bio 2.0.3 → 2.0.5
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- checksums.yaml +4 -4
- data/.github/workflows/ruby.yml +38 -0
- data/.gitignore +32 -0
- data/ChangeLog +366 -0
- data/Gemfile +3 -0
- data/LEGAL +11 -0
- data/README.rdoc +1 -1
- data/RELEASE_NOTES.rdoc +50 -0
- data/appveyor.yml +14 -13
- data/bioruby.gemspec +9 -10
- data/lib/bio/appl/blast/genomenet.rb +2 -1
- data/lib/bio/appl/pts1.rb +1 -1
- data/lib/bio/db/embl/uniprotkb.rb +184 -26
- data/lib/bio/version.rb +1 -1
- data/test/data/uniprot/P03589.uniprot +127 -0
- data/test/data/uniprot/P28907.uniprot +551 -0
- data/test/data/uniprot/P49144.uniprot +232 -0
- data/test/functional/bio/test_command.rb +2 -0
- data/test/network/bio/db/kegg/test_genes_hsa7422.rb +26 -12
- data/test/unit/bio/db/embl/test_uniprotkb_P03589.rb +378 -0
- data/test/unit/bio/db/embl/test_uniprotkb_P28907.rb +325 -0
- data/test/unit/bio/db/embl/test_uniprotkb_P49144.rb +359 -0
- metadata +14 -15
- data/.travis.yml +0 -71
- data/gemfiles/Gemfile.travis-jruby1.8 +0 -6
- data/gemfiles/Gemfile.travis-jruby1.9 +0 -5
- data/gemfiles/Gemfile.travis-rbx +0 -10
- data/gemfiles/Gemfile.travis-ruby1.8 +0 -6
- data/gemfiles/Gemfile.travis-ruby1.9 +0 -5
- data/gemfiles/Gemfile.windows +0 -6
- data/gemfiles/modify-Gemfile.rb +0 -28
- data/gemfiles/prepare-gemspec.rb +0 -29
@@ -0,0 +1,551 @@
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ID CD38_HUMAN Reviewed; 300 AA.
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2
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AC P28907; O00121; O00122; Q96HY4;
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3
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DT 01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
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4
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DT 23-NOV-2004, sequence version 2.
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5
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DT 03-AUG-2022, entry version 213.
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6
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DE RecName: Full=ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1;
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DE EC=3.2.2.6;
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8
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DE AltName: Full=2'-phospho-ADP-ribosyl cyclase;
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DE AltName: Full=2'-phospho-ADP-ribosyl cyclase/2'-phospho-cyclic-ADP-ribose transferase;
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10
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DE EC=2.4.99.20;
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11
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DE AltName: Full=2'-phospho-cyclic-ADP-ribose transferase;
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DE AltName: Full=ADP-ribosyl cyclase 1;
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DE Short=ADPRC 1;
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DE AltName: Full=Cyclic ADP-ribose hydrolase 1;
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DE Short=cADPr hydrolase 1;
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16
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DE AltName: Full=T10;
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DE AltName: CD_antigen=CD38;
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GN Name=CD38;
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19
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OS Homo sapiens (Human).
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OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
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OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
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OC Homo.
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OX NCBI_TaxID=9606;
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24
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RN [1]
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25
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RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
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RX PubMed=2319135;
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RA Jackson D.G., Bell J.I.;
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RT "Isolation of a cDNA encoding the human CD38 (T10) molecule, a cell surface
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RT glycoprotein with an unusual discontinuous pattern of expression during
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30
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RT lymphocyte differentiation.";
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31
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RL J. Immunol. 144:2811-2815(1990).
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32
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RN [2]
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33
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RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1
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34
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RP AND 2), AND TISSUE SPECIFICITY.
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35
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RC TISSUE=Esophageal carcinoma, and Pancreas;
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RX PubMed=9074508; DOI=10.1016/s0378-1119(96)00723-8;
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37
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RA Nata K., Takamura T., Karasawa T., Kumagai T., Hashioka W., Tohgo A.,
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38
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RA Yonekura H., Takasawa S., Nakamura S., Okamoto H.;
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39
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RT "Human gene encoding CD38 (ADP-ribosyl cyclase/cyclic ADP-ribose
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40
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RT hydrolase): organization, nucleotide sequence and alternative splicing.";
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41
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RL Gene 186:285-292(1997).
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42
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RN [3]
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43
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RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
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44
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RC TISSUE=B-cell;
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45
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RX PubMed=15489334; DOI=10.1101/gr.2596504;
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46
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RG The MGC Project Team;
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RT "The status, quality, and expansion of the NIH full-length cDNA project:
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RT the Mammalian Gene Collection (MGC).";
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49
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RL Genome Res. 14:2121-2127(2004).
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50
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RN [4]
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51
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RP SIMILARITY TO NADASE.
