details":[{"genus":{"string":"Potamogeton"}, "species":{"string":"iilinoensis"}, "infraspecies":[{"string":"ventanicola", "rank":"var.", "authorship":"(Hicken) Horn af Rantzien", "combinationAuthorTeam":{"authorTeam":"Horn af Rantzien", "author":["Horn af Rantzien"]}, "basionymAuthorTeam":{"authorTeam":"Hicken", "author":["Hicken"]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 40], "42":["author_word", 48], "50":["author_word", 54], "55":["author_word", 57], "58":["author_word", 66]}}}
|
74
|
+
Pseudocercospora dendrobii Goh & W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh & W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh & W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "33":["author_word", 37], "38":["author_word", 43], "44":["year", 48]}}}
|
75
|
+
Pseudocercospora dendrobii Goh and W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh and W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh and W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh and W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "35":["author_word", 39], "40":["author_word", 45], "46":["year", 50]}}}
|
76
|
+
Pseudocercospora dendrobii Goh et W.H. Hsieh 1990|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pseudocercospora dendrobii Goh et W.H. Hsieh 1990", "normalized":"Pseudocercospora dendrobii Goh & W.H. Hsieh 1990", "canonical":"Pseudocercospora dendrobii", "hybrid":false, "details":[{"genus":{"string":"Pseudocercospora"}, "species":{"string":"dendrobii", "authorship":"Goh et W.H. Hsieh 1990", "basionymAuthorTeam":{"authorTeam":"Goh et W.H. Hsieh", "author":["Goh", "W.H. Hsieh"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 16], "17":["species", 26], "27":["author_word", 30], "34":["author_word", 38], "39":["author_word", 44], "45":["year", 49]}}}
|
77
|
+
Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Schottera nicaeënsis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "normalized":"Schottera nicaeensis (J.V. Lamouroux ex Duby) Guiry & Hollenberg", "canonical":"Schottera nicaeensis", "hybrid":false, "details":[{"genus":{"string":"Schottera"}, "species":{"string":"nicaeensis", "authorship":"(J.V. Lamouroux ex Duby) Guiry & Hollenberg", "combinationAuthorTeam":{"authorTeam":"Guiry & Hollenberg", "author":["Guiry", "Hollenberg"]}, "basionymAuthorTeam":{"authorTeam":"J.V. Lamouroux", "author":["J.V. Lamouroux"], "exAuthorTeam":{"authorTeam":"Duby", "author":["Duby"]}}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 20], "22":["author_word", 26], "27":["author_word", 36], "40":["author_word", 44], "46":["author_word", 51], "54":["author_word", 64]}}}
|
78
|
+
Hirsutëlla mâle|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hirsutëlla mâle", "normalized":"Hirsutella male", "canonical":"Hirsutella male", "hybrid":false, "details":[{"genus":{"string":"Hirsutella"}, "species":{"string":"male"}}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 15]}}}
|
79
|
+
Triticum repens vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens vulgäre", "normalized":"Triticum repens vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecies", 23]}}}
|
80
|
+
Triticum repens var. vulgäre|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Triticum repens var. vulgäre", "normalized":"Triticum repens var. vulgare", "canonical":"Triticum repens vulgare", "hybrid":false, "details":[{"genus":{"string":"Triticum"}, "species":{"string":"repens"}, "infraspecies":[{"string":"vulgare", "rank":"var."}]}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 15], "16":["infraspecific_type", 20], "21":["infraspecies", 28]}}}
|
81
|
+
Aëtosaurus ferratus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aëtosaurus ferratus", "normalized":"Aetosaurus ferratus", "canonical":"Aetosaurus ferratus", "hybrid":false, "details":[{"genus":{"string":"Aetosaurus"}, "species":{"string":"ferratus"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 19]}}}
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58
82
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59
83
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#binomial with several authors and a year
|
60
|
-
Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun
|
84
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+
Pseudocercospora dendrobii U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"U. Braun & Crous 2003","basionymAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",29],"30":["author_word",35],"38":["author_word",43],"44":["year",48]}}}
|
85
|
+
Torymus bangalorensis (Mani & Kurian, 1953)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Torymus bangalorensis (Mani & Kurian, 1953)", "normalized":"Torymus bangalorensis (Mani & Kurian 1953)", "canonical":"Torymus bangalorensis", "hybrid":false, "details":[{"genus":{"string":"Torymus"}, "species":{"string":"bangalorensis", "authorship":"(Mani & Kurian, 1953)", "basionymAuthorTeam":{"authorTeam":"Mani & Kurian", "author":["Mani", "Kurian"], "year":"1953"}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 21], "23":["author_word", 27], "34":["author_word", 40], "42":["year", 46]}}}
|
61
86
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62
87
|
#iczn: species name with infragenus
|
88
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+
Hegeter (Hegeter) tenuipunctatus Brullé, 1838|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hegeter (Hegeter) tenuipunctatus Brullé, 1838", "normalized":"Hegeter (Hegeter) tenuipunctatus Brullé 1838", "canonical":"Hegeter tenuipunctatus", "hybrid":false, "details":[{"genus":{"string":"Hegeter"}, "infragenus":{"string":"Hegeter"}, "species":{"string":"tenuipunctatus", "authorship":"Brullé, 1838", "basionymAuthorTeam":{"authorTeam":"Brullé", "author":["Brullé"], "year":"1838"}}}], "parser_run":1, "positions":{"0":["genus", 7], "9":["infragenus", 16], "18":["species", 32], "33":["author_word", 39], "41":["year", 45]}}}
|
63
89
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Hegeter (Hegeter) intercedens Lindberg H 1950|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hegeter (Hegeter) intercedens Lindberg H 1950","normalized":"Hegeter (Hegeter) intercedens Lindberg H 1950","canonical":"Hegeter intercedens","hybrid":false,"details":[{"genus":{"string":"Hegeter"},"infragenus":{"string":"Hegeter"},"species":{"string":"intercedens","authorship":"Lindberg H 1950","basionymAuthorTeam":{"authorTeam":"Lindberg H","author":["Lindberg H"],"year":"1950"}}}],"positions":{"0":["genus",7],"9":["infragenus",16],"18":["species",29],"30":["author_word",38],"39":["author_word",40],"41":["year",45]}}}
|
64
90
|
Brachytrypus (B.) grandidieri|{"scientificName":{"parsed":true, "verbatim":"Brachytrypus (B.) grandidieri", "normalized":"Brachytrypus (B.) grandidieri", "canonical":"Brachytrypus grandidieri", "hybrid":false, "details":[{"genus":{"string":"Brachytrypus"}, "infragenus":{"string":"B."}, "species":{"string":"grandidieri"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 12], "14":["infragenus", 16], "18":["species", 29]}}}
|
65
91
|
Cyprideis (Cyprideis) thessalonike amasyaensis|{"scientificName":{"parsed":true, "verbatim":"Cyprideis (Cyprideis) thessalonike amasyaensis", "normalized":"Cyprideis (Cyprideis) thessalonike amasyaensis", "canonical":"Cyprideis thessalonike amasyaensis", "hybrid":false, "details":[{"genus":{"string":"Cyprideis"}, "infragenus":{"string":"Cyprideis"}, "species":{"string":"thessalonike"}, "infraspecies":[{"string":"amasyaensis", "rank":"n/a"}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 9], "11":["infragenus", 20], "22":["species", 34], "35":["infraspecies", 46]}}}
|
@@ -71,9 +97,12 @@ Ferganoconcha? oblonga|{"scientificName":{"parsed":true, "parser_version":"test_
|
|
71
97
|
Rühlella|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"R\u00fchlella","normalized":"Ruhlella","canonical":"Ruhlella","hybrid":false,"details":[{"uninomial":{"string":"Ruhlella"}}],"positions":{"0":["uninomial",8]}}}
|
72
98
|
Sténométope laevissimus Bibron 1855|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"St\u00e9nom\u00e9tope laevissimus Bibron 1855","normalized":"Stenometope laevissimus Bibron 1855","canonical":"Stenometope laevissimus","hybrid":false,"details":[{"genus":{"string":"Stenometope"},"species":{"string":"laevissimus","authorship":"Bibron 1855","basionymAuthorTeam":{"authorTeam":"Bibron","author":["Bibron"],"year":"1855"}}}],"positions":{"0":["genus",11],"12":["species",23],"24":["author_word",30],"31":["year",35]}}}
|
73
99
|
Choriozopella trägårdhi Lawrence, 1947|{"scientificName":{"parsed":true, "verbatim":"Choriozopella trägårdhi Lawrence, 1947", "normalized":"Choriozopella tragardhi Lawrence 1947", "canonical":"Choriozopella tragardhi", "hybrid":false, "details":[{"genus":{"string":"Choriozopella"}, "species":{"string":"tragardhi", "authorship":"Lawrence, 1947", "basionymAuthorTeam":{"authorTeam":"Lawrence", "author":["Lawrence"], "year":"1947"}}}], "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 13], "14":["species", 23], "24":["author_word", 32], "34":["year", 38]}}}
|
74
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-
Isoëtes asplundii H. P. Fuchs|{"scientificName":{"parsed":true, "verbatim":"Isoëtes asplundii H. P. Fuchs", "normalized":"
|
75
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-
Cerambyx thomæ GMELIN J. F., 1790|{"scientificName":{"parsed":true, "verbatim":"Cerambyx thomæ GMELIN J. F., 1790", "normalized":"Cerambyx thomae
|
100
|
+
Isoëtes asplundii H. P. Fuchs|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Isoëtes asplundii H. P. Fuchs", "normalized":"Isoetes asplundii H. P. Fuchs", "canonical":"Isoetes asplundii", "hybrid":false, "details":[{"genus":{"string":"Isoetes"}, "species":{"string":"asplundii", "authorship":"H. P. Fuchs", "basionymAuthorTeam":{"authorTeam":"H. P. Fuchs", "author":["H. P. Fuchs"]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "18":["author_word", 20], "21":["author_word", 23], "24":["author_word", 29]}}}
|
101
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+
Cerambyx thomæ GMELIN J. F., 1790|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cerambyx thomæ GMELIN J. F., 1790", "normalized":"Cerambyx thomae Gmelin J. F. 1790", "canonical":"Cerambyx thomae", "hybrid":false, "details":[{"genus":{"string":"Cerambyx"}, "species":{"string":"thomae", "authorship":"GMELIN J. F., 1790", "basionymAuthorTeam":{"authorTeam":"GMELIN J. F.", "author":["Gmelin J. F."], "year":"1790"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 14], "15":["author_word", 21], "22":["author_word", 24], "25":["author_word", 27], "29":["year", 33]}}}
|
102
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+
#Campethera cailliautii fülleborni|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
|
103
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+
|
76
104
|
#digraph unicode characters
|
105
|
+
Æschopalæa grisella Pascoe, 1864|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Æschopalæa grisella Pascoe, 1864", "normalized":"Aeschopalaea grisella Pascoe 1864", "canonical":"Aeschopalaea grisella", "hybrid":false, "details":[{"genus":{"string":"Aeschopalaea"}, "species":{"string":"grisella", "authorship":"Pascoe, 1864", "basionymAuthorTeam":{"authorTeam":"Pascoe", "author":["Pascoe"], "year":"1864"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 19], "20":["author_word", 26], "28":["year", 32]}}}
|
77
106
|
Læptura laetifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"L\u00e6ptura laetifica Dow, 1913","normalized":"Laeptura laetifica Dow 1913","canonical":"Laeptura laetifica","hybrid":false,"details":[{"genus":{"string":"Laeptura"},"species":{"string":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
|
78
107
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Leptura lætifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Leptura l\u00e6tifica Dow, 1913","normalized":"Leptura laetifica Dow 1913","canonical":"Leptura laetifica","hybrid":false,"details":[{"genus":{"string":"Leptura"},"species":{"string":"laetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",20],"22":["year",26]}}}
|
79
108
|
Leptura leætifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Leptura le\u00e6tifica Dow, 1913","normalized":"Leptura leaetifica Dow 1913","canonical":"Leptura leaetifica","hybrid":false,"details":[{"genus":{"string":"Leptura"},"species":{"string":"leaetifica","authorship":"Dow, 1913","basionymAuthorTeam":{"authorTeam":"Dow","author":["Dow"],"year":"1913"}}}],"positions":{"0":["genus",7],"8":["species",17],"18":["author_word",21],"23":["year",27]}}}
|
@@ -82,31 +111,41 @@ Leœptura laetifica Dow, 1913|{"scientificName":{"parsed":true, "parser_version"
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|
82
111
|
Ærenea cognata Lacordaire, 1872|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u00c6renea cognata Lacordaire, 1872","normalized":"Aerenea cognata Lacordaire 1872","canonical":"Aerenea cognata","hybrid":false,"details":[{"genus":{"string":"Aerenea"},"species":{"string":"cognata","authorship":"Lacordaire, 1872","basionymAuthorTeam":{"authorTeam":"Lacordaire","author":["Lacordaire"],"year":"1872"}}}],"positions":{"0":["genus",6],"7":["species",14],"15":["author_word",25],"27":["year",31]}}}
|
83
112
|
Œdicnemus capensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u0152dicnemus capensis","normalized":"Oedicnemus capensis","canonical":"Oedicnemus capensis","hybrid":false,"details":[{"genus":{"string":"Oedicnemus"},"species":{"string":"capensis"}}],"positions":{"0":["genus",9],"10":["species",18]}}}
|
84
113
|
Œnanthe œnanthe|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u0152nanthe \u0153nanthe","normalized":"Oenanthe oenanthe","canonical":"Oenanthe oenanthe","hybrid":false,"details":[{"genus":{"string":"Oenanthe"},"species":{"string":"oenanthe"}}],"positions":{"0":["genus",7],"8":["species",15]}}}
|
114
|
+
Hördeum vulgare cœrulescens|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hördeum vulgare cœrulescens", "normalized":"Hordeum vulgare coerulescens", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecies", 27]}}}
|
115
|
+
