bio 2.0.3 → 2.0.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.github/workflows/ruby.yml +38 -0
- data/.gitignore +32 -0
- data/ChangeLog +366 -0
- data/Gemfile +3 -0
- data/LEGAL +11 -0
- data/README.rdoc +1 -1
- data/RELEASE_NOTES.rdoc +50 -0
- data/appveyor.yml +14 -13
- data/bioruby.gemspec +9 -10
- data/lib/bio/appl/blast/genomenet.rb +2 -1
- data/lib/bio/appl/pts1.rb +1 -1
- data/lib/bio/db/embl/uniprotkb.rb +184 -26
- data/lib/bio/version.rb +1 -1
- data/test/data/uniprot/P03589.uniprot +127 -0
- data/test/data/uniprot/P28907.uniprot +551 -0
- data/test/data/uniprot/P49144.uniprot +232 -0
- data/test/functional/bio/test_command.rb +2 -0
- data/test/network/bio/db/kegg/test_genes_hsa7422.rb +26 -12
- data/test/unit/bio/db/embl/test_uniprotkb_P03589.rb +378 -0
- data/test/unit/bio/db/embl/test_uniprotkb_P28907.rb +325 -0
- data/test/unit/bio/db/embl/test_uniprotkb_P49144.rb +359 -0
- metadata +14 -15
- data/.travis.yml +0 -71
- data/gemfiles/Gemfile.travis-jruby1.8 +0 -6
- data/gemfiles/Gemfile.travis-jruby1.9 +0 -5
- data/gemfiles/Gemfile.travis-rbx +0 -10
- data/gemfiles/Gemfile.travis-ruby1.8 +0 -6
- data/gemfiles/Gemfile.travis-ruby1.9 +0 -5
- data/gemfiles/Gemfile.windows +0 -6
- data/gemfiles/modify-Gemfile.rb +0 -28
- data/gemfiles/prepare-gemspec.rb +0 -29
@@ -0,0 +1,551 @@
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ID CD38_HUMAN Reviewed; 300 AA.
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AC P28907; O00121; O00122; Q96HY4;
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DT 01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
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DT 23-NOV-2004, sequence version 2.
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DT 03-AUG-2022, entry version 213.
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DE RecName: Full=ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1;
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DE EC=3.2.2.6;
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DE AltName: Full=2'-phospho-ADP-ribosyl cyclase;
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DE AltName: Full=2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferase;
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DE EC=2.4.99.20;
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DE AltName: Full=2'-phospho-cyclic-ADP-ribose transferase;
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DE AltName: Full=ADP-ribosyl cyclase 1;
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DE Short=ADPRC 1;
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DE AltName: Full=Cyclic ADP-ribose hydrolase 1;
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DE Short=cADPr hydrolase 1;
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DE AltName: Full=T10;
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DE AltName: CD_antigen=CD38;
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GN Name=CD38;
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OS Homo sapiens (Human).
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OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
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OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
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OC Homo.
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OX NCBI_TaxID=9606;
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RN [1]
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RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
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RX PubMed=2319135;
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RA Jackson D.G., Bell J.I.;
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RT "Isolation of a cDNA encoding the human CD38 (T10) molecule, a cell surface
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RT glycoprotein with an unusual discontinuous pattern of expression during
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RT lymphocyte differentiation.";
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RL J. Immunol. 144:2811-2815(1990).
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RN [2]
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RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1
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RP AND 2), AND TISSUE SPECIFICITY.
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RC TISSUE=Esophageal carcinoma, and Pancreas;
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RX PubMed=9074508; DOI=10.1016/s0378-1119(96)00723-8;
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RA Nata K., Takamura T., Karasawa T., Kumagai T., Hashioka W., Tohgo A.,
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RA Yonekura H., Takasawa S., Nakamura S., Okamoto H.;
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RT "Human gene encoding CD38 (ADP-ribosyl cyclase/cyclic ADP-ribose
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RT hydrolase): organization, nucleotide sequence and alternative splicing.";
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RL Gene 186:285-292(1997).
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RN [3]
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RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
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RC TISSUE=B-cell;
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RX PubMed=15489334; DOI=10.1101/gr.2596504;
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RG The MGC Project Team;
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RT "The status, quality, and expansion of the NIH full-length cDNA project:
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RT the Mammalian Gene Collection (MGC).";
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RL Genome Res. 14:2121-2127(2004).
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RN [4]
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RP SIMILARITY TO NADASE.
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RX PubMed=1471258; DOI=10.1016/0968-0004(92)90337-9;
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RA States D.J., Walseth T.F., Lee H.C.;
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RT "Similarities in amino acid sequences of Aplysia ADP-ribosyl cyclase and
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RT human lymphocyte antigen CD38.";
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RL Trends Biochem. Sci. 17:495-495(1992).