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RX PubMed=1471258; DOI=10.1016/0968-0004(92)90337-9;
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53
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RA States D.J., Walseth T.F., Lee H.C.;
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RT "Similarities in amino acid sequences of Aplysia ADP-ribosyl cyclase and
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RT human lymphocyte antigen CD38.";
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RL Trends Biochem. Sci. 17:495-495(1992).
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57
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RN [5]
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58
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RP CHARACTERIZATION.
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RX PubMed=8253715; DOI=10.1016/s0021-9258(19)74275-6;
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RA Takasawa S., Tohgo A., Noguchi N., Koguma T., Nata K., Sugimoto T.,
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RA Yonekura H., Okamoto H.;
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RT "Synthesis and hydrolysis of cyclic ADP-ribose by human leukocyte antigen
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RT CD38 and inhibition of the hydrolysis by ATP.";
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64
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RL J. Biol. Chem. 268:26052-26054(1993).
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65
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RN [6]
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66
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RP ACTIVE SITE, AND MUTAGENESIS OF CYS-119; CYS-160; CYS-173 AND CYS-201.
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RX PubMed=7961800; DOI=10.1016/s0021-9258(19)61940-x;
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RA Tohgo A., Takasawa S., Noguchi N., Koguma T., Nata K., Sugimoto T.,
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69
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RA Furuya Y., Yonekura H., Okamoto H.;
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RT "Essential cysteine residues for cyclic ADP-ribose synthesis and hydrolysis
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RT by CD38.";
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72
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RL J. Biol. Chem. 269:28555-28557(1994).
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73
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RN [7]
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74
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RP SPLICE ISOFORM(S) THAT ARE POTENTIAL NMD TARGET(S).
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RX PubMed=14759258; DOI=10.1186/gb-2004-5-2-r8;
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RA Hillman R.T., Green R.E., Brenner S.E.;
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77
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RT "An unappreciated role for RNA surveillance.";
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78
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RL Genome Biol. 5:R8.1-R8.16(2004).
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RN [8]
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RP CATALYTIC ACTIVITY.
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RX PubMed=16690024; DOI=10.1016/j.bbrc.2006.04.096;
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82
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RA Moreschi I., Bruzzone S., Melone L., De Flora A., Zocchi E.;
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RT "NAADP+ synthesis from cADPRP and nicotinic acid by ADP-ribosyl cyclases.";
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RL Biochem. Biophys. Res. Commun. 345:573-580(2006).
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85
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RN [9]
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86
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RP GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-100; ASN-209 AND ASN-219.
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87
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RC TISSUE=Liver;
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RX PubMed=19159218; DOI=10.1021/pr8008012;
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RA Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H.;
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90
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RT "Glycoproteomics analysis of human liver tissue by combination of multiple
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RT enzyme digestion and hydrazide chemistry.";
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RL J. Proteome Res. 8:651-661(2009).
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93
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RN [10]
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94
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RP GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-219.
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95
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RC TISSUE=Leukemic T-cell;
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RX PubMed=19349973; DOI=10.1038/nbt.1532;
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97
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RA Wollscheid B., Bausch-Fluck D., Henderson C., O'Brien R., Bibel M.,
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98
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RA Schiess R., Aebersold R., Watts J.D.;
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RT "Mass-spectrometric identification and relative quantification of N-linked
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100
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RT cell surface glycoproteins.";
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RL Nat. Biotechnol. 27:378-386(2009).
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102
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RN [11]
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103
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RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
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RX PubMed=21269460; DOI=10.1186/1752-0509-5-17;
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RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
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106
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RA Bennett K.L., Superti-Furga G., Colinge J.;
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RT "Initial characterization of the human central proteome.";
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RL BMC Syst. Biol. 5:17-17(2011).
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RN [12]
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RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
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RX PubMed=25944712; DOI=10.1002/pmic.201400617;
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RA Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M., Ayoub D.,
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113
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RA Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
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RT "N-terminome analysis of the human mitochondrial proteome.";
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RL Proteomics 15:2519-2524(2015).
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RN [13]
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RP X-RAY CRYSTALLOGRAPHY (1.91 ANGSTROMS) OF 45-300, AND DISULFIDE BONDS.
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RX PubMed=16154090; DOI=10.1016/j.str.2005.05.012;
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RA Liu Q., Kriksunov I.A., Graeff R., Munshi C., Lee H.C., Hao Q.;
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120
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RT "Crystal structure of human CD38 extracellular domain.";
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RL Structure 13:1331-1339(2005).
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RN [14]
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RP VARIANT TRP-140.
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RX PubMed=9754820; DOI=10.1007/s001250051026;
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125
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RA Yagui K., Shimada F., Mimura M., Hashimoto N., Suzuki Y., Tokuyama Y.,
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126
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RA Nata K., Tohgo A., Ikehata F., Takasawa S., Okamoto H., Makino H.,
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127
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RA Saito Y., Kanatsuka A.;
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128
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RT "A missense mutation in the CD38 gene, a novel factor for insulin
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RT secretion: association with Type II diabetes mellitus in Japanese subjects
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RT and evidence of abnormal function when expressed in vitro.";
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RL Diabetologia 41:1024-1028(1998).