Hordeum vulgare cœrulescens Metzger|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hordeum vulgare cœrulescens Metzger", "normalized":"Hordeum vulgare coerulescens Metzger", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"n/a", "authorship":"Metzger", "basionymAuthorTeam":{"authorTeam":"Metzger", "author":["Metzger"]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecies", 27], "28":["author_word", 35]}}}
|
116
|
+
Hordeum vulgare f. cœrulescens|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hordeum vulgare f. cœrulescens", "normalized":"Hordeum vulgare f. coerulescens", "canonical":"Hordeum vulgare coerulescens", "hybrid":false, "details":[{"genus":{"string":"Hordeum"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"coerulescens", "rank":"f."}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["infraspecific_type", 18], "19":["infraspecies", 30]}}}
|
85
117
|
|
86
118
|
# old style s (ſ)
|
87
119
|
Musca domeſtica Linnaeus 1758 sec. Pemberton 1947|{"scientificName":{"parsed":true, "verbatim":"Musca domeſtica Linnaeus 1758 sec. Pemberton 1947", "normalized":"Musca domestica Linnaeus 1758", "canonical":"Musca domestica", "hybrid":false, "details":[{"genus":{"string":"Musca"}, "species":{"string":"domestica", "authorship":"Linnaeus 1758", "basionymAuthorTeam":{"authorTeam":"Linnaeus", "author":["Linnaeus"], "year":"1758"}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15], "16":["author_word", 24], "25":["year", 29]}}}
|
120
|
+
Amphisbæna fuliginoſa Linnaeus 1758|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amphisbæna fuliginoſa Linnaeus 1758", "normalized":"Amphisbaena fuliginosa Linnaeus 1758", "canonical":"Amphisbaena fuliginosa", "hybrid":false, "details":[{"genus":{"string":"Amphisbaena"}, "species":{"string":"fuliginosa", "authorship":"Linnaeus 1758", "basionymAuthorTeam":{"authorTeam":"Linnaeus", "author":["Linnaeus"], "year":"1758"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 30], "31":["year", 35]}}}
|
88
121
|
|
89
|
-
#basionym in parenthesis
|
122
|
+
#basionym author in parenthesis
|
90
123
|
Zophosis persis (Chatanay, 1914)|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay, 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay, 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"27":["year",31]}}}
|
91
124
|
Zophosis persis (Chatanay 1914)|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay 1914)","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay 1914)","basionymAuthorTeam":{"authorTeam":"Chatanay","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"26":["year",30]}}}
|
92
125
|
Zophosis persis (Chatanay), 1914|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Zophosis persis (Chatanay), 1914","normalized":"Zophosis persis (Chatanay 1914)","canonical":"Zophosis persis","hybrid":false,"details":[{"genus":{"string":"Zophosis"},"species":{"string":"persis","authorship":"(Chatanay), 1914","basionymAuthorTeam":{"author_team":"(Chatanay), 1914","author":["Chatanay"],"year":"1914"}}}],"positions":{"0":["genus",8],"9":["species",15],"17":["author_word",25],"28":["year",32]}}}
|
126
|
+
Zophosis quadrilineata (Oliv. )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zophosis quadrilineata (Oliv. )", "normalized":"Zophosis quadrilineata (Oliv.)", "canonical":"Zophosis quadrilineata", "hybrid":false, "details":[{"genus":{"string":"Zophosis"}, "species":{"string":"quadrilineata", "authorship":"(Oliv. )", "basionymAuthorTeam":{"authorTeam":"Oliv.", "author":["Oliv."]}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 22], "24":["author_word", 29]}}}
|
127
|
+
Zophosis quadrilineata (Olivier 1795)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Zophosis quadrilineata (Olivier 1795)", "normalized":"Zophosis quadrilineata (Olivier 1795)", "canonical":"Zophosis quadrilineata", "hybrid":false, "details":[{"genus":{"string":"Zophosis"}, "species":{"string":"quadrilineata", "authorship":"(Olivier 1795)", "basionymAuthorTeam":{"authorTeam":"Olivier", "author":["Olivier"], "year":"1795"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 22], "24":["author_word", 31], "32":["year", 36]}}}
|
93
128
|
|
94
129
|
#binomial with basionym and combination authors
|
95
|
-
Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett) U. Braun
|
96
|
-
Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun
|
97
|
-
Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun
|
130
|
+
Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett)U. Braun & Crous 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"]}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["author_word",46],"47":["author_word",52],"55":["author_word",60],"65":["year",69]}}}
|
131
|
+
Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett, 1873)U. Braun & Crous 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett, 1873)U. Braun & Crous 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"45":["year",49],"50":["author_word",52],"53":["author_word",58],"61":["author_word",66],"71":["year",75]}}}
|
132
|
+
Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Pseudocercospora dendrobii(H.C. Burnett 1873)U. Braun & Crous , 2003","normalized":"Pseudocercospora dendrobii (H.C. Burnett 1873) U. Braun & Crous 2003","canonical":"Pseudocercospora dendrobii","hybrid":false,"details":[{"genus":{"string":"Pseudocercospora"},"species":{"string":"dendrobii","authorship":"(H.C. Burnett 1873)U. Braun & Crous , 2003","combinationAuthorTeam":{"authorTeam":"U. Braun & Crous","author":["U. Braun","Crous"],"year":"2003"},"basionymAuthorTeam":{"authorTeam":"H.C. Burnett","author":["H.C. Burnett"],"year":"1873"}}}],"positions":{"0":["genus",16],"17":["species",26],"27":["author_word",31],"36":["author_word",43],"44":["year",48],"49":["author_word",51],"52":["author_word",57],"60":["author_word",65],"71":["year",75]}}}
|
133
|
+
Sedella pumila (Benth.) Britton & Rose|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sedella pumila (Benth.) Britton & Rose", "normalized":"Sedella pumila (Benth.) Britton & Rose", "canonical":"Sedella pumila", "hybrid":false, "details":[{"genus":{"string":"Sedella"}, "species":{"string":"pumila", "authorship":"(Benth.) Britton & Rose", "combinationAuthorTeam":{"authorTeam":"Britton & Rose", "author":["Britton", "Rose"]}, "basionymAuthorTeam":{"authorTeam":"Benth.", "author":["Benth."]}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 14], "16":["author_word", 22], "24":["author_word", 31], "34":["author_word", 38]}}}
|
98
134
|
|
99
135
|
#infraspecies without rank
|
100
|
-
Hydnellum scrobiculatum zonatum (
|
101
|
-
Hydnellum
|
136
|
+
Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "normalized":"Hydnellum scrobiculatum zonatum (Batsch) K. A. Harrison 1961", "canonical":"Hydnellum scrobiculatum zonatum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"n/a", "authorship":"(Batsch) K. A. Harrison 1961", "combinationAuthorTeam":{"authorTeam":"K. A. Harrison", "author":["K. A. Harrison"], "year":"1961"}, "basionymAuthorTeam":{"authorTeam":"Batsch", "author":["Batsch"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecies", 31], "33":["author_word", 39], "41":["author_word", 43], "44":["author_word", 46], "47":["author_word", 55], "56":["year", 60]}}}
|
137
|
+
Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31],"33":["author_word",39],"41":["author_word",43],"44":["author_word",48],"51":["author_word",55],"56":["author_word",62],"63":["year",67]}}}
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138
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+
Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","normalized":"Hydnellum (Hydnellum) scrobiculatum zonatum (Banker) D. Hall & D.E. Stuntz 1972","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"infragenus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a","authorship":"(Banker) D. Hall & D.E. Stuntz 1972","combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz","author":["D. Hall","D.E. Stuntz"],"year":"1972"},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}]}],"positions":{"0":["genus",9],"11":["infragenus",20],"22":["species",35],"36":["infraspecies",43],"45":["author_word",51],"53":["author_word",55],"56":["author_word",60],"63":["author_word",67],"68":["author_word",74],"75":["year",79]}}}
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Hydnellum scrobiculatum zonatum|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Hydnellum scrobiculatum zonatum","normalized":"Hydnellum scrobiculatum zonatum","canonical":"Hydnellum scrobiculatum zonatum","hybrid":false,"details":[{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"},"infraspecies":[{"string":"zonatum","rank":"n\/a"}]}],"positions":{"0":["genus",9],"10":["species",23],"24":["infraspecies",31]}}}
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140
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+
Mus musculus hortulanus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Mus musculus hortulanus", "normalized":"Mus musculus hortulanus", "canonical":"Mus musculus hortulanus", "hybrid":false, "details":[{"genus":{"string":"Mus"}, "species":{"string":"musculus"}, "infraspecies":[{"string":"hortulanus", "rank":"n/a"}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 12], "13":["infraspecies", 23]}}}
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141
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+
Ortygospiza atricollis mülleri|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Ortygospiza atricollis mülleri", "normalized":"Ortygospiza atricollis mulleri", "canonical":"Ortygospiza atricollis mulleri", "hybrid":false, "details":[{"genus":{"string":"Ortygospiza"}, "species":{"string":"atricollis"}, "infraspecies":[{"string":"mulleri", "rank":"n/a"}]}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 22], "23":["infraspecies", 30]}}}
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103
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104
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#infraspecies with rank
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105
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Aus bus Linn. var. bus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Aus bus Linn. var. bus", "normalized":"Aus bus Linn. var. bus", "canonical":"Aus bus bus", "hybrid":false, "details":[{"genus":{"string":"Aus"}, "species":{"string":"bus", "authorship":"Linn.", "basionymAuthorTeam":{"authorTeam":"Linn.", "author":["Linn."]}}, "infraspecies":[{"string":"bus", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 7], "8":["author_word", 13], "14":["infraspecific_type", 18], "19":["infraspecies", 22]}}}
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106
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Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987", "normalized":"Agalinis purpurea (L.) Briton var. borealis (Berg.) Peterson 1987", "canonical":"Agalinis purpurea borealis", "hybrid":false, "details":[{"genus":{"string":"Agalinis"}, "species":{"string":"purpurea", "authorship":"(L.) Briton", "combinationAuthorTeam":{"authorTeam":"Briton", "author":["Briton"]}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"borealis", "rank":"var.", "authorship":"(Berg.) Peterson 1987", "combinationAuthorTeam":{"authorTeam":"Peterson", "author":["Peterson"], "year":"1987"}, "basionymAuthorTeam":{"authorTeam":"Berg.", "author":["Berg."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 17], "19":["author_word", 21], "23":["author_word", 29], "30":["infraspecific_type", 34], "35":["infraspecies", 43], "45":["author_word", 50], "52":["author_word", 60], "61":["year", 65]}}}
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107
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Callideriphus flavicollis morph. reductus Fuchs 1961|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Callideriphus flavicollis morph. reductus Fuchs 1961", "normalized":"Callideriphus flavicollis morph. reductus Fuchs 1961", "canonical":"Callideriphus flavicollis reductus", "hybrid":false, "details":[{"genus":{"string":"Callideriphus"}, "species":{"string":"flavicollis"}, "infraspecies":[{"string":"reductus", "rank":"morph.", "authorship":"Fuchs 1961", "basionymAuthorTeam":{"authorTeam":"Fuchs", "author":["Fuchs"], "year":"1961"}}]}], "parser_run":1, "positions":{"0":["genus", 13], "14":["species", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 41], "42":["author_word", 47], "48":["year", 52]}}}
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108
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-
Caulerpa cupressoides forma nuda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Caulerpa cupressoides forma nuda", "normalized":"Caulerpa cupressoides
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109
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-
Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó", "normalized":"Chlorocyperus glaber
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147
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+
Caulerpa cupressoides forma nuda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Caulerpa cupressoides forma nuda", "normalized":"Caulerpa cupressoides forma nuda", "canonical":"Caulerpa cupressoides nuda", "hybrid":false, "details":[{"genus":{"string":"Caulerpa"}, "species":{"string":"cupressoides"}, "infraspecies":[{"string":"nuda", "rank":"forma"}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["infraspecific_type", 27], "28":["infraspecies", 32]}}}
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148
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Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó", "normalized":"Chlorocyperus glaber form. fasciculariforme (Lojac.) Soó", "canonical":"Chlorocyperus glaber fasciculariforme", "hybrid":false, "details":[{"genus":{"string":"Chlorocyperus"}, "species":{"string":"glaber"}, "infraspecies":[{"string":"fasciculariforme", "rank":"form.", "authorship":"(Lojac.) Soó", "combinationAuthorTeam":{"authorTeam":"Soó", "author":["Soó"]}, "basionymAuthorTeam":{"authorTeam":"Lojac.", "author":["Lojac."]}}]}], "parser_run":1, "positions":{"0":["genus", 13], "14":["species", 20], "21":["infraspecific_type", 26], "27":["infraspecies", 43], "45":["author_word", 51], "53":["author_word", 56]}}}