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RN [5]
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RP CHARACTERIZATION.
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RX PubMed=8253715; DOI=10.1016/s0021-9258(19)74275-6;
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RA Takasawa S., Tohgo A., Noguchi N., Koguma T., Nata K., Sugimoto T.,
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RA Yonekura H., Okamoto H.;
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RT "Synthesis and hydrolysis of cyclic ADP-ribose by human leukocyte antigen
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RT CD38 and inhibition of the hydrolysis by ATP.";
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RL J. Biol. Chem. 268:26052-26054(1993).
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RN [6]
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RP ACTIVE SITE, AND MUTAGENESIS OF CYS-119; CYS-160; CYS-173 AND CYS-201.
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RX PubMed=7961800; DOI=10.1016/s0021-9258(19)61940-x;
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RA Tohgo A., Takasawa S., Noguchi N., Koguma T., Nata K., Sugimoto T.,
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RA Furuya Y., Yonekura H., Okamoto H.;
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RT "Essential cysteine residues for cyclic ADP-ribose synthesis and hydrolysis
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RT by CD38.";
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RL J. Biol. Chem. 269:28555-28557(1994).
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RN [7]
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RP SPLICE ISOFORM(S) THAT ARE POTENTIAL NMD TARGET(S).
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RX PubMed=14759258; DOI=10.1186/gb-2004-5-2-r8;
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RA Hillman R.T., Green R.E., Brenner S.E.;
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RT "An unappreciated role for RNA surveillance.";
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RL Genome Biol. 5:R8.1-R8.16(2004).
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RN [8]
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RP CATALYTIC ACTIVITY.
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RX PubMed=16690024; DOI=10.1016/j.bbrc.2006.04.096;
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RA Moreschi I., Bruzzone S., Melone L., De Flora A., Zocchi E.;
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RT "NAADP+ synthesis from cADPRP and nicotinic acid by ADP-ribosyl cyclases.";
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RL Biochem. Biophys. Res. Commun. 345:573-580(2006).
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RN [9]
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RP GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-100; ASN-209 AND ASN-219.
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RC TISSUE=Liver;
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RX PubMed=19159218; DOI=10.1021/pr8008012;
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RA Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H.;
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RT "Glycoproteomics analysis of human liver tissue by combination of multiple
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RT enzyme digestion and hydrazide chemistry.";
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RL J. Proteome Res. 8:651-661(2009).
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RN [10]
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RP GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-219.
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RC TISSUE=Leukemic T-cell;
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RX PubMed=19349973; DOI=10.1038/nbt.1532;
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RA Wollscheid B., Bausch-Fluck D., Henderson C., O'Brien R., Bibel M.,
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RA Schiess R., Aebersold R., Watts J.D.;
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RT "Mass-spectrometric identification and relative quantification of N-linked
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RT cell surface glycoproteins.";
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RL Nat. Biotechnol. 27:378-386(2009).
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RN [11]
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RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
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RX PubMed=21269460; DOI=10.1186/1752-0509-5-17;
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RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
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RA Bennett K.L., Superti-Furga G., Colinge J.;
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RT "Initial characterization of the human central proteome.";
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RL BMC Syst. Biol. 5:17-17(2011).
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RN [12]
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RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
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RX PubMed=25944712; DOI=10.1002/pmic.201400617;
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RA Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M., Ayoub D.,
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RA Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
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RT "N-terminome analysis of the human mitochondrial proteome.";
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RL Proteomics 15:2519-2524(2015).
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RN [13]
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RP X-RAY CRYSTALLOGRAPHY (1.91 ANGSTROMS) OF 45-300, AND DISULFIDE BONDS.
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RX PubMed=16154090; DOI=10.1016/j.str.2005.05.012;
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RA Liu Q., Kriksunov I.A., Graeff R., Munshi C., Lee H.C., Hao Q.;
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RT "Crystal structure of human CD38 extracellular domain.";
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RL Structure 13:1331-1339(2005).
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RN [14]
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RP VARIANT TRP-140.
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RX PubMed=9754820; DOI=10.1007/s001250051026;
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RA Yagui K., Shimada F., Mimura M., Hashimoto N., Suzuki Y., Tokuyama Y.,
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RA Nata K., Tohgo A., Ikehata F., Takasawa S., Okamoto H., Makino H.,
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RA Saito Y., Kanatsuka A.;
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RT "A missense mutation in the CD38 gene, a novel factor for insulin
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RT secretion: association with Type II diabetes mellitus in Japanese subjects
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RT and evidence of abnormal function when expressed in vitro.";
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RL Diabetologia 41:1024-1028(1998).