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CC -!- FUNCTION: Synthesizes the second messengers cyclic ADP-ribose and
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CC nicotinate-adenine dinucleotide phosphate, the former a second
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CC messenger for glucose-induced insulin secretion. Also has cADPr
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135
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CC hydrolase activity. Also moonlights as a receptor in cells of the
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CC immune system.
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CC -!- CATALYTIC ACTIVITY:
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CC Reaction=H2O + NAD(+) = ADP-D-ribose + H(+) + nicotinamide;
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CC Xref=Rhea:RHEA:16301, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378,
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140
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CC ChEBI:CHEBI:17154, ChEBI:CHEBI:57540, ChEBI:CHEBI:57967; EC=3.2.2.6;
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CC Evidence={ECO:0000269|PubMed:16690024};
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CC -!- CATALYTIC ACTIVITY:
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CC Reaction=NADP(+) + nicotinate = nicotinamide + nicotinate-adenine
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CC dinucleotide phosphate; Xref=Rhea:RHEA:38599, ChEBI:CHEBI:17154,
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CC ChEBI:CHEBI:32544, ChEBI:CHEBI:58349, ChEBI:CHEBI:75967;
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CC EC=2.4.99.20; Evidence={ECO:0000269|PubMed:16690024};
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147
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CC -!- ACTIVITY REGULATION: ATP inhibits the hydrolyzing activity.
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CC -!- SUBCELLULAR LOCATION: Membrane; Single-pass type II membrane protein.
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CC -!- ALTERNATIVE PRODUCTS:
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CC Event=Alternative splicing; Named isoforms=2;
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CC Name=1;
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152
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CC IsoId=P28907-1; Sequence=Displayed;
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CC Name=2;
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154
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CC IsoId=P28907-2; Sequence=VSP_000707, VSP_000708;
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CC -!- TISSUE SPECIFICITY: Expressed at high levels in pancreas, liver,
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156
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CC kidney, brain, testis, ovary, placenta, malignant lymphoma and
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157
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CC neuroblastoma. {ECO:0000269|PubMed:9074508}.
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158
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CC -!- DEVELOPMENTAL STAGE: Preferentially expressed at both early and late
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159
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CC stages of the B and T-cell maturation. It is also detected on erythroid
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CC and myeloid progenitors in bone marrow, where the level of surface
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161
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CC expression was shown to decrease during differentiation of blast-
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162
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CC forming unit E to colony-forming unit E.
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163
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CC -!- MISCELLANEOUS: [Isoform 2]: May be produced at very low levels due to a
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164
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CC premature stop codon in the mRNA, leading to nonsense-mediated mRNA
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165
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CC decay. {ECO:0000305}.
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166
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CC -!- SIMILARITY: Belongs to the ADP-ribosyl cyclase family. {ECO:0000305}.
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167
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CC -!- WEB RESOURCE: Name=Wikipedia; Note=CD38 entry;
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168
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CC URL="https://en.wikipedia.org/wiki/CD38";
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CC -!- WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and
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CC Haematology;
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CC URL="http://atlasgeneticsoncology.org/Genes/CD38ID978ch4p15.html";
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CC ---------------------------------------------------------------------------
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CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
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CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
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CC ---------------------------------------------------------------------------
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DR EMBL; M34461; AAA68482.1; -; mRNA.
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177
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DR EMBL; D84276; BAA18964.1; -; mRNA.
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178
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DR EMBL; D84277; BAA18965.1; -; mRNA.
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DR EMBL; D84284; BAA18966.1; -; Genomic_DNA.
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180
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DR EMBL; BC007964; AAH07964.1; -; mRNA.
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181
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DR CCDS; CCDS3417.1; -. [P28907-1]
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182
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DR PIR; A43521; A43521.
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183
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DR RefSeq; NP_001766.2; NM_001775.3. [P28907-1]
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184
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DR PDB; 1YH3; X-ray; 1.91 A; A/B=45-300.
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185
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DR PDB; 1ZVM; X-ray; 2.20 A; A/B/C/D=45-300.
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186
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DR PDB; 2EF1; X-ray; 2.40 A; A/B=45-300.
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187
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DR PDB; 2HCT; X-ray; 1.95 A; A/B=45-300.
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188
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DR PDB; 2I65; X-ray; 1.90 A; A/B=45-300.
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189
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DR PDB; 2I66; X-ray; 1.70 A; A/B=45-300.
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190
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DR PDB; 2I67; X-ray; 1.71 A; A/B=45-300.
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191
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DR PDB; 2O3Q; X-ray; 1.98 A; A/B=45-300.
