bio-vcf 0.8.1 → 0.9.5

data/ragel/generate.sh

@@ -0,0 +1,8 @@
+#! /bin/bash
+
+ragel -R gen_vcfheaderline_parser.rl 
+[ $? -ne 0 ] && exit 1
+
+ruby gen_vcfheaderline_parser.rb
+
+cp gen_vcfheaderline_parser.rb ../lib/bio-vcf/vcfheader_line.rb

data/template/vcf2json.erb

@@ -1,20 +1,20 @@
 =HEADER
 <% require 'json' %>
-[
-  { "HEADER": {
-    "options":  <%= options.to_h.to_json %>,
-    "files":    <%= ARGV %>,
-    "version":  "<%= BIOVCF_VERSION %>"
-  },
-
-=BODY
-
 {
-  "seq:chr": "<%= rec.chrom %>" ,
-  "seq:pos": <%= rec.pos %> ,
-  "seq:ref": "<%= rec.ref %>" ,
-  "seq:alt": "<%= rec.alt[0] %>" ,
-  "dp":      <%= rec.info.dp %> ,
-},
+    "HEADER": {
+	"options": <%= options.to_h.to_json %>,
+	"files": <%= ARGV %>,
+	"version": "<%= BIOVCF_VERSION %>"
+    },
+    "BODY": [
+=BODY
+	{
+	    "seq:chr": "<%= rec.chrom %>",
+	    "seq:pos": <%= rec.pos %>,
+	    "seq:ref": "<%= rec.ref %>",
+	    "seq:alt": "<%= rec.alt[0] %>",
+	    "dp":      <%= rec.info.dp %>
+	},
 =FOOTER
-]
+    ]
+}

data/template/vcf2json_full_header.erb

@@ -0,0 +1,22 @@
+=HEADER
+<% require 'json' %>
+{
+    "HEADER": {
+	"options":  <%= options.to_h.to_json %>,
+	"files":    <%= ARGV %>,
+	"version":  "<%= BIOVCF_VERSION %>"
+    },
+    "COLUMNS": <%= header.column_names.to_json %>,
+    "META": <%= header.meta.to_json %>,
+    "BODY": [
+=BODY
+	{
+	    "seq:chr": "<%= rec.chrom %>" ,
+	    "seq:pos": <%= rec.pos %> ,
+	    "seq:ref": "<%= rec.ref %>" ,
+	    "seq:alt": "<%= rec.alt[0] %>"
+	    <% if rec.info.dp %> , "dp": <%= rec.info.dp %> <% end %>
+	},
+=FOOTER
+    ]
+}

data/template/vcf2json_use_meta.erb

@@ -0,0 +1,41 @@
+=HEADER
+<% require 'json' %>
+{
+    "HEADER": {
+	"options":<%= options.to_h.to_json %>,
+	"files": <%= ARGV %>,
+	"version": "<%= BIOVCF_VERSION %>"
+    },
+    "COLUMNS": <%= header.column_names.to_json %>,
+    "META": <%= header.meta.to_json %>,
+    "BODY": [
+=BODY
+	<% sample_num = 0
+	sample_name = nil
+	sample_size = header.samples.size
+	%>
+	{
+	    "seq:chr": "<%= rec.chrom %>" ,
+	    "seq:pos": <%= rec.pos %> ,
+	    "seq:ref": "<%= rec.ref %>" ,
+	    "seq:alt": "<%= rec.alt[0] %>"
+	    <% if rec.info.dp %> , "dp": <%= rec.info.dp %> <% end %>,
+	    "samples" : {
+		<% rec.each_sample do |s| %>
+		<% if not s.empty? 
+		sample_name = header.samples[sample_num]
+		%>
+		<%= (sample_num!=0 ? "," : "" ) %>
+		<% sample_num += 1%>
+		"<%= sample_name %>": {
+		    <% header.meta['FORMAT'].each_key do |k| %>
+		    "<%= k %>": <%= s[k].to_json %><%= (k==header.meta['FORMAT'].keys.last ? "" : "," ) %>
+		    <% end %>
+		}
+		<% end %>
+		<% end %>
+	    }
+	},
+=FOOTER
+    ]
+}

data/test/data/input/empty.vcf

@@ -0,0 +1,2 @@
+##fileformat=VCFv4.0
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO

data/test/data/input/gatk_exome.vcf

@@ -0,0 +1,237 @@
+##fileformat=VCFv4.1
+##FILTER=<ID=HaplotypeScoreHigh,Description="HaplotypeScore > 13.0">
+##FILTER=<ID=LowQual,Description="Low quality">
+##FILTER=<ID=LowQualityDepth,Description="QD < 2.0">
+##FILTER=<ID=MQRankSumLow,Description="MQRankSum < -12.5">
+##FILTER=<ID=MappingQuality,Description="MQ < 40.0">
+##FILTER=<ID=ReadPosRankSumLow,Description="ReadPosRankSum < -20.0">
+##FILTER=<ID=SnpCluster,Description="SNPs found in clusters">
+##FILTER=<ID=StrandBias,Description="FS > 200.0">
+##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine=<ID=CombineVariants,Version=3.2-2-gec30cee,Date="Thu Oct 30 13:41:59 CET 2014",Epoch=1414672919266,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=/hpc/cog_bioinf/data/robert/testIAP/testSubsetExome/tmp/testSubsetExome.filtered_snps.vcf)]), (RodBindingCollection [(RodBinding name=variant2 source=/hpc/cog_bioinf/data/robert/testIAP/testSubsetExome/tmp/testSubsetExome.filtered_indels.vcf)])] out=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub genotypemergeoption=UNSORTED filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##GATKCommandLine=<ID=HaplotypeCaller,Version=3.2-2-gec30cee,Date="Thu Oct 30 13:37:05 CET 2014",Epoch=1414672625371,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[/hpc/cog_bioinf/data/robert/testIAP/testSubsetExome/CONTROLP26/mapping/CONTROLP26_dedup.realigned.recalibrated.bam, /hpc/cog_bioinf/data/robert/testIAP/testSubsetExome/CONTROLP25/mapping/CONTROLP25_dedup.realigned.recalibrated.bam] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=[/hpc/cog_bioinf/data/robert/testIAP/testSubsetExome/tmp/.queue/scatterGather/HaplotypeCaller-1-sg/temp_01_of_12/scatter.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false out=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.gatk.engine.io.stubs.VariantContextWriterStub likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN graphOutput=null bamOutput=null bam_compression=null disable_bam_indexing=null generate_md5=null simplifyBAM=null bamWriterType=CALLED_HAPLOTYPES dbsnp=(RodBinding name=dbsnp source=/hpc/cog_bioinf/common_scripts/GATK_v2.7/bundle/dbsnp_137.b37.vcf) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[ClippingRankSumTest, DepthPerSampleHC] excludeAnnotation=[SpanningDeletions, TandemRepeatAnnotator] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=NONE annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=15.0 max_alternate_alleles=6 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=EXACT_INDEPENDENT exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=false kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingTails=false consensus=false GVCFGQBands=[5, 20, 60] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 minPruning=2 gcpHMM=10 includeUmappedReads=false useAllelesTrigger=false phredScaledGlobalReadMismappingRate=45 maxNumHaplotypesInPopulation=128 mergeVariantsViaLD=false pair_hmm_implementation=VECTOR_LOGLESS_CACHING keepRG=null justDetermineActiveRegions=false dontGenotype=false errorCorrectKmers=false debugGraphTransformations=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false allowCyclesInKmerGraphToGeneratePaths=false noFpga=false errorCorrectReads=false kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 pcr_indel_model=CONSERVATIVE activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
+##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
+##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
+##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
+##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
+##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
+##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
+##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
+##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
+##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
+##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
+##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
+##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
+##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
+##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
+##contig=<ID=1,length=249250621>
+##contig=<ID=2,length=243199373>
+##contig=<ID=3,length=198022430>
+##contig=<ID=4,length=191154276>
+##contig=<ID=5,length=180915260>
+##contig=<ID=6,length=171115067>
+##contig=<ID=7,length=159138663>
+##contig=<ID=8,length=146364022>
+##contig=<ID=9,length=141213431>
+##contig=<ID=10,length=135534747>
+##contig=<ID=11,length=135006516>
+##contig=<ID=12,length=133851895>
+##contig=<ID=13,length=115169878>
+##contig=<ID=14,length=107349540>
+##contig=<ID=15,length=102531392>
+##contig=<ID=16,length=90354753>
+##contig=<ID=17,length=81195210>
+##contig=<ID=18,length=78077248>
+##contig=<ID=19,length=59128983>
+##contig=<ID=20,length=63025520>
+##contig=<ID=21,length=48129895>
+##contig=<ID=22,length=51304566>
+##contig=<ID=X,length=155270560>
+##contig=<ID=Y,length=59373566>
+##contig=<ID=MT,length=16569>
+##reference=file:///hpc/cog_bioinf/GENOMES/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	CONTROLP25	CONTROLP26
+1	22848972	rs61769198	A	C	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	./.
+1	33133968	rs2762904	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	60466814	rs626251	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	60466840	rs35944236	TA	T	18.20	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.10;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:53,6,0
+1	62516683	rs2498982	G	C	114.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,4:4:12:141,12,0
+1	66058513	rs1137101	A	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	95709821	rs259358	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	109806834	rs6698843	C	T	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0	./.
+1	114354942	rs3789604	T	G	47.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:73,6,0
+1	144873962	rs11341221	CT	C	46.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.07;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0	./.
+1	151733335	rs8480	T	G	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0	./.
+1	157516779	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	197479688	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	228005073	rs200455452	C	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	228465370	rs867599	T	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+1	231488524	rs2437150	C	T	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:69,6,0
+1	235505313	rs3841735	A	AT	26.14	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.07;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0	./.
+1	237951451	rs2256242	A	G	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+2	27682309	rs61747073	C	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+2	32667182	rs60197615	G	C	40.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:66,6,0
+2	37406680	rs10205833	C	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+2	112705157	rs3761701	T	C	40.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:66,6,0
+2	113513825	rs6731822	T	C	41.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0	./.
+2	152403960	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+2	207998800	rs2284934	C	T	40.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:66,6,0
+3	8667896	rs355058	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+3	57368861	.	CT	C	32.13	PASS	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.07;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:67,6,0
+3	62478014	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	./.
+3	75787726	rs1962893	G	A	20	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0	./.
+3	75787739	rs141238251	A	T	20	LowQual	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0	./.
+3	101484335	rs2625282	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+3	119434527	rs6438544	G	C	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.45;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:6:70,6,0
+3	119434528	.	C	A	44.17	PASS	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+3	121168152	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	./.
+3	121822564	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+3	122437321	rs7645033	T	C	55.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:9:82,9,0
+3	134225969	rs9827878	T	C	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:72,6,0
+3	139244744	.	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+4	48037926	rs13116684	A	G	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:68,6,0
+4	100572396	.	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+5	32400266	rs1051489	A	G	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:69,6,0
+5	64070617	rs140062546	A	AAATTATGAC	55.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:90,6,0
+5	74442920	rs6888707	A	G	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0	./.
+5	89990324	rs1878878	A	G	32.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=10.74;ReadPosRankSum=0.736;set=Intersection	GT:AD:DP:GQ:PL	0/1:1,2:3:26:59,0,26	./.
+5	102894673	rs34468716	T	C	20.21	LowQual	AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=10.11;ReadPosRankSum=0.736;set=FilteredInAll	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,34	1/1:0,2:2:6:49,6,0
+5	145519821	rs17493851	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+5	178139442	rs1132338	T	G	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+5	178996435	rs11743261	A	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+6	335175	rs2671431	A	T	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+6	12122645	rs6900196	A	G	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+6	29407970	rs2074469	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+6	29523676	rs8337	C	G	47.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:73,6,0
+6	47649222	rs8180544	T	G	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+6	56417282	rs4715630	C	T	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+6	90448092	rs4140446	C	T	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:68,6,0
+6	106992464	rs1799693	A	G	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+6	121632008	rs9372653	T	A	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:68,6,0
+6	138754323	rs2327891	A	G	79.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=6;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.61;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	1/1:0,1:1:3:35,3,0
+6	159188128	rs2242318	A	G	74.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:9:101,9,0
+6	160962177	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+7	6370144	rs1043965	G	A	32.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=6;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=10.74;ReadPosRankSum=-0.736;set=Intersection	GT:AD:DP:GQ:PL	./.	0/1:1,2:3:26:59,0,26
+7	12376811	rs2192828	A	C	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:69,6,0
+7	15584409	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+7	22202052	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+7	25266626	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+7	31617733	rs6945679	T	C	91.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,4:4:12:118,12,0
+7	42976789	rs630191	A	G	58.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=6;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,1:1:3:35,3,0	1/1:0,2:2:6:49,6,0
+7	92762681	rs1029357	A	G	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0	./.
+7	100551840	rs78273697	T	A	64.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.08;set=filterInvariant-variant2	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:90,6,0
+7	100551842	rs75365561	C	T	64.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.08;set=filterInvariant-variant2	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:90,6,0
+7	100551843	rs75524285	T	C	100.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=4;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.63;set=filterInvariant-variant2	GT:AD:DP:GQ:PL	1/1:.:.:3:36,3,0	1/1:0,2:2:6:90,6,0
+7	100551849	rs77242346	A	T	100.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=6;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.61;set=filterInvariant-variant2	GT:AD:DP:GQ:PL	1/1:0,1:1:3:36,3,0	1/1:0,2:2:6:90,6,0
+7	100552644	rs2904850	C	A	39.17	PASS	AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=19.59;ReadPosRankSum=-0.736;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0	0/0:1,0:1:3:0,3,36
+7	100552788	rs73398800	C	T	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+7	100552867	rs73714266	T	C	44.42	PASS	AC=4;AF=1.00;AN=4;DB;DP=4;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,1:1:3:35,3,0	1/1:0,1:1:3:34,3,0
+7	142460335	rs201550522	A	G	20	LowQual;MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:3:45,3,0
+7	142460339	rs200973660	G	A	20	LowQual;MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:3:45,3,0
+7	151970856	rs10454320	T	A	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+7	151970931	rs56850341	G	A	29.18	LowQual;MappingQuality	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=14.59;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:55,6,0	./.
+7	154862621	rs6320	T	A	38.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0	./.
+8	29023297	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+9	390512	rs2297075	C	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+9	21334694	.	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+9	79117556	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+9	86465131	rs58077086	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+9	109687403	rs17723637	A	G	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0	./.
+9	129595895	rs3118994	T	C	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:69,6,0
+10	30728101	rs1042058	T	C	38.17	PASS	AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=19.09;ReadPosRankSum=-0.736;set=Intersection	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,35	1/1:0,2:2:6:67,6,0
+10	45958881	rs2291429	A	G	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:71,6,0
+10	70405855	rs3998860	A	G	79.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,3:3:9:106,9,0	./.
+10	95381773	rs701865	T	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+10	105762591	rs805657	G	A	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0	./.
+10	116013432	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+10	126691605	rs201760950	C	A	20	LowQual;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:3:45,3,0
+10	126691608	rs200173220	C	T	20	LowQual;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:3:45,3,0
+10	126691631	rs3198936	T	A	20	LowQual;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:3:45,3,0
+10	126691634	rs75794788	T	A	20	LowQual;SnpCluster	AC=2;AF=1.00;AN=2;DB;DP=2;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=20.00;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,1:1:3:45,3,0
+11	2929552	rs429886	A	G	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:72,6,0
+11	11373635	rs1056963	C	T	40.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:66,6,0
+11	55872657	rs28681529	A	C	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:71,6,0
+11	63883985	rs614397	T	C	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+11	63885632	rs4379854	A	G	56.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:9:83,9,0
+11	74676794	rs514534	G	C	59.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=6;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,1:1:3:36,3,0	1/1:0,2:2:6:49,6,0
+11	112041128	rs45579043	TTTTGTCCTG	T	55.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:90,6,0
+11	124266912	rs28398895	A	G	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:72,6,0
+11	130064131	.	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+12	2788879	rs1051375	G	A	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	./.
+12	10588581	rs28403159	T	C	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+12	11214360	rs73260771	C	T	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0	./.
+12	22646247	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+12	30823971	rs1054426	A	G	41.17	PASS	AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;ClippingRankSum=0.736;DB;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQ0=0;MQRankSum=-0.736;QD=20.59;ReadPosRankSum=0.736;set=Intersection	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,35	1/1:0,2:2:6:70,6,0
+12	53722128	rs7139272	G	A	40.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0	./.
+12	55820121	rs6581046	C	T	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+12	80889165	rs145970310	T	TTTG	55.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0	./.
+12	82792942	rs10506873	A	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+12	96653501	rs4762144	C	T	56.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:9:83,9,0
+12	123067501	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+13	32913055	rs206075	A	G	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0	./.
+13	46170719	rs142875900	CCCAGATACTCTTCCTCCT	C	55.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=27.57;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0	./.
+13	103514737	rs201185418	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+13	107145463	rs7995379	G	C	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:71,6,0
+14	21469151	rs2234636	T	C	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+14	21831112	rs10146717	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+14	45623122	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+14	57101682	rs913742	A	G	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:71,6,0
+14	70515779	rs61977411	G	A	55.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:9:82,9,0
+14	81610583	rs1991517	G	C	59.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=6;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,1:1:3:36,3,0	1/1:0,2:2:6:49,6,0
+14	88651962	rs17762463	C	T	41.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:67,6,0
+14	105407798	rs4465542	T	C	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0	./.