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CC -!- FUNCTION: Synthesizes the second messengers cyclic ADP-ribose and
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CC nicotinate-adenine dinucleotide phosphate, the former a second
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CC messenger for glucose-induced insulin secretion. Also has cADPr
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CC hydrolase activity. Also moonlights as a receptor in cells of the
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CC immune system.
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CC -!- CATALYTIC ACTIVITY:
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CC Reaction=H2O + NAD(+) = ADP-D-ribose + H(+) + nicotinamide;
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CC Xref=Rhea:RHEA:16301, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
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CC ChEBI:CHEBI:17154, ChEBI:CHEBI:57540, ChEBI:CHEBI:57967; EC=3.2.2.6;
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CC Evidence={ECO:0000269|PubMed:16690024};
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CC -!- CATALYTIC ACTIVITY:
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CC Reaction=NADP(+) + nicotinate = nicotinamide + nicotinate-adenine
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CC dinucleotide phosphate; Xref=Rhea:RHEA:38599, ChEBI:CHEBI:17154,
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CC ChEBI:CHEBI:32544, ChEBI:CHEBI:58349, ChEBI:CHEBI:75967;
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CC EC=2.4.99.20; Evidence={ECO:0000269|PubMed:16690024};
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CC -!- ACTIVITY REGULATION: ATP inhibits the hydrolyzing activity.
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CC -!- SUBCELLULAR LOCATION: Membrane; Single-pass type II membrane protein.
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CC -!- ALTERNATIVE PRODUCTS:
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CC Event=Alternative splicing; Named isoforms=2;
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CC Name=1;
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CC IsoId=P28907-1; Sequence=Displayed;
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CC Name=2;
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CC IsoId=P28907-2; Sequence=VSP_000707, VSP_000708;
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CC -!- TISSUE SPECIFICITY: Expressed at high levels in pancreas, liver,
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CC kidney, brain, testis, ovary, placenta, malignant lymphoma and
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CC neuroblastoma. {ECO:0000269|PubMed:9074508}.
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CC -!- DEVELOPMENTAL STAGE: Preferentially expressed at both early and late
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CC stages of the B and T-cell maturation. It is also detected on erythroid
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CC and myeloid progenitors in bone marrow, where the level of surface
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CC expression was shown to decrease during differentiation of blast-
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CC forming unit E to colony-forming unit E.
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CC -!- MISCELLANEOUS: [Isoform 2]: May be produced at very low levels due to a
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CC premature stop codon in the mRNA, leading to nonsense-mediated mRNA
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CC decay. {ECO:0000305}.
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CC -!- SIMILARITY: Belongs to the ADP-ribosyl cyclase family. {ECO:0000305}.
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CC -!- WEB RESOURCE: Name=Wikipedia; Note=CD38 entry;
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CC URL="https://en.wikipedia.org/wiki/CD38";
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CC -!- WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and
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CC Haematology;
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CC URL="http://atlasgeneticsoncology.org/Genes/CD38ID978ch4p15.html";
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CC ---------------------------------------------------------------------------
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CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
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CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
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CC ---------------------------------------------------------------------------
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DR EMBL; M34461; AAA68482.1; -; mRNA.
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DR EMBL; D84276; BAA18964.1; -; mRNA.
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DR EMBL; D84277; BAA18965.1; -; mRNA.
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DR EMBL; D84284; BAA18966.1; -; Genomic_DNA.
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DR EMBL; BC007964; AAH07964.1; -; mRNA.
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DR CCDS; CCDS3417.1; -. [P28907-1]
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DR PIR; A43521; A43521.
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DR RefSeq; NP_001766.2; NM_001775.3. [P28907-1]
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DR PDB; 1YH3; X-ray; 1.91 A; A/B=45-300.
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DR PDB; 1ZVM; X-ray; 2.20 A; A/B/C/D=45-300.
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DR PDB; 2EF1; X-ray; 2.40 A; A/B=45-300.
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DR PDB; 2HCT; X-ray; 1.95 A; A/B=45-300.
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DR PDB; 2I65; X-ray; 1.90 A; A/B=45-300.
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DR PDB; 2I66; X-ray; 1.70 A; A/B=45-300.
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DR PDB; 2I67; X-ray; 1.71 A; A/B=45-300.
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DR PDB; 2O3Q; X-ray; 1.98 A; A/B=45-300.
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DR PDB; 2O3R; X-ray; 1.75 A; A/B=45-300.
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DR PDB; 2O3S; X-ray; 1.50 A; A/B=45-300.
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DR PDB; 2O3T; X-ray; 1.68 A; A/B=45-300.
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DR PDB; 2O3U; X-ray; 2.11 A; A/B=45-300.