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192
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DR PDB; 2O3R; X-ray; 1.75 A; A/B=45-300.
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193
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DR PDB; 2O3S; X-ray; 1.50 A; A/B=45-300.
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194
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DR PDB; 2O3T; X-ray; 1.68 A; A/B=45-300.
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195
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DR PDB; 2O3U; X-ray; 2.11 A; A/B=45-300.
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196
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DR PDB; 2PGJ; X-ray; 1.71 A; A/B=45-300.
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197
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DR PDB; 2PGL; X-ray; 1.76 A; A/B=45-300.
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198
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DR PDB; 3DZF; X-ray; 2.01 A; A/B/C/D/E/F=45-300.
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199
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DR PDB; 3DZG; X-ray; 1.65 A; A/B=45-300.
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200
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DR PDB; 3DZH; X-ray; 1.60 A; A/B=45-300.
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201
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DR PDB; 3DZI; X-ray; 1.73 A; A/B=45-300.
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202
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DR PDB; 3DZJ; X-ray; 1.90 A; A/B=45-300.
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203
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DR PDB; 3DZK; X-ray; 1.81 A; A/B=45-300.
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204
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DR PDB; 3F6Y; X-ray; 1.45 A; A=45-300.
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205
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DR PDB; 3I9M; X-ray; 1.75 A; A/B=45-300.
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206
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DR PDB; 3I9N; X-ray; 2.01 A; A/B=45-300.
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207
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DR PDB; 3OFS; X-ray; 2.20 A; A/B/C/D/E/F=46-300.
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208
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DR PDB; 3RAJ; X-ray; 3.04 A; A=46-300.
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209
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DR PDB; 3ROK; X-ray; 1.65 A; A/B=45-296.
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210
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DR PDB; 3ROM; X-ray; 2.04 A; A/B=45-296.
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211
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DR PDB; 3ROP; X-ray; 1.94 A; A/B=45-296.
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212
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DR PDB; 3ROQ; X-ray; 2.10 A; A/B=45-296.
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213
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DR PDB; 3U4H; X-ray; 1.88 A; A/B=45-300.
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214
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DR PDB; 3U4I; X-ray; 2.12 A; A/B=45-300.
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215
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DR PDB; 4CMH; X-ray; 1.53 A; A=45-300.
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216
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DR PDB; 4F45; X-ray; 2.10 A; A/B=46-300.
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217
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DR PDB; 4F46; X-ray; 1.69 A; A/B=46-300.
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218
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DR PDB; 4OGW; X-ray; 2.05 A; A=46-300.
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219
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DR PDB; 4TMF; X-ray; 2.05 A; A/B=50-300.
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220
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DR PDB; 4XJS; X-ray; 2.80 A; A=46-300.
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221
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DR PDB; 4XJT; X-ray; 2.60 A; A=46-300.
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222
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DR PDB; 5F1K; X-ray; 2.30 A; A/B=45-300.
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223
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DR PDB; 5F1O; X-ray; 2.20 A; A=46-300.
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224
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DR PDB; 5F21; X-ray; 1.90 A; A=46-300.
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225
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DR PDB; 6EDR; X-ray; 2.40 A; A/B=45-300.
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226
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DR PDB; 6VUA; X-ray; 1.50 A; A/B=45-300.
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227
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DR PDB; 7DHA; X-ray; 2.55 A; A=45-300.
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228
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DR PDB; 7DUO; X-ray; 2.81 A; B=57-285.
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229
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DR PDBsum; 1YH3; -.
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230
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DR PDBsum; 1ZVM; -.
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231
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DR PDBsum; 2EF1; -.
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232
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DR PDBsum; 2HCT; -.
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233
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DR PDBsum; 2I65; -.
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234
|
+
DR PDBsum; 2I66; -.
|
235
|
+
DR PDBsum; 2I67; -.
|
236
|
+
DR PDBsum; 2O3Q; -.
|
237
|
+
DR PDBsum; 2O3R; -.
|
238
|
+
DR PDBsum; 2O3S; -.
|
239
|
+
DR PDBsum; 2O3T; -.
|
240
|
+
DR PDBsum; 2O3U; -.
|
241
|
+
DR PDBsum; 2PGJ; -.
|
242
|
+
DR PDBsum; 2PGL; -.
|
243
|
+
DR PDBsum; 3DZF; -.
|
244
|
+
DR PDBsum; 3DZG; -.
|
245
|
+
DR PDBsum; 3DZH; -.
|
246
|
+
DR PDBsum; 3DZI; -.
|
247
|
+
DR PDBsum; 3DZJ; -.
|
248
|
+
DR PDBsum; 3DZK; -.
|
249
|
+
DR PDBsum; 3F6Y; -.
|
250
|
+
DR PDBsum; 3I9M; -.
|
251
|
+
DR PDBsum; 3I9N; -.
|
252
|
+
DR PDBsum; 3OFS; -.