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110
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Sphaerotheca fuliginea f. dahliae Movss. 1967|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sphaerotheca fuliginea f. dahliae Movss. 1967", "normalized":"Sphaerotheca fuliginea f. dahliae Movss. 1967", "canonical":"Sphaerotheca fuliginea dahliae", "hybrid":false, "details":[{"genus":{"string":"Sphaerotheca"}, "species":{"string":"fuliginea"}, "infraspecies":[{"string":"dahliae", "rank":"f.", "authorship":"Movss. 1967", "basionymAuthorTeam":{"authorTeam":"Movss.", "author":["Movss."], "year":"1967"}}]}], "parser_run":1, "positions":{"0":["genus", 12], "16":["species", 25], "29":["infraspecific_type", 31], "36":["infraspecies", 43], "47":["author_word", 53], "58":["year", 62]}}}
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111
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Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "normalized":"Polypodium vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "canonical":"Polypodium vulgare mantoniae", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"mantoniae", "rank":"nothosubsp.", "authorship":"(Rothm.) Schidlay", "combinationAuthorTeam":{"authorTeam":"Schidlay", "author":["Schidlay"]}, "basionymAuthorTeam":{"authorTeam":"Rothm.", "author":["Rothm."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "19":["infraspecific_type", 30], "31":["infraspecies", 40], "42":["author_word", 48], "50":["author_word", 58]}}}
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112
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Allophylus amazonicus var amazonicus|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Allophylus amazonicus var amazonicus", "normalized":"Allophylus amazonicus var amazonicus", "canonical":"Allophylus amazonicus amazonicus", "hybrid":false, "details":[{"genus":{"string":"Allophylus"}, "species":{"string":"amazonicus"}, "infraspecies":[{"string":"amazonicus", "rank":"var"}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["infraspecific_type", 25], "26":["infraspecies", 36]}}}
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@@ -115,14 +154,45 @@ Polypodium pectinatum (L.) f. typica Rosenst.|{"scientificName":{"parsed":true,
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Polypodium pectinatum L. f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. typica Rosenst.", "normalized":"Polypodium pectinatum L. f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"typica", "rank":"f.", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 34], "35":["author_word", 43]}}}
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# TODO: the following phrasing can be ambiguous. Does f mean forma or filius? Currently capturing it as filius
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Polypodium pectinatum L.f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L.f. typica Rosenst.", "normalized":"Polypodium pectinatum L.f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.f.", "basionymAuthorTeam":{"authorTeam":"L.f.", "author":["L.f."]}}, "infraspecies":[{"string":"typica", "rank":"n/a", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 26], "27":["infraspecies", 33], "34":["author_word", 42]}}}
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118
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-
Polypodium pectinatum L. f.
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157
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Polypodium pectinatum L. f. typica Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f. typica Rosenst.", "normalized":"Polypodium pectinatum L. f. typica Rosenst.", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}, "infraspecies":[{"string":"typica", "rank":"f.", "authorship":"Rosenst.", "basionymAuthorTeam":{"authorTeam":"Rosenst.", "author":["Rosenst."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["infraspecific_type", 27], "28":["infraspecies", 34], "35":["author_word", 43]}}}
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Polypodium lineare C.Chr. f. caudatoattenuatum Takeda|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "normalized":"Polypodium lineare C.Chr. f. caudatoattenuatum Takeda", "canonical":"Polypodium lineare caudatoattenuatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"lineare", "authorship":"C.Chr.", "basionymAuthorTeam":{"authorTeam":"C.Chr.", "author":["C.Chr."]}}, "infraspecies":[{"string":"caudatoattenuatum", "rank":"f.", "authorship":"Takeda", "basionymAuthorTeam":{"authorTeam":"Takeda", "author":["Takeda"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 18], "19":["author_word", 25], "26":["infraspecific_type", 28], "29":["infraspecies", 46], "47":["author_word", 53]}}}
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Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "normalized":"Rhododendron weyrichii Maxim. f. albiflorum T.Yamaz.", "canonical":"Rhododendron weyrichii albiflorum", "hybrid":false, "details":[{"genus":{"string":"Rhododendron"}, "species":{"string":"weyrichii", "authorship":"Maxim.", "basionymAuthorTeam":{"authorTeam":"Maxim.", "author":["Maxim."]}}, "infraspecies":[{"string":"albiflorum", "rank":"f.", "authorship":"T.Yamaz.", "basionymAuthorTeam":{"authorTeam":"T.Yamaz.", "author":["T.Yamaz."]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 22], "23":["author_word", 29], "30":["infraspecific_type", 32], "33":["infraspecies", 43], "44":["author_word", 52]}}}
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160
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Armeria maaritima (Mill.) Willd. fma. originaria Bern.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "normalized":"Armeria maaritima (Mill.) Willd. fma. originaria Bern.", "canonical":"Armeria maaritima originaria", "hybrid":false, "details":[{"genus":{"string":"Armeria"}, "species":{"string":"maaritima", "authorship":"(Mill.) Willd.", "combinationAuthorTeam":{"authorTeam":"Willd.", "author":["Willd."]}, "basionymAuthorTeam":{"authorTeam":"Mill.", "author":["Mill."]}}, "infraspecies":[{"string":"originaria", "rank":"fma.", "authorship":"Bern.", "basionymAuthorTeam":{"authorTeam":"Bern.", "author":["Bern."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 24], "26":["author_word", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 48], "49":["author_word", 54]}}}
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161
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Cotoneaster (Pyracantha) rogersiana var.aurantiaca|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cotoneaster (Pyracantha) rogersiana var.aurantiaca", "normalized":"Cotoneaster (Pyracantha) rogersiana var. aurantiaca", "canonical":"Cotoneaster rogersiana aurantiaca", "hybrid":false, "details":[{"genus":{"string":"Cotoneaster"}, "infragenus":{"string":"Pyracantha"}, "species":{"string":"rogersiana"}, "infraspecies":[{"string":"aurantiaca", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 11], "13":["infragenus", 23], "25":["species", 35], "36":["infraspecific_type", 40], "40":["infraspecies", 50]}}}
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162
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Poa annua fo varia|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Poa annua fo varia", "normalized":"Poa annua fo varia", "canonical":"Poa annua varia", "hybrid":false, "details":[{"genus":{"string":"Poa"}, "species":{"string":"annua"}, "infraspecies":[{"string":"varia", "rank":"fo"}]}], "parser_run":1, "positions":{"0":["genus", 3], "4":["species", 9], "10":["infraspecific_type", 12], "13":["infraspecies", 18]}}}
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163
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+
#TODO: Homalanthus nutans (Mull.Arg.) Benth. & Hook. f. ex Drake|{}
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121
164
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122
165
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#infraspecies_multiple
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123
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-
Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "normalized":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall
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124
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Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss.
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166
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+
Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "normalized":"Hydnellum scrobiculatum var. zonatum f. parvum (Banker) D. Hall & D.E. Stuntz 1972", "canonical":"Hydnellum scrobiculatum zonatum parvum", "hybrid":false, "details":[{"genus":{"string":"Hydnellum"}, "species":{"string":"scrobiculatum"}, "infraspecies":[{"string":"zonatum", "rank":"var."}, {"string":"parvum", "rank":"f.", "authorship":"(Banker) D. Hall & D.E. Stuntz 1972", "combinationAuthorTeam":{"authorTeam":"D. Hall & D.E. Stuntz", "author":["D. Hall", "D.E. Stuntz"], "year":"1972"}, "basionymAuthorTeam":{"authorTeam":"Banker", "author":["Banker"]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["infraspecific_type", 39], "40":["infraspecies", 46], "48":["author_word", 54], "56":["author_word", 58], "59":["author_word", 63], "66":["author_word", 70], "71":["author_word", 77], "78":["year", 82]}}}
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167
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+
Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. expansus (Boiss. & Heldr.) Hayek", "canonical":"Senecio fuchsii fuchsii expansus", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"fuchsii", "authorship":"C.C.Gmel.", "basionymAuthorTeam":{"authorTeam":"C.C.Gmel.", "author":["C.C.Gmel."]}}, "infraspecies":[{"string":"fuchsii", "rank":"subsp."}, {"string":"expansus", "rank":"var.", "authorship":"(Boiss. & Heldr.) Hayek", "combinationAuthorTeam":{"authorTeam":"Hayek", "author":["Hayek"]}, "basionymAuthorTeam":{"authorTeam":"Boiss. & Heldr.", "author":["Boiss.", "Heldr."]}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["author_word", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 40], "41":["infraspecific_type", 45], "46":["infraspecies", 54], "56":["author_word", 62], "65":["author_word", 71], "73":["author_word", 78]}}}
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125
168
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Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii", "normalized":"Senecio fuchsii C.C.Gmel. subsp. fuchsii var. fuchsii", "canonical":"Senecio fuchsii fuchsii fuchsii", "hybrid":false, "details":[{"genus":{"string":"Senecio"}, "species":{"string":"fuchsii", "authorship":"C.C.Gmel.", "basionymAuthorTeam":{"authorTeam":"C.C.Gmel.", "author":["C.C.Gmel."]}}, "infraspecies":[{"string":"fuchsii", "rank":"subsp."}, {"string":"fuchsii", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 15], "16":["author_word", 25], "26":["infraspecific_type", 32], "33":["infraspecies", 40], "41":["infraspecific_type", 45], "46":["infraspecies", 53]}}}
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169
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+
Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott", "normalized":"Euastrum divergens var. rhodesiense f. coronulum A.M. Scott & Prescott", "canonical":"Euastrum divergens rhodesiense coronulum", "hybrid":false, "details":[{"genus":{"string":"Euastrum"}, "species":{"string":"divergens"}, "infraspecies":[{"string":"rhodesiense", "rank":"var."}, {"string":"coronulum", "rank":"f.", "authorship":"A.M. Scott & Prescott", "basionymAuthorTeam":{"authorTeam":"A.M. Scott & Prescott", "author":["A.M. Scott", "Prescott"]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["infraspecific_type", 23], "24":["infraspecies", 35], "36":["infraspecific_type", 38], "39":["infraspecies", 48], "49":["author_word", 53], "54":["author_word", 59], "62":["author_word", 70]}}}
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170
|
+
|
171
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+
#species and infraspecies without epithets, comparisons
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172
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+
Acarinina aff. pentacamerata|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acarinina aff. pentacamerata", "normalized":"Acarinina", "canonical":"Acarinina", "hybrid":false, "details":[{"genus":{"string":"Acarinina"}, "annotation_identification":"aff.", "ignored":{"species":{"string":"pentacamerata"}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["annotation_identification", 14]}}}
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173
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+
Acarinina aff pentacamerata|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acarinina aff pentacamerata", "normalized":"Acarinina", "canonical":"Acarinina", "hybrid":false, "details":[{"genus":{"string":"Acarinina"}, "annotation_identification":"aff", "ignored":{"species":{"string":"pentacamerata"}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["annotation_identification", 14]}}}
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174
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+
Abturia cf. alabamensis (Morton )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abturia cf. alabamensis (Morton )", "normalized":"Abturia cf. alabamensis (Morton)", "canonical":"Abturia alabamensis", "hybrid":false, "details":[{"genus":{"string":"Abturia"}, "annotation_identification":"cf.", "species":{"species":{"string":"alabamensis", "authorship":"(Morton )", "basionymAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["annotation_identification", 11], "12":["species", 23], "25":["author_word", 31]}}}
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175
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+