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DR PDB; 2PGJ; X-ray; 1.71 A; A/B=45-300.
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DR PDB; 2PGL; X-ray; 1.76 A; A/B=45-300.
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DR PDB; 3DZF; X-ray; 2.01 A; A/B/C/D/E/F=45-300.
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DR PDB; 3DZG; X-ray; 1.65 A; A/B=45-300.
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DR PDB; 3DZH; X-ray; 1.60 A; A/B=45-300.
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DR PDB; 3DZI; X-ray; 1.73 A; A/B=45-300.
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DR PDB; 3DZJ; X-ray; 1.90 A; A/B=45-300.
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DR PDB; 3DZK; X-ray; 1.81 A; A/B=45-300.
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DR PDB; 3F6Y; X-ray; 1.45 A; A=45-300.
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DR PDB; 3I9M; X-ray; 1.75 A; A/B=45-300.
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DR PDB; 3I9N; X-ray; 2.01 A; A/B=45-300.
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DR PDB; 3OFS; X-ray; 2.20 A; A/B/C/D/E/F=46-300.
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DR PDB; 3RAJ; X-ray; 3.04 A; A=46-300.
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DR PDB; 3ROK; X-ray; 1.65 A; A/B=45-296.
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DR PDB; 3ROM; X-ray; 2.04 A; A/B=45-296.
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DR PDB; 3ROP; X-ray; 1.94 A; A/B=45-296.
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DR PDB; 3ROQ; X-ray; 2.10 A; A/B=45-296.
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DR PDB; 3U4H; X-ray; 1.88 A; A/B=45-300.
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DR PDB; 3U4I; X-ray; 2.12 A; A/B=45-300.
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DR PDB; 4CMH; X-ray; 1.53 A; A=45-300.
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DR PDB; 4F45; X-ray; 2.10 A; A/B=46-300.
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DR PDB; 4F46; X-ray; 1.69 A; A/B=46-300.
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DR PDB; 4OGW; X-ray; 2.05 A; A=46-300.
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DR PDB; 4TMF; X-ray; 2.05 A; A/B=50-300.
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DR PDB; 4XJS; X-ray; 2.80 A; A=46-300.
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DR PDB; 4XJT; X-ray; 2.60 A; A=46-300.
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DR PDB; 5F1K; X-ray; 2.30 A; A/B=45-300.
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DR PDB; 5F1O; X-ray; 2.20 A; A=46-300.
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DR PDB; 5F21; X-ray; 1.90 A; A=46-300.
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DR PDB; 6EDR; X-ray; 2.40 A; A/B=45-300.
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DR PDB; 6VUA; X-ray; 1.50 A; A/B=45-300.
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DR PDB; 7DHA; X-ray; 2.55 A; A=45-300.
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DR PDB; 7DUO; X-ray; 2.81 A; B=57-285.
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DR PDBsum; 1YH3; -.
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DR PDBsum; 1ZVM; -.
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DR PDBsum; 2EF1; -.
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DR PDBsum; 2HCT; -.
|
233
|
+
DR PDBsum; 2I65; -.
|
234
|
+
DR PDBsum; 2I66; -.
|
235
|
+
DR PDBsum; 2I67; -.
|
236
|
+
DR PDBsum; 2O3Q; -.
|
237
|
+
DR PDBsum; 2O3R; -.
|
238
|
+
DR PDBsum; 2O3S; -.
|
239
|
+
DR PDBsum; 2O3T; -.
|
240
|
+
DR PDBsum; 2O3U; -.
|
241
|
+
DR PDBsum; 2PGJ; -.
|
242
|
+
DR PDBsum; 2PGL; -.
|
243
|
+
DR PDBsum; 3DZF; -.
|
244
|
+
DR PDBsum; 3DZG; -.
|
245
|
+
DR PDBsum; 3DZH; -.
|
246
|
+
DR PDBsum; 3DZI; -.
|
247
|
+
DR PDBsum; 3DZJ; -.
|
248
|
+
DR PDBsum; 3DZK; -.
|
249
|
+
DR PDBsum; 3F6Y; -.
|
250
|
+
DR PDBsum; 3I9M; -.
|
251
|
+
DR PDBsum; 3I9N; -.
|
252
|
+
DR PDBsum; 3OFS; -.
|
253
|
+
DR PDBsum; 3RAJ; -.
|
254
|
+
DR PDBsum; 3ROK; -.
|
255
|
+
DR PDBsum; 3ROM; -.
|
256
|
+
DR PDBsum; 3ROP; -.
|
257
|
+
DR PDBsum; 3ROQ; -.
|
258
|
+
DR PDBsum; 3U4H; -.
|
259
|
+
DR PDBsum; 3U4I; -.