+15	22368862	rs1835183	G	A	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	./.
+15	44184197	rs112105930	C	T	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:69,6,0
+15	65903398	rs4366668	G	A	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:68,6,0
+15	69728949	rs3825858	A	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	./.
+16	3646215	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+16	11001770	rs34654419	G	T	56.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:9:83,9,0
+16	14340388	.	C	A	20.21	LowQual	AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;ClippingRankSum=0.736;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=10.11;ReadPosRankSum=0.736;set=FilteredInAll	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,37	1/1:0,2:2:6:49,6,0
+16	56436917	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+16	82033612	rs16956174	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+16	88712511	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+17	3632836	rs1716	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+17	8363486	.	C	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	./.
+17	9515777	rs6503235	G	A	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:68,6,0
+18	31324934	rs7232237	A	G	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0	./.
+18	56203447	rs3809979	A	G	83.84	PASS	AC=4;AF=1.00;AN=4;DB;DP=6;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0	1/1:0,1:1:3:37,3,0
+19	3434413	rs2302220	C	G	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+19	6413578	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+19	11221454	rs2738442	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+19	21492062	rs547516	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+19	22952111	rs34726149	A	G	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	./.
+19	33444511	rs80283382	T	C	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0	./.
+19	38378539	rs10422056	G	C	41.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:67,6,0
+19	39915637	rs31727	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+19	48389425	rs11083907	A	G	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:69,6,0
+19	53085659	rs366793	C	T	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+19	53344051	rs112227284	T	C	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+19	53912242	rs10426347	G	A	76.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0	./.
+19	55597421	.	A	G	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+19	57931553	rs10417533	C	T	20.21	LowQual	AC=2;AF=0.500;AN=4;BaseQRankSum=-0.736;ClippingRankSum=-0.736;DB;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=10.11;ReadPosRankSum=0.736;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	0/0:1,0:1:3:0,3,33
+20	1356261	rs6074549	G	C	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0	./.
+20	29625877	rs7266938	G	A	34.17	PASS	AC=2;AF=0.500;AN=4;BaseQRankSum=0.736;ClippingRankSum=-0.736;DB;DP=6;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=46.65;MQ0=0;MQRankSum=-0.736;QD=17.09;ReadPosRankSum=0.736;set=Intersection	GT:AD:DP:GQ:PL	0/0:1,0:1:3:0,3,33	1/1:0,2:2:6:63,6,0
+20	29628431	rs11152458	C	T	42.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=21.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:68,6,0
+20	44839078	.	A	T	44.17	PASS	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:70,6,0
+21	46957794	rs1051266	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+21	47786817	rs2839228	C	G	47.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:73,6,0
+22	22550510	rs2073448	T	G	45.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:71,6,0
+22	22569448	rs5750741	T	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	./.
+22	30771554	rs2015035	T	G	46.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0	./.
+22	36587845	rs5845253	A	ACT	55.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;set=Intersection	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:90,6,0
+22	40800544	rs2235318	C	T	44.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0	./.
+22	41075543	rs133072	A	G	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	./.
+22	43936213	.	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+22	43936228	.	G	T	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+X	55172537	rs1047054	G	A	43.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;set=Intersection	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0	./.
+X	107911706	.	T	C	23.19	LowQual	AC=2;AF=1.00;AN=2;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:49,6,0
+X	134713855	rs2298301	G	A	23.19	LowQual	AC=2;AF=1.00;AN=2;DB;DP=4;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.60;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	./.

data/test/data/input/gatk_wgs.vcf

@@ -0,0 +1,1000 @@
+##fileformat=VCFv4.1
+##FILTER=<ID=HARD_TO_VALIDATE,Description="MQ0 >= 4 && ((MQ0 / (1.0 * DP)) > 0.1)">
+##FILTER=<ID=LowQD,Description="QD < 1.5 ">
+##FILTER=<ID=LowQual,Description="Low quality">
+##FILTER=<ID=LowQual,Description="QUAL > 30.0 && QUAL < 50.0 ">
+##FILTER=<ID=VeryLowQual,Description="QUAL < 30.0 ">
+##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
+##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
+##GATKCommandLine=<ID=UnifiedGenotyper,Version=2.7-2-g6bda569,Date="Wed Oct 09 12:01:28 CEST 2013",Epoch=1381312888392,CommandLineOptions="analysis_type=UnifiedGenotyper input_file=[/home/sge_share_fedor12/BAM/sander/LGR/STE007223/STE007223_dedup_realigned_recalibrated.bam, /home/sge_share_fedor12/BAM/sander/LGR/STE0072Blood/BOXTELBLOOD0072_dedup_realigned_recalibrated.bam, /home/sge_share_fedor12/BAM/sander/LGR/STE007212/STE007212_dedup_realigned_recalibrated.bam, /home/sge_share_fedor12/BAM/sander/LGR/STE007231/STE007231_dedup_realigned_recalibrated.bam] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=[/data/sander/variant_calling/STE0072_multi/.queue/scatterGather/UnifiedGenotyper_ref-1-sg/temp_01_of_24/scatter.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/common_data/references/H_sapiens/GATK_b37_bundle_reference/basespace/human_g1k_v37.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=4 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false genotype_likelihoods_model=SNP pcr_error_rate=1.0E-4 computeSLOD=false annotateNDA=false pair_hmm_implementation=LOGLESS_CACHING min_base_quality_score=17 max_deletion_fraction=0.05 allSitePLs=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false output_mode=EMIT_ALL_CONFIDENT_SITES heterozygosity=0.001 indel_heterozygosity=1.25E-4 genotyping_mode=DISCOVERY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=6 input_prior=[] contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=EXACT_INDEPENDENT exactcallslog=null dbsnp=(RodBinding name= source=UNBOUND) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub onlyEmitSamples=[] debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
+##GATKCommandLine=<ID=VariantFiltration,Version=2.7-2-g6bda569,Date="Tue Jan 14 09:12:39 CET 2014",Epoch=1389687159170,CommandLineOptions="analysis_type=VariantFiltration input_file=[] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data_fedor13/common_data/references/H_sapiens/GATK_b37_bundle_reference/basespace/human_g1k_v37.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/data_fedor13/sander/variant_calling/STE0072_multi/STE0072_multi_snps.vcf) mask=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub filterExpression=[MQ0 >= 4 && ((MQ0 / (1.0 * DP)) > 0.1), QUAL < 30.0 , QUAL > 30.0 && QUAL < 50.0 , QD < 1.5 ] filterName=[HARD_TO_VALIDATE, VeryLowQual, LowQual, LowQD] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=0 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
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+##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
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+##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
+##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
+##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
+##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
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+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	BOXTELBLOOD0072	STE007212	STE007223	STE007231
+1	10291	.	C	T	169.20	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.946;DP=905;Dels=0.00;FS=4.440;HaplotypeScore=72.3757;MLEAC=3;MLEAF=0.375;MQ=20.83;MQ0=368;MQRankSum=-0.438;QD=0.25;ReadPosRankSum=-3.435	GT:AD:DP:GQ:PL	0/0:219,12:238:19:0,19,348	0/1:202,24:226:99:111,0,453	0/1:189,19:213:13:13,0,419	0/1:192,30:225:79:79,0,172
+1	10303	.	C	T	89.99	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.160;DP=980;Dels=0.00;FS=11.007;HaplotypeScore=93.8187;MLEAC=3;MLEAF=0.375;MQ=20.36;MQ0=417;MQRankSum=0.361;QD=0.12;ReadPosRankSum=2.586	GT:AD:DP:GQ:PL	0/0:231,12:250:53:0,53,640	0/1:218,26:245:53:53,0,444	0/1:209,23:234:54:54,0,421	0/1:221,24:247:17:17,0,267
+1	10309	.	C	T	82.17	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.075;DP=975;Dels=0.00;FS=1.641;HaplotypeScore=93.7235;MLEAC=3;MLEAF=0.375;MQ=20.10;MQ0=426;MQRankSum=-0.585;QD=0.11;ReadPosRankSum=0.507	GT:AD:DP:GQ:PL	0/0:223,20:248:42:0,42,404	0/1:222,23:247:12:12,0,543	0/1:207,21:231:56:56,0,369	0/1:219,27:248:48:48,0,208
+1	10321	.	C	T	97.17	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.176;DP=974;Dels=0.01;FS=1.382;HaplotypeScore=138.5280;MLEAC=3;MLEAF=0.375;MQ=19.93;MQ0=431;MQRankSum=-1.181;QD=0.13;ReadPosRankSum=0.841	GT:AD:DP:GQ:PL	0/0:232,14:248:27:0,27,454	0/1:222,24:247:17:17,0,517	0/1:203,22:226:14:14,0,536	0/1:206,32:241:99:100,0,352
+1	10327	.	T	C	410.69	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.510;DP=971;Dels=0.03;FS=0.000;HaplotypeScore=162.8983;MLEAC=3;MLEAF=0.375;MQ=19.64;MQ0=442;MQRankSum=1.174;QD=0.56;ReadPosRankSum=2.600	GT:AD:DP:GQ:PL	0/1:170,59:233:99:191,0,217	0/1:159,71:232:28:28,0,528	0/0:155,68:225:5:0,5,548	0/1:166,67:234:99:224,0,352
+1	10583	.	G	A	104.97	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.066;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.2479;MLEAC=4;MLEAF=0.500;MQ=38.29;MQ0=0;MQRankSum=-0.025;QD=1.61;ReadPosRankSum=-0.262	GT:AD:DP:GQ:PL	0/1:17,3:20:22:22,0,349	0/1:15,3:18:38:38,0,412	0/1:10,4:14:51:51,0,213	0/1:11,2:13:26:26,0,271
+1	10694	.	C	G	31.59	HARD_TO_VALIDATE;LowQual	AC=4;AF=1.00;AN=4;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=19.63;MQ0=4;QD=7.90	GT:AD:DP:GQ:PL	1/1:0,2:2:3:33,3,0	1/1:0,2:2:3:22,3,0	./.	./.
+1	12783	.	G	A	2537.43	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=6.111;DP=360;Dels=0.00;FS=0.000;HaplotypeScore=1.4766;MLEAC=5;MLEAF=0.625;MQ=14.40;MQ0=231;MQRankSum=-2.807;QD=7.05;ReadPosRankSum=-0.956	GT:AD:DP:GQ:PL	0/1:18,79:97:48:677,0,48	1/1:22,69:91:11:626,11,0	0/1:17,56:74:33:575,0,33	0/1:20,77:97:42:693,0,42
+1	13110	.	G	A	146.12	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.768;DP=235;Dels=0.00;FS=7.537;HaplotypeScore=7.8627;MLEAC=3;MLEAF=0.375;MQ=23.13;MQ0=62;MQRankSum=-3.525;QD=0.84;ReadPosRankSum=1.463	GT:AD:DP:GQ:PL	0/1:54,5:59:1:1,0,884	0/1:53,13:66:95:95,0,911	0/1:39,9:48:78:78,0,740	0/0:54,8:62:0:0,0,911
+1	13116	.	T	G	1695.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.956;DP=205;Dels=0.00;FS=109.365;HaplotypeScore=6.7694;MLEAC=4;MLEAF=0.500;MQ=22.66;MQ0=60;MQRankSum=-8.991;QD=8.27;ReadPosRankSum=-0.018	GT:AD:DP:GQ:PL	0/1:19,28:47:99:337,0,294	0/1:19,43:62:99:632,0,259	0/1:22,24:46:99:288,0,425	0/1:15,35:50:99:471,0,283
+1	13118	.	A	G	1589.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.916;DP=197;Dels=0.00;FS=98.775;HaplotypeScore=6.2308;MLEAC=4;MLEAF=0.500;MQ=22.10;MQ0=60;MQRankSum=-8.206;QD=8.07;ReadPosRankSum=-0.222	GT:AD:DP:GQ:PL	0/1:18,27:45:99:340,0,276	0/1:18,38:56:99:552,0,245	0/1:21,23:44:99:263,0,405	0/1:15,36:51:99:467,0,285
+1	13302	.	C	T	458.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=4.082;DP=189;Dels=0.00;FS=30.039;HaplotypeScore=1.0973;MLEAC=4;MLEAF=0.500;MQ=23.65;MQ0=79;MQRankSum=-8.041;QD=2.43;ReadPosRankSum=-4.139	GT:AD:DP:GQ:PL	0/1:22,31:53:99:118,0,498	0/1:19,25:44:99:161,0,400	0/1:24,18:42:32:32,0,514	0/1:20,28:48:99:180,0,337
+1	13649	.	G	C	93.17	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.681;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=22.7737;MLEAC=2;MLEAF=0.250;MQ=14.02;MQ0=124;MQRankSum=0.981;QD=0.80;ReadPosRankSum=1.571	GT:AD:DP:GQ:PL	0/1:60,9:69:58:58,0,549	0/1:41,7:48:69:69,0,232	0/0:47,5:53:51:0,51,490	0/0:50,4:54:12:0,12,335
+1	13878	.	G	C	79.98	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.476;DP=412;Dels=0.00;FS=11.677;HaplotypeScore=0.9186;MLEAC=2;MLEAF=0.250;MQ=12.15;MQ0=266;MQRankSum=2.129;QD=0.39;ReadPosRankSum=0.958	GT:AD:DP:GQ:PL	0/0:81,14:95:55:0,55,707	0/1:93,11:104:20:20,0,438	0/1:89,13:102:94:94,0,432	0/0:104,7:111:55:0,55,722
