bio-velvet_underground 0.3.0 → 0.3.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
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-  data.tar.gz: e36bd5e26e2f89d2f5917e5333e4420d0817e180
+  metadata.gz: 2e8adc5d69d8e5f93750542060ccee72e73cd88f
+  data.tar.gz: abc36493983fbc5cd170c8f1a1262027bfd4a5d5
 SHA512:
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+  data.tar.gz: 1155ecd114931d692520692d30c7e4f69672600eb310fcd7221fd873edf04876f2835014f90055abe4a4f0bd889862818472ba61d4b15f525940f00e256077b9

data/VERSION

@@ -1 +1 @@
-0.3.0
+0.3.1

data/ext/mkrf_conf.rb

@@ -27,7 +27,7 @@ require File.join(File.dirname(__FILE__), "../lib/bio-velvet_underground/constan
 
 task :compile do
   cd(File.join(File.dirname(__FILE__),'src')) do
-    case Config::CONFIG['host_os']
+    case RbConfig::CONFIG['host_os']
       when /linux/
 
         # Create library with default install params

data/ext/src/Makefile

@@ -3,8 +3,8 @@ CFLAGS = -Wall
 DEBUG = -g
 LIBS = -lm
 OPT = -O3
-MAXKMERLENGTH?=31
-CATEGORIES?=2
+MAXKMERLENGTH=31
+CATEGORIES=2
 DEF = -D MAXKMERLENGTH=$(MAXKMERLENGTH) -D CATEGORIES=$(CATEGORIES)
 PDFLATEX_VERSION := $(shell pdflatex --version 2> /dev/null)
 

data/ext/src/src/scaffold.h

@@ -18,7 +18,7 @@ Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
     Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
 
 */
-#ifndef _SCAFFOLD_H_
+#ifndef _SSCAFFOLD_H_
 #define _SCAFFOLD_H_
 
 typedef struct connection_st Connection;

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: bio-velvet_underground
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.3.1
 platform: ruby
 authors:
 - Ben Woodcroft
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-01-09 00:00:00.000000000 Z
+date: 2016-08-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: ffi
@@ -256,6 +256,7 @@ files:
 - ext/src/third-party/zlib-1.2.3/Makefile.in
 - ext/src/third-party/zlib-1.2.3/README
 - ext/src/third-party/zlib-1.2.3/adler32.c
+- ext/src/third-party/zlib-1.2.3/adler32.o
 - ext/src/third-party/zlib-1.2.3/algorithm.txt
 - ext/src/third-party/zlib-1.2.3/amiga/Makefile.pup
 - ext/src/third-party/zlib-1.2.3/amiga/Makefile.sas
@@ -264,6 +265,7 @@ files:
 - ext/src/third-party/zlib-1.2.3/as400/readme.txt
 - ext/src/third-party/zlib-1.2.3/as400/zlib.inc
 - ext/src/third-party/zlib-1.2.3/compress.c
+- ext/src/third-party/zlib-1.2.3/compress.o
 - ext/src/third-party/zlib-1.2.3/configure
 - ext/src/third-party/zlib-1.2.3/contrib/README.contrib
 - ext/src/third-party/zlib-1.2.3/contrib/ada/buffer_demo.adb
@@ -391,9 +393,12 @@ files:
 - ext/src/third-party/zlib-1.2.3/contrib/vstudio/vc8/zlibvc.vcproj
 - ext/src/third-party/zlib-1.2.3/crc32.c
 - ext/src/third-party/zlib-1.2.3/crc32.h
+- ext/src/third-party/zlib-1.2.3/crc32.o
 - ext/src/third-party/zlib-1.2.3/deflate.c
 - ext/src/third-party/zlib-1.2.3/deflate.h
+- ext/src/third-party/zlib-1.2.3/deflate.o
 - ext/src/third-party/zlib-1.2.3/example.c
+- ext/src/third-party/zlib-1.2.3/example.o
 - ext/src/third-party/zlib-1.2.3/examples/README.examples
 - ext/src/third-party/zlib-1.2.3/examples/fitblk.c
 - ext/src/third-party/zlib-1.2.3/examples/gun.c
@@ -405,16 +410,22 @@ files:
 - ext/src/third-party/zlib-1.2.3/examples/zpipe.c
 - ext/src/third-party/zlib-1.2.3/examples/zran.c
 - ext/src/third-party/zlib-1.2.3/gzio.c
+- ext/src/third-party/zlib-1.2.3/gzio.o
 - ext/src/third-party/zlib-1.2.3/infback.c
+- ext/src/third-party/zlib-1.2.3/infback.o
 - ext/src/third-party/zlib-1.2.3/inffast.c
 - ext/src/third-party/zlib-1.2.3/inffast.h
+- ext/src/third-party/zlib-1.2.3/inffast.o
 - ext/src/third-party/zlib-1.2.3/inffixed.h
 - ext/src/third-party/zlib-1.2.3/inflate.c
 - ext/src/third-party/zlib-1.2.3/inflate.h
+- ext/src/third-party/zlib-1.2.3/inflate.o
 - ext/src/third-party/zlib-1.2.3/inftrees.c
 - ext/src/third-party/zlib-1.2.3/inftrees.h
+- ext/src/third-party/zlib-1.2.3/inftrees.o
 - ext/src/third-party/zlib-1.2.3/make_vms.com
 - ext/src/third-party/zlib-1.2.3/minigzip.c
+- ext/src/third-party/zlib-1.2.3/minigzip.o
 - ext/src/third-party/zlib-1.2.3/msdos/Makefile.bor
 - ext/src/third-party/zlib-1.2.3/msdos/Makefile.dj2
 - ext/src/third-party/zlib-1.2.3/msdos/Makefile.emx
@@ -436,7 +447,9 @@ files:
 - ext/src/third-party/zlib-1.2.3/qnx/package.qpg
 - ext/src/third-party/zlib-1.2.3/trees.c
 - ext/src/third-party/zlib-1.2.3/trees.h
+- ext/src/third-party/zlib-1.2.3/trees.o
 - ext/src/third-party/zlib-1.2.3/uncompr.c
+- ext/src/third-party/zlib-1.2.3/uncompr.o
 - ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt
 - ext/src/third-party/zlib-1.2.3/win32/Makefile.bor
 - ext/src/third-party/zlib-1.2.3/win32/Makefile.emx
@@ -451,6 +464,7 @@ files:
 - ext/src/third-party/zlib-1.2.3/zlib.h
 - ext/src/third-party/zlib-1.2.3/zutil.c
 - ext/src/third-party/zlib-1.2.3/zutil.h
+- ext/src/third-party/zlib-1.2.3/zutil.o
 - lib/bio-velvet_underground.rb
 - lib/bio-velvet_underground/binary_sequence_store.rb
 - lib/bio-velvet_underground/constants.rb
@@ -498,7 +512,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.2.2
+rubygems_version: 2.5.1
 signing_key: 
 specification_version: 4
 summary: Bindings to some internals of the velvet assembler