|
260
|
+
DR PDBsum; 4CMH; -.
|
261
|
+
DR PDBsum; 4F45; -.
|
262
|
+
DR PDBsum; 4F46; -.
|
263
|
+
DR PDBsum; 4OGW; -.
|
264
|
+
DR PDBsum; 4TMF; -.
|
265
|
+
DR PDBsum; 4XJS; -.
|
266
|
+
DR PDBsum; 4XJT; -.
|
267
|
+
DR PDBsum; 5F1K; -.
|
268
|
+
DR PDBsum; 5F1O; -.
|
269
|
+
DR PDBsum; 5F21; -.
|
270
|
+
DR PDBsum; 6EDR; -.
|
271
|
+
DR PDBsum; 6VUA; -.
|
272
|
+
DR PDBsum; 7DHA; -.
|
273
|
+
DR PDBsum; 7DUO; -.
|
274
|
+
DR AlphaFoldDB; P28907; -.
|
275
|
+
DR SMR; P28907; -.
|
276
|
+
DR BioGRID; 107390; 10.
|
277
|
+
DR IntAct; P28907; 5.
|
278
|
+
DR STRING; 9606.ENSP00000226279; -.
|
279
|
+
DR BindingDB; P28907; -.
|
280
|
+
DR ChEMBL; CHEMBL4660; -.
|
281
|
+
DR DrugBank; DB09331; Daratumumab.
|
282
|
+
DR DrugBank; DB14811; Isatuximab.
|
283
|
+
DR DrugBank; DB16370; Mezagitamab.
|
284
|
+
DR DrugCentral; P28907; -.
|
285
|
+
DR GuidetoPHARMACOLOGY; 2766; -.
|
286
|
+
DR GlyConnect; 997; 1 N-Linked glycan (1 site).
|
287
|
+
DR GlyGen; P28907; 5 sites, 1 N-linked glycan (1 site).
|
288
|
+
DR iPTMnet; P28907; -.
|
289
|
+
DR PhosphoSitePlus; P28907; -.
|
290
|
+
DR SwissPalm; P28907; -.
|
291
|
+
DR BioMuta; CD38; -.
|
292
|
+
DR DMDM; 55977782; -.
|
293
|
+
DR EPD; P28907; -.
|
294
|
+
DR jPOST; P28907; -.
|
295
|
+
DR MassIVE; P28907; -.
|
296
|
+
DR MaxQB; P28907; -.
|
297
|
+
DR PaxDb; P28907; -.
|
298
|
+
DR PeptideAtlas; P28907; -.
|
299
|
+
DR PRIDE; P28907; -.
|
300
|
+
DR ProteomicsDB; 54507; -. [P28907-1]
|
301
|
+
DR ProteomicsDB; 54508; -. [P28907-2]
|
302
|
+
DR ABCD; P28907; 65 sequenced antibodies.
|
303
|
+
DR Antibodypedia; 9844; 2499 antibodies from 55 providers.
|
304
|
+
DR CPTC; P28907; 1 antibody.
|
305
|
+
DR DNASU; 952; -.
|
306
|
+
DR Ensembl; ENST00000226279.8; ENSP00000226279.2; ENSG00000004468.13. [P28907-1]
|
307
|
+
DR Ensembl; ENST00000502843.5; ENSP00000427277.1; ENSG00000004468.13. [P28907-2]
|
308
|
+
DR GeneID; 952; -.
|
309
|
+
DR KEGG; hsa:952; -.
|
310
|
+
DR MANE-Select; ENST00000226279.8; ENSP00000226279.2; NM_001775.4; NP_001766.2.
|
311
|
+
DR UCSC; uc003gol.2; human. [P28907-1]
|
312
|
+
DR CTD; 952; -.
|
313
|
+
DR DisGeNET; 952; -.
|
314
|
+
DR GeneCards; CD38; -.
|
315
|
+
DR HGNC; HGNC:1667; CD38.
|
316
|
+
DR HPA; ENSG00000004468; Tissue enhanced (lymphoid).
|
317
|
+
DR MIM; 107270; gene.
|
318
|
+
DR neXtProt; NX_P28907; -.
|
319
|
+
DR OpenTargets; ENSG00000004468; -.
|
320
|
+
DR PharmGKB; PA26214; -.
|
321
|
+
DR VEuPathDB; HostDB:ENSG00000004468; -.
|
322
|
+
DR eggNOG; ENOG502S1HV; Eukaryota.
|
323
|
+
DR GeneTree; ENSGT00390000017291; -.
|
324
|
+
DR HOGENOM; CLU_2025937_0_0_1; -.
|
325
|
+
DR InParanoid; P28907; -.
|
326
|
+
DR OMA; MNYDSCP; -.