+1	14354	.	C	A	31.58	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=1.468;DP=285;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=4.82;MQ0=273;MQRankSum=0.600;QD=0.16;ReadPosRankSum=-0.289	GT:AD:DP:GQ:PL	0/0:75,14:89:3:0,3,30	0/1:56,12:68:18:18,0,71	0/1:51,13:64:21:21,0,48	0/1:51,13:64:22:24,0,22
+1	14522	.	G	A	68.10	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=3.152;DP=209;Dels=0.00;FS=14.099;HaplotypeScore=1.3722;MLEAC=3;MLEAF=0.375;MQ=14.74;MQ0=136;MQRankSum=-0.235;QD=0.42;ReadPosRankSum=4.774	GT:AD:DP:GQ:PL	0/0:40,6:46:18:0,18,202	0/1:48,12:60:17:17,0,283	0/1:37,8:45:32:32,0,172	0/1:47,11:58:53:53,0,410
+1	14542	.	A	G	54.12	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.506;DP=229;Dels=0.00;FS=2.344;HaplotypeScore=0.5390;MLEAC=3;MLEAF=0.375;MQ=13.76;MQ0=148;MQRankSum=-0.456;QD=0.30;ReadPosRankSum=2.092	GT:AD:DP:GQ:PL	0/0:44,6:50:27:0,27,305	0/1:57,12:69:5:5,0,416	0/1:40,8:48:26:26,0,236	0/1:51,11:62:56:56,0,390
+1	14673	.	G	C	340.98	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.410;DP=200;Dels=0.00;FS=54.600;HaplotypeScore=3.8518;MLEAC=4;MLEAF=0.500;MQ=21.00;MQ0=79;MQRankSum=0.098;QD=1.70;ReadPosRankSum=1.165	GT:AD:DP:GQ:PL	0/1:38,18:56:99:225,0,426	0/1:34,14:48:99:104,0,506	0/1:29,12:41:24:24,0,496	0/1:41,14:55:20:20,0,549
+1	14699	.	C	G	436.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=6.043;DP=214;Dels=0.00;FS=20.309;HaplotypeScore=1.8510;MLEAC=4;MLEAF=0.500;MQ=22.16;MQ0=63;MQRankSum=-2.196;QD=2.04;ReadPosRankSum=-0.814	GT:AD:DP:GQ:PL	0/1:33,21:54:99:128,0,337	0/1:37,12:49:36:36,0,585	0/1:34,11:45:83:83,0,678	0/1:40,26:66:99:222,0,562
+1	14907	.	A	G	4600.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.701;DP=322;Dels=0.00;FS=16.855;HaplotypeScore=2.9484;MLEAC=4;MLEAF=0.500;MQ=31.50;MQ0=22;MQRankSum=1.772;QD=14.29;ReadPosRankSum=0.119	GT:AD:DP:GQ:PL	0/1:38,53:91:99:1082,0,502	0/1:30,56:86:99:1394,0,463	0/1:19,45:64:99:1016,0,333	0/1:32,49:81:99:1141,0,593
+1	14930	.	A	G	4086.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-7.443;DP=320;Dels=0.00;FS=4.792;HaplotypeScore=3.2020;MLEAC=4;MLEAF=0.500;MQ=33.77;MQ0=7;MQRankSum=0.194;QD=12.77;ReadPosRankSum=1.052	GT:AD:DP:GQ:PL	0/1:32,52:84:99:895,0,580	0/1:26,53:79:99:1135,0,468	0/1:22,47:69:99:934,0,521	0/1:30,58:88:99:1155,0,610
+1	15015	.	G	C	256.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.245;DP=287;Dels=0.00;FS=77.878;HaplotypeScore=2.4024;MLEAC=3;MLEAF=0.375;MQ=19.83;MQ0=138;MQRankSum=-1.053;QD=1.19;ReadPosRankSum=5.830	GT:AD:DP:GQ:PL	0/0:66,6:72:63:0,63,651	0/1:64,10:74:90:90,0,720	0/1:53,9:62:99:109,0,568	0/1:64,15:79:92:92,0,797
+1	15045	.	C	T	214.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=3.992;DP=269;Dels=0.00;FS=44.451;HaplotypeScore=0.9104;MLEAC=3;MLEAF=0.375;MQ=15.66;MQ0=145;MQRankSum=3.074;QD=1.04;ReadPosRankSum=0.394	GT:AD:DP:GQ:PL	0/0:58,5:63:54:0,54,505	0/1:64,10:74:94:94,0,674	0/1:50,7:57:64:64,0,489	0/1:61,14:75:91:91,0,491
+1	15118	.	A	G	1625.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.642;DP=304;Dels=0.00;FS=5.636;HaplotypeScore=2.0188;MLEAC=4;MLEAF=0.500;MQ=21.05;MQ0=78;MQRankSum=-0.305;QD=5.35;ReadPosRankSum=-1.493	GT:AD:DP:GQ:PL	0/1:48,23:71:99:406,0,670	0/1:54,24:80:99:461,0,725	0/1:47,28:76:99:464,0,635	0/1:52,25:77:99:327,0,877
+1	15190	.	G	A	655.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=4.541;DP=326;Dels=0.00;FS=14.928;HaplotypeScore=2.2227;MLEAC=4;MLEAF=0.500;MQ=25.88;MQ0=64;MQRankSum=-2.193;QD=2.01;ReadPosRankSum=-0.217	GT:AD:DP:GQ:PL	0/1:71,18:90:99:205,0,1221	0/1:71,15:86:99:165,0,1245	0/1:58,15:73:99:166,0,1069	0/1:59,17:77:99:152,0,1268
+1	15211	.	T	G	4577.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.741;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=2.0978;MLEAC=4;MLEAF=0.500;MQ=26.85;MQ0=55;MQRankSum=0.371;QD=15.06;ReadPosRankSum=-2.341	GT:AD:DP:GQ:PL	0/1:25,54:79:99:1074,0,197	0/1:16,67:83:99:1342,0,113	0/1:14,50:64:99:948,0,184	0/1:23,55:78:99:1246,0,221
+1	15274	.	A	T	2908.09	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.557;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.0034;MLEAC=7;MLEAF=0.875;MQ=22.35;MQ0=66;MQRankSum=0.975;QD=14.26;ReadPosRankSum=0.044	GT:AD:DP:GQ:PL	1/1:0,37:53:81:800,81,0	1/1:0,37:44:75:739,75,0	1/1:0,29:46:69:702,69,0	1/1:1,45:60:74:950,74,0
+1	15484	.	G	A	152.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.783;DP=293;Dels=0.00;FS=9.762;HaplotypeScore=2.0763;MLEAC=3;MLEAF=0.375;MQ=17.27;MQ0=132;MQRankSum=-0.308;QD=0.72;ReadPosRankSum=-0.964	GT:AD:DP:GQ:PL	0/0:75,6:81:87:0,87,844	0/1:65,14:79:68:68,0,905	0/1:48,13:61:67:67,0,525	0/1:61,10:71:52:52,0,737
+1	16014	.	C	T	305.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.480;DP=109;Dels=0.00;FS=46.948;HaplotypeScore=1.5285;MLEAC=4;MLEAF=0.500;MQ=12.96;MQ0=73;MQRankSum=2.235;QD=2.81;ReadPosRankSum=-0.844	GT:AD:DP:GQ:PL	0/1:18,8:26:70:70,0,86	0/1:20,14:34:32:128,0,32	0/1:19,4:23:39:39,0,64	0/1:17,9:26:35:101,0,35
+1	16068	.	T	C	682.66	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=-1.733;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=21.18;MQ0=22;MQRankSum=1.631;QD=12.19;ReadPosRankSum=1.019	GT:AD:DP:GQ:PL	1/1:0,9:9:6:53,6,0	1/1:2,22:24:30:282,30,0	1/1:0,9:9:15:139,15,0	1/1:0,13:14:27:234,27,0
+1	16103	.	T	G	1654.37	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.229;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=24.23;MQ0=34;MQRankSum=1.509;QD=17.23;ReadPosRankSum=-1.285	GT:AD:DP:GQ:PL	1/1:0,16:17:18:201,18,0	1/1:1,38:39:60:617,60,0	1/1:0,19:19:45:472,45,0	1/1:0,21:21:39:390,39,0
+1	16257	.	G	C	1123.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.178;DP=230;Dels=0.00;FS=0.871;HaplotypeScore=2.6943;MLEAC=4;MLEAF=0.500;MQ=27.52;MQ0=50;MQRankSum=1.621;QD=4.89;ReadPosRankSum=0.056	GT:AD:DP:GQ:PL	0/1:46,22:68:99:370,0,794	0/1:31,25:56:99:359,0,605	0/1:37,15:52:99:224,0,663	0/1:40,14:54:99:203,0,799
+1	16288	.	C	G	196.15	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.029;DP=109;Dels=0.00;FS=8.923;HaplotypeScore=1.4846;MLEAC=4;MLEAF=0.500;MQ=21.92;MQ0=35;MQRankSum=-1.274;QD=1.80;ReadPosRankSum=-0.124	GT:AD:DP:GQ:PL	0/1:23,6:29:59:59,0,393	0/1:20,7:27:96:96,0,286	0/1:21,7:28:62:62,0,293	0/1:20,5:25:11:11,0,296
+1	16298	.	C	T	910.39	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.4419;MLEAC=8;MLEAF=1.00;MQ=16.62;MQ0=33;QD=11.52	GT:AD:DP:GQ:PL	1/1:0,18:18:30:273,30,0	1/1:0,21:22:27:249,27,0	1/1:0,18:18:15:142,15,0	1/1:0,21:21:30:272,30,0
+1	16378	.	T	C	3043.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.537;DP=389;Dels=0.00;FS=5.431;HaplotypeScore=1.2797;MLEAC=4;MLEAF=0.500;MQ=17.53;MQ0=197;MQRankSum=-0.836;QD=7.83;ReadPosRankSum=-0.421	GT:AD:DP:GQ:PL	0/1:32,67:99:73:811,0,73	0/1:36,77:113:99:838,0,171	0/1:27,57:85:32:799,0,32	0/1:30,62:92:63:628,0,63
+1	16495	.	G	C	1966.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-9.239;DP=288;Dels=0.00;FS=0.618;HaplotypeScore=10.2366;MLEAC=4;MLEAF=0.500;MQ=26.82;MQ0=47;MQRankSum=-0.369;QD=6.83;ReadPosRankSum=-1.074	GT:AD:DP:GQ:PL	0/1:39,30:69:99:583,0,519	0/1:50,30:80:99:446,0,734	0/1:46,33:79:99:553,0,871	0/1:34,26:60:99:417,0,689
+1	16497	.	A	G	149.01	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.196;DP=282;Dels=0.00;FS=0.000;HaplotypeScore=10.1968;MLEAC=3;MLEAF=0.375;MQ=26.81;MQ0=49;MQRankSum=-3.719;QD=0.69;ReadPosRankSum=-1.428	GT:AD:DP:GQ:PL	0/0:57,8:66:99:0,119,1395	0/1:64,13:77:16:16,0,1187	0/1:63,18:81:99:108,0,1423	0/1:48,10:58:59:59,0,1121
+1	16534	.	C	T	1650.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.115;DP=210;Dels=0.00;FS=2.044;HaplotypeScore=1.1672;MLEAC=4;MLEAF=0.500;MQ=21.39;MQ0=68;MQRankSum=2.751;QD=7.86;ReadPosRankSum=-1.971	GT:AD:DP:GQ:PL	0/1:15,28:43:99:338,0,193	0/1:42,29:71:99:400,0,439	0/1:21,30:51:99:499,0,255	0/1:21,24:45:99:446,0,216
+1	16571	.	G	A	876.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.268;DP=172;Dels=0.00;FS=11.474;HaplotypeScore=3.9389;MLEAC=4;MLEAF=0.500;MQ=14.19;MQ0=97;MQRankSum=2.204;QD=5.10;ReadPosRankSum=0.507	GT:AD:DP:GQ:PL	0/1:21,26:47:68:237,0,68	0/1:26,24:50:99:311,0,176	0/1:16,15:31:99:200,0,141	0/1:29,15:44:74:161,0,74
+1	16580	.	C	G	145.70	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.744;DP=175;Dels=0.00;FS=4.663;HaplotypeScore=3.9389;MLEAC=3;MLEAF=0.375;MQ=13.85;MQ0=104;MQRankSum=-0.051;QD=1.15;ReadPosRankSum=2.218	GT:AD:DP:GQ:PL	0/1:41,7:48:98:98,0,210	0/1:44,7:51:41:41,0,427	0/1:24,4:28:40:40,0,255	0/0:44,4:48:9:0,9,277
+1	16631	.	T	C	44.13	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-3.754;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=0.7033;MLEAC=2;MLEAF=0.250;MQ=13.58;MQ0=127;MQRankSum=-1.439;QD=0.36;ReadPosRankSum=-0.810	GT:AD:DP:GQ:PL	0/1:60,5:65:52:52,0,572	0/1:53,4:57:26:26,0,362	0/0:26,0:26:18:0,18,166	0/0:50,4:54:15:0,15,336
+1	16841	.	G	T	210.13	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.139;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=2.6289;MLEAC=4;MLEAF=0.500;MQ=18.63;MQ0=66;MQRankSum=0.050;QD=1.08;ReadPosRankSum=0.360	GT:AD:DP:GQ:PL	0/1:40,9:49:94:94,0,478	0/1:50,4:54:3:3,0,810	0/1:27,11:38:99:101,0,426	0/1:45,5:50:43:43,0,662
+1	16977	.	G	A	94.08	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.369;DP=366;Dels=0.00;FS=2.642;HaplotypeScore=0.6197;MLEAC=3;MLEAF=0.375;MQ=10.14;MQ0=286;MQRankSum=0.665;QD=0.35;ReadPosRankSum=1.565	GT:AD:DP:GQ:PL	0/0:73,21:94:16:0,16,370	0/1:79,30:109:30:30,0,385	0/1:62,21:83:60:60,0,261	0/1:57,23:80:38:38,0,317
+1	17020	.	G	A	303.73	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.389;DP=375;Dels=0.00;FS=0.848;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=11.92;MQ0=265;MQRankSum=-0.936;QD=0.81;ReadPosRankSum=1.462	GT:AD:DP:GQ:PL	0/1:86,15:102:60:60,0,515	0/1:83,20:103:90:90,0,431	0/1:72,12:84:5:5,0,367	0/1:74,12:86:99:180,0,374
+1	17385	.	G	A	890.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.169;DP=503;Dels=0.00;FS=36.376;HaplotypeScore=5.4092;MLEAC=4;MLEAF=0.500;MQ=14.80;MQ0=324;MQRankSum=3.897;QD=1.77;ReadPosRankSum=-0.810	GT:AD:DP:GQ:PL	0/1:97,22:119:99:105,0,256	0/1:98,32:130:99:297,0,646	0/1:91,30:121:99:370,0,604	0/1:107,25:132:99:151,0,720
+1	17538	.	C	A	880.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.382;DP=312;Dels=0.00;FS=0.000;HaplotypeScore=2.4657;MLEAC=4;MLEAF=0.500;MQ=29.94;MQ0=125;MQRankSum=-0.804;QD=2.82;ReadPosRankSum=-0.094	GT:AD:DP:GQ:PL	0/1:82,12:94:99:237,0,796	0/1:67,19:86:99:400,0,840	0/1:62,13:75:99:179,0,995	0/1:48,9:57:97:97,0,608
+1	17746	.	A	G	590.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-5.079;DP=271;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=4;MLEAF=0.500;MQ=24.30;MQ0=138;MQRankSum=0.374;QD=2.18;ReadPosRankSum=0.811	GT:AD:DP:GQ:PL	0/1:41,15:57:86:86,0,396	0/1:61,21:82:99:212,0,772	0/1:50,21:71:99:127,0,800	0/1:37,22:59:99:198,0,339
+1	19004	.	A	G	151.99	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.201;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=4;MLEAF=0.500;MQ=7.89;MQ0=165;MQRankSum=-0.487;QD=0.79;ReadPosRankSum=-0.580	GT:AD:DP:GQ:PL	0/1:28,24:52:52:52,0,108	0/1:19,33:53:18:42,0,18	0/1:30,16:46:58:58,0,62	0/1:20,22:42:32:32,0,112
+1	19322	.	C	T	106.70	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.834;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=6.75;MQ0=186;MQRankSum=-0.465;QD=0.69;ReadPosRankSum=-0.794	GT:AD:DP:GQ:PL	0/0:53,4:57:9:0,9,79	0/1:54,4:59:41:41,0,44	0/1:42,9:51:54:62,0,54	0/1:39,5:44:37:37,0,90
+1	19355	.	G	A	73.46	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.500;AN=6;BaseQRankSum=1.635;DP=242;Dels=0.00;FS=0.000;HaplotypeScore=0.2217;MLEAC=3;MLEAF=0.500;MQ=4.79;MQ0=230;MQRankSum=1.000;QD=0.37;ReadPosRankSum=0.529	GT:AD:DP:GQ:PL	./.	0/1:70,12:82:36:36,0,89	0/1:50,4:54:21:22,0,21	0/1:50,13:63:18:45,0,18
+1	19391	.	G	A	73.55	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.267;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=0.8725;MLEAC=3;MLEAF=0.375;MQ=5.33;MQ0=206;MQRankSum=1.467;QD=0.44;ReadPosRankSum=0.667	GT:AD:DP:GQ:PL	0/1:39,4:44:21:21,0,21	0/1:60,10:70:39:39,0,65	0/0:48,3:51:3:0,3,26	0/1:45,10:55:18:45,0,18
+1	19858	.	C	T	3188.97	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.384;DP=333;Dels=0.00;FS=0.000;HaplotypeScore=1.0028;MLEAC=4;MLEAF=0.500;MQ=19.98;MQ0=151;MQRankSum=0.762;QD=9.58;ReadPosRankSum=0.238	GT:AD:DP:GQ:PL	0/1:25,49:74:99:621,0,100	0/1:26,53:79:99:750,0,280	0/1:26,65:91:99:960,0,169	0/1:32,57:89:99:890,0,310
+1	19942	.	G	C	1077.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=11.081;DP=402;Dels=0.00;FS=0.000;HaplotypeScore=12.7813;MLEAC=4;MLEAF=0.500;MQ=22.81;MQ0=127;MQRankSum=0.156;QD=2.68;ReadPosRankSum=0.543	GT:AD:DP:GQ:PL	0/1:85,26:111:99:288,0,1205	0/1:79,22:102:99:230,0,808	0/1:72,16:88:99:188,0,1097	0/1:77,24:101:99:404,0,1133