Abturia cf alabamensis (Morton )|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abturia cf alabamensis (Morton )", "normalized":"Abturia cf alabamensis (Morton)", "canonical":"Abturia alabamensis", "hybrid":false, "details":[{"genus":{"string":"Abturia"}, "annotation_identification":"cf", "species":{"species":{"string":"alabamensis", "authorship":"(Morton )", "basionymAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}}}}], "parser_run":1, "positions":{"0":["genus", 7], "8":["annotation_identification", 11], "11":["species", 22], "24":["author_word", 30]}}}
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176
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+
Alyxia reinwardti var|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti var", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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177
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Alyxia reinwardti var.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti var.", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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178
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Alyxia reinwardti ssp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti ssp", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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179
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Alyxia reinwardti ssp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alyxia reinwardti ssp.", "normalized":"Alyxia reinwardti", "canonical":"Alyxia reinwardti", "hybrid":false, "details":[{"genus":{"string":"Alyxia"}, "species":{"string":"reinwardti"}}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 17]}}}
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180
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Alaria spp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alaria spp", "normalized":"Alaria", "canonical":"Alaria", "hybrid":false, "details":[{"uninomial":{"string":"Alaria"}}], "parser_run":1, "positions":{"0":["uninomial", 6]}}}
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181
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Alaria spp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Alaria spp.", "normalized":"Alaria", "canonical":"Alaria", "hybrid":false, "details":[{"uninomial":{"string":"Alaria"}}], "parser_run":1, "positions":{"0":["uninomial", 6]}}}
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182
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Xenodon sp|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Xenodon sp", "normalized":"Xenodon", "canonical":"Xenodon", "hybrid":false, "details":[{"uninomial":{"string":"Xenodon"}}], "parser_run":1, "positions":{"0":["uninomial", 7]}}}
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183
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Xenodon sp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Xenodon sp.", "normalized":"Xenodon", "canonical":"Xenodon", "hybrid":false, "details":[{"uninomial":{"string":"Xenodon"}}], "parser_run":1, "positions":{"0":["uninomial", 7]}}}
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184
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Formicidae cf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Formicidae cf.", "normalized":"Formicidae", "canonical":"Formicidae", "hybrid":false, "details":[{"uninomial":{"string":"Formicidae"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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185
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Formicidae cf|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Formicidae cf", "normalized":"Formicidae", "canonical":"Formicidae", "hybrid":false, "details":[{"uninomial":{"string":"Formicidae"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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186
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+
Acastoides spp.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acastoides spp.", "normalized":"Acastoides", "canonical":"Acastoides", "hybrid":false, "details":[{"uninomial":{"string":"Acastoides"}}], "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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187
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+
Sphingomonas sp. 37|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Sphingomonas sp. 37", "normalized":"Sphingomonas", "canonical":"Sphingomonas", "hybrid":false, "details":[{"genus":{"string":"Sphingomonas"}, "annotation_identification":"sp.", "ignored":{"unparsed":"37"}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["annotation_identification", 16]}}}
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188
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+
Thryothorus leucotis spp. bogotensis|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Thryothorus leucotis spp. bogotensis", "normalized":"Thryothorus leucotis", "canonical":"Thryothorus leucotis", "hybrid":false, "details":[{"genus":{"string":"Thryothorus"}, "species":{"string":"leucotis"}, "infraspecies":[{"annotation_identification":"spp.", "ignored":{"infraspecies":{"string":"bogotensis", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["annotation_identification", 25]}}}
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189
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Endoxyla sp. GM-, 2003|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Endoxyla sp. GM-, 2003", "normalized":"Endoxyla", "canonical":"Endoxyla", "hybrid":false, "details":[{"genus":{"string":"Endoxyla"}, "annotation_identification":"sp.", "ignored":{"unparsed":"GM-, 2003"}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12]}}}
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190
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Liopropoma sp.2 Not applicable|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Liopropoma sp.2 Not applicable", "normalized":"Liopropoma", "canonical":"Liopropoma", "hybrid":false, "details":[{"genus":{"string":"Liopropoma"}, "annotation_identification":"sp.", "ignored":{"unparsed":"2 Not applicable"}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["annotation_identification", 14]}}}
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191
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+
Lacanobia nr. subjuncta Bold:Aab, 0925|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Lacanobia nr. subjuncta Bold:Aab, 0925", "normalized":"Lacanobia", "canonical":"Lacanobia", "hybrid":false, "details":[{"genus":{"string":"Lacanobia"}, "annotation_identification":"nr.", "ignored":{"species":{"string":"subjuncta", "authorship":"Bold:Aab", "basionymAuthorTeam":{"authorTeam":"Bold:Aab", "author":["Bold:Aab"]}}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["annotation_identification", 13]}}}
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192
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Lacanobia sp. nr. subjuncta Bold:Aab, 0925|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Lacanobia sp. nr. subjuncta Bold:Aab, 0925", "normalized":"Lacanobia", "canonical":"Lacanobia", "hybrid":false, "details":[{"genus":{"string":"Lacanobia"}, "annotation_identification":"sp. nr.", "ignored":{"species":{"string":"subjuncta", "authorship":"Bold:Aab", "basionymAuthorTeam":{"authorTeam":"Bold:Aab", "author":["Bold:Aab"]}}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["annotation_identification", 17]}}}
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#Larus occidentalis cf. wymani|{}
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Calidris cf. cooperi|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Calidris cf. cooperi", "normalized":"Calidris cf. cooperi", "canonical":"Calidris cooperi", "hybrid":false, "details":[{"genus":{"string":"Calidris"}, "annotation_identification":"cf.", "species":{"species":{"string":"cooperi"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["annotation_identification", 12], "13":["species", 20]}}}
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#TODO:Gemmula cf. cosmoi NP-2008 -- generates wrong authorship
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#unknown authorship
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Tragacantha leporina (?) Kuntze|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Tragacantha leporina (?) Kuntze","normalized":"Tragacantha leporina (?) Kuntze","canonical":"Tragacantha leporina","hybrid":false,"details":[{"genus":{"string":"Tragacantha"},"species":{"string":"leporina","authorship":"(?) Kuntze","combinationAuthorTeam":{"authorTeam":"Kuntze","author":["Kuntze"]},"basionymAuthorTeam":{"authorTeam":"(?)","author":["?"]}}}],"positions":{"0":["genus",11],"12":["species",20],"22":["unknown_author",23],"25":["author_word",31]}}}
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@@ -135,13 +205,13 @@ Puya acris anon.|{"scientificName":{"parsed":true, "parser_version":"test_versio
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135
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Puya acris hort.|{"scientificName":{"parsed":true, "verbatim":"Puya acris hort.", "normalized":"Puya acris", "canonical":"Puya acris", "hybrid":false, "details":[{"genus":{"string":"Puya"}, "species":{"string":"acris"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 4], "5":["species", 10]}}}
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Prunus mexicana S. Watson var. reticulata (Sarg.) Sarg.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Prunus mexicana S. Watson var. reticulata (Sarg.) Sarg.", "normalized":"Prunus mexicana S. Watson var. reticulata (Sarg.) Sarg.", "canonical":"Prunus mexicana reticulata", "hybrid":false, "details":[{"genus":{"string":"Prunus"}, "species":{"string":"mexicana", "authorship":"S. Watson", "basionymAuthorTeam":{"authorTeam":"S. Watson", "author":["S. Watson"]}}, "infraspecies":[{"string":"reticulata", "rank":"var.", "authorship":"(Sarg.) Sarg.", "combinationAuthorTeam":{"authorTeam":"Sarg.", "author":["Sarg."]}, "basionymAuthorTeam":{"authorTeam":"Sarg.", "author":["Sarg."]}}]}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 15], "16":["author_word", 18], "19":["author_word", 25], "26":["infraspecific_type", 30], "31":["infraspecies", 41], "43":["author_word", 48], "50":["author_word", 55]}}}
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#miscellaneous names
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138
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Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet", "normalized":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter
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139
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Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas
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Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas
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Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom
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142
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Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman
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208
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+
Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet", "normalized":"Fagus sylvatica subsp. orientalis (Lipsky) Greuter & Burdet", "canonical":"Fagus sylvatica orientalis", "hybrid":false, "details":[{"genus":{"string":"Fagus"}, "species":{"string":"sylvatica"}, "infraspecies":[{"string":"orientalis", "rank":"subsp.", "authorship":"(Lipsky) Greuter & Burdet", "combinationAuthorTeam":{"authorTeam":"Greuter & Burdet", "author":["Greuter", "Burdet"]}, "basionymAuthorTeam":{"authorTeam":"Lipsky", "author":["Lipsky"]}}]}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15], "16":["infraspecific_type", 22], "23":["infraspecies", 33], "35":["author_word", 41], "43":["author_word", 50], "53":["author_word", 59]}}}
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209
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Stagonospora polyspora M.T. Lucas & Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"string":"Stagonospora"},"species":{"string":"polyspora","authorship":"M.T. Lucas & Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas & Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"36":["author_word",41],"42":["author_word",44],"45":["author_word",51],"52":["year",56]}}}
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Stagonospora polyspora M.T. Lucas et Sousa da Câmara 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Stagonospora polyspora M.T. Lucas et Sousa da C\u00e2mara 1934","normalized":"Stagonospora polyspora M.T. Lucas & Sousa da C\u00e2mara 1934","canonical":"Stagonospora polyspora","hybrid":false,"details":[{"genus":{"string":"Stagonospora"},"species":{"string":"polyspora","authorship":"M.T. Lucas et Sousa da C\u00e2mara 1934","basionymAuthorTeam":{"authorTeam":"M.T. Lucas et Sousa da C\u00e2mara","author":["M.T. Lucas","Sousa da C\u00e2mara"],"year":"1934"}}}],"positions":{"0":["genus",12],"13":["species",22],"23":["author_word",27],"28":["author_word",33],"37":["author_word",42],"43":["author_word",45],"46":["author_word",52],"53":["year",57]}}}
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+
Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","normalized":"Cladoniicola staurospora Diederich, van den Boom & Aptroot 2001","canonical":"Cladoniicola staurospora","hybrid":false,"details":[{"genus":{"string":"Cladoniicola"},"species":{"string":"staurospora","authorship":"Diederich, van den Boom & Aptroot 2001","basionymAuthorTeam":{"authorTeam":"Diederich, van den Boom & Aptroot","author":["Diederich","van den Boom","Aptroot"],"year":"2001"}}}],"positions":{"0":["genus",12],"13":["species",24],"25":["author_word",34],"36":["author_word",39],"40":["author_word",43],"44":["author_word",48],"51":["author_word",58],"59":["year",63]}}}