|
327
|
+
DR PhylomeDB; P28907; -.
|
328
|
+
DR TreeFam; TF332530; -.
|
329
|
+
DR BioCyc; MetaCyc:HS00103-MON; -.
|
330
|
+
DR BRENDA; 2.4.99.20; 2681.
|
331
|
+
DR BRENDA; 3.2.2.5; 2681.
|
332
|
+
DR BRENDA; 3.2.2.6; 2681.
|
333
|
+
DR PathwayCommons; P28907; -.
|
334
|
+
DR Reactome; R-HSA-196807; Nicotinate metabolism.
|
335
|
+
DR SABIO-RK; P28907; -.
|
336
|
+
DR SignaLink; P28907; -.
|
337
|
+
DR SIGNOR; P28907; -.
|
338
|
+
DR BioGRID-ORCS; 952; 8 hits in 1077 CRISPR screens.
|
339
|
+
DR ChiTaRS; CD38; human.
|
340
|
+
DR EvolutionaryTrace; P28907; -.
|
341
|
+
DR GeneWiki; CD38; -.
|
342
|
+
DR GenomeRNAi; 952; -.
|
343
|
+
DR Pharos; P28907; Tclin.
|
344
|
+
DR PRO; PR:P28907; -.
|
345
|
+
DR Proteomes; UP000005640; Chromosome 4.
|
346
|
+
DR RNAct; P28907; protein.
|
347
|
+
DR Bgee; ENSG00000004468; Expressed in seminal vesicle and 129 other tissues.
|
348
|
+
DR ExpressionAtlas; P28907; baseline and differential.
|
349
|
+
DR Genevisible; P28907; HS.
|
350
|
+
DR GO; GO:0016323; C:basolateral plasma membrane; IEA:Ensembl.
|
351
|
+
DR GO; GO:0009986; C:cell surface; IEA:Ensembl.
|
352
|
+
DR GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB.
|
353
|
+
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
|
354
|
+
DR GO; GO:0016020; C:membrane; TAS:ProtInc.
|
355
|
+
DR GO; GO:0005634; C:nucleus; IEA:Ensembl.
|
356
|
+
DR GO; GO:0005886; C:plasma membrane; IDA:HPA.
|
357
|
+
DR GO; GO:0030667; C:secretory granule membrane; IEA:Ensembl.
|
358
|
+
DR GO; GO:0042802; F:identical protein binding; IEA:Ensembl.
|
359
|
+
DR GO; GO:0050135; F:NAD(P)+ nucleosidase activity; IEA:UniProtKB-EC.
|
360
|
+
DR GO; GO:0003953; F:NAD+ nucleosidase activity; IBA:GO_Central.
|
361
|
+
DR GO; GO:0061809; F:NAD+ nucleotidase, cyclic ADP-ribose generating; IEA:UniProtKB-EC.
|
362
|
+
DR GO; GO:0016849; F:phosphorus-oxygen lyase activity; IBA:GO_Central.
|
363
|
+
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
|
364
|
+
DR GO; GO:0097190; P:apoptotic signaling pathway; TAS:ProtInc.
|
365
|
+
DR GO; GO:0014824; P:artery smooth muscle contraction; IEA:Ensembl.
|
366
|
+
DR GO; GO:0042100; P:B cell proliferation; IEA:Ensembl.
|
367
|
+
DR GO; GO:0050853; P:B cell receptor signaling pathway; IMP:UniProtKB.
|
368
|
+
DR GO; GO:0007565; P:female pregnancy; IEA:Ensembl.
|
369
|
+
DR GO; GO:0060292; P:long-term synaptic depression; IEA:Ensembl.
|
370
|
+
DR GO; GO:0019674; P:NAD metabolic process; TAS:Reactome.
|
371
|
+
DR GO; GO:0043066; P:negative regulation of apoptotic process; IMP:UniProtKB.
|
372
|
+
DR GO; GO:0045779; P:negative regulation of bone resorption; IEA:Ensembl.
|
373
|
+
DR GO; GO:0010977; P:negative regulation of neuron projection development; IEA:Ensembl.
|
374
|
+
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:UniProtKB.
|
375
|
+
DR GO; GO:0030890; P:positive regulation of B cell proliferation; IMP:UniProtKB.
|
376
|
+
DR GO; GO:0030307; P:positive regulation of cell growth; IEA:Ensembl.
|
377
|
+
DR GO; GO:0007204; P:positive regulation of cytosolic calcium ion concentration; IEA:Ensembl.
|
378
|
+
DR GO; GO:0032024; P:positive regulation of insulin secretion; IEA:Ensembl.
|
379
|
+
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:UniProtKB.