+1	19952	.	G	T	268.13	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.052;DP=382;Dels=0.00;FS=0.000;HaplotypeScore=13.1417;MLEAC=4;MLEAF=0.500;MQ=22.45;MQ0=123;MQRankSum=-0.189;QD=0.70;ReadPosRankSum=-0.317	GT:AD:DP:GQ:PL	0/1:87,18:105:99:159,0,1313	0/1:90,11:101:80:80,0,1106	0/1:72,7:79:3:3,0,1338	0/1:82,13:95:57:57,0,1585
+1	20129	.	C	T	1862.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=5.510;DP=546;Dels=0.00;FS=3.287;HaplotypeScore=10.8088;MLEAC=4;MLEAF=0.500;MQ=22.86;MQ0=48;MQRankSum=0.737;QD=3.41;ReadPosRankSum=-1.548	GT:AD:DP:GQ:PL	0/1:109,33:142:99:333,0,2140	0/1:82,40:122:99:666,0,1409	0/1:93,27:120:99:376,0,1823	0/1:124,37:162:99:520,0,2576
+1	20144	.	G	A	3261.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.441;DP=596;Dels=0.00;FS=1.102;HaplotypeScore=11.1173;MLEAC=4;MLEAF=0.500;MQ=24.01;MQ0=51;MQRankSum=2.172;QD=5.47;ReadPosRankSum=-0.792	GT:AD:DP:GQ:PL	0/1:94,52:147:99:876,0,1732	0/1:106,38:144:99:561,0,2015	0/1:86,42:128:99:759,0,1823	0/1:119,58:177:99:1098,0,2380
+1	20206	.	C	T	123.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=6.887;DP=693;Dels=0.00;FS=1.259;HaplotypeScore=23.0271;MLEAC=2;MLEAF=0.250;MQ=25.48;MQ0=150;MQRankSum=2.373;QD=0.34;ReadPosRankSum=1.063	GT:AD:DP:GQ:PL	0/0:139,15:155:99:0,139,2522	0/1:171,19:190:45:45,0,2806	0/1:154,19:173:99:113,0,2789	0/0:162,13:175:96:0,96,2839
+1	20245	.	G	A	930.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.717;DP=627;Dels=0.00;FS=13.851;HaplotypeScore=15.5971;MLEAC=4;MLEAF=0.500;MQ=23.78;MQ0=218;MQRankSum=1.625;QD=1.48;ReadPosRankSum=1.326	GT:AD:DP:GQ:PL	0/1:119,28:147:99:181,0,1629	0/1:127,33:160:99:232,0,2139	0/1:131,28:159:99:434,0,2164	0/1:138,21:161:99:116,0,2107
+1	20304	.	G	C	1182.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.386;DP=429;Dels=0.00;FS=16.345;HaplotypeScore=3.1384;MLEAC=4;MLEAF=0.500;MQ=14.90;MQ0=294;MQRankSum=0.725;QD=2.76;ReadPosRankSum=-1.136	GT:AD:DP:GQ:PL	0/1:68,39:107:99:333,0,314	0/1:59,51:110:99:354,0,336	0/1:56,32:89:99:300,0,443	0/1:73,49:122:99:228,0,418
+1	20321	.	A	C	1745.48	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=1.318;DP=432;Dels=0.00;FS=9.367;HaplotypeScore=1.8208;MLEAC=4;MLEAF=0.500;MQ=10.62;MQ0=331;MQRankSum=-0.856;QD=4.04;ReadPosRankSum=-1.850	GT:AD:DP:GQ:PL	1/1:41,71:112:1:575,1,0	0/1:49,62:111:99:393,0,120	0/1:33,51:84:68:410,0,68	0/1:51,73:124:23:398,0,23
+1	20467	.	C	T	2196.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.972;DP=507;Dels=0.00;FS=0.000;HaplotypeScore=2.2732;MLEAC=4;MLEAF=0.500;MQ=15.67;MQ0=306;MQRankSum=1.851;QD=4.33;ReadPosRankSum=-0.325	GT:AD:DP:GQ:PL	0/1:63,50:114:99:519,0,389	0/1:72,62:134:99:622,0,308	0/1:53,64:117:99:531,0,291	0/1:82,60:142:99:557,0,585
+1	20512	.	G	T	1564.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.373;DP=548;Dels=0.00;FS=0.000;HaplotypeScore=0.4002;MLEAC=4;MLEAF=0.500;MQ=14.26;MQ0=401;MQRankSum=1.320;QD=2.86;ReadPosRankSum=2.050	GT:AD:DP:GQ:PL	0/1:61,50:111:99:204,0,103	0/1:90,66:157:99:520,0,465	0/1:67,62:129:99:458,0,346	0/1:83,68:151:99:415,0,431
+1	20595	.	A	G	278.46	HARD_TO_VALIDATE;LowQD	AC=5;AF=0.625;AN=8;BaseQRankSum=0.000;DP=541;Dels=0.00;FS=0.000;HaplotypeScore=1.3358;MLEAC=5;MLEAF=0.625;MQ=10.60;MQ0=493;MQRankSum=1.508;QD=0.51;ReadPosRankSum=-0.441	GT:AD:DP:GQ:PL	1/1:94,22:116:3:35,3,0	0/1:111,29:140:43:43,0,482	0/1:92,30:122:99:118,0,308	0/1:119,44:163:62:114,0,62
+1	28511	.	G	A	64.64	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.038;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.6569;MLEAC=3;MLEAF=0.375;MQ=5.49;MQ0=146;MQRankSum=0.635;QD=0.78;ReadPosRankSum=0.635	GT:AD:DP:GQ:PL	0/1:37,6:43:16:44,0,16	1/1:36,4:40:6:54,6,0	0/0:38,2:40:6:0,6,49	0/0:45,1:46:3:0,3,25
+1	28558	.	C	T	63.93	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.446;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8418;MLEAC=3;MLEAF=0.375;MQ=8.05;MQ0=86;MQRankSum=0.348;QD=1.07;ReadPosRankSum=1.592	GT:AD:DP:GQ:PL	0/1:19,8:27:19:44,0,19	1/1:24,9:33:6:54,6,0	0/0:28,4:32:9:0,9,76	0/0:27,6:33:3:0,3,25
+1	28563	.	A	G	184.82	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.403;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9864;MLEAC=8;MLEAF=1.00;MQ=8.32;MQ0=80;MQRankSum=-1.733;QD=1.51;ReadPosRankSum=-0.825	GT:AD:DP:GQ:PL	1/1:7,20:27:9:81,9,0	1/1:7,24:31:3:27,3,0	1/1:4,28:32:9:76,9,0	1/1:6,25:32:3:25,3,0
+1	28835	.	A	G	35.58	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=1.00;AN=4;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=5.96;MQ0=60;QD=0.96	GT:AD:DP:GQ:PL	./.	./.	1/1:8,14:22:3:27,3,0	1/1:7,8:15:3:32,3,0
+1	29368	.	G	A	35.79	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=2.900;DP=106;Dels=0.00;FS=14.782;HaplotypeScore=0.4967;MLEAC=3;MLEAF=0.375;MQ=14.44;MQ0=66;MQRankSum=-1.538;QD=0.44;ReadPosRankSum=-2.355	GT:AD:DP:GQ:PL	0/1:24,3:27:10:10,0,124	0/0:18,5:23:5:0,5,190	0/1:25,10:35:50:50,0,147	0/1:16,4:20:7:7,0,142
+1	30548	.	T	G	413.72	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=-4.559;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=1.3235;MLEAC=8;MLEAF=1.00;MQ=10.91;MQ0=190;MQRankSum=2.879;QD=1.72;ReadPosRankSum=0.605	GT:AD:DP:GQ:PL	1/1:37,15:54:6:56,6,0	1/1:29,31:61:18:154,18,0	0/1:38,28:66:3:150,0,3	1/1:30,29:59:9:80,9,0
+1	30923	.	G	T	303.38	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=108;Dels=0.05;FS=0.000;HaplotypeScore=2.2909;MLEAC=8;MLEAF=1.00;MQ=12.79;MQ0=13;QD=2.81	GT:AD:DP:GQ:PL	1/1:0,24:24:9:84,9,0	1/1:0,25:26:3:33,3,0	1/1:0,26:26:6:70,6,0	1/1:0,27:27:15:141,15,0
+1	31029	.	G	A	179.31	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.2400;MLEAC=6;MLEAF=1.00;MQ=9.54;MQ0=54;QD=3.59	GT:AD:DP:GQ:PL	./.	1/1:17,3:20:9:90,9,0	1/1:10,4:14:6:65,6,0	1/1:13,3:16:6:49,6,0
+1	39255	.	A	C	530.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.954;DP=200;Dels=0.00;FS=15.994;HaplotypeScore=0.7440;MLEAC=4;MLEAF=0.500;MQ=11.39;MQ0=142;MQRankSum=0.233;QD=2.65;ReadPosRankSum=-1.632	GT:AD:DP:GQ:PL	0/1:30,23:53:99:193,0,101	0/1:30,18:49:82:82,0,167	0/1:22,22:44:33:144,0,33	0/1:26,28:54:57:144,0,57
+1	39261	.	T	C	478.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.993;DP=207;Dels=0.00;FS=13.616;HaplotypeScore=1.1063;MLEAC=4;MLEAF=0.500;MQ=10.82;MQ0=152;MQRankSum=-0.322;QD=2.31;ReadPosRankSum=-1.140	GT:AD:DP:GQ:PL	0/1:29,27:56:99:167,0,104	0/1:28,20:48:99:108,0,134	0/1:19,24:43:36:117,0,36	0/1:28,31:60:63:119,0,63
+1	39292	.	G	T	49.97	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.646;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.5615;MLEAC=2;MLEAF=0.250;MQ=8.86;MQ0=198;MQRankSum=0.502;QD=0.54;ReadPosRankSum=0.780	GT:AD:DP:GQ:PL	0/0:59,11:70:6:0,6,278	0/1:34,8:42:62:62,0,121	0/1:43,7:50:21:21,0,48	0/0:68,8:76:21:0,21,198
+1	39406	.	G	C	61.11	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.384;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=0.7450;MLEAC=2;MLEAF=0.250;MQ=9.59;MQ0=210;MQRankSum=-0.858;QD=0.30;ReadPosRankSum=0.083	GT:AD:DP:GQ:PL	0/0:51,4:55:24:0,24,224	0/1:65,7:72:1:1,0,195	0/1:54,11:65:84:87,0,84	0/1:59,5:64:2:2,0,371
+1	39423	.	T	C	63.33	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-4.034;DP=263;Dels=0.00;FS=0.000;HaplotypeScore=1.0001;MLEAC=2;MLEAF=0.250;MQ=10.82;MQ0=202;MQRankSum=-2.098;QD=0.47;ReadPosRankSum=-0.098	GT:AD:DP:GQ:PL	0/1:38,15:53:78:78,0,160	0/1:67,15:82:19:19,0,238	0/0:59,8:67:11:0,11,303	0/0:49,10:59:57:0,57,533
+1	39874	.	C	T	100.95	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.245;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=0.1972;MLEAC=3;MLEAF=0.375;MQ=8.44;MQ0=200;MQRankSum=-0.472;QD=0.59;ReadPosRankSum=0.510	GT:AD:DP:GQ:PL	0/0:63,1:64:27:0,27,250	0/1:50,6:56:65:65,0,91	0/1:51,6:57:18:40,0,18	0/1:53,5:58:30:30,0,172
+1	47960	.	T	A	381.78	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=8.98;MQ0=94;QD=3.50	GT:AD:DP:GQ:PL	1/1:14,13:27:12:118,12,0	1/1:12,16:28:9:89,9,0	1/1:18,11:29:9:89,9,0	1/1:14,9:23:12:111,12,0
+1	48448	.	C	T	417.50	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=1.369;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=7.35;MQ0=176;MQRankSum=0.274;QD=2.14;ReadPosRankSum=1.187	GT:AD:DP:GQ:PL	1/1:38,8:46:3:30,3,0	1/1:48,10:58:18:174,18,0	0/1:43,15:58:12:130,0,12	1/1:23,10:33:12:113,12,0
+1	49291	.	C	T	64.79	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=11.83;MQ0=10;QD=5.89	GT:AD:DP:GQ:PL	1/1:2,2:4:3:32,3,0	1/1:0,2:2:3:24,3,0	1/1:3,2:5:3:32,3,0	./.
+1	49404	.	C	A	305.03	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=9.72;MQ0=73;QD=3.32	GT:AD:DP:GQ:PL	1/1:9,7:18:9:91,9,0	1/1:10,14:27:9:91,9,0	1/1:13,7:21:3:32,3,0	1/1:10,14:25:15:152,15,0
+1	49427	.	C	T	140.37	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=0.724;DP=99;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=11.67;MQ0=70;MQRankSum=-1.864;QD=1.73;ReadPosRankSum=-0.724	GT:AD:DP:GQ:PL	0/0:15,3:18:6:0,6,61	0/1:21,9:30:73:73,0,73	0/1:18,6:24:41:41,0,51	0/1:20,6:27:59:59,0,128
+1	49448	.	A	G	185.46	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=-0.898;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=5;MLEAF=0.625;MQ=11.04;MQ0=65;MQRankSum=0.558;QD=2.02;ReadPosRankSum=-3.276	GT:AD:DP:GQ:PL	1/1:13,8:21:3:30,3,0	0/1:17,11:28:41:41,0,99	0/1:14,6:20:41:49,0,41	0/1:13,10:23:62:97,0,62
+1	51898	.	C	A	165.18	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=19.14;MQ0=5;QD=12.71	GT:AD:DP:GQ:PL	1/1:0,4:4:6:64,6,0	1/1:0,5:5:3:32,3,0	1/1:0,2:2:3:30,3,0	1/1:0,2:2:6:63,6,0
+1	51928	.	G	A	343.93	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=22.64;MQ0=5;QD=16.38	GT:AD:DP:GQ:PL	1/1:0,5:5:9:97,9,0	1/1:0,8:8:9:85,9,0	1/1:0,4:4:9:94,9,0	1/1:0,4:4:9:93,9,0
+1	52238	.	T	G	573.66	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.614;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8083;MLEAC=8;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=-1.494;QD=19.12;ReadPosRankSum=-1.255	GT:AD:DP:GQ:PL	1/1:1,4:6:9:100,9,0	1/1:0,10:10:18:187,18,0	1/1:0,9:9:21:224,21,0	1/1:0,5:5:9:88,9,0
+1	54001	.	A	G	200.68	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=13.94;MQ0=15;QD=8.73	GT:AD:DP:GQ:PL	1/1:2,3:5:6:59,6,0	1/1:1,8:9:3:24,3,0	1/1:0,3:3:6:53,6,0	1/1:3,3:6:9:89,9,0
+1	54366	.	A	G	40.58	HARD_TO_VALIDATE;LowQual	AC=4;AF=1.00;AN=4;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.38;MQ0=6;QD=10.14	GT:AD:DP:GQ:PL	./.	./.	1/1:0,1:1:3:34,3,0	1/1:1,2:3:3:30,3,0
+1	54586	.	T	C	435.19	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=29.73;MQ0=4;QD=19.78	GT:AD:DP:GQ:PL	1/1:0,3:4:3:35,3,0	1/1:0,7:7:9:105,9,0	1/1:0,4:4:9:80,9,0	1/1:0,7:7:21:240,21,0
+1	54676	.	C	T	475.06	PASS	AC=8;AF=1.00;AN=8;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=42.50;MQ0=2;QD=22.62	GT:AD:DP:GQ:PL	1/1:0,6:6:9:102,9,0	1/1:0,2:2:6:65,6,0	1/1:0,4:4:6:73,6,0	1/1:0,9:9:24:260,24,0
+1	54708	.	G	C	475.99	PASS	AC=8;AF=1.00;AN=8;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.0597;MLEAC=8;MLEAF=1.00;MQ=43.98;MQ0=2;QD=20.70	GT:AD:DP:GQ:PL	1/1:0,5:5:6:69,6,0	1/1:0,4:4:6:68,6,0	1/1:0,5:5:12:135,12,0	1/1:0,8:9:21:229,21,0
+1	54716	.	C	T	194.19	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.137;DP=28;Dels=0.04;FS=13.415;HaplotypeScore=2.8889;MLEAC=4;MLEAF=0.500;MQ=46.77;MQ0=2;MQRankSum=-1.889;QD=10.22;ReadPosRankSum=1.068	GT:AD:DP:GQ:PL	0/1:1,5:6:15:61,0,15	1/1:0,3:3:6:68,6,0	0/1:5,5:10:99:101,0,148	0/0:8,0:8:21:0,21,239
+1	54720	.	C	T	36.08	LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.856;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9671;MLEAC=3;MLEAF=0.375;MQ=48.54;MQ0=2;MQRankSum=-0.442;QD=1.64;ReadPosRankSum=-2.386	GT:AD:DP:GQ:PL	0/1:6,1:7:22:22,0,81	0/1:3,1:4:15:15,0,60	0/0:11,0:11:30:0,30,349	0/1:9,2:11:33:33,0,244
+1	54844	.	G	A	581.72	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=17.74;MQ0=48;QD=8.08	GT:AD:DP:GQ:PL	1/1:8,9:17:12:125,12,0	1/1:9,6:15:6:59,6,0	1/1:10,10:20:24:243,24,0	1/1:10,10:20:18:180,18,0
+1	55085	.	T	A	637.49	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=20.01;MQ0=33;QD=10.99	GT:AD:DP:GQ:PL	1/1:11,5:16:12:125,12,0	1/1:4,8:12:18:194,18,0	1/1:6,6:12:15:162,15,0	1/1:7,11:18:18:182,18,0
+1	55164	.	C	A	34.33	HARD_TO_VALIDATE;LowQual	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.32;MQ0=12;QD=6.87	GT:AD:DP:GQ:PL	./.	./.	1/1:0,5:5:6:59,6,0	./.
+1	56799	.	T	C	36.58	LowQual	AC=4;AF=1.00;AN=4;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.27;MQ0=1;QD=9.15	GT:AD:DP:GQ:PL	1/1:0,2:2:3:30,3,0	./.	./.	1/1:0,2:2:3:30,3,0
+1	57246	.	C	G	133.08	PASS	AC=6;AF=1.00;AN=6;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.2774;MLEAC=6;MLEAF=1.00;MQ=25.13;MQ0=1;MQRankSum=0.736;QD=19.01;ReadPosRankSum=-0.736	GT:AD:DP:GQ:PL	1/1:0,1:1:3:33,3,0	1/1:1,2:3:3:30,3,0	./.	1/1:0,3:3:9:94,9,0
+1	57376	.	C	T	123.18	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=14.94;MQ0=9;QD=13.69	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:59,6,0	1/1:0,7:7:9:89,9,0	./.