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Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "normalized":"Yarrowia lipolytica var. lipolytica (Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "canonical":"Yarrowia lipolytica lipolytica", "hybrid":false, "details":[{"genus":{"string":"Yarrowia"}, "species":{"string":"lipolytica"}, "infraspecies":[{"string":"lipolytica", "rank":"var.", "authorship":"(Wick., Kurtzman & E.A. Herrm.) Van der Walt & Arx 1981", "combinationAuthorTeam":{"authorTeam":"Van der Walt & Arx", "author":["Van der Walt", "Arx"], "year":"1981"}, "basionymAuthorTeam":{"authorTeam":"Wick., Kurtzman & E.A. Herrm.", "author":["Wick.", "Kurtzman", "E.A. Herrm."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19], "20":["infraspecific_type", 24], "25":["infraspecies", 35], "37":["author_word", 42], "44":["author_word", 52], "55":["author_word", 59], "60":["author_word", 66], "68":["author_word", 71], "72":["author_word", 75], "76":["author_word", 80], "83":["author_word", 86], "87":["year", 91]}}}
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Physalospora rubiginosa (Fr.) anon.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Physalospora rubiginosa (Fr.) anon.","normalized":"Physalospora rubiginosa (Fr.) anon.","canonical":"Physalospora rubiginosa","hybrid":false,"details":[{"genus":{"string":"Physalospora"},"species":{"string":"rubiginosa","authorship":"(Fr.) anon.","combinationAuthorTeam":{"authorTeam":"anon.","author":["unknown"]},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",28],"30":["unknown_author",35]}}}
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144
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Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true, "parser_version":"test_version", "
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214
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+
Pleurotus ëous (Berk.) Sacc. 1887|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pleurotus ëous (Berk.) Sacc. 1887", "normalized":"Pleurotus eous (Berk.) Sacc. 1887", "canonical":"Pleurotus eous", "hybrid":false, "details":[{"genus":{"string":"Pleurotus"}, "species":{"string":"eous", "authorship":"(Berk.) Sacc. 1887", "combinationAuthorTeam":{"authorTeam":"Sacc.", "author":["Sacc."], "year":"1887"}, "basionymAuthorTeam":{"authorTeam":"Berk.", "author":["Berk."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 14], "16":["author_word", 21], "23":["author_word", 28], "29":["year", 33]}}}
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Lecanora wetmorei Śliwa 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Lecanora wetmorei \u015aliwa 2004","normalized":"Lecanora wetmorei \u015aliwa 2004","canonical":"Lecanora wetmorei","hybrid":false,"details":[{"genus":{"string":"Lecanora"},"species":{"string":"wetmorei","authorship":"\u015aliwa 2004","basionymAuthorTeam":{"authorTeam":"\u015aliwa","author":["\u015aliwa"],"year":"2004"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"24":["year",28]}}}
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146
216
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Calicium furfuraceum * furfuraceum (L.) Pers. 1797|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797", "normalized":"Calicium furfuraceum * furfuraceum (L.) Pers. 1797", "canonical":"Calicium furfuraceum furfuraceum", "hybrid":false, "details":[{"genus":{"string":"Calicium"}, "species":{"string":"furfuraceum"}, "infraspecies":[{"string":"furfuraceum", "rank":"*", "authorship":"(L.) Pers. 1797", "combinationAuthorTeam":{"authorTeam":"Pers.", "author":["Pers."], "year":"1797"}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 20], "21":["infraspecific_type", 22], "23":["infraspecies", 34], "36":["author_word", 38], "40":["author_word", 45], "46":["year", 50]}}}
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217
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Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882", "normalized":"Exobasidium vaccinii ** andromedae (P. Karst.) P. Karst. 1882", "canonical":"Exobasidium vaccinii andromedae", "hybrid":false, "details":[{"genus":{"string":"Exobasidium"}, "species":{"string":"vaccinii"}, "infraspecies":[{"string":"andromedae", "rank":"**", "authorship":"(P. Karst.) P. Karst. 1882", "combinationAuthorTeam":{"authorTeam":"P. Karst.", "author":["P. Karst."], "year":"1882"}, "basionymAuthorTeam":{"authorTeam":"P. Karst.", "author":["P. Karst."]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 20], "21":["infraspecific_type", 23], "24":["infraspecies", 34], "36":["author_word", 38], "39":["author_word", 45], "47":["author_word", 49], "50":["author_word", 56], "57":["year", 61]}}}
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@@ -150,8 +220,8 @@ Cortinarius angulatus B gracilescens Fr. 1838|{"scientificName":{"parsed":true,
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150
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Cyathicula scelobelonium|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Cyathicula scelobelonium","normalized":"Cyathicula scelobelonium","canonical":"Cyathicula scelobelonium","hybrid":false,"details":[{"genus":{"string":"Cyathicula"},"species":{"string":"scelobelonium"}}],"positions":{"0":["genus",10],"11":["species",24]}}}
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Tuber liui A S. Xu 1999|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Tuber liui A S. Xu 1999","normalized":"Tuber liui A S. Xu 1999","canonical":"Tuber liui","hybrid":false,"details":[{"genus":{"string":"Tuber"},"species":{"string":"liui","authorship":"A S. Xu 1999","basionymAuthorTeam":{"authorTeam":"A S. Xu","author":["A S. Xu"],"year":"1999"}}}],"positions":{"0":["genus",5],"6":["species",10],"11":["author_word",1],"13":["author_word",2],"16":["author_word",2],"19":["year",23]}}}
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Xylaria potentillae A S. Xu|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Xylaria potentillae A S. Xu","normalized":"Xylaria potentillae A S. Xu","canonical":"Xylaria potentillae","hybrid":false,"details":[{"genus":{"string":"Xylaria"},"species":{"string":"potentillae","authorship":"A S. Xu","basionymAuthorTeam":{"authorTeam":"A S. Xu","author":["A S. Xu"]}}}],"positions":{"0":["genus",7],"8":["species",19],"20":["author_word",1],"22":["author_word",2],"25":["author_word",2]}}}
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153
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Agaricus squamula Berk. & M.A. Curtis 1860|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agaricus squamula Berk. & M.A. Curtis 1860","normalized":"Agaricus squamula Berk.
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154
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Peltula coriacea Büdel, Henssen & Wessels 1986|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","normalized":"Peltula coriacea B\u00fcdel, Henssen
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223
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+
Agaricus squamula Berk. & M.A. Curtis 1860|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agaricus squamula Berk. & M.A. Curtis 1860","normalized":"Agaricus squamula Berk. & M.A. Curtis 1860","canonical":"Agaricus squamula","hybrid":false,"details":[{"genus":{"string":"Agaricus"},"species":{"string":"squamula","authorship":"Berk. & M.A. Curtis 1860","basionymAuthorTeam":{"authorTeam":"Berk. & M.A. Curtis","author":["Berk.","M.A. Curtis"],"year":"1860"}}}],"positions":{"0":["genus",8],"9":["species",17],"18":["author_word",23],"26":["author_word",30],"31":["author_word",37],"38":["year",42]}}}
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+
Peltula coriacea Büdel, Henssen & Wessels 1986|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","normalized":"Peltula coriacea B\u00fcdel, Henssen & Wessels 1986","canonical":"Peltula coriacea","hybrid":false,"details":[{"genus":{"string":"Peltula"},"species":{"string":"coriacea","authorship":"B\u00fcdel, Henssen & Wessels 1986","basionymAuthorTeam":{"authorTeam":"B\u00fcdel, Henssen & Wessels","author":["B\u00fcdel","Henssen","Wessels"],"year":"1986"}}}],"positions":{"0":["genus",7],"8":["species",16],"17":["author_word",22],"24":["author_word",31],"34":["author_word",41],"42":["year",46]}}}
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Saccharomyces drosophilae anon.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Saccharomyces drosophilae anon.","normalized":"Saccharomyces drosophilae anon.","canonical":"Saccharomyces drosophilae","hybrid":false,"details":[{"genus":{"string":"Saccharomyces"},"species":{"string":"drosophilae","authorship":"anon.","basionymAuthorTeam":{"authorTeam":"anon.","author":["unknown"]}}}],"positions":{"0":["genus",13],"14":["species",25],"26":["unknown_author",31]}}}
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Abacetus laevicollis de Chaudoir, 1869|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Abacetus laevicollis de Chaudoir, 1869","normalized":"Abacetus laevicollis de Chaudoir 1869","canonical":"Abacetus laevicollis","hybrid":false,"details":[{"genus":{"string":"Abacetus"},"species":{"string":"laevicollis","authorship":"de Chaudoir, 1869","basionymAuthorTeam":{"authorTeam":"de Chaudoir","author":["de Chaudoir"],"year":"1869"}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"24":["author_word",32],"34":["year",38]}}}
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Gastrosericus eremorum von Beaumont 1955|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Gastrosericus eremorum von Beaumont 1955","normalized":"Gastrosericus eremorum von Beaumont 1955","canonical":"Gastrosericus eremorum","hybrid":false,"details":[{"genus":{"string":"Gastrosericus"},"species":{"string":"eremorum","authorship":"von Beaumont 1955","basionymAuthorTeam":{"authorTeam":"von Beaumont","author":["von Beaumont"],"year":"1955"}}}],"positions":{"0":["genus",13],"14":["species",22],"23":["author_word",26],"27":["author_word",35],"36":["year",40]}}}
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@@ -168,7 +238,7 @@ Acanthobasidium delicatum (Wakef.) Oberw. ex Jülich 1979|{"scientificName":{"pa
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Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr. ex Duby) Johanson ex Oudem. 1897","canonical":"Mycosphaerella eryngii","hybrid":false,"details":[{"genus":{"string":"Mycosphaerella"},"species":{"string":"eryngii","authorship":"(Fr. ex Duby) Johanson ex Oudem. 1897","combinationAuthorTeam":{"authorTeam":"Johanson","author":["Johanson"],"exAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}},"basionymAuthorTeam":{"authorTeam":"Fr.","author":["Fr."],"exAuthorTeam":{"authorTeam":"Duby","author":["Duby"]}}}}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",27],"31":["author_word",35],"37":["author_word",45],"49":["author_word",55],"56":["year",60]}}}
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Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr. Duby) ex Oudem. 1897","canonical":"Mycosphaerella eryngii ex","hybrid":false,"details":[{"genus":{"string":"Mycosphaerella"},"species":{"string":"eryngii","authorship":"(Fr. Duby)","basionymAuthorTeam":{"authorTeam":"Fr. Duby","author":["Fr. Duby"]}},"infraspecies":[{"string":"ex","rank":"n\/a","authorship":"Oudem. 1897","basionymAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}}]}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",27],"28":["author_word",32],"34":["infraspecies",36],"37":["author_word",43],"44":["year",48]}}}
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Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897","normalized":"Mycosphaerella eryngii (Fr.ex Duby) ex Oudem. 1897","canonical":"Mycosphaerella eryngii ex","hybrid":false,"details":[{"genus":{"string":"Mycosphaerella"},"species":{"string":"eryngii","authorship":"(Fr.ex Duby)","basionymAuthorTeam":{"authorTeam":"Fr.ex Duby","author":["Fr.ex Duby"]}},"infraspecies":[{"string":"ex","rank":"n\/a","authorship":"Oudem. 1897","basionymAuthorTeam":{"authorTeam":"Oudem.","author":["Oudem."],"year":"1897"}}]}],"positions":{"0":["genus",14],"15":["species",22],"24":["author_word",29],"30":["author_word",34],"36":["infraspecies",38],"39":["author_word",45],"46":["year",50]}}}
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Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937","normalized":"Salmonella werahensis (Castellani) Hauduroy
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Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salmonella werahensis (Castellani) Hauduroy and Ehringer in Hauduroy 1937","normalized":"Salmonella werahensis (Castellani) Hauduroy & Ehringer ex Hauduroy 1937","canonical":"Salmonella werahensis","hybrid":false,"details":[{"genus":{"string":"Salmonella"},"species":{"string":"werahensis","authorship":"(Castellani) Hauduroy and Ehringer in Hauduroy 1937","combinationAuthorTeam":{"authorTeam":"Hauduroy and Ehringer","author":["Hauduroy","Ehringer"],"exAuthorTeam":{"authorTeam":"Hauduroy","author":["Hauduroy"],"year":"1937"}},"basionymAuthorTeam":{"authorTeam":"Castellani","author":["Castellani"]}}}],"positions":{"0":["genus",10],"11":["species",21],"23":["author_word",33],"35":["author_word",43],"48":["author_word",56],"60":["author_word",68],"69":["year",73]}}}
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#named hybrids
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×Agropogon P. Fourn. 1934|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"\u00d7Agropogon P. Fourn. 1934","normalized":"\u00d7 Agropogon P. Fourn. 1934","canonical":"Agropogon","hybrid":true,"details":[{"uninomial":{"string":"Agropogon","authorship":"P. Fourn. 1934","basionymAuthorTeam":{"authorTeam":"P. Fourn.","author":["P. Fourn."],"year":"1934"}}}],"positions":{"1":["uninomial",10],"11":["author_word",13],"14":["author_word",20],"21":["year",25]}}}
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@@ -188,12 +258,14 @@ Salix ×capreola Andersson (1867)|{"scientificName":{"parsed":true, "parser_vers
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Salix x capreola Andersson|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Salix x capreola Andersson","normalized":"Salix \u00d7 capreola Andersson","canonical":"Salix capreola","hybrid":true,"details":[{"genus":{"string":"Salix"},"species":{"string":"capreola","authorship":"Andersson","basionymAuthorTeam":{"authorTeam":"Andersson","author":["Andersson"]}}}],"positions":{"0":["genus",5],"8":["species",16],"17":["author_word",26]}}}