|
380
|
+
DR GO; GO:0045907; P:positive regulation of vasoconstriction; IEA:Ensembl.
|
381
|
+
DR GO; GO:0032355; P:response to estradiol; IEA:Ensembl.
|
382
|
+
DR GO; GO:0033194; P:response to hydroperoxide; IEA:Ensembl.
|
383
|
+
DR GO; GO:0001666; P:response to hypoxia; IEA:Ensembl.
|
384
|
+
DR GO; GO:0070555; P:response to interleukin-1; IEA:Ensembl.
|
385
|
+
DR GO; GO:0032570; P:response to progesterone; IEA:Ensembl.
|
386
|
+
DR GO; GO:0032526; P:response to retinoic acid; IEA:Ensembl.
|
387
|
+
DR GO; GO:0009410; P:response to xenobiotic stimulus; IMP:UniProtKB.
|
388
|
+
DR GO; GO:0007165; P:signal transduction; NAS:ProtInc.
|
389
|
+
DR CDD; cd04759; Rib_hydrolase; 1.
|
390
|
+
DR InterPro; IPR003193; ADP-ribosyl_cyclase.
|
391
|
+
DR InterPro; IPR033567; CD38.
|
392
|
+
DR PANTHER; PTHR10912; PTHR10912; 1.
|
393
|
+
DR PANTHER; PTHR10912:SF5; PTHR10912:SF5; 1.
|
394
|
+
DR Pfam; PF02267; Rib_hydrolayse; 1.
|
395
|
+
PE 1: Evidence at protein level;
|
396
|
+
KW 3D-structure; Alternative splicing; Diabetes mellitus; Disulfide bond;
|
397
|
+
KW Glycoprotein; Hydrolase; Membrane; NAD; NADP; Receptor; Reference proteome;
|
398
|
+
KW Signal-anchor; Transferase; Transmembrane; Transmembrane helix.
|
399
|
+
FT CHAIN 1..300
|
400
|
+
FT /note="ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1"
|
401
|
+
FT /id="PRO_0000144066"
|
402
|
+
FT TOPO_DOM 1..21
|
403
|
+
FT /note="Cytoplasmic"
|
404
|
+
FT /evidence="ECO:0000255"
|
405
|
+
FT TRANSMEM 22..42
|
406
|
+
FT /note="Helical; Signal-anchor for type II membrane protein"
|
407
|
+
FT /evidence="ECO:0000255"
|
408
|
+
FT TOPO_DOM 43..300
|
409
|
+
FT /note="Extracellular"
|
410
|
+
FT /evidence="ECO:0000255"
|
411
|
+
FT ACT_SITE 119
|
412
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
413
|
+
FT ACT_SITE 201
|
414
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
415
|
+
FT CARBOHYD 100
|
416
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
417
|
+
FT /evidence="ECO:0000269|PubMed:19159218"
|
418
|
+
FT CARBOHYD 164
|
419
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
420
|
+
FT /evidence="ECO:0000255"
|
421
|
+
FT CARBOHYD 209
|
422
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
423
|
+
FT /evidence="ECO:0000269|PubMed:19159218"
|
424
|
+
FT CARBOHYD 219
|
425
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
426
|
+
FT /evidence="ECO:0000269|PubMed:19159218,
|
427
|
+
FT ECO:0000269|PubMed:19349973"
|
428
|
+
FT DISULFID 67..82
|
429
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
430
|
+
FT DISULFID 99..180
|
431
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
432
|
+
FT DISULFID 160..173
|
433
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
434
|
+
FT DISULFID 254..275
|
435
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
436
|
+
FT DISULFID 287..296
|
437
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
438
|
+
FT VAR_SEQ 122
|
439
|
+
FT /note="I -> K (in isoform 2)"
|
440
|
+
FT /evidence="ECO:0000303|PubMed:9074508"
|
441
|
+
FT /id="VSP_000707"
|
442
|
+
FT VAR_SEQ 123..300
|
443
|
+
FT /note="Missing (in isoform 2)"
|
444
|
+
FT /evidence="ECO:0000303|PubMed:9074508"
|
445
|
+
FT /id="VSP_000708"
|
446
|
+
FT VARIANT 140
|
447
|
+
FT /note="R -> W (seems to contribute to the development of
|
448
|
+
FT type II diabetes; 50% reduction in activity;
|
449
|
+
FT dbSNP:rs1800561)"
|
450
|
+
FT /evidence="ECO:0000269|PubMed:9754820"
|
451
|
+
FT /id="VAR_001323"
|
452
|
+
FT MUTAGEN 119
|
453
|
+
FT /note="C->K: Loss of cADPr hydrolase activity."