+1	57483	.	G	A	241.59	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=8.28;MQ0=72;QD=2.95	GT:AD:DP:GQ:PL	1/1:16,5:21:6:59,6,0	1/1:11,8:20:12:118,12,0	1/1:16,1:17:3:30,3,0	1/1:19,5:24:6:59,6,0
+1	57856	.	T	A	835.44	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=17.70;MQ0=41;QD=11.29	GT:AD:DP:GQ:PL	1/1:7,10:17:21:217,21,0	1/1:10,4:14:12:118,12,0	1/1:14,12:26:27:266,27,0	1/1:6,11:17:24:260,24,0
+1	58211	.	A	G	188.56	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;BaseQRankSum=0.747;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=21.88;MQ0=4;MQRankSum=0.747;QD=18.86;ReadPosRankSum=-0.747	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0	1/1:0,2:2:3:30,3,0	./.	1/1:1,5:6:12:124,12,0
+1	58771	.	T	C	669.53	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.2489;MLEAC=8;MLEAF=1.00;MQ=16.12;MQ0=56;QD=8.07	GT:AD:DP:GQ:PL	1/1:16,9:25:12:133,12,0	1/1:8,8:16:15:152,15,0	1/1:12,6:18:12:127,12,0	1/1:12,12:24:27:283,27,0
+1	58866	.	C	G	913.62	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=12.19;MQ0=107;QD=6.39	GT:AD:DP:GQ:PL	1/1:16,13:29:24:267,24,0	1/1:26,15:41:30:294,30,0	1/1:21,6:27:6:53,6,0	1/1:32,14:46:33:325,33,0
+1	58989	.	C	G	61	HARD_TO_VALIDATE;LowQD	AC=4;AF=1.00;AN=4;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=4.25;MQ0=101;QD=1.07	GT:AD:DP:GQ:PL	1/1:22,5:27:6:55,6,0	./.	./.	1/1:24,6:30:3:30,3,0
+1	60332	.	T	C	772.46	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=8;MLEAF=1.00;MQ=15.01;MQ0=46;QD=9.78	GT:AD:DP:GQ:PL	1/1:11,11:22:15:148,15,0	1/1:8,12:20:24:231,24,0	1/1:9,6:15:12:123,12,0	1/1:9,13:22:30:296,30,0
+1	61219	.	T	C	74	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=7.72;MQ0=63;QD=1.85	GT:AD:DP:GQ:PL	1/1:12,2:15:6:68,6,0	./.	./.	1/1:21,4:25:3:30,3,0
+1	61442	.	A	G	38.58	HARD_TO_VALIDATE;LowQual	AC=4;AF=1.00;AN=4;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.4995;MLEAC=4;MLEAF=1.00;MQ=16.42;MQ0=7;QD=5.51	GT:AD:DP:GQ:PL	./.	./.	1/1:0,3:3:3:30,3,0	1/1:0,4:4:3:32,3,0
+1	61499	.	G	A	105.33	PASS	AC=6;AF=1.00;AN=6;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=25.22;MQ0=2;QD=26.33	GT:AD:DP:GQ:PL	1/1:0,1:1:3:30,3,0	1/1:0,2:2:6:64,6,0	1/1:0,1:1:3:35,3,0	./.
+1	61851	.	T	A	318.81	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.470;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.50;MQ0=2;MQRankSum=0.401;QD=21.25;ReadPosRankSum=0.668	GT:AD:DP:GQ:PL	1/1:1,3:4:6:72,6,0	1/1:0,1:1:3:30,3,0	1/1:0,2:2:3:24,3,0	1/1:0,8:8:21:217,21,0
+1	61987	.	A	G	953.43	PASS	AC=8;AF=1.00;AN=8;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.2495;MLEAC=8;MLEAF=1.00;MQ=50.78;MQ0=2;QD=27.24	GT:AD:DP:GQ:PL	1/1:1,10:12:24:267,24,0	1/1:0,9:9:24:270,24,0	1/1:0,4:4:12:145,12,0	1/1:1,9:10:27:297,27,0
+1	61989	.	G	C	1034.43	PASS	AC=8;AF=1.00;AN=8;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=8;MLEAF=1.00;MQ=50.33;MQ0=2;QD=28.73	GT:AD:DP:GQ:PL	1/1:1,11:12:24:279,24,0	1/1:0,10:10:27:320,27,0	1/1:0,4:4:12:144,12,0	1/1:1,9:10:27:317,27,0
+1	62203	.	T	C	1014.53	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=34.05;MQ0=4;QD=26.01	GT:AD:DP:GQ:PL	1/1:0,11:11:27:296,27,0	1/1:0,6:6:9:92,9,0	1/1:0,6:6:15:175,15,0	1/1:0,16:16:45:477,45,0
+1	62271	.	A	G	240.11	PASS	AC=6;AF=1.00;AN=6;BaseQRankSum=0.348;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=6;MLEAF=1.00;MQ=26.44;MQ0=3;MQRankSum=1.044;QD=18.47;ReadPosRankSum=-1.393	GT:AD:DP:GQ:PL	./.	1/1:1,5:6:9:96,9,0	1/1:1,2:3:6:66,6,0	1/1:0,4:4:9:103,9,0
+1	62777	.	A	T	363.51	HARD_TO_VALIDATE	AC=5;AF=0.833;AN=6;BaseQRankSum=0.306;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=13.42;MQ0=40;MQRankSum=-1.531;QD=7.13;ReadPosRankSum=-1.531	GT:AD:DP:GQ:PL	1/1:11,7:19:12:125,12,0	0/1:10,10:20:6:183,0,6	1/1:6,6:12:9:83,9,0	./.
+1	63516	.	A	G	87.68	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=11.65;MQ0=14;QD=7.31	GT:AD:DP:GQ:PL	./.	1/1:2,3:5:3:32,3,0	./.	1/1:2,5:7:9:80,9,0
+1	63527	.	T	C	90.68	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=12.76;MQ0=11;QD=9.07	GT:AD:DP:GQ:PL	./.	1/1:2,3:5:3:30,3,0	./.	1/1:1,4:5:9:85,9,0
+1	64548	.	A	C	212.95	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=-0.107;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=9.02;MQ0=94;MQRankSum=-0.107;QD=2.01;ReadPosRankSum=0.322	GT:AD:DP:GQ:PL	1/1:30,2:32:6:61,6,0	0/1:23,3:26:26:27,0,26	1/1:16,8:24:9:89,9,0	1/1:21,3:24:6:66,6,0
+1	64552	.	G	A	207.93	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=-2.256;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=8.85;MQ0=98;MQRankSum=-0.107;QD=1.89;ReadPosRankSum=0.752	GT:AD:DP:GQ:PL	1/1:29,2:31:6:61,6,0	0/1:26,4:30:26:26,0,31	1/1:16,8:24:9:89,9,0	1/1:21,4:25:6:62,6,0
+1	65797	.	T	C	161.33	HARD_TO_VALIDATE;LowQD	AC=8;AF=1.00;AN=8;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=5.52;MQ0=130;QD=1.18	GT:AD:DP:GQ:PL	1/1:31,6:37:3:32,3,0	1/1:24,6:30:3:26,3,0	1/1:27,3:30:3:32,3,0	1/1:33,7:40:9:95,9,0
+1	65872	.	T	G	504.84	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=9.65;MQ0=116;QD=3.77	GT:AD:DP:GQ:PL	1/1:24,12:36:12:126,12,0	1/1:23,6:29:6:63,6,0	1/1:26,4:30:9:95,9,0	1/1:24,14:38:24:246,24,0
+1	66162	.	A	T	262.51	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=-0.791;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=1.423;QD=23.86;ReadPosRankSum=-0.474	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0	1/1:0,1:1:3:32,3,0	1/1:1,2:3:6:63,6,0	1/1:0,4:4:9:97,9,0
+1	66378	.	A	T	31.40	LowQual	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9320;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=3;MQRankSum=0.736;QD=10.47;ReadPosRankSum=0.736	GT:AD:DP:GQ:PL	0/1:1,2:3:20:57,0,20	./.	./.	./.
+1	66577	.	A	C	40.58	LowQual	AC=4;AF=1.00;AN=4;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=15.64;MQ0=3;QD=8.12	GT:AD:DP:GQ:PL	./.	1/1:1,1:2:3:32,3,0	./.	1/1:1,2:3:3:32,3,0
+1	71875	.	G	A	92.33	HARD_TO_VALIDATE;LowQD	AC=6;AF=1.00;AN=6;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.5075;MLEAC=6;MLEAF=1.00;MQ=5.31;MQ0=83;QD=1.36	GT:AD:DP:GQ:PL	1/1:14,6:20:3:30,3,0	./.	1/1:14,5:19:6:58,6,0	1/1:22,7:29:3:28,3,0
+1	72862	.	G	A	246.41	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6913;MLEAC=6;MLEAF=0.750;MQ=8.36;MQ0=82;QD=2.59	GT:AD:DP:GQ:PL	1/1:19,8:28:12:103,12,0	1/1:15,4:19:3:29,3,0	1/1:7,7:14:3:29,3,0	1/1:25,8:34:15:143,15,0
+1	72893	.	T	C	367.93	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=8.84;MQ0=86;QD=3.68	GT:AD:DP:GQ:PL	1/1:17,5:22:9:79,9,0	1/1:22,5:27:9:86,9,0	1/1:13,5:18:6:57,6,0	1/1:27,6:33:18:171,18,0
+1	74570	.	T	A	73.84	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.053;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=1.5334;MLEAC=4;MLEAF=0.500;MQ=4.80;MQ0=192;MQRankSum=2.920;QD=0.75;ReadPosRankSum=-2.920	GT:AD:DP:GQ:PL	0/0:55,0:55:3:0,3,22	1/1:43,2:46:6:58,6,0	0/1:50,2:52:13:48,0,13	0/0:55,1:56:3:0,3,22
+1	74681	.	G	T	642.46	HARD_TO_VALIDATE	AC=6;AF=0.750;AN=8;BaseQRankSum=-0.347;DP=79;Dels=0.01;FS=27.597;HaplotypeScore=0.7153;MLEAC=6;MLEAF=0.750;MQ=19.39;MQ0=43;MQRankSum=3.670;QD=8.13;ReadPosRankSum=-0.639	GT:AD:DP:GQ:PL	0/1:20,5:25:7:119,0,7	1/1:8,5:13:15:166,15,0	1/1:10,11:21:8:267,8,0	0/1:13,6:19:7:121,0,7
+1	74764	.	A	T	60.85	HARD_TO_VALIDATE	AC=2;AF=0.500;AN=4;BaseQRankSum=0.550;DP=57;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=0.500;MQ=9.75;MQ0=47;MQRankSum=0.937;QD=2.10;ReadPosRankSum=0.550	GT:AD:DP:GQ:PL	0/1:14,3:17:13:63,0,13	./.	0/1:10,2:12:16:25,0,16	./.
+1	74771	.	A	G	61.78	HARD_TO_VALIDATE	AC=3;AF=0.750;AN=4;BaseQRankSum=-1.380;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.750;MQ=10.02;MQ0=42;MQRankSum=0.720;QD=2.57;ReadPosRankSum=0.000	GT:AD:DP:GQ:PL	1/1:10,3:13:6:63,6,0	./.	0/1:9,2:11:16:26,0,16	./.
+1	75139	.	C	G	211.68	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.423;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=6.46;MQ0=130;MQRankSum=0.791;QD=1.50;ReadPosRankSum=-1.107	GT:AD:DP:GQ:PL	1/1:43,2:45:6:60,6,0	1/1:30,4:35:9:83,9,0	1/1:29,2:31:3:29,3,0	1/1:26,4:30:6:64,6,0
+1	75194	.	G	C	96.92	HARD_TO_VALIDATE;LowQD	AC=8;AF=1.00;AN=8;BaseQRankSum=1.067;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=5.82;MQ0=109;MQRankSum=1.067;QD=0.83;ReadPosRankSum=0.572	GT:AD:DP:GQ:PL	1/1:28,2:30:3:29,3,0	1/1:27,2:29:3:30,3,0	1/1:32,1:33:3:32,3,0	1/1:23,2:25:3:29,3,0
+1	94260	.	G	A	225.82	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=8.30;MQ0=52;QD=3.58	GT:AD:DP:GQ:PL	1/1:8,12:20:18:148,18,0	1/1:8,6:14:6:48,6,0	1/1:7,7:14:3:27,3,0	1/1:7,8:15:3:27,3,0
+1	94545	.	C	T	308.08	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.272;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=8.20;MQ0=89;MQRankSum=3.377;QD=2.85;ReadPosRankSum=0.921	GT:AD:DP:GQ:PL	1/1:32,9:41:18:162,18,0	1/1:16,6:22:9:73,9,0	1/1:19,5:24:6:51,6,0	1/1:15,6:21:6:47,6,0
+1	94699	.	G	A	50	HARD_TO_VALIDATE;LowQD	AC=4;AF=1.00;AN=4;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=3.97;MQ0=72;QD=1.02	GT:AD:DP:GQ:PL	1/1:19,3:22:3:25,3,0	1/1:23,4:27:6:49,6,0	./.	./.
+1	94893	.	A	G	34.58	HARD_TO_VALIDATE;LowQual	AC=4;AF=1.00;AN=4;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=12.23;MQ0=7;QD=3.84	GT:AD:DP:GQ:PL	1/1:0,5:5:3:25,3,0	1/1:0,4:4:3:33,3,0	./.	./.