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#hybrid formula
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Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stanhopea tigrina Bateman ex Lindl. x S. ecornuta Lem.", "normalized":"Stanhopea tigrina Bateman ex Lindl. × S. ecornuta Lem.", "canonical":"Stanhopea tigrina × S. ecornuta", "hybrid":true, "details":[{"genus":{"string":"Stanhopea"}, "species":{"string":"tigrina", "authorship":"Bateman ex Lindl.", "basionymAuthorTeam":{"authorTeam":"Bateman", "author":["Bateman"], "exAuthorTeam":{"authorTeam":"Lindl.", "author":["Lindl."]}}}}, {"genus":{"string":"S."}, "species":{"string":"ecornuta", "authorship":"Lem.", "basionymAuthorTeam":{"authorTeam":"Lem.", "author":["Lem."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["author_word", 25], "29":["author_word", 35], "38":["genus", 41], "41":["species", 49], "50":["author_word", 54]}}}
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Arthopyrenia hyalospora X Hydnellum scrobiculatum|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora X Hydnellum scrobiculatum","normalized":"Arthopyrenia hyalospora \u00d7 Hydnellum scrobiculatum","canonical":"Arthopyrenia hyalospora × Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum"}}],"positions":{"0":["genus",12],"13":["species",23],"26":["genus",35],"36":["species",49]}}}
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Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora (Banker) D. Hall X Hydnellum scrobiculatum D.E. Stuntz","normalized":"Arthopyrenia hyalospora (Banker) D. Hall \u00d7 Hydnellum scrobiculatum D.E. Stuntz","canonical":"Arthopyrenia hyalospora × Hydnellum scrobiculatum","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora","authorship":"(Banker) D. Hall","combinationAuthorTeam":{"authorTeam":"D. Hall","author":["D. Hall"]},"basionymAuthorTeam":{"authorTeam":"Banker","author":["Banker"]}}},{"genus":{"string":"Hydnellum"},"species":{"string":"scrobiculatum","authorship":"D.E. Stuntz","basionymAuthorTeam":{"authorTeam":"D.E. Stuntz","author":["D.E. Stuntz"]}}}],"positions":{"0":["genus",12],"13":["species",23],"25":["author_word",31],"33":["author_word",35],"36":["author_word",40],"43":["genus",52],"53":["species",66],"67":["author_word",71],"72":["author_word",78]}}}
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Arthopyrenia hyalospora x|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora x","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
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Arthopyrenia hyalospora × ?|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Arthopyrenia hyalospora \u00d7 ?","normalized":"Arthopyrenia hyalospora \u00d7 ?","canonical":"Arthopyrenia hyalospora","hybrid":true,"details":[{"genus":{"string":"Arthopyrenia"},"species":{"string":"hyalospora"}},"?"],"positions":{"0":["genus",12],"13":["species",23]}}}
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Agrostis L. × Polypogon Desf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agrostis L. \u00d7 Polypogon Desf.","normalized":"Agrostis L. \u00d7 Polypogon Desf.","canonical":"Agrostis × Polypogon","hybrid":true,"details":[{"uninomial":{"string":"Agrostis","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"uninomial":{"string":"Polypogon","authorship":"Desf.","basionymAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]}}}],"positions":{"0":["uninomial",8],"9":["author_word",11],"14":["uninomial",23],"24":["author_word",29]}}}
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Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":1,"verbatim":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","normalized":"Agrostis stolonifera L. \u00d7 Polypogon monspeliensis (L.) Desf.","canonical":"Agrostis stolonifera × Polypogon monspeliensis","hybrid":true,"details":[{"genus":{"string":"Agrostis"},"species":{"string":"stolonifera","authorship":"L.","basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}},{"genus":{"string":"Polypogon"},"species":{"string":"monspeliensis","authorship":"(L.) Desf.","combinationAuthorTeam":{"authorTeam":"Desf.","author":["Desf."]},"basionymAuthorTeam":{"authorTeam":"L.","author":["L."]}}}],"positions":{"0":["genus",8],"9":["species",20],"21":["author_word",23],"26":["genus",35],"36":["species",49],"51":["author_word",53],"55":["author_word",60]}}}
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Coeloglossum viride (L.) Hartman x Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Coeloglossum viride (L.) Hartman x Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó", "normalized":"Coeloglossum viride (L.) Hartman × Dactylorhiza majalis (Rchb. f.) P.F. Hunt & Summerhayes ssp. praetermissa (Druce) D.M. Moore & Soó", "canonical":"Coeloglossum viride × Dactylorhiza majalis praetermissa", "hybrid":true, "details":[{"genus":{"string":"Coeloglossum"}, "species":{"string":"viride", "authorship":"(L.) Hartman", "combinationAuthorTeam":{"authorTeam":"Hartman", "author":["Hartman"]}, "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}}, {"genus":{"string":"Dactylorhiza"}, "species":{"string":"majalis", "authorship":"(Rchb. f.) P.F. Hunt & Summerhayes", "combinationAuthorTeam":{"authorTeam":"P.F. Hunt & Summerhayes", "author":["P.F. Hunt", "Summerhayes"]}, "basionymAuthorTeam":{"authorTeam":"Rchb. f.", "author":["Rchb. f."]}}, "infraspecies":[{"string":"praetermissa", "rank":"ssp.", "authorship":"(Druce) D.M. Moore & Soó", "combinationAuthorTeam":{"authorTeam":"D.M. Moore & Soó", "author":["D.M. Moore", "Soó"]}, "basionymAuthorTeam":{"authorTeam":"Druce", "author":["Druce"]}}]}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 19], "21":["author_word", 23], "25":["author_word", 32], "35":["genus", 47], "48":["species", 55], "57":["author_word", 62], "63":["author_word", 65], "67":["author_word", 71], "72":["author_word", 76], "79":["author_word", 90], "91":["infraspecific_type", 95], "96":["infraspecies", 108], "110":["author_word", 115], "117":["author_word", 121], "122":["author_word", 127], "130":["author_word", 133]}}}
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#TODO Asplenium rhizophyllum X A. ruta-muraria E.L. Braun 1939|''
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#TODO Asplenium rhizophyllum DC. x ruta-muraria E.L. Braun 1939|''
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#TODO Asplenium rhizophyllum x ruta-muraria|''
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@@ -204,16 +276,15 @@ Agrostis stolonifera L. × Polypogon monspeliensis (L.) Desf.|{"scientificName":
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Polypodium x vulgare nothosubsp. mantoniae (Rothm.) Schidlay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium x vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "normalized":"Polypodium × vulgare nothosubsp. mantoniae (Rothm.) Schidlay", "canonical":"Polypodium vulgare mantoniae", "hybrid":true, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"vulgare"}, "infraspecies":[{"string":"mantoniae", "rank":"nothosubsp.", "authorship":"(Rothm.) Schidlay", "combinationAuthorTeam":{"authorTeam":"Schidlay", "author":["Schidlay"]}, "basionymAuthorTeam":{"authorTeam":"Rothm.", "author":["Rothm."]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "14":["species", 21], "22":["infraspecific_type", 33], "34":["infraspecies", 43], "45":["author_word", 51], "53":["author_word", 61]}}}
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#empty spaces
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-
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-
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Asplenium Xinexpectatum(E. L. Braun ex Friesner )Morton |{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Asplenium Xinexpectatum(E. L. Braun ex Friesner )Morton", "normalized":"Asplenium × inexpectatum (E. L. Braun ex Friesner) Morton", "canonical":"Asplenium inexpectatum", "hybrid":true, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"inexpectatum", "authorship":"(E. L. Braun ex Friesner )Morton", "combinationAuthorTeam":{"authorTeam":"Morton", "author":["Morton"]}, "basionymAuthorTeam":{"authorTeam":"E. L. Braun", "author":["E. L. Braun"], "exAuthorTeam":{"authorTeam":"Friesner", "author":["Friesner"]}}}}], "parser_run":1, "positions":{"4":["genus", 13], "21":["species", 33], "34":["author_word", 36], "37":["author_word", 39], "40":["author_word", 45], "49":["author_word", 57], "64":["author_word", 70]}}}
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####
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#
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# Names with problems
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#
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####
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-
#removing
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#removing annotations
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Acarospora cratericola cratericola Shenk 1974 group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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Acarospora cratericola cratericola Shenk 1974 species group|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species group", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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Acarospora cratericola cratericola Shenk 1974 species complex|{"scientificName":{"parsed":true, "verbatim":"Acarospora cratericola cratericola Shenk 1974 species complex", "normalized":"Acarospora cratericola cratericola Shenk 1974", "canonical":"Acarospora cratericola cratericola", "hybrid":false, "details":[{"genus":{"string":"Acarospora"}, "species":{"string":"cratericola"}, "infraspecies":[{"string":"cratericola", "rank":"n/a", "authorship":"Shenk 1974", "basionymAuthorTeam":{"authorTeam":"Shenk", "author":["Shenk"], "year":"1974"}}]}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 22], "23":["infraspecies", 34], "35":["author_word", 40], "41":["year", 45]}}}
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@@ -237,16 +308,17 @@ Arenaria serpyllifolia L. s.str.|{"scientificName":{"parsed":true, "verbatim":"A
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Asplenium trichomanes L. s.lat. - Asplen trich|{"scientificName":{"parsed":true, "verbatim":"Asplenium trichomanes L. s.lat. - Asplen trich", "normalized":"Asplenium trichomanes L.", "canonical":"Asplenium trichomanes", "hybrid":false, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"trichomanes", "authorship":"L.", "basionymAuthorTeam":{"authorTeam":"L.", "author":["L."]}}}], "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 21], "22":["author_word", 24]}}}
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Asplenium anisophyllum Kunze, s.l.|{"scientificName":{"parsed":true, "verbatim":"Asplenium anisophyllum Kunze, s.l.", "normalized":"Asplenium anisophyllum Kunze", "canonical":"Asplenium anisophyllum", "hybrid":false, "details":[{"genus":{"string":"Asplenium"}, "species":{"string":"anisophyllum", "authorship":"Kunze", "basionymAuthorTeam":{"authorTeam":"Kunze", "author":["Kunze"]}}}], "parser_version":"test_version", "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 22], "23":["author_word", 28]}}}
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Abramis Cuvier 1816 sec. Dybowski 1862|{"scientificName":{"parsed":true, "verbatim":"Abramis Cuvier 1816 sec. Dybowski 1862", "normalized":"Abramis Cuvier 1816", "canonical":"Abramis", "hybrid":false, "details":[{"uninomial":{"string":"Abramis", "authorship":"Cuvier 1816", "basionymAuthorTeam":{"authorTeam":"Cuvier", "author":["Cuvier"], "year":"1816"}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["uninomial", 7], "8":["author_word", 14], "15":["year", 19]}}}
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Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004", "normalized":"Abramis brama subsp. bergi Grib
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Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Abramis brama subsp. bergi Grib & Vernidub 1935 sec Eschmeyer 2004", "normalized":"Abramis brama subsp. bergi Grib & Vernidub 1935", "canonical":"Abramis brama bergi", "hybrid":false, "details":[{"genus":{"string":"Abramis"}, "species":{"string":"brama"}, "infraspecies":[{"string":"bergi", "rank":"subsp.", "authorship":"Grib & Vernidub 1935", "basionymAuthorTeam":{"authorTeam":"Grib & Vernidub", "author":["Grib", "Vernidub"], "year":"1935"}}]}], "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 13], "14":["infraspecific_type", 20], "21":["infraspecies", 26], "27":["author_word", 31], "34":["author_word", 42], "43":["year", 47]}}}
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Abarema clypearia (Jack) Kosterm., P. P.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., P. P.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
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Abarema clypearia (Jack) Kosterm., p.p.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., p.p.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
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Abarema clypearia (Jack) Kosterm., p. p.|{"scientificName":{"parsed":true, "verbatim":"Abarema clypearia (Jack) Kosterm., p. p.", "normalized":"Abarema clypearia (Jack) Kosterm.", "canonical":"Abarema clypearia", "hybrid":false, "details":[{"genus":{"string":"Abarema"}, "species":{"string":"clypearia", "authorship":"(Jack) Kosterm.", "combinationAuthorTeam":{"authorTeam":"Kosterm.", "author":["Kosterm."]}, "basionymAuthorTeam":{"authorTeam":"Jack", "author":["Jack"]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 7], "8":["species", 17], "19":["author_word", 23], "25":["author_word", 33]}}}
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-