|
454
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
455
|
+
FT MUTAGEN 119
|
456
|
+
FT /note="C->R,E,A: Loss of cADPr hydrolase and ADP-ribosyl
|
457
|
+
FT cyclase activity."
|
458
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
459
|
+
FT MUTAGEN 160
|
460
|
+
FT /note="C->A: Loss of cADPr hydrolase and ADP-ribosyl
|
461
|
+
FT cyclase activity."
|
462
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
463
|
+
FT MUTAGEN 173
|
464
|
+
FT /note="C->A: Loss of cADPr hydrolase and ADP-ribosyl
|
465
|
+
FT cyclase activity."
|
466
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
467
|
+
FT MUTAGEN 201
|
468
|
+
FT /note="C->D,K,A: Loss of cADPr hydrolase and ADP-ribosyl
|
469
|
+
FT cyclase activity."
|
470
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
471
|
+
FT MUTAGEN 201
|
472
|
+
FT /note="C->E: Loss of cADPr hydrolase activity."
|
473
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
474
|
+
FT CONFLICT 49
|
475
|
+
FT /note="Q -> T (in Ref. 1; AAA68482)"
|
476
|
+
FT /evidence="ECO:0000305"
|
477
|
+
FT STRAND 51..53
|
478
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
479
|
+
FT HELIX 59..73
|
480
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
481
|
+
FT HELIX 75..77
|
482
|
+
FT /evidence="ECO:0007829|PDB:2O3S"
|
483
|
+
FT HELIX 82..93
|
484
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
485
|
+
FT STRAND 94..96
|
486
|
+
FT /evidence="ECO:0007829|PDB:3RAJ"
|
487
|
+
FT HELIX 98..100
|
488
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
489
|
+
FT HELIX 103..106
|
490
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
491
|
+
FT HELIX 107..112
|
492
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
493
|
+
FT HELIX 119..121
|
494
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
495
|
+
FT STRAND 122..127
|
496
|
+
FT /evidence="ECO:0007829|PDB:2O3S"
|
497
|
+
FT STRAND 132..134
|
498
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
499
|
+
FT HELIX 136..141
|
500
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
501
|
+
FT STRAND 142..144
|
502
|
+
FT /evidence="ECO:0007829|PDB:3RAJ"
|
503
|
+
FT HELIX 145..147
|
504
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
505
|
+
FT HELIX 149..154
|
506
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
507
|
+
FT STRAND 165..167
|
508
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
509
|
+
FT STRAND 171..173
|
510
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
511
|
+
FT TURN 176..179
|
512
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
513
|
+
FT STRAND 181..183
|
514
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
515
|
+
FT HELIX 184..199
|
516
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
517
|
+
FT STRAND 202..209
|
518
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
519
|
+
FT STRAND 212..216
|
520
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
521
|
+
FT STRAND 218..220
|
522
|
+
FT /evidence="ECO:0007829|PDB:2EF1"
|
523
|
+
FT HELIX 221..224
|
524
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
525
|
+
FT HELIX 227..229
|
526
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
527
|
+
FT TURN 232..234
|
528
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
529
|
+
FT STRAND 235..243
|
530
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
531
|
+
FT STRAND 246..249
|
532
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
533
|
+
FT HELIX 253..255
|
534
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
535
|
+
FT HELIX 257..268
|
536
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
537
|
+
FT STRAND 272..278
|
538
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
539
|
+
FT HELIX 281..289
|
540
|
+
FT /evidence="ECO:0007829|PDB:2O3S"
|
541
|
+
FT TURN 291..293
|
542
|
+
FT /evidence="ECO:0007829|PDB:3DZG"
|
543
|
+
FT HELIX 294..296
|
544
|
+
FT /evidence="ECO:0007829|PDB:5F21"
|
545
|
+
SQ SEQUENCE 300 AA; 34328 MW; 47BBE38C3DE3E6AA CRC64;
|
546
|
+
MANCEFSPVS GDKPCCRLSR RAQLCLGVSI LVLILVVVLA VVVPRWRQQW SGPGTTKRFP
|
547
|
+
ETVLARCVKY TEIHPEMRHV DCQSVWDAFK GAFISKHPCN ITEEDYQPLM KLGTQTVPCN
|
548
|
+
KILLWSRIKD LAHQFTQVQR DMFTLEDTLL GYLADDLTWC GEFNTSKINY QSCPDWRKDC
|
549
|
+
SNNPVSVFWK TVSRRFAEAA CDVVHVMLNG SRSKIFDKNS TFGSVEVHNL QPEKVQTLEA
|
550
|
+
WVIHGGREDS RDLCQDPTIK ELESIISKRN IQFSCKNIYR PDKFLQCVKN PEDSSCTSEI
|
551
|
+
//
|