+1	98033	.	G	C	156.96	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.457;DP=169;Dels=0.00;FS=3.861;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=9.18;MQ0=129;MQRankSum=1.402;QD=0.93;ReadPosRankSum=-0.339	GT:AD:DP:GQ:PL	0/1:38,5:43:35:35,0,58	0/1:36,10:46:96:100,0,96	0/1:30,5:35:27:27,0,156	0/1:41,4:45:27:27,0,106
+1	98945	.	C	T	68	PASS	AC=4;AF=1.00;AN=4;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=26.06;MQ0=0;QD=22.67	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0	./.	./.	1/1:0,1:1:3:33,3,0
+1	98993	.	G	A	116.23	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.639;DP=18;Dels=0.00;FS=2.112;HaplotypeScore=3.4327;MLEAC=4;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-0.421;QD=7.26;ReadPosRankSum=1.171	GT:AD:DP:GQ:PL	0/0:2,0:2:3:0,3,32	1/1:2,2:4:6:67,6,0	0/1:4,2:6:24:24,0,77	0/1:4,2:6:58:58,0,88
+1	101268	.	G	A	184.29	HARD_TO_VALIDATE	AC=6;AF=0.750;AN=8;BaseQRankSum=1.090;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=10.18;MQ0=69;MQRankSum=1.246;QD=3.18;ReadPosRankSum=-1.401	GT:AD:DP:GQ:PL	1/1:13,5:18:6:69,6,0	0/0:21,4:25:3:0,3,33	1/1:13,2:15:6:50,6,0	1/1:13,12:25:9:97,9,0
+1	101389	.	A	C	172.13	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=0.204;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.6778;MLEAC=3;MLEAF=0.375;MQ=19.65;MQ0=65;MQRankSum=-0.436;QD=2.00;ReadPosRankSum=-1.426	GT:AD:DP:GQ:PL	0/1:25,3:28:14:14,0,136	0/1:17,5:22:99:105,0,165	0/1:31,5:36:87:87,0,344	0/0:23,0:23:21:0,21,233
+1	102138	.	C	T	169.20	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=13.91;MQ0=7;QD=11.28	GT:AD:DP:GQ:PL	1/1:2,6:8:12:98,12,0	./.	1/1:0,3:3:6:49,6,0	1/1:0,4:4:6:47,6,0
+1	102664	.	A	G	759.54	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=17.85;MQ0=58;QD=9.15	GT:AD:DP:GQ:PL	1/1:11,8:19:9:107,9,0	1/1:12,10:22:24:278,24,0	1/1:8,11:19:15:174,15,0	1/1:12,11:23:21:226,21,0
+1	103241	.	C	T	935.40	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.6934;MLEAC=8;MLEAF=1.00;MQ=21.45;MQ0=32;QD=13.17	GT:AD:DP:GQ:PL	1/1:3,7:10:15:153,15,0	1/1:6,11:17:21:225,21,0	1/1:4,19:23:27:279,27,0	1/1:2,19:21:30:304,30,0
+1	103250	.	G	A	382.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.184;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.4776;MLEAC=4;MLEAF=0.500;MQ=22.23;MQ0=27;MQRankSum=0.687;QD=5.89;ReadPosRankSum=0.453	GT:AD:DP:GQ:PL	0/1:6,4:10:38:107,0,38	0/1:11,5:16:77:83,0,77	0/1:7,13:20:64:165,0,64	0/1:12,7:19:60:60,0,175
+1	104033	.	T	C	977.37	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.3807;MLEAC=8;MLEAF=1.00;MQ=16.59;MQ0=31;QD=12.37	GT:AD:DP:GQ:PL	1/1:4,11:16:24:216,24,0	1/1:6,17:23:33:302,33,0	1/1:0,18:18:24:244,24,0	1/1:2,20:22:24:241,24,0
+1	105550	.	G	A	30.08	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=0.667;AN=6;BaseQRankSum=0.736;DP=106;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=3.78;MQ0=103;MQRankSum=0.736;QD=0.58;ReadPosRankSum=0.736	GT:AD:DP:GQ:PL	1/1:18,2:20:3:29,3,0	./.	1/1:27,5:32:3:29,3,0	0/0:24,3:27:3:0,3,24
+1	108365	.	A	G	255.54	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.8564;MLEAC=8;MLEAF=1.00;MQ=16.51;MQ0=9;QD=10.65	GT:AD:DP:GQ:PL	1/1:0,3:4:3:28,3,0	1/1:1,5:6:6:57,6,0	1/1:1,4:5:6:52,6,0	1/1:1,8:9:15:143,15,0
+1	108893	.	C	T	921.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.480;DP=170;Dels=0.00;FS=0.840;HaplotypeScore=0.8719;MLEAC=4;MLEAF=0.500;MQ=20.61;MQ0=67;MQRankSum=-2.043;QD=5.42;ReadPosRankSum=-0.977	GT:AD:DP:GQ:PL	0/1:24,13:37:99:176,0,312	0/1:29,18:47:99:320,0,249	0/1:22,14:36:99:166,0,268	0/1:33,17:50:99:292,0,357
+1	109640	.	T	A	451.71	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=33.63;MQ0=7;QD=14.12	GT:AD:DP:GQ:PL	1/1:0,10:10:12:127,12,0	1/1:0,5:5:12:128,12,0	1/1:0,9:9:9:86,9,0	1/1:0,8:8:12:136,12,0
+1	111735	.	C	A	46.60	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.676;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=5.42;MQ0=88;MQRankSum=1.098;QD=0.70;ReadPosRankSum=0.103	GT:AD:DP:GQ:PL	0/1:20,4:24:33:36,0,33	0/0:30,1:31:3:0,3,24	0/1:19,2:21:17:18,0,17	1/1:20,2:22:3:24,3,0
+1	112021	.	G	A	235.02	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.356;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=8.82;MQ0=93;MQRankSum=-0.246;QD=1.99;ReadPosRankSum=-0.246	GT:AD:DP:GQ:PL	0/1:25,4:29:71:71,0,94	0/1:31,3:35:16:39,0,16	0/1:25,6:31:30:79,0,30	0/1:18,5:23:30:78,0,30
+1	112326	.	A	C	151.03	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.094;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=4;MLEAF=0.500;MQ=7.36;MQ0=128;MQRankSum=-2.257;QD=0.99;ReadPosRankSum=0.354	GT:AD:DP:GQ:PL	0/1:27,3:30:17:17,0,19	0/1:34,10:44:68:68,0,70	0/1:32,9:41:50:50,0,55	0/1:28,9:37:48:48,0,77
+1	113682	.	A	G	152.93	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.818;DP=160;Dels=0.00;FS=11.685;HaplotypeScore=0.4413;MLEAC=3;MLEAF=0.375;MQ=8.77;MQ0=119;MQRankSum=2.302;QD=1.19;ReadPosRankSum=0.151	GT:AD:DP:GQ:PL	0/1:46,11:57:67:90,0,67	0/1:32,8:40:26:26,0,95	0/0:29,2:31:27:0,27,204	0/1:22,9:31:69:71,0,69
+1	113969	.	C	T	156.31	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=10.87;MQ0=28;QD=4.74	GT:AD:DP:GQ:PL	./.	1/1:5,8:13:6:49,6,0	1/1:3,4:7:9:73,9,0	1/1:4,9:13:6:59,6,0
+1	114810	.	C	T	277.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=9.36;MQ0=44;QD=4.33	GT:AD:DP:GQ:PL	1/1:9,11:20:18:152,18,0	1/1:9,5:14:6:51,6,0	1/1:5,7:12:3:25,3,0	1/1:7,11:18:9:74,9,0
+1	115902	.	T	A	300.02	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.638;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=0.2498;MLEAC=4;MLEAF=0.500;MQ=11.67;MQ0=150;MQRankSum=0.305;QD=1.71;ReadPosRankSum=1.193	GT:AD:DP:GQ:PL	0/1:29,3:32:30:30,0,31	0/1:34,8:42:19:126,0,19	0/1:44,7:51:19:29,0,19	0/1:40,10:50:48:147,0,48
+1	118318	.	A	G	179.47	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.625;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=9.59;MQ0=96;MQRankSum=-0.567;QD=2.11;ReadPosRankSum=0.567	GT:AD:DP:GQ:PL	0/0:29,2:31:6:0,6,57	0/1:18,7:25:54:85,0,54	0/1:23,14:37:28:111,0,28	0/1:21,2:23:16:16,0,38
+1	118617	.	T	C	1736.36	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.565;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8575;MLEAC=8;MLEAF=1.00;MQ=20.13;MQ0=3;MQRankSum=0.397;QD=20.19;ReadPosRankSum=0.856	GT:AD:DP:GQ:PL	1/1:1,21:22:28:360,28,0	1/1:0,24:24:66:567,66,0	1/1:0,17:17:45:384,45,0	1/1:0,23:23:57:451,57,0
+1	121009	.	C	T	127.91	PASS	AC=6;AF=1.00;AN=6;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=47.48;MQ0=1;QD=21.32	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:6:64,6,0	1/1:0,1:1:3:29,3,0	1/1:0,3:3:6:59,6,0
+1	122872	.	T	G	1040.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.428;DP=126;Dels=0.00;FS=1.530;HaplotypeScore=0.3943;MLEAC=4;MLEAF=0.500;MQ=24.15;MQ0=9;MQRankSum=0.842;QD=8.26;ReadPosRankSum=-0.630	GT:AD:DP:GQ:PL	0/1:19,16:35:99:297,0,341	0/1:16,17:33:99:335,0,274	0/1:19,14:33:99:238,0,306	0/1:12,13:25:99:203,0,175
+1	123143	.	C	G	180.97	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.741;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=9.66;MQ0=125;MQRankSum=2.096;QD=1.24;ReadPosRankSum=-0.533	GT:AD:DP:GQ:PL	0/1:25,5:30:34:83,0,34	0/1:37,4:41:42:42,0,47	0/1:42,5:47:66:66,0,83	0/1:23,5:28:22:22,0,24
+1	123511	.	G	A	1085.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=11.36;MQ0=94;QD=7.75	GT:AD:DP:GQ:PL	1/1:14,13:27:30:247,30,0	1/1:23,15:38:39:321,39,0	1/1:21,12:33:27:222,27,0	1/1:25,17:42:39:321,39,0
+1	123642	.	T	G	246.81	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=5.01;MQ0=142;QD=1.60	GT:AD:DP:GQ:PL	1/1:35,7:42:3:23,3,0	1/1:31,15:46:24:178,24,0	1/1:25,6:31:6:48,6,0	1/1:26,9:35:3:22,3,0
+1	125976	.	C	T	30.33	HARD_TO_VALIDATE;LowQual	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.48;MQ0=4;QD=10.11	GT:AD:DP:GQ:PL	./.	1/1:0,3:3:6:55,6,0	./.	./.
+1	126113	.	C	A	917.38	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=24.30;MQ0=9;QD=19.52	GT:AD:DP:GQ:PL	1/1:0,12:12:30:254,30,0	1/1:0,7:7:21:184,21,0	1/1:0,11:11:18:174,18,0	1/1:0,17:17:33:331,33,0
+1	127219	.	A	C	86.96	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.872;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.2458;MLEAC=3;MLEAF=0.375;MQ=7.01;MQ0=123;MQRankSum=0.951;QD=0.78;ReadPosRankSum=-0.792	GT:AD:DP:GQ:PL	0/0:27,4:31:9:0,9,72	0/1:28,12:40:30:79,0,30	0/1:24,7:31:29:29,0,76	0/1:32,9:41:12:12,0,60
+1	127392	.	G	T	56.84	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.343;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.4538;MLEAC=3;MLEAF=0.375;MQ=8.07;MQ0=116;MQRankSum=1.618;QD=0.58;ReadPosRankSum=-1.079	GT:AD:DP:GQ:PL	0/1:32,3:35:51:52,0,51	0/0:45,3:48:6:0,6,181	0/1:24,4:28:9:9,0,78	0/1:32,3:35:28:28,0,76
+1	127491	.	T	G	356.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.810;DP=158;Dels=0.00;FS=20.674;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=17.32;MQ0=61;MQRankSum=1.242;QD=2.26;ReadPosRankSum=2.032	GT:AD:DP:GQ:PL	0/1:31,7:38:31:31,0,289	0/1:31,9:40:99:119,0,379	0/1:32,10:42:99:187,0,448	0/1:33,5:38:52:52,0,298
+1	127573	.	G	A	796.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.617;DP=203;Dels=0.00;FS=2.322;HaplotypeScore=0.6528;MLEAC=4;MLEAF=0.500;MQ=17.48;MQ0=57;MQRankSum=-1.475;QD=3.93;ReadPosRankSum=1.131	GT:AD:DP:GQ:PL	0/1:35,13:48:99:148,0,388	0/1:42,20:62:99:244,0,539	0/1:33,21:54:99:313,0,413	0/1:26,13:39:99:124,0,237
+1	127908	.	C	T	34.15	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=3.194;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=3;MLEAF=0.375;MQ=9.46;MQ0=59;MQRankSum=-0.417;QD=0.58;ReadPosRankSum=1.065	GT:AD:DP:GQ:PL	0/0:20,0:20:3:0,3,23	0/1:20,2:22:27:27,0,73	0/1:13,4:17:31:31,0,53	0/1:18,2:20:7:7,0,83
+1	127972	.	G	A	124.20	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=3.665;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=18.65;MQ0=18;MQRankSum=-2.893;QD=3.27;ReadPosRankSum=-1.350	GT:AD:DP:GQ:PL	0/1:7,2:9:16:16,0,114	0/1:5,5:10:17:17,0,44	0/1:2,7:9:13:87,0,13	0/1:4,6:10:36:36,0,62
+1	128274	.	A	C	55.17	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.667;AN=6;BaseQRankSum=0.922;DP=82;Dels=0.00;FS=3.680;HaplotypeScore=0.2217;MLEAC=4;MLEAF=0.667;MQ=8.91;MQ0=74;MQRankSum=-2.017;QD=0.77;ReadPosRankSum=-0.421	GT:AD:DP:GQ:PL	./.	0/1:31,4:35:14:14,0,85	0/1:16,4:20:21:44,0,21	1/1:12,5:17:3:26,3,0
+1	128798	.	C	T	191.75	PASS	AC=7;AF=0.875;AN=8;BaseQRankSum=-1.240;DP=18;Dels=0.00;FS=8.451;HaplotypeScore=0.2235;MLEAC=7;MLEAF=0.875;MQ=21.47;MQ0=3;MQRankSum=-0.744;QD=10.65;ReadPosRankSum=-0.248	GT:AD:DP:GQ:PL	1/1:2,6:8:9:90,9,0	1/1:0,2:2:6:56,6,0	0/1:1,3:4:17:50,0,17	1/1:0,4:4:3:25,3,0
+1	129285	.	G	A	1637.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=3.611;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=15.04;MQ0=58;MQRankSum=3.590;QD=11.95;ReadPosRankSum=0.877	GT:AD:DP:GQ:PL	1/1:15,27:43:54:467,54,0	1/1:17,18:35:48:425,48,0	1/1:7,17:24:39:338,39,0	1/1:15,20:35:51:433,51,0
+1	129315	.	A	G	628.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.566;DP=132;Dels=0.00;FS=7.578;HaplotypeScore=0.2458;MLEAC=4;MLEAF=0.500;MQ=17.93;MQ0=25;MQRankSum=-0.420;QD=4.76;ReadPosRankSum=0.875	GT:AD:DP:GQ:PL	0/1:19,13:32:99:161,0,241	0/1:27,13:40:99:185,0,311	0/1:16,9:25:99:161,0,138	0/1:22,13:35:99:154,0,299
+1	129692	.	T	A	39.92	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.864;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=0.250;MQ=18.05;MQ0=30;MQRankSum=-2.039;QD=0.37;ReadPosRankSum=1.640	GT:AD:DP:GQ:PL	0/0:45,7:52:25:0,25,603	0/0:43,10:53:37:0,37,553	0/1:50,12:62:38:38,0,651	0/1:42,4:46:36:36,0,463
+1	131114	.	C	T	215.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.387;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7391;MLEAC=4;MLEAF=0.500;MQ=9.29;MQ0=91;MQRankSum=-0.408;QD=1.86;ReadPosRankSum=1.659	GT:AD:DP:GQ:PL	0/1:30,5:35:36:38,0,36	0/1:27,7:34:31:81,0,31	0/1:17,7:24:72:95,0,72	0/1:18,5:23:34:34,0,58
+1	131552	.	G	T	106.05	HARD_TO_VALIDATE;LowQD	AC=5;AF=0.833;AN=6;BaseQRankSum=-0.742;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=3.91;MQ0=156;MQRankSum=-0.742;QD=0.77;ReadPosRankSum=-0.742	GT:AD:DP:GQ:PL	0/1:47,5:52:17:17,0,18	1/1:41,6:47:6:47,6,0	1/1:35,4:39:9:71,9,0	./.