|
253
|
+
DR PDBsum; 3RAJ; -.
|
254
|
+
DR PDBsum; 3ROK; -.
|
255
|
+
DR PDBsum; 3ROM; -.
|
256
|
+
DR PDBsum; 3ROP; -.
|
257
|
+
DR PDBsum; 3ROQ; -.
|
258
|
+
DR PDBsum; 3U4H; -.
|
259
|
+
DR PDBsum; 3U4I; -.
|
260
|
+
DR PDBsum; 4CMH; -.
|
261
|
+
DR PDBsum; 4F45; -.
|
262
|
+
DR PDBsum; 4F46; -.
|
263
|
+
DR PDBsum; 4OGW; -.
|
264
|
+
DR PDBsum; 4TMF; -.
|
265
|
+
DR PDBsum; 4XJS; -.
|
266
|
+
DR PDBsum; 4XJT; -.
|
267
|
+
DR PDBsum; 5F1K; -.
|
268
|
+
DR PDBsum; 5F1O; -.
|
269
|
+
DR PDBsum; 5F21; -.
|
270
|
+
DR PDBsum; 6EDR; -.
|
271
|
+
DR PDBsum; 6VUA; -.
|
272
|
+
DR PDBsum; 7DHA; -.
|
273
|
+
DR PDBsum; 7DUO; -.
|
274
|
+
DR AlphaFoldDB; P28907; -.
|
275
|
+
DR SMR; P28907; -.
|
276
|
+
DR BioGRID; 107390; 10.
|
277
|
+
DR IntAct; P28907; 5.
|
278
|
+
DR STRING; 9606.ENSP00000226279; -.
|
279
|
+
DR BindingDB; P28907; -.
|
280
|
+
DR ChEMBL; CHEMBL4660; -.
|
281
|
+
DR DrugBank; DB09331; Daratumumab.
|
282
|
+
DR DrugBank; DB14811; Isatuximab.
|
283
|
+
DR DrugBank; DB16370; Mezagitamab.
|
284
|
+
DR DrugCentral; P28907; -.
|
285
|
+
DR GuidetoPHARMACOLOGY; 2766; -.
|
286
|
+
DR GlyConnect; 997; 1 N-Linked glycan (1 site).
|
287
|
+
DR GlyGen; P28907; 5 sites, 1 N-linked glycan (1 site).
|
288
|
+
DR iPTMnet; P28907; -.
|
289
|
+
DR PhosphoSitePlus; P28907; -.
|
290
|
+
DR SwissPalm; P28907; -.
|
291
|
+
DR BioMuta; CD38; -.
|
292
|
+
DR DMDM; 55977782; -.
|
293
|
+
DR EPD; P28907; -.
|
294
|
+
DR jPOST; P28907; -.
|
295
|
+
DR MassIVE; P28907; -.
|
296
|
+
DR MaxQB; P28907; -.
|
297
|
+
DR PaxDb; P28907; -.
|
298
|
+
DR PeptideAtlas; P28907; -.
|
299
|
+
DR PRIDE; P28907; -.
|
300
|
+
DR ProteomicsDB; 54507; -. [P28907-1]
|
301
|
+
DR ProteomicsDB; 54508; -. [P28907-2]
|
302
|
+
DR ABCD; P28907; 65 sequenced antibodies.
|
303
|
+
DR Antibodypedia; 9844; 2499 antibodies from 55 providers.
|
304
|
+
DR CPTC; P28907; 1 antibody.
|
305
|
+
DR DNASU; 952; -.
|
306
|
+
DR Ensembl; ENST00000226279.8; ENSP00000226279.2; ENSG00000004468.13. [P28907-1]
|
307
|
+
DR Ensembl; ENST00000502843.5; ENSP00000427277.1; ENSG00000004468.13. [P28907-2]
|
308
|
+
DR GeneID; 952; -.
|
309
|
+
DR KEGG; hsa:952; -.
|
310
|
+
DR MANE-Select; ENST00000226279.8; ENSP00000226279.2; NM_001775.4; NP_001766.2.
|
311
|
+
DR UCSC; uc003gol.2; human. [P28907-1]
|
312
|
+
DR CTD; 952; -.
|
313
|
+
DR DisGeNET; 952; -.
|
314
|
+
DR GeneCards; CD38; -.
|
315
|
+
DR HGNC; HGNC:1667; CD38.
|
316
|
+
DR HPA; ENSG00000004468; Tissue enhanced (lymphoid).
|
317
|
+
DR MIM; 107270; gene.
|
318
|
+
DR neXtProt; NX_P28907; -.
|
319
|
+
DR OpenTargets; ENSG00000004468; -.
|
320
|
+
DR PharmGKB; PA26214; -.
|
321
|
+
DR VEuPathDB; HostDB:ENSG00000004468; -.
|
322
|
+
DR eggNOG; ENOG502S1HV; Eukaryota.