Indigofera phyllogramme var. aphylla R.Vig., p.p.B|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Indigofera phyllogramme var. aphylla R.Vig., p.p.B", "normalized":"Indigofera phyllogramme var. aphylla R.Vig.", "canonical":"Indigofera phyllogramme aphylla", "hybrid":false, "details":[{"genus":{"string":"Indigofera"}, "species":{"string":"phyllogramme"}, "infraspecies":[{"string":"aphylla", "rank":"var.", "authorship":"R.Vig.", "basionymAuthorTeam":{"authorTeam":"R.Vig.", "author":["R.Vig."]}}]}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["author_word", 43]}}}
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315
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+
Indigofera phyllogramme var. aphylla R.Vig., p.p.B|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Indigofera phyllogramme var. aphylla R.Vig., p.p.B", "normalized":"Indigofera phyllogramme var. aphylla R.Vig.", "canonical":"Indigofera phyllogramme aphylla", "hybrid":false, "details":[{"genus":{"string":"Indigofera"}, "species":{"string":"phyllogramme"}, "infraspecies":[{"string":"aphylla", "rank":"var.", "authorship":"R.Vig.", "basionymAuthorTeam":{"authorTeam":"R.Vig.", "author":["R.Vig."]}}]}], "parser_run":2, "positions":{"0":["genus", 10], "11":["species", 23], "24":["infraspecific_type", 28], "29":["infraspecies", 36], "37":["author_word", 43]}}}
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245
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246
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-
#removing nomenclatural
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317
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+
#removing nomenclatural annotations
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318
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+
Amphiprora pseudoduplex (Osada & Kobayasi, 1990) comb. nov.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amphiprora pseudoduplex (Osada & Kobayasi, 1990) comb. nov.", "normalized":"Amphiprora pseudoduplex (Osada & Kobayasi 1990)", "canonical":"Amphiprora pseudoduplex", "hybrid":false, "details":[{"genus":{"string":"Amphiprora"}, "species":{"string":"pseudoduplex", "authorship":"(Osada & Kobayasi, 1990)", "basionymAuthorTeam":{"authorTeam":"Osada & Kobayasi", "author":["Osada", "Kobayasi"], "year":"1990"}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 23], "25":["author_word", 30], "33":["author_word", 41], "43":["year", 47]}}}
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247
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Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.|{"scientificName":{"parsed":true, "verbatim":"Arthopyrenia hyalospora (Nyl.) R.C. Harris comb. nov.", "normalized":"Arthopyrenia hyalospora (Nyl.) R.C. Harris", "canonical":"Arthopyrenia hyalospora", "hybrid":false, "details":[{"genus":{"string":"Arthopyrenia"}, "species":{"string":"hyalospora", "authorship":"(Nyl.) R.C. Harris", "combinationAuthorTeam":{"authorTeam":"R.C. Harris", "author":["R.C. Harris"]}, "basionymAuthorTeam":{"authorTeam":"Nyl.", "author":["Nyl."]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 23], "25":["author_word", 29], "31":["author_word", 35], "36":["author_word", 42]}}}
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248
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-
Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)|{"scientificName":{"parsed":true, "verbatim":"Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)", "normalized":"Acanthophis lancasteri
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249
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-
Acontias lineatus WAGLER 1830: 196 (nomen nudum)|{"scientificName":{"parsed":true, "verbatim":"Acontias lineatus WAGLER 1830: 196 (nomen nudum)", "normalized":"Acontias lineatus
|
320
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+
Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acanthophis lancasteri WELLS & WELLINGTON (nomen nudum)", "normalized":"Acanthophis lancasteri Wells & Wellington", "canonical":"Acanthophis lancasteri", "hybrid":false, "details":[{"genus":{"string":"Acanthophis"}, "species":{"string":"lancasteri", "authorship":"WELLS & WELLINGTON", "basionymAuthorTeam":{"authorTeam":"WELLS & WELLINGTON", "author":["Wells", "Wellington"]}}}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 22], "23":["author_word", 28], "31":["author_word", 41]}}}
|
321
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+
Acontias lineatus WAGLER 1830: 196 (nomen nudum)|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Acontias lineatus WAGLER 1830: 196 (nomen nudum)", "normalized":"Acontias lineatus Wagler 1830", "canonical":"Acontias lineatus", "hybrid":false, "details":[{"genus":{"string":"Acontias"}, "species":{"string":"lineatus", "authorship":"WAGLER 1830: 196", "basionymAuthorTeam":{"authorTeam":"WAGLER", "author":["Wagler"], "year":"1830"}}}], "parser_run":2, "positions":{"0":["genus", 8], "9":["species", 17], "18":["author_word", 24], "25":["year", 29]}}}
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250
322
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Akeratidae Nomen Nudum|{"scientificName":{"parsed":true, "verbatim":"Akeratidae Nomen Nudum", "normalized":"Akeratidae", "canonical":"Akeratidae", "hybrid":false, "details":[{"uninomial":{"string":"Akeratidae"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["uninomial", 10]}}}
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251
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Aster exilis Ell., nomen dubium|{"scientificName":{"parsed":true, "verbatim":"Aster exilis Ell., nomen dubium", "normalized":"Aster exilis Ell.", "canonical":"Aster exilis", "hybrid":false, "details":[{"genus":{"string":"Aster"}, "species":{"string":"exilis", "authorship":"Ell.", "basionymAuthorTeam":{"authorTeam":"Ell.", "author":["Ell."]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 12], "13":["author_word", 17]}}}
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252
324
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Abutilon avicennae Gaertn., nom. illeg.|{"scientificName":{"parsed":true, "verbatim":"Abutilon avicennae Gaertn., nom. illeg.", "normalized":"Abutilon avicennae Gaertn.", "canonical":"Abutilon avicennae", "hybrid":false, "details":[{"genus":{"string":"Abutilon"}, "species":{"string":"avicennae", "authorship":"Gaertn.", "basionymAuthorTeam":{"authorTeam":"Gaertn.", "author":["Gaertn."]}}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["author_word", 26]}}}
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@@ -277,14 +349,19 @@ Fakus prioni|{"scientificName":{"parsed":true, "verbatim":"Fakus prioni", "norma
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Phi h-like viruses|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Phi h-like viruses", "virus":true}}
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278
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Viroids|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Viroids", "virus":true}}
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279
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Fungal prions|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Fungal prions", "virus":true}}
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352
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+
Human rhinovirus A11|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Human rhinovirus A11", "virus":true}}
|
353
|
+
Kobuvirus korean black goat/South Korea/2010|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Kobuvirus korean black goat/South Korea/2010", "virus":true}}
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354
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+
Australian bat lyssavirus human/AUS/1998|{"scientificName":{"parsed":false, "parser_version":"test_version", "verbatim":"Australian bat lyssavirus human/AUS/1998", "virus":true}}
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280
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#double parenthesis
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282
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Eichornia crassipes ( (Martius) ) Solms-Laub.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Eichornia crassipes ( (Martius) ) Solms-Laub.","normalized":"Eichornia crassipes (Martius) Solms-Laub.","canonical":"Eichornia crassipes","hybrid":false,"details":[{"genus":{"string":"Eichornia"},"species":{"string":"crassipes","authorship":"( (Martius) ) Solms-Laub.","combinationAuthorTeam":{"authorTeam":"Solms-Laub.","author":["Solms-Laub."]},"basionymAuthorTeam":{"authorTeam":"Martius","author":["Martius"]}}}],"positions":{"0":["genus",9],"10":["species",19],"23":["author_word",30],"34":["author_word",45]}}}
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283
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284
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#year without authorship
|
285
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Acarospora cratericola 1929|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Acarospora cratericola 1929","normalized":"Acarospora cratericola 1929","canonical":"Acarospora cratericola","hybrid":false,"details":[{"genus":{"string":"Acarospora"},"species":{"string":"cratericola","year":"1929"}}],"positions":{"0":["genus",10],"11":["species",22],"23":["year",27]}}}
|
361
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+
Goggia gemmula 1996|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Goggia gemmula 1996", "normalized":"Goggia gemmula 1996", "canonical":"Goggia gemmula", "hybrid":false, "details":[{"genus":{"string":"Goggia"}, "species":{"string":"gemmula", "year":"1996"}}], "parser_run":2, "positions":{"0":["genus", 6], "7":["species", 14], "15":["year", 19]}}}
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286
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287
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#authorship with filius (son of)
|
364
|
+
Oxytropis minjanensis Rech. f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Oxytropis minjanensis Rech. f.", "normalized":"Oxytropis minjanensis Rech. f.", "canonical":"Oxytropis minjanensis", "hybrid":false, "details":[{"genus":{"string":"Oxytropis"}, "species":{"string":"minjanensis", "authorship":"Rech. f.", "basionymAuthorTeam":{"authorTeam":"Rech. f.", "author":["Rech. f."]}}}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 21], "22":["author_word", 27], "28":["author_word", 30]}}}
|
288
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|
Platypus bicaudatulus Schedl f. 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl f. 1935", "normalized":"Platypus bicaudatulus Schedl f. 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl f. 1935", "basionymAuthorTeam":{"authorTeam":"Schedl f.", "author":["Schedl f."], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 31], "32":["year", 36]}}}
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289
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Platypus bicaudatulus Schedl filius 1935|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Platypus bicaudatulus Schedl filius 1935", "normalized":"Platypus bicaudatulus Schedl filius 1935", "canonical":"Platypus bicaudatulus", "hybrid":false, "details":[{"genus":{"string":"Platypus"}, "species":{"string":"bicaudatulus", "authorship":"Schedl filius 1935", "basionymAuthorTeam":{"authorTeam":"Schedl filius", "author":["Schedl filius"], "year":"1935"}}}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 21], "22":["author_word", 28], "29":["author_word", 35], "36":["year", 40]}}}
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290
367
|
Fimbristylis ovata (Burm. f.) J. Kern|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Fimbristylis ovata (Burm. f.) J. Kern", "normalized":"Fimbristylis ovata (Burm. f.) J. Kern", "canonical":"Fimbristylis ovata", "hybrid":false, "details":[{"genus":{"string":"Fimbristylis"}, "species":{"string":"ovata", "authorship":"(Burm. f.) J. Kern", "combinationAuthorTeam":{"authorTeam":"J. Kern", "author":["J. Kern"]}, "basionymAuthorTeam":{"authorTeam":"Burm. f.", "author":["Burm. f."]}}}], "parser_run":1, "positions":{"0":["genus", 12], "13":["species", 18], "20":["author_word", 25], "26":["author_word", 28], "30":["author_word", 32], "33":["author_word", 37]}}}
|
@@ -294,14 +371,15 @@ Cerastium arvense var. fuegianum Hook. f.|{"scientificName":{"parsed":true, "par
|
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294
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Cerastium arvense var. fuegianum Hook.f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cerastium arvense var. fuegianum Hook.f.", "normalized":"Cerastium arvense var. fuegianum Hook.f.", "canonical":"Cerastium arvense fuegianum", "hybrid":false, "details":[{"genus":{"string":"Cerastium"}, "species":{"string":"arvense"}, "infraspecies":[{"string":"fuegianum", "rank":"var.", "authorship":"Hook.f.", "basionymAuthorTeam":{"authorTeam":"Hook.f.", "author":["Hook.f."]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["infraspecific_type", 22], "23":["infraspecies", 32], "33":["author_word", 40]}}}
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295
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Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.", "normalized":"Cerastium arvense ssp. velutinum var. velutinum (Raf.) Britton f.", "canonical":"Cerastium arvense velutinum velutinum", "hybrid":false, "details":[{"genus":{"string":"Cerastium"}, "species":{"string":"arvense"}, "infraspecies":[{"string":"velutinum", "rank":"ssp."}, {"string":"velutinum", "rank":"var.", "authorship":"(Raf.) Britton f.", "combinationAuthorTeam":{"authorTeam":"Britton f.", "author":["Britton f."]}, "basionymAuthorTeam":{"authorTeam":"Raf.", "author":["Raf."]}}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 17], "18":["infraspecific_type", 22], "23":["infraspecies", 32], "33":["infraspecific_type", 37], "38":["infraspecies", 47], "49":["author_word", 53], "55":["author_word", 62], "63":["author_word", 65]}}}
|
296
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|