+1	131609	.	C	A	44.53	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=2.793;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.4958;MLEAC=3;MLEAF=0.375;MQ=6.14;MQ0=128;MQRankSum=-0.380;QD=0.38;ReadPosRankSum=0.689	GT:AD:DP:GQ:PL	0/1:39,5:44:16:16,0,43	0/1:35,5:40:39:41,0,39	0/1:30,3:33:19:20,0,19	0/0:21,2:23:6:0,6,53
+1	133010	.	C	T	232.54	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=16.21;MQ0=4;QD=12.24	GT:AD:DP:GQ:PL	1/1:0,10:10:15:128,15,0	1/1:0,2:2:6:53,6,0	1/1:0,3:3:3:26,3,0	1/1:0,4:4:6:50,6,0
+1	133129	.	G	A	674.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.773;DP=123;Dels=0.00;FS=1.942;HaplotypeScore=1.7465;MLEAC=4;MLEAF=0.500;MQ=30.82;MQ0=30;MQRankSum=-1.393;QD=5.49;ReadPosRankSum=-1.095	GT:AD:DP:GQ:PL	0/1:21,15:36:99:277,0,328	0/1:17,9:26:99:144,0,272	0/1:22,8:30:99:137,0,355	0/1:20,11:31:99:149,0,303
+1	133483	.	G	T	820.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.802;DP=159;Dels=0.00;FS=13.198;HaplotypeScore=1.4575;MLEAC=4;MLEAF=0.500;MQ=23.42;MQ0=65;MQRankSum=-0.787;QD=5.16;ReadPosRankSum=-2.331	GT:AD:DP:GQ:PL	0/1:32,18:50:99:301,0,264	0/1:20,14:34:99:193,0,148	0/1:27,7:34:99:115,0,421	0/1:28,13:41:99:244,0,261
+1	135040	.	T	C	974.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.682;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.1223;MLEAC=4;MLEAF=0.500;MQ=23.75;MQ0=28;MQRankSum=-1.138;QD=7.39;ReadPosRankSum=-1.046	GT:AD:DP:GQ:PL	0/1:17,12:31:99:212,0,296	0/1:19,20:39:99:339,0,233	0/1:20,11:31:99:225,0,286	0/1:18,13:31:99:231,0,275
+1	136048	.	C	T	583.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.219;DP=85;Dels=0.00;FS=1.199;HaplotypeScore=0.2467;MLEAC=4;MLEAF=0.500;MQ=17.63;MQ0=18;MQRankSum=-1.326;QD=6.87;ReadPosRankSum=-0.007	GT:AD:DP:GQ:PL	0/1:8,12:20:61:142,0,61	0/1:12,12:24:99:163,0,140	0/1:6,11:17:51:130,0,51	0/1:11,13:24:68:181,0,68
+1	136505	.	A	G	38.55	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.048;DP=49;Dels=0.00;FS=1.805;HaplotypeScore=0.8091;MLEAC=3;MLEAF=0.375;MQ=19.99;MQ0=19;MQRankSum=1.063;QD=1.17;ReadPosRankSum=0.181	GT:AD:DP:GQ:PL	0/0:15,1:16:6:0,6,62	0/1:8,1:11:22:22,0,58	0/1:6,3:9:14:14,0,86	0/1:9,3:13:35:35,0,107
+1	136506	.	C	G	92.47	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.284;DP=51;Dels=0.00;FS=1.651;HaplotypeScore=0.6645;MLEAC=3;MLEAF=0.375;MQ=20.50;MQ0=19;MQRankSum=1.066;QD=2.72;ReadPosRankSum=-0.849	GT:AD:DP:GQ:PL	0/0:16,1:17:6:0,6,56	0/1:10,1:11:16:16,0,26	0/1:6,4:10:52:66,0,52	0/1:10,3:13:43:43,0,74
+1	136603	.	A	G	106.08	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.817;DP=135;Dels=0.00;FS=1.975;HaplotypeScore=11.0868;MLEAC=3;MLEAF=0.375;MQ=27.05;MQ0=31;MQRankSum=0.050;QD=1.00;ReadPosRankSum=1.329	GT:AD:DP:GQ:PL	0/1:22,8:31:18:18,0,73	0/0:23,6:29:18:0,18,184	0/1:25,12:39:75:75,0,201	0/1:22,12:36:47:47,0,255
+1	136652	.	A	G	113.67	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.137;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.8689;MLEAC=4;MLEAF=0.500;MQ=19.90;MQ0=34;MQRankSum=0.257;QD=0.96;ReadPosRankSum=-0.011	GT:AD:DP:GQ:PL	0/1:14,8:23:16:16,0,27	0/1:19,12:31:24:24,0,209	0/1:21,5:30:6:6,0,126	0/1:23,9:34:99:99,0,120
+1	136787	.	G	A	118.36	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=2.543;DP=203;Dels=0.00;FS=21.171;HaplotypeScore=6.1903;MLEAC=2;MLEAF=0.250;MQ=29.91;MQ0=34;MQRankSum=0.937;QD=1.30;ReadPosRankSum=-1.662	GT:AD:DP:GQ:PL	0/1:45,5:50:99:99,0,457	0/0:53,6:59:4:0,4,663	0/0:50,3:53:35:0,35,629	0/1:38,3:41:52:52,0,391
+1	136817	.	T	C	148.99	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-5.656;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=4.4363;MLEAC=3;MLEAF=0.375;MQ=26.11;MQ0=48;MQRankSum=1.959;QD=0.77;ReadPosRankSum=-1.428	GT:AD:DP:GQ:PL	0/1:50,11:63:19:19,0,555	0/1:56,13:71:99:102,0,476	0/1:50,10:60:62:62,0,377	0/0:40,5:46:23:0,23,464
+1	136877	.	G	A	108.98	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.956;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.7005;MLEAC=3;MLEAF=0.375;MQ=25.65;MQ0=30;MQRankSum=1.314;QD=0.78;ReadPosRankSum=-1.814	GT:AD:DP:GQ:PL	0/1:42,8:50:62:62,0,310	0/0:55,5:60:30:0,30,544	0/1:52,6:59:18:18,0,383	0/1:24,6:30:63:63,0,168
+1	136962	.	C	T	435.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.991;DP=232;Dels=0.00;FS=5.834;HaplotypeScore=6.9853;MLEAC=4;MLEAF=0.500;MQ=24.34;MQ0=55;MQRankSum=0.023;QD=1.88;ReadPosRankSum=0.144	GT:AD:DP:GQ:PL	0/1:48,16:66:99:118,0,327	0/1:41,19:62:99:135,0,237	0/1:42,17:60:77:77,0,307	0/1:26,15:43:99:138,0,146
+1	136995	.	C	T	31.02	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=0.686;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=6.2319;MLEAC=2;MLEAF=0.250;MQ=20.46;MQ0=75;MQRankSum=1.086;QD=0.31;ReadPosRankSum=0.935	GT:AD:DP:GQ:PL	0/1:48,2:50:37:37,0,215	0/0:51,3:59:22:0,22,352	0/1:38,6:50:28:28,0,129	0/0:33,2:37:18:0,18,166
+1	137123	.	T	G	99.03	HARD_TO_VALIDATE	AC=5;AF=0.833;AN=6;BaseQRankSum=2.534;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1942;MLEAC=5;MLEAF=0.833;MQ=20.14;MQ0=6;MQRankSum=0.884;QD=5.50;ReadPosRankSum=-0.412	GT:AD:DP:GQ:PL	1/1:4,3:7:6:68,6,0	./.	1/1:0,3:3:3:34,3,0	0/1:4,4:8:25:25,0,54
+1	137287	.	G	A	30.54	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=0.500;AN=8;BaseQRankSum=0.701;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=8.77;MQ0=86;MQRankSum=-0.289;QD=0.41;ReadPosRankSum=1.196	GT:AD:DP:GQ:PL	0/0:31,1:32:9:0,9,86	0/1:17,3:21:17:17,0,87	1/1:24,2:26:3:27,3,0	0/1:21,6:27:20:20,0,72
+1	137336	.	G	A	57.79	HARD_TO_VALIDATE;LowQD	AC=6;AF=1.00;AN=6;BaseQRankSum=-1.754;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=4.00;MQ0=93;MQRankSum=1.754;QD=0.78;ReadPosRankSum=1.300	GT:AD:DP:GQ:PL	1/1:22,5:27:3:27,3,0	1/1:18,3:21:3:27,3,0	./.	1/1:19,7:26:3:27,3,0
+1	137622	.	G	A	205.78	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=3.293;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.2395;MLEAC=5;MLEAF=0.625;MQ=9.64;MQ0=88;MQRankSum=1.385;QD=1.85;ReadPosRankSum=-0.954	GT:AD:DP:GQ:PL	0/1:27,4:31:55:55,0,103	0/1:14,7:21:56:56,0,82	0/1:23,7:30:17:46,0,17	1/1:21,8:29:9:82,9,0
+1	137825	.	G	A	1234.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=3.923;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.0622;MLEAC=4;MLEAF=0.500;MQ=25.80;MQ0=10;MQRankSum=0.757;QD=9.96;ReadPosRankSum=0.698	GT:AD:DP:GQ:PL	0/1:18,16:34:99:367,0,286	0/1:21,12:33:99:239,0,389	0/1:14,13:27:99:292,0,223	0/1:13,17:30:99:369,0,222
+1	138156	.	G	T	450.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=3.274;DP=117;Dels=0.00;FS=2.297;HaplotypeScore=0.9604;MLEAC=4;MLEAF=0.500;MQ=16.42;MQ0=53;MQRankSum=-0.722;QD=3.85;ReadPosRankSum=-2.151	GT:AD:DP:GQ:PL	0/1:26,8:34:64:64,0,254	0/1:25,13:39:99:222,0,324	0/1:9,7:16:85:85,0,85	0/1:18,9:27:57:112,0,57
+1	139058	.	C	G	422.32	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.684;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8025;MLEAC=3;MLEAF=0.375;MQ=39.65;MQ0=17;MQRankSum=-6.454;QD=4.18;ReadPosRankSum=1.712	GT:AD:DP:GQ:PL	0/0:24,6:30:12:0,12,643	0/1:17,10:27:88:88,0,461	0/1:23,13:36:99:224,0,558	0/1:19,19:38:99:144,0,513
+1	139781	.	G	A	153.56	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=13.92;MQ0=7;QD=8.53	GT:AD:DP:GQ:PL	./.	1/1:0,5:5:3:26,3,0	1/1:0,8:8:12:104,12,0	1/1:0,5:5:6:48,6,0
+1	139967	.	T	C	115.39	HARD_TO_VALIDATE	AC=5;AF=0.833;AN=6;BaseQRankSum=-0.592;DP=42;Dels=0.00;FS=6.690;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=13.36;MQ0=26;MQRankSum=1.775;QD=3.61;ReadPosRankSum=-2.451	GT:AD:DP:GQ:PL	./.	1/1:6,7:13:3:34,3,0	1/1:2,6:8:6:69,6,0	0/1:3,8:11:14:40,0,14
+1	157259	.	G	A	1029.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.592;DP=111;Dels=0.00;FS=7.876;HaplotypeScore=0.2892;MLEAC=4;MLEAF=0.500;MQ=19.60;MQ0=16;MQRankSum=-0.343;QD=9.28;ReadPosRankSum=0.526	GT:AD:DP:GQ:PL	0/1:14,10:25:99:188,0,182	0/1:15,16:31:99:293,0,217	0/1:14,11:25:99:209,0,179	0/1:12,18:30:99:372,0,113
+1	165027	.	A	G	62.22	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.793;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=6.52;MQ0=92;MQRankSum=0.244;QD=0.60;ReadPosRankSum=2.533	GT:AD:DP:GQ:PL	0/1:20,8:28:16:40,0,16	0/1:23,3:26:19:19,0,19	0/1:19,2:21:19:19,0,19	0/1:21,8:29:16:16,0,40
+1	167668	.	G	A	93.43	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.500;AN=6;BaseQRankSum=2.843;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.500;MQ=7.32;MQ0=95;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.813	GT:AD:DP:GQ:PL	./.	0/1:23,8:31:38:66,0,38	0/1:18,4:22:19:19,0,21	0/1:24,9:33:38:38,0,64
+1	167698	.	C	T	221.47	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=0.713;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.2167;MLEAC=5;MLEAF=0.625;MQ=9.13;MQ0=105;MQRankSum=0.651;QD=1.72;ReadPosRankSum=-0.093	GT:AD:DP:GQ:PL	1/1:23,4:27:3:26,3,0	0/1:28,11:39:51:134,0,51	0/1:21,6:28:39:39,0,41	0/1:26,8:35:54:54,0,106
+1	167769	.	G	A	35.37	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=3.712;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=1.0589;MLEAC=3;MLEAF=0.375;MQ=10.78;MQ0=111;MQRankSum=0.641;QD=0.32;ReadPosRankSum=-0.135	GT:AD:DP:GQ:PL	0/1:30,3:33:6:6,0,137	0/1:38,8:46:56:56,0,105	0/1:26,5:31:5:5,0,132	0/0:41,2:43:16:0,16,317
+1	172877	.	G	C	60.28	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.984;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=8.46;MQ0=83;MQRankSum=-2.835;QD=1.44;ReadPosRankSum=-2.025	GT:AD:DP:GQ:PL	0/0:31,3:34:9:0,9,81	1/1:17,4:21:6:55,6,0	0/0:14,8:22:9:0,9,89	0/1:15,6:21:41:41,0,47
+1	173098	.	C	T	429.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=4.288;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.4322;MLEAC=4;MLEAF=0.500;MQ=15.11;MQ0=60;MQRankSum=-3.209;QD=3.80;ReadPosRankSum=-0.104	GT:AD:DP:GQ:PL	0/1:15,11:26:89:89,0,92	0/1:23,11:34:99:162,0,106	0/1:17,6:24:47:47,0,222	0/1:14,15:29:82:164,0,82
+1	174217	.	G	A	174.08	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=3.510;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=9.38;MQ0=72;MQRankSum=-0.400;QD=1.93;ReadPosRankSum=-0.133	GT:AD:DP:GQ:PL	0/1:15,4:20:49:80,0,49	0/1:19,6:25:19:19,0,43	0/1:19,2:21:19:39,0,19	0/1:21,3:24:16:68,0,16
+1	174302	.	G	A	57.58	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.383;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=5.93;MQ0=106;MQRankSum=-0.741;QD=0.64;ReadPosRankSum=1.447	GT:AD:DP:GQ:PL	0/0:25,1:26:3:0,3,22	0/1:30,6:36:18:18,0,44	1/1:22,5:27:3:27,3,0	0/1:21,6:27:19:44,0,19
+1	227919	.	A	T	87.26	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=0.742;DP=14;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=7;MLEAF=0.875;MQ=16.18;MQ0=7;MQRankSum=0.742;QD=6.23;ReadPosRankSum=-0.742	GT:AD:DP:GQ:PL	1/1:0,3:3:3:34,3,0	1/1:0,3:3:3:30,3,0	1/1:0,2:2:3:30,3,0	0/1:1,5:6:20:21,0,20
+1	229673	.	A	C	453.20	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=19.34;MQ0=19;QD=11.05	GT:AD:DP:GQ:PL	1/1:0,8:8:6:58,6,0	1/1:0,14:14:21:210,21,0	1/1:0,7:7:3:28,3,0	1/1:0,12:12:18:182,18,0
+1	229868	.	C	T	193.97	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.259;DP=128;Dels=0.00;FS=18.115;HaplotypeScore=1.6735;MLEAC=4;MLEAF=0.500;MQ=25.99;MQ0=20;MQRankSum=-0.551;QD=1.52;ReadPosRankSum=-1.793	GT:AD:DP:GQ:PL	0/1:22,4:26:62:62,0,353	0/1:26,8:34:99:104,0,515	0/1:26,6:32:20:20,0,499	0/1:27,9:36:40:40,0,549
+1	230047	.	A	T	657.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.246;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5188;MLEAC=4;MLEAF=0.500;MQ=26.51;MQ0=13;MQRankSum=0.103;QD=5.31;ReadPosRankSum=3.365	GT:AD:DP:GQ:PL	0/1:17,9:26:99:161,0,338	0/1:15,13:28:99:267,0,265	0/1:25,10:35:99:147,0,542	0/1:25,10:35:99:115,0,520
+1	230058	.	T	G	2676.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.4247;MLEAC=8;MLEAF=1.00;MQ=25.00;MQ0=18;QD=21.76	GT:AD:DP:GQ:PL	1/1:0,26:26:66:635,66,0	1/1:0,27:27:63:594,63,0	1/1:0,32:32:75:744,75,0	1/1:0,38:38:78:729,78,0
+1	231054	.	T	A	338.90	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.386;DP=192;Dels=0.00;FS=1.949;HaplotypeScore=2.4939;MLEAC=3;MLEAF=0.375;MQ=16.76;MQ0=80;MQRankSum=2.301;QD=2.12;ReadPosRankSum=3.705	GT:AD:DP:GQ:PL	0/0:27,5:32:36:0,36,322	0/1:43,10:53:99:136,0,488	0/1:45,11:56:99:135,0,510	0/1:44,7:51:99:102,0,552
+1	231070	.	A	T	143.45	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.698;DP=197;Dels=0.00;FS=24.252;HaplotypeScore=0.4314;MLEAC=3;MLEAF=0.375;MQ=18.20;MQ0=53;MQRankSum=-5.929;QD=1.00;ReadPosRankSum=-3.813	GT:AD:DP:GQ:PL	0/1:19,8:27:36:36,0,257	0/1:42,19:61:99:138,0,722	0/1:45,11:56:1:1,0,753	0/0:42,11:53:28:0,28,789
+1	231091	.	G	C	192.55	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=5.040;DP=192;Dels=0.00;FS=17.031;HaplotypeScore=1.0694;MLEAC=4;MLEAF=0.500;MQ=16.86;MQ0=62;MQRankSum=-5.583;QD=1.44;ReadPosRankSum=1.377	GT:AD:DP:GQ:PL	0/1:16,11:27:51:51,0,135	0/1:40,18:58:99:156,0,552	0/1:36,13:49:16:16,0,613	0/0:45,13:58:1:0,1,525
+1	231123	.	A	G	260.04	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=3.077;DP=221;Dels=0.00;FS=4.823;HaplotypeScore=1.8792;MLEAC=3;MLEAF=0.375;MQ=13.53;MQ0=116;MQRankSum=-4.524;QD=1.71;ReadPosRankSum=2.924	GT:AD:DP:GQ:PL	0/1:33,11:44:54:54,0,111	0/1:41,18:59:99:192,0,271	0/1:35,13:49:46:46,0,368	0/0:57,12:69:4:0,4,559
+1	231142	.	C	G	292.05	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.666;DP=233;Dels=0.00;FS=5.057;HaplotypeScore=0.7727;MLEAC=4;MLEAF=0.500;MQ=11.94;MQ0=146;MQRankSum=-2.375;QD=1.25;ReadPosRankSum=0.608	GT:AD:DP:GQ:PL	0/1:40,8:49:57:57,0,86	0/1:55,13:68:99:195,0,244	0/1:41,10:51:58:58,0,272	0/1:58,7:65:14:14,0,415