|
323
|
+
DR GeneTree; ENSGT00390000017291; -.
|
324
|
+
DR HOGENOM; CLU_2025937_0_0_1; -.
|
325
|
+
DR InParanoid; P28907; -.
|
326
|
+
DR OMA; MNYDSCP; -.
|
327
|
+
DR PhylomeDB; P28907; -.
|
328
|
+
DR TreeFam; TF332530; -.
|
329
|
+
DR BioCyc; MetaCyc:HS00103-MON; -.
|
330
|
+
DR BRENDA; 2.4.99.20; 2681.
|
331
|
+
DR BRENDA; 3.2.2.5; 2681.
|
332
|
+
DR BRENDA; 3.2.2.6; 2681.
|
333
|
+
DR PathwayCommons; P28907; -.
|
334
|
+
DR Reactome; R-HSA-196807; Nicotinate metabolism.
|
335
|
+
DR SABIO-RK; P28907; -.
|
336
|
+
DR SignaLink; P28907; -.
|
337
|
+
DR SIGNOR; P28907; -.
|
338
|
+
DR BioGRID-ORCS; 952; 8 hits in 1077 CRISPR screens.
|
339
|
+
DR ChiTaRS; CD38; human.
|
340
|
+
DR EvolutionaryTrace; P28907; -.
|
341
|
+
DR GeneWiki; CD38; -.
|
342
|
+
DR GenomeRNAi; 952; -.
|
343
|
+
DR Pharos; P28907; Tclin.
|
344
|
+
DR PRO; PR:P28907; -.
|
345
|
+
DR Proteomes; UP000005640; Chromosome 4.
|
346
|
+
DR RNAct; P28907; protein.
|
347
|
+
DR Bgee; ENSG00000004468; Expressed in seminal vesicle and 129 other tissues.
|
348
|
+
DR ExpressionAtlas; P28907; baseline and differential.
|
349
|
+
DR Genevisible; P28907; HS.
|
350
|
+
DR GO; GO:0016323; C:basolateral plasma membrane; IEA:Ensembl.
|
351
|
+
DR GO; GO:0009986; C:cell surface; IEA:Ensembl.
|
352
|
+
DR GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB.
|
353
|
+
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
|
354
|
+
DR GO; GO:0016020; C:membrane; TAS:ProtInc.
|
355
|
+
DR GO; GO:0005634; C:nucleus; IEA:Ensembl.
|
356
|
+
DR GO; GO:0005886; C:plasma membrane; IDA:HPA.
|
357
|
+
DR GO; GO:0030667; C:secretory granule membrane; IEA:Ensembl.
|
358
|
+
DR GO; GO:0042802; F:identical protein binding; IEA:Ensembl.
|
359
|
+
DR GO; GO:0050135; F:NAD(P)+ nucleosidase activity; IEA:UniProtKB-EC.
|
360
|
+
DR GO; GO:0003953; F:NAD+ nucleosidase activity; IBA:GO_Central.
|
361
|
+
DR GO; GO:0061809; F:NAD+ nucleotidase, cyclic ADP-ribose generating; IEA:UniProtKB-EC.
|
362
|
+
DR GO; GO:0016849; F:phosphorus-oxygen lyase activity; IBA:GO_Central.
|
363
|
+
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
|
364
|
+
DR GO; GO:0097190; P:apoptotic signaling pathway; TAS:ProtInc.
|
365
|
+
DR GO; GO:0014824; P:artery smooth muscle contraction; IEA:Ensembl.
|
366
|
+
DR GO; GO:0042100; P:B cell proliferation; IEA:Ensembl.
|
367
|
+
DR GO; GO:0050853; P:B cell receptor signaling pathway; IMP:UniProtKB.
|
368
|
+
DR GO; GO:0007565; P:female pregnancy; IEA:Ensembl.
|
369
|
+
DR GO; GO:0060292; P:long-term synaptic depression; IEA:Ensembl.
|
370
|
+
DR GO; GO:0019674; P:NAD metabolic process; TAS:Reactome.
|
371
|
+
DR GO; GO:0043066; P:negative regulation of apoptotic process; IMP:UniProtKB.
|
372
|
+
DR GO; GO:0045779; P:negative regulation of bone resorption; IEA:Ensembl.
|
373
|
+
DR GO; GO:0010977; P:negative regulation of neuron projection development; IEA:Ensembl.
|
374
|
+
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:UniProtKB.
|
375
|
+
DR GO; GO:0030890; P:positive regulation of B cell proliferation; IMP:UniProtKB.
|
376
|
+
DR GO; GO:0030307; P:positive regulation of cell growth; IEA:Ensembl.
|
377
|
+
DR GO; GO:0007204; P:positive regulation of cytosolic calcium ion concentration; IEA:Ensembl.
|
378
|
+
DR GO; GO:0032024; P:positive regulation of insulin secretion; IEA:Ensembl.