Amelanchier arborea f. hirsuta (Michx. f.) Fernald|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Amelanchier arborea f. hirsuta (Michx. f.) Fernald", "normalized":"Amelanchier arborea f. hirsuta (Michx. f.) Fernald", "canonical":"Amelanchier arborea hirsuta", "hybrid":false, "details":[{"genus":{"string":"Amelanchier"}, "species":{"string":"arborea"}, "infraspecies":[{"string":"hirsuta", "rank":"f.", "authorship":"(Michx. f.) Fernald", "combinationAuthorTeam":{"authorTeam":"Fernald", "author":["Fernald"]}, "basionymAuthorTeam":{"authorTeam":"Michx. f.", "author":["Michx. f."]}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 19], "20":["infraspecific_type", 22], "23":["infraspecies", 30], "32":["author_word", 38], "39":["author_word", 41], "43":["author_word", 50]}}}
|
297
|
-
Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", "normalized":"Betula pendula
|
374
|
+
Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", "normalized":"Betula pendula fo. dalecarlica (L. f.) C.K. Schneid.", "canonical":"Betula pendula dalecarlica", "hybrid":false, "details":[{"genus":{"string":"Betula"}, "species":{"string":"pendula"}, "infraspecies":[{"string":"dalecarlica", "rank":"fo.", "authorship":"(L. f.) C.K. Schneid.", "combinationAuthorTeam":{"authorTeam":"C.K. Schneid.", "author":["C.K. Schneid."]}, "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}]}], "parser_run":1, "positions":{"0":["genus", 6], "7":["species", 14], "15":["infraspecific_type", 18], "19":["infraspecies", 30], "32":["author_word", 34], "35":["author_word", 37], "39":["author_word", 43], "44":["author_word", 52]}}}
|
298
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|
Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.", "normalized":"Racomitrium canescens f. ericoides (F. Weber ex Brid.) Mönk.", "canonical":"Racomitrium canescens ericoides", "hybrid":false, "details":[{"genus":{"string":"Racomitrium"}, "species":{"string":"canescens"}, "infraspecies":[{"string":"ericoides", "rank":"f.", "authorship":"(F. Weber ex Brid.) Mönk.", "combinationAuthorTeam":{"authorTeam":"Mönk.", "author":["Mönk."]}, "basionymAuthorTeam":{"authorTeam":"F. Weber", "author":["F. Weber"], "exAuthorTeam":{"authorTeam":"Brid.", "author":["Brid."]}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 21], "22":["infraspecific_type", 24], "25":["infraspecies", 34], "36":["author_word", 38], "39":["author_word", 44], "48":["author_word", 53], "55":["author_word", 60]}}}
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299
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-
Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", "normalized":"Racomitrium canescens
|
376
|
+
Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", "normalized":"Racomitrium canescens forma ericoides (F. Weber ex Brid.) Mönk.", "canonical":"Racomitrium canescens ericoides", "hybrid":false, "details":[{"genus":{"string":"Racomitrium"}, "species":{"string":"canescens"}, "infraspecies":[{"string":"ericoides", "rank":"forma", "authorship":"(F. Weber ex Brid.) Mönk.", "combinationAuthorTeam":{"authorTeam":"Mönk.", "author":["Mönk."]}, "basionymAuthorTeam":{"authorTeam":"F. Weber", "author":["F. Weber"], "exAuthorTeam":{"authorTeam":"Brid.", "author":["Brid."]}}}]}], "parser_run":1, "positions":{"0":["genus", 11], "12":["species", 21], "22":["infraspecific_type", 27], "28":["infraspecies", 37], "39":["author_word", 41], "42":["author_word", 47], "51":["author_word", 56], "58":["author_word", 63]}}}
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300
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|
Polypodium pectinatum L. f., Rosenst.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f., Rosenst.", "normalized":"Polypodium pectinatum L. f., Rosenst.", "canonical":"Polypodium pectinatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L. f., Rosenst.", "basionymAuthorTeam":{"authorTeam":"L. f., Rosenst.", "author":["L. f.", "Rosenst."]}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["author_word", 27], "29":["author_word", 37]}}}
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301
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|
Polypodium pectinatum L. f.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum L. f.", "normalized":"Polypodium pectinatum L. f.", "canonical":"Polypodium pectinatum", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"L. f.", "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "22":["author_word", 24], "25":["author_word", 27]}}}
|
302
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|
Polypodium pectinatum (L. f.) typica Rosent|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Polypodium pectinatum (L. f.) typica Rosent", "normalized":"Polypodium pectinatum (L. f.) typica Rosent", "canonical":"Polypodium pectinatum typica", "hybrid":false, "details":[{"genus":{"string":"Polypodium"}, "species":{"string":"pectinatum", "authorship":"(L. f.)", "basionymAuthorTeam":{"authorTeam":"L. f.", "author":["L. f."]}}, "infraspecies":[{"string":"typica", "rank":"n/a", "authorship":"Rosent", "basionymAuthorTeam":{"authorTeam":"Rosent", "author":["Rosent"]}}]}], "parser_run":1, "positions":{"0":["genus", 10], "11":["species", 21], "23":["author_word", 25], "26":["author_word", 28], "30":["infraspecies", 36], "37":["author_word", 43]}}}
|
303
380
|
|
304
381
|
#year range
|
382
|
+
Eurodryas orientalis Herrich-Schäffer 1845-1847|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Eurodryas orientalis Herrich-Schäffer 1845-1847", "normalized":"Eurodryas orientalis Herrich-Schäffer 1845-1847", "canonical":"Eurodryas orientalis", "hybrid":false, "details":[{"genus":{"string":"Eurodryas"}, "species":{"string":"orientalis", "authorship":"Herrich-Schäffer 1845-1847", "basionymAuthorTeam":{"authorTeam":"Herrich-Schäffer", "author":["Herrich-Schäffer"], "year":"1845-1847"}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 20], "21":["author_word", 37], "38":["year", 47]}}}
|
305
383
|
Tridentella tangeroae Bruce, 1987-92|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Tridentella tangeroae Bruce, 1987-92","normalized":"Tridentella tangeroae Bruce 1987-92","canonical":"Tridentella tangeroae","hybrid":false,"details":[{"genus":{"string":"Tridentella"},"species":{"string":"tangeroae","authorship":"Bruce, 1987-92","basionymAuthorTeam":{"authorTeam":"Bruce","author":["Bruce"],"year":"1987-92"}}}],"positions":{"0":["genus",11],"12":["species",21],"22":["author_word",27],"29":["year",36]}}}
|
306
384
|
|
307
385
|
#year in square brackets
|
@@ -319,7 +397,20 @@ Morea (Morea) Burt 2342343242 23424322342 23424234|{"scientificName":{"parsed":t
|
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319
397
|
Nautilus asterizans von|{"scientificName":{"parsed":true, "verbatim":"Nautilus asterizans von", "normalized":"Nautilus asterizans", "canonical":"Nautilus asterizans", "hybrid":false, "details":[{"genus":{"string":"Nautilus"}, "species":{"string":"asterizans"}}], "parser_version":"test_version", "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 19]}}}
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320
398
|
|
321
399
|
#salvage canonical
|
322
|
-
Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true, "parser_version":"test_version", "
|
400
|
+
Morea ssjjlajajaj324$33 234243242|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Morea ssjjlajajaj324$33 234243242", "normalized":"Morea", "canonical":"Morea", "hybrid":false, "details":[{"uninomial":{"string":"Morea"}}], "parser_run":2, "positions":{"0":["uninomial", 5]}}}
|
323
401
|
Morea (Morea) burtius 2342343242 23424322342 23424234|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Morea (Morea) burtius 2342343242 23424322342 23424234","normalized":"Morea (Morea) burtius","canonical":"Morea burtius","hybrid":false,"details":[{"genus":{"string":"Morea"},"infragenus":{"string":"Morea"},"species":{"string":"burtius"}}],"positions":{"0":["genus",5],"7":["infragenus",12],"14":["species",21]}}}
|
324
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|
Verpericola megasoma ""Dall" Pils.|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Verpericola megasoma \"\"Dall\" Pils.","normalized":"Verpericola megasoma","canonical":"Verpericola megasoma","hybrid":false,"details":[{"genus":{"string":"Verpericola"},"species":{"string":"megasoma"}}],"positions":{"0":["genus",11],"12":["species",20]}}}
|
403
|
+
Verpericola megasoma "Dall" Pils.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Verpericola megasoma \"Dall\" Pils.", "normalized":"Verpericola megasoma", "canonical":"Verpericola megasoma", "hybrid":false, "details":[{"genus":{"string":"Verpericola"}, "species":{"string":"megasoma"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 20]}}}
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325
404
|
Moraea spathulata ( (L. f. Klatt|{"scientificName":{"parsed":true, "parser_version":"test_version", "parser_run":2,"verbatim":"Moraea spathulata ( (L. f. Klatt","normalized":"Moraea spathulata","canonical":"Moraea spathulata","hybrid":false,"details":[{"genus":{"string":"Moraea"},"species":{"string":"spathulata"}}],"positions":{"0":["genus",6],"7":["species",17]}}}
|
405
|
+
Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Stewartia micrantha (Chun) Sealy, Bot. Mag. 176: t. 510. 1967.", "normalized":"Stewartia micrantha (Chun) Sealy, Bot. Mag.", "canonical":"Stewartia micrantha", "hybrid":false, "details":[{"genus":{"string":"Stewartia"}, "species":{"string":"micrantha", "authorship":"(Chun) Sealy, Bot. Mag.", "combinationAuthorTeam":{"authorTeam":"Sealy, Bot. Mag.", "author":["Sealy", "Bot. Mag."]}, "basionymAuthorTeam":{"authorTeam":"Chun", "author":["Chun"]}}}], "parser_run":2, "positions":{"0":["genus", 9], "10":["species", 19], "21":["author_word", 25], "27":["author_word", 32], "34":["author_word", 38], "39":["author_word", 43]}}}
|
406
|
+
Pyrobaculum neutrophilum V24Sta|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Pyrobaculum neutrophilum V24Sta", "normalized":"Pyrobaculum neutrophilum", "canonical":"Pyrobaculum neutrophilum", "hybrid":false, "details":[{"genus":{"string":"Pyrobaculum"}, "species":{"string":"neutrophilum"}}], "parser_run":2, "positions":{"0":["genus", 11], "12":["species", 24]}}}
|
407
|
+
Rana aurora Baird and Girard, 1852; H.B. Shaffer et al., 2004|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Rana aurora Baird and Girard, 1852; H.B. Shaffer et al., 2004", "normalized":"Rana aurora Baird & Girard", "canonical":"Rana aurora", "hybrid":false, "details":[{"genus":{"string":"Rana"}, "species":{"string":"aurora", "authorship":"Baird and Girard", "basionymAuthorTeam":{"authorTeam":"Baird and Girard", "author":["Baird", "Girard"]}}}], "parser_run":2, "positions":{"0":["genus", 4], "5":["species", 11], "12":["author_word", 17], "22":["author_word", 28]}}}
|
408
|
+
Agropyron pectiniforme var. karabaljikji ined.?|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Agropyron pectiniforme var. karabaljikji ined.?", "normalized":"Agropyron pectiniforme var. karabaljikji", "canonical":"Agropyron pectiniforme karabaljikji", "hybrid":false, "details":[{"genus":{"string":"Agropyron"}, "species":{"string":"pectiniforme"}, "infraspecies":[{"string":"karabaljikji", "rank":"var."}]}], "parser_run":1, "positions":{"0":["genus", 9], "10":["species", 22], "23":["infraspecific_type", 27], "28":["infraspecies", 40]}}}
|
409
|
+
Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Staphylococcus hyicus chromogenes Devriese et al. 1978 (Approved Lists 1980).", "normalized":"Staphylococcus hyicus chromogenes Devriese et al. 1978", "canonical":"Staphylococcus hyicus chromogenes", "hybrid":false, "details":[{"genus":{"string":"Staphylococcus"}, "species":{"string":"hyicus"}, "infraspecies":[{"string":"chromogenes", "rank":"n/a", "authorship":"Devriese et al. 1978", "basionymAuthorTeam":{"authorTeam":"Devriese et al.", "author":["Devriese et al."], "year":"1978"}}]}], "parser_run":2, "positions":{"0":["genus", 14], "15":["species", 21], "22":["infraspecies", 33], "34":["author_word", 42], "43":["author_word", 49], "50":["year", 54]}}}
|
410
|
+
Kerana var. cameroni|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Kerana var. cameroni", "normalized":"Kerana", "canonical":"Kerana", "hybrid":false, "details":[{"uninomial":{"string":"Kerana"}}], "parser_run":2, "positions":{"0":["uninomial", 6]}}}
|
411
|
+
|
412
|
+
#should parse names which previously caused prolems:
|
413
|
+
Buteo borealis ? ventralis|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Buteo borealis ? ventralis", "normalized":"Buteo borealis", "canonical":"Buteo borealis", "hybrid":false, "details":[{"genus":{"string":"Buteo"}, "species":{"string":"borealis"}, "infraspecies":[{"annotation_identification":"?", "ignored":{"infraspecies":{"string":"ventralis", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 14], "15":["annotation_identification", 17]}}}
|
414
|
+
Cetraria islandica ? islandica|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Cetraria islandica ? islandica", "normalized":"Cetraria islandica", "canonical":"Cetraria islandica", "hybrid":false, "details":[{"genus":{"string":"Cetraria"}, "species":{"string":"islandica"}, "infraspecies":[{"annotation_identification":"?", "ignored":{"infraspecies":{"string":"islandica", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 8], "9":["species", 18], "19":["annotation_identification", 21]}}}
|
415
|
+
Euxoa nr. idahoensis sp. 1clay|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Euxoa nr. idahoensis sp. 1clay", "normalized":"Euxoa idahoensis", "canonical":"Euxoa idahoensis", "hybrid":false, "details":[{"genus":{"string":"Euxoa"}, "species":{"string":"idahoensis"}, "infraspecies":[{"annotation_identification":"sp.", "ignored":{"infraspecies":{"string":"uniclay", "rank":"n/a"}}}]}], "parser_run":1, "positions":{"0":["genus", 5], "10":["species", 20], "21":["annotation_identification", 24]}}}
|
416
|
+
Parus caeruleus species complex|{"scientificName":{"parsed":true, "parser_version":"test_version", "verbatim":"Parus caeruleus species complex", "normalized":"Parus caeruleus", "canonical":"Parus caeruleus", "hybrid":false, "details":[{"genus":{"string":"Parus"}, "species":{"string":"caeruleus"}}], "parser_run":1, "positions":{"0":["genus", 5], "6":["species", 15]}}}
|