|
379
|
+
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:UniProtKB.
|
380
|
+
DR GO; GO:0045907; P:positive regulation of vasoconstriction; IEA:Ensembl.
|
381
|
+
DR GO; GO:0032355; P:response to estradiol; IEA:Ensembl.
|
382
|
+
DR GO; GO:0033194; P:response to hydroperoxide; IEA:Ensembl.
|
383
|
+
DR GO; GO:0001666; P:response to hypoxia; IEA:Ensembl.
|
384
|
+
DR GO; GO:0070555; P:response to interleukin-1; IEA:Ensembl.
|
385
|
+
DR GO; GO:0032570; P:response to progesterone; IEA:Ensembl.
|
386
|
+
DR GO; GO:0032526; P:response to retinoic acid; IEA:Ensembl.
|
387
|
+
DR GO; GO:0009410; P:response to xenobiotic stimulus; IMP:UniProtKB.
|
388
|
+
DR GO; GO:0007165; P:signal transduction; NAS:ProtInc.
|
389
|
+
DR CDD; cd04759; Rib_hydrolase; 1.
|
390
|
+
DR InterPro; IPR003193; ADP-ribosyl_cyclase.
|
391
|
+
DR InterPro; IPR033567; CD38.
|
392
|
+
DR PANTHER; PTHR10912; PTHR10912; 1.
|
393
|
+
DR PANTHER; PTHR10912:SF5; PTHR10912:SF5; 1.
|
394
|
+
DR Pfam; PF02267; Rib_hydrolayse; 1.
|
395
|
+
PE 1: Evidence at protein level;
|
396
|
+
KW 3D-structure; Alternative splicing; Diabetes mellitus; Disulfide bond;
|
397
|
+
KW Glycoprotein; Hydrolase; Membrane; NAD; NADP; Receptor; Reference proteome;
|
398
|
+
KW Signal-anchor; Transferase; Transmembrane; Transmembrane helix.
|
399
|
+
FT CHAIN 1..300
|
400
|
+
FT /note="ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1"
|
401
|
+
FT /id="PRO_0000144066"
|
402
|
+
FT TOPO_DOM 1..21
|
403
|
+
FT /note="Cytoplasmic"
|
404
|
+
FT /evidence="ECO:0000255"
|
405
|
+
FT TRANSMEM 22..42
|
406
|
+
FT /note="Helical; Signal-anchor for type II membrane protein"
|
407
|
+
FT /evidence="ECO:0000255"
|
408
|
+
FT TOPO_DOM 43..300
|
409
|
+
FT /note="Extracellular"
|
410
|
+
FT /evidence="ECO:0000255"
|
411
|
+
FT ACT_SITE 119
|
412
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
413
|
+
FT ACT_SITE 201
|
414
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
415
|
+
FT CARBOHYD 100
|
416
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
417
|
+
FT /evidence="ECO:0000269|PubMed:19159218"
|
418
|
+
FT CARBOHYD 164
|
419
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
420
|
+
FT /evidence="ECO:0000255"
|
421
|
+
FT CARBOHYD 209
|
422
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
423
|
+
FT /evidence="ECO:0000269|PubMed:19159218"
|
424
|
+
FT CARBOHYD 219
|
425
|
+
FT /note="N-linked (GlcNAc...) asparagine"
|
426
|
+
FT /evidence="ECO:0000269|PubMed:19159218,
|
427
|
+
FT ECO:0000269|PubMed:19349973"
|
428
|
+
FT DISULFID 67..82
|
429
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
430
|
+
FT DISULFID 99..180
|
431
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
432
|
+
FT DISULFID 160..173
|
433
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
434
|
+
FT DISULFID 254..275
|
435
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
436
|
+
FT DISULFID 287..296
|
437
|
+
FT /evidence="ECO:0000269|PubMed:16154090"
|
438
|
+
FT VAR_SEQ 122
|
439
|
+
FT /note="I -> K (in isoform 2)"
|
440
|
+
FT /evidence="ECO:0000303|PubMed:9074508"
|
441
|
+
FT /id="VSP_000707"
|
442
|
+
FT VAR_SEQ 123..300
|
443
|
+
FT /note="Missing (in isoform 2)"
|
444
|
+
FT /evidence="ECO:0000303|PubMed:9074508"
|
445
|
+
FT /id="VSP_000708"
|
446
|
+
FT VARIANT 140
|
447
|
+
FT /note="R -> W (seems to contribute to the development of
|
448
|
+
FT type II diabetes; 50% reduction in activity;
|
449
|
+
FT dbSNP:rs1800561)"
|
450
|
+
FT /evidence="ECO:0000269|PubMed:9754820"
|
451
|
+
FT /id="VAR_001323"
|
452
|
+
FT MUTAGEN 119
|
453
|
+
FT /note="C->K: Loss of cADPr hydrolase activity."
|
454
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
455
|
+
FT MUTAGEN 119
|
456
|
+
FT /note="C->R,E,A: Loss of cADPr hydrolase and ADP-ribosyl
|
457
|
+
FT cyclase activity."
|
458
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
459
|
+
FT MUTAGEN 160
|
460
|
+
FT /note="C->A: Loss of cADPr hydrolase and ADP-ribosyl
|
461
|
+
FT cyclase activity."
|
462
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
463
|
+
FT MUTAGEN 173
|
464
|
+
FT /note="C->A: Loss of cADPr hydrolase and ADP-ribosyl
|
465
|
+
FT cyclase activity."
|
466
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
467
|
+
FT MUTAGEN 201
|
468
|
+
FT /note="C->D,K,A: Loss of cADPr hydrolase and ADP-ribosyl
|
469
|
+
FT cyclase activity."
|
470
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
471
|
+
FT MUTAGEN 201
|
472
|
+
FT /note="C->E: Loss of cADPr hydrolase activity."
|
473
|
+
FT /evidence="ECO:0000269|PubMed:7961800"
|
474
|
+
FT CONFLICT 49
|
475
|
+
FT /note="Q -> T (in Ref. 1; AAA68482)"
|
476
|
+
FT /evidence="ECO:0000305"
|
477
|
+
FT STRAND 51..53
|
478
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
479
|
+
FT HELIX 59..73
|
480
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
481
|
+
FT HELIX 75..77
|
482
|
+
FT /evidence="ECO:0007829|PDB:2O3S"
|
483
|
+
FT HELIX 82..93
|
484
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
485
|
+
FT STRAND 94..96
|
486
|
+
FT /evidence="ECO:0007829|PDB:3RAJ"
|
487
|
+
FT HELIX 98..100
|
488
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
489
|
+
FT HELIX 103..106
|
490
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
491
|
+
FT HELIX 107..112
|
492
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
493
|
+
FT HELIX 119..121
|
494
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
495
|
+
FT STRAND 122..127
|
496
|
+
FT /evidence="ECO:0007829|PDB:2O3S"
|
497
|
+
FT STRAND 132..134
|
498
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
499
|
+
FT HELIX 136..141
|
500
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
501
|
+
FT STRAND 142..144
|
502
|
+
FT /evidence="ECO:0007829|PDB:3RAJ"
|
503
|
+
FT HELIX 145..147
|
504
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
505
|
+
FT HELIX 149..154
|
506
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
507
|
+
FT STRAND 165..167
|
508
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
509
|
+
FT STRAND 171..173
|
510
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
511
|
+
FT TURN 176..179
|
512
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
513
|
+
FT STRAND 181..183
|
514
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
515
|
+
FT HELIX 184..199
|
516
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
517
|
+
FT STRAND 202..209
|
518
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
519
|
+
FT STRAND 212..216
|
520
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
521
|
+
FT STRAND 218..220
|
522
|
+
FT /evidence="ECO:0007829|PDB:2EF1"
|
523
|
+
FT HELIX 221..224
|
524
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
525
|
+
FT HELIX 227..229
|
526
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
527
|
+
FT TURN 232..234
|
528
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
529
|
+
FT STRAND 235..243
|
530
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
531
|
+
FT STRAND 246..249
|
532
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
533
|
+
FT HELIX 253..255
|
534
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
535
|
+
FT HELIX 257..268
|
536
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
537
|
+
FT STRAND 272..278
|
538
|
+
FT /evidence="ECO:0007829|PDB:3F6Y"
|
539
|
+
FT HELIX 281..289
|
540
|
+
FT /evidence="ECO:0007829|PDB:2O3S"
|
541
|
+
FT TURN 291..293
|
542
|
+
FT /evidence="ECO:0007829|PDB:3DZG"
|
543
|
+
FT HELIX 294..296
|
544
|
+
FT /evidence="ECO:0007829|PDB:5F21"
|
545
|
+
SQ SEQUENCE 300 AA; 34328 MW; 47BBE38C3DE3E6AA CRC64;
|
546
|
+
MANCEFSPVS GDKPCCRLSR RAQLCLGVSI LVLILVVVLA VVVPRWRQQW SGPGTTKRFP
|
547
|
+
ETVLARCVKY TEIHPEMRHV DCQSVWDAFK GAFISKHPCN ITEEDYQPLM KLGTQTVPCN
|
548
|
+
KILLWSRIKD LAHQFTQVQR DMFTLEDTLL GYLADDLTWC GEFNTSKINY QSCPDWRKDC
|
549
|
+
SNNPVSVFWK TVSRRFAEAA CDVVHVMLNG SRSKIFDKNS TFGSVEVHNL QPEKVQTLEA
|
550
|
+
WVIHGGREDS RDLCQDPTIK ELESIISKRN IQFSCKNIYR PDKFLQCVKN PEDSSCTSEI
|
551
|
+
//
|