+1	231175	.	T	G	625.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.854;DP=314;Dels=0.00;FS=59.302;HaplotypeScore=1.0238;MLEAC=4;MLEAF=0.500;MQ=10.60;MQ0=228;MQRankSum=0.111;QD=1.99;ReadPosRankSum=-0.805	GT:AD:DP:GQ:PL	0/1:55,14:69:35:35,0,85	0/1:64,34:98:99:325,0,281	0/1:41,19:60:99:177,0,181	0/1:70,17:87:99:121,0,295
+1	231205	.	T	A	1267.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.715;DP=388;Dels=0.00;FS=112.989;HaplotypeScore=1.0550;MLEAC=4;MLEAF=0.500;MQ=13.36;MQ0=219;MQRankSum=1.522;QD=3.27;ReadPosRankSum=1.112	GT:AD:DP:GQ:PL	0/1:53,24:79:99:211,0,132	0/1:68,48:116:99:511,0,462	0/1:55,30:85:99:277,0,493	0/1:79,29:108:99:301,0,517
+1	231214	.	C	A	1693.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.490;DP=411;Dels=0.00;FS=134.741;HaplotypeScore=1.6632;MLEAC=4;MLEAF=0.500;MQ=14.14;MQ0=211;MQRankSum=2.065;QD=4.12;ReadPosRankSum=-0.877	GT:AD:DP:GQ:PL	0/1:51,34:85:99:370,0,134	0/1:68,53:121:99:570,0,547	0/1:55,37:92:99:393,0,501	0/1:79,34:113:99:393,0,529
+1	231229	.	C	A	2104.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.248;DP=428;Dels=0.00;FS=158.513;HaplotypeScore=2.4640;MLEAC=4;MLEAF=0.500;MQ=15.15;MQ0=194;MQRankSum=4.874;QD=4.92;ReadPosRankSum=-1.606	GT:AD:DP:GQ:PL	0/1:52,38:90:99:481,0,190	0/1:63,58:121:99:685,0,554	0/1:54,43:97:99:476,0,584	0/1:79,38:118:99:495,0,604
+1	231246	.	T	C	2657.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.163;DP=443;Dels=0.00;FS=180.862;HaplotypeScore=0.8971;MLEAC=4;MLEAF=0.500;MQ=16.32;MQ0=169;MQRankSum=2.022;QD=6.00;ReadPosRankSum=-0.190	GT:AD:DP:GQ:PL	0/1:50,44:94:99:700,0,275	0/1:57,60:117:99:757,0,590	0/1:57,47:104:99:559,0,693	0/1:82,46:128:99:674,0,700
+1	231296	.	C	T	199.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.625;DP=382;Dels=0.00;FS=33.695;HaplotypeScore=2.6855;MLEAC=3;MLEAF=0.375;MQ=17.47;MQ0=127;MQRankSum=1.789;QD=0.71;ReadPosRankSum=1.801	GT:AD:DP:GQ:PL	0/0:92,7:99:50:0,50,1402	0/1:90,12:102:48:48,0,1088	0/1:74,10:84:47:47,0,1002	0/1:83,14:97:99:139,0,1093
+1	231480	.	G	C	731.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-10.527;DP=477;Dels=0.00;FS=6.608;HaplotypeScore=5.1775;MLEAC=4;MLEAF=0.500;MQ=20.20;MQ0=112;MQRankSum=-1.146;QD=1.53;ReadPosRankSum=1.801	GT:AD:DP:GQ:PL	0/1:91,19:110:99:205,0,1325	0/1:104,32:136:99:226,0,1865	0/1:93,19:112:99:122,0,1657	0/1:95,22:117:99:211,0,1504
+1	231504	.	G	A	3721.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=4.992;DP=526;Dels=0.00;FS=1.638;HaplotypeScore=3.6062;MLEAC=4;MLEAF=0.500;MQ=22.19;MQ0=51;MQRankSum=-2.397;QD=7.08;ReadPosRankSum=0.057	GT:AD:DP:GQ:PL	0/1:69,50:119:99:860,0,1198	0/1:85,70:156:99:1190,0,1512	0/1:70,58:128:99:1059,0,1265	0/1:80,43:123:99:645,0,1504
+1	231526	.	C	T	1021.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.980;DP=486;Dels=0.00;FS=4.227;HaplotypeScore=3.4683;MLEAC=4;MLEAF=0.500;MQ=22.53;MQ0=55;MQRankSum=-0.401;QD=2.10;ReadPosRankSum=-1.011	GT:AD:DP:GQ:PL	0/1:82,27:110:99:352,0,1655	0/1:116,25:141:99:212,0,2265	0/1:99,22:121:99:197,0,2036	0/1:88,26:114:99:293,0,1864
+1	232501	.	A	T	268.12	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.898;DP=175;Dels=0.01;FS=26.068;HaplotypeScore=0.7664;MLEAC=4;MLEAF=0.500;MQ=25.58;MQ0=48;MQRankSum=-2.777;QD=1.53;ReadPosRankSum=0.818	GT:AD:DP:GQ:PL	0/1:23,7:30:12:12,0,410	0/1:33,14:47:24:24,0,682	0/1:22,26:48:99:122,0,483	0/1:21,27:48:99:142,0,391
+1	232648	.	C	T	121.15	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.151;DP=238;Dels=0.00;FS=10.333;HaplotypeScore=0.2167;MLEAC=3;MLEAF=0.375;MQ=10.03;MQ0=188;MQRankSum=-1.035;QD=0.64;ReadPosRankSum=-0.291	GT:AD:DP:GQ:PL	0/1:42,5:48:15:15,0,102	0/1:61,6:67:41:41,0,277	0/0:41,7:49:18:0,18,177	0/1:65,9:74:99:99,0,211
+1	232744	.	A	G	171.94	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.171;DP=324;Dels=0.00;FS=44.471;HaplotypeScore=2.1574;MLEAC=3;MLEAF=0.375;MQ=20.82;MQ0=117;MQRankSum=-2.401;QD=0.71;ReadPosRankSum=-1.637	GT:AD:DP:GQ:PL	0/1:58,8:66:85:85,0,843	0/0:70,11:81:23:0,23,1147	0/1:71,11:82:68:68,0,906	0/1:81,14:95:53:53,0,1102
+1	232752	.	G	C	92.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.446;DP=317;Dels=0.00;FS=39.427;HaplotypeScore=2.3769;MLEAC=3;MLEAF=0.375;MQ=21.01;MQ0=121;MQRankSum=-2.894;QD=0.39;ReadPosRankSum=-1.224	GT:AD:DP:GQ:PL	0/1:59,5:64:34:34,0,853	0/0:71,9:80:42:0,42,1098	0/1:72,10:82:62:62,0,948	0/1:79,12:91:31:31,0,1076
+1	232756	.	A	G	34.61	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-6.285;DP=312;Dels=0.00;FS=30.832;HaplotypeScore=2.6064;MLEAC=1;MLEAF=0.125;MQ=21.04;MQ0=121;MQRankSum=-2.344;QD=0.44;ReadPosRankSum=-1.149	GT:AD:DP:GQ:PL	0/0:59,4:64:19:0,19,868	0/0:72,7:79:48:0,48,1137	0/1:69,10:79:66:66,0,874	0/0:79,11:90:10:0,10,1084
+1	232930	.	C	G	301.42	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.364;DP=355;Dels=0.00;FS=20.434;HaplotypeScore=4.7651;MLEAC=3;MLEAF=0.375;MQ=21.86;MQ0=107;MQRankSum=-4.614;QD=1.04;ReadPosRankSum=-1.944	GT:AD:DP:GQ:PL	0/1:66,16:83:99:100,0,940	0/1:82,14:96:70:70,0,1414	0/0:53,12:65:11:0,11,994	0/1:89,22:111:99:165,0,1576
+1	232955	.	G	T	461.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.591;DP=357;Dels=0.00;FS=8.542;HaplotypeScore=39.7716;MLEAC=4;MLEAF=0.500;MQ=22.95;MQ0=71;MQRankSum=-5.146;QD=1.29;ReadPosRankSum=1.488	GT:AD:DP:GQ:PL	0/1:67,18:86:99:126,0,1207	0/1:80,18:98:82:82,0,1693	0/1:50,14:64:34:34,0,987	0/1:84,25:109:99:252,0,1601
+1	232960	.	C	A	710.24	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=0.901;DP=358;Dels=0.00;FS=0.570;HaplotypeScore=39.4919;MLEAC=3;MLEAF=0.375;MQ=22.97;MQ0=62;MQRankSum=-0.871;QD=2.60;ReadPosRankSum=-1.935	GT:AD:DP:GQ:PL	0/0:71,14:85:13:0,13,1294	0/1:69,26:95:99:367,0,1362	0/1:51,16:67:99:181,0,893	0/1:83,28:111:99:196,0,1690
+1	232961	.	T	C	386.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.141;DP=356;Dels=0.00;FS=8.551;HaplotypeScore=40.0524;MLEAC=4;MLEAF=0.500;MQ=23.02;MQ0=60;MQRankSum=-4.779;QD=1.09;ReadPosRankSum=3.943	GT:AD:DP:GQ:PL	0/1:65,19:84:99:129,0,1176	0/1:78,15:93:70:70,0,1665	0/1:53,14:67:28:28,0,1051	0/1:86,23:109:99:192,0,1706
+1	232962	.	G	A	384.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.068;DP=357;Dels=0.00;FS=7.350;HaplotypeScore=40.5673;MLEAC=4;MLEAF=0.500;MQ=23.05;MQ0=59;MQRankSum=-4.831;QD=1.08;ReadPosRankSum=4.224	GT:AD:DP:GQ:PL	0/1:66,19:85:99:126,0,1201	0/1:79,15:94:70:70,0,1665	0/1:52,14:67:28:28,0,1033	0/1:87,23:111:99:193,0,1698
+1	233056	.	C	G	34.34	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-3.661;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=2.9727;MLEAC=1;MLEAF=0.125;MQ=16.24;MQ0=132;MQRankSum=-3.067;QD=0.56;ReadPosRankSum=1.935	GT:AD:DP:GQ:PL	0/0:59,5:64:78:0,78,742	0/0:57,3:60:49:0,49,692	0/1:52,9:61:66:66,0,430	0/0:75,4:79:51:0,51,938
+1	233086	.	G	A	1298.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.855;DP=245;Dels=0.00;FS=9.376;HaplotypeScore=1.2269;MLEAC=4;MLEAF=0.500;MQ=17.57;MQ0=128;MQRankSum=-0.955;QD=5.30;ReadPosRankSum=1.386	GT:AD:DP:GQ:PL	0/1:33,25:58:99:236,0,285	0/1:34,31:65:99:440,0,281	0/1:28,23:51:99:236,0,266	0/1:43,28:71:99:419,0,395
+1	233913	.	A	G	60.21	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.350;DP=256;Dels=0.00;FS=5.563;HaplotypeScore=0.4079;MLEAC=3;MLEAF=0.375;MQ=6.52;MQ0=232;MQRankSum=-0.953;QD=0.31;ReadPosRankSum=1.334	GT:AD:DP:GQ:PL	0/0:53,10:63:9:0,9,82	0/1:49,9:58:12:12,0,104	0/1:55,13:68:12:12,0,97	0/1:56,10:66:38:69,0,38
+1	234378	.	A	G	611.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-9.587;DP=396;Dels=0.00;FS=7.812;HaplotypeScore=2.5533;MLEAC=4;MLEAF=0.500;MQ=30.27;MQ0=73;MQRankSum=-3.938;QD=1.55;ReadPosRankSum=1.196	GT:AD:DP:GQ:PL	0/1:75,29:104:99:183,0,1613	0/1:88,24:112:99:185,0,2096	0/1:68,23:91:99:116,0,1455	0/1:64,23:87:99:160,0,1343
+1	234432	.	A	G	215.90	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-7.042;DP=317;Dels=0.00;FS=46.402;HaplotypeScore=2.4109;MLEAC=3;MLEAF=0.375;MQ=33.26;MQ0=24;MQRankSum=-3.723;QD=0.88;ReadPosRankSum=-3.365	GT:AD:DP:GQ:PL	0/1:64,18:83:74:74,0,1580	0/1:59,15:74:61:61,0,1535	0/0:58,13:71:76:0,76,1557	0/1:67,22:89:99:115,0,1649
+1	234466	.	C	T	409.91	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.584;DP=317;Dels=0.00;FS=18.056;HaplotypeScore=2.6981;MLEAC=3;MLEAF=0.375;MQ=31.23;MQ0=44;MQRankSum=-3.368;QD=1.82;ReadPosRankSum=2.504	GT:AD:DP:GQ:PL	0/1:64,12:76:99:165,0,1334	0/1:73,11:84:94:94,0,1476	0/1:52,13:65:99:185,0,967	0/0:80,12:92:30:0,30,1676
+1	234481	.	T	A	1828.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.618;DP=317;Dels=0.00;FS=58.108;HaplotypeScore=3.3352;MLEAC=4;MLEAF=0.500;MQ=30.16;MQ0=65;MQRankSum=-3.407;QD=5.77;ReadPosRankSum=3.442	GT:AD:DP:GQ:PL	0/1:42,34:76:99:494,0,895	0/1:42,36:80:99:515,0,864	0/1:40,24:64:99:164,0,855	0/1:52,45:97:99:688,0,797
+1	234575	.	C	T	37.33	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=0.338;DP=329;Dels=0.00;FS=49.010;HaplotypeScore=0.9948;MLEAC=1;MLEAF=0.125;MQ=24.28;MQ0=91;MQRankSum=-4.898;QD=0.42;ReadPosRankSum=0.887	GT:AD:DP:GQ:PL	0/0:63,6:69:90:0,90,1411	0/0:64,8:72:73:0,73,1494	0/1:71,16:88:69:69,0,1258	0/0:90,9:99:40:0,40,1552
+1	234609	.	T	C	333.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.263;DP=369;Dels=0.00;FS=9.060;HaplotypeScore=4.5467;MLEAC=3;MLEAF=0.375;MQ=25.88;MQ0=84;MQRankSum=2.126;QD=1.21;ReadPosRankSum=0.265	GT:AD:DP:GQ:PL	0/1:63,10:74:99:117,0,1118	0/1:83,13:96:91:91,0,1749	0/0:86,5:92:47:0,47,1584	0/1:91,15:106:99:160,0,1700
+1	234760	.	A	T	314.91	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.557;DP=204;Dels=0.00;FS=61.961;HaplotypeScore=3.0355;MLEAC=3;MLEAF=0.375;MQ=26.69;MQ0=39;MQRankSum=-3.605;QD=1.89;ReadPosRankSum=-3.067	GT:AD:DP:GQ:PL	0/0:25,11:37:34:0,34,668	0/1:35,19:54:99:115,0,927	0/1:24,25:49:99:191,0,582	0/1:45,18:63:43:43,0,1136
+1	235012	.	G	A	555.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.825;DP=274;Dels=0.00;FS=19.891;HaplotypeScore=0.2080;MLEAC=4;MLEAF=0.500;MQ=14.94;MQ0=166;MQRankSum=1.089;QD=2.03;ReadPosRankSum=-1.238	GT:AD:DP:GQ:PL	0/1:57,13:70:99:164,0,336	0/1:73,13:86:99:134,0,611	0/1:38,9:47:87:87,0,272	0/1:57,14:71:99:203,0,282
+1	235844	.	C	G	2245.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.452;DP=395;Dels=0.00;FS=3.548;HaplotypeScore=2.5349;MLEAC=4;MLEAF=0.500;MQ=19.25;MQ0=181;MQRankSum=1.141;QD=5.69;ReadPosRankSum=-2.814	GT:AD:DP:GQ:PL	0/1:67,35:104:99:753,0,686	0/1:63,30:93:99:519,0,476	0/1:67,23:90:99:345,0,724	0/1:64,43:107:99:661,0,494
+1	235929	.	G	A	837.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=6.671;DP=220;Dels=0.00;FS=49.873;HaplotypeScore=1.1223;MLEAC=4;MLEAF=0.500;MQ=31.15;MQ0=27;MQRankSum=-9.545;QD=3.81;ReadPosRankSum=-0.147	GT:AD:DP:GQ:PL	0/1:33,18:51:99:102,0,846	0/1:38,26:64:99:254,0,911	0/1:28,22:50:99:241,0,686	0/1:30,25:55:99:273,0,743
+1	235976	.	C	A	3069.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.045;DP=271;Dels=0.00;FS=3.956;HaplotypeScore=2.1549;MLEAC=4;MLEAF=0.500;MQ=28.73;MQ0=46;MQRankSum=8.503;QD=11.33;ReadPosRankSum=1.000	GT:AD:DP:GQ:PL	0/1:32,34:66:99:908,0,361	0/1:41,27:68:99:625,0,597	0/1:34,21:55:99:558,0,475	0/1:43,39:82:99:1011,0,607
+1	236793	.	T	C	142.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.712;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=0.2367;MLEAC=4;MLEAF=0.500;MQ=8.10;MQ0=273;MQRankSum=-0.821;QD=0.45;ReadPosRankSum=-0.654	GT:AD:DP:GQ:PL	0/1:68,12:80:40:40,0,60	0/1:78,10:89:32:32,0,312	0/1:54,9:63:76:76,0,157	0/1:79,5:84:27:27,0,143
+1	236848	.	T	C	221.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.438;DP=317;Dels=0.00;FS=0.000;HaplotypeScore=1.3662;MLEAC=4;MLEAF=0.500;MQ=10.45;MQ0=244;MQRankSum=0.132;QD=0.70;ReadPosRankSum=2.181	GT:AD:DP:GQ:PL	0/1:66,9:75:49:49,0,174	0/1:80,10:90:93:93,0,394	0/1:57,8:65:82:82,0,296	0/1:75,12:87:30:30,0,302
+1	237272	.	T	A	547.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.596;DP=299;Dels=0.00;FS=0.000;HaplotypeScore=3.2050;MLEAC=4;MLEAF=0.500;MQ=22.45;MQ0=43;MQRankSum=-1.986;QD=1.83;ReadPosRankSum=0.229	GT:AD:DP:GQ:PL	0/1:54,11:65:99:148,0,998	0/1:65,16:81:99:217,0,1120	0/1:59,12:71:99:111,0,1294	0/1:69,12:81:99:104,0,1148
+1	237448	.	T	G	166.91	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.257;DP=226;Dels=0.00;FS=4.521;HaplotypeScore=3.5900;MLEAC=4;MLEAF=0.500;MQ=18.70;MQ0=96;MQRankSum=-2.139;QD=0.74;ReadPosRankSum=-0.424	GT:AD:DP:GQ:PL	0/1:38,3:45:4:4,0,404	0/1:48,7:61:43:43,0,630	0/1:42,6:54:76:76,0,635	0/1:48,8:66:75:75,0,621
+1	237490	.	C	A	382.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.238;DP=201;Dels=0.00;FS=0.821;HaplotypeScore=5.2048;MLEAC=4;MLEAF=0.500;MQ=22.57;MQ0=54;MQRankSum=-1.240;QD=1.91;ReadPosRankSum=0.233	GT:AD:DP:GQ:PL	0/1:35,6:41:52:52,0,565	0/1:50,11:61:95:95,0,697	0/1:44,7:52:99:124,0,596	0/1:36,10:47:99:144,0,570
+1	237505	.	T	C	179.92	HARD_TO_VALIDATE	AC=2;AF=0.250;AN=8;BaseQRankSum=-3.018;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=3.8204;MLEAC=2;MLEAF=0.250;MQ=23.45;MQ0=50;MQRankSum=1.582;QD=2.04;ReadPosRankSum=-0.505	GT:AD:DP:GQ:PL	0/1:29,7:36:98:98,0,447	0/0:50,4:55:25:0,25,720	0/1:40,10:52:99:116,0,596	0/0:50,5:56:58:0,58,975
+1	237752	.	A	G	234.97	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.439;DP=203;Dels=0.00;FS=92.481;HaplotypeScore=2.9828;MLEAC=4;MLEAF=0.500;MQ=27.44;MQ0=21;MQRankSum=-3.539;QD=1.16;ReadPosRankSum=-1.453	GT:AD:DP:GQ:PL	0/1:30,9:39:97:97,0,667	0/1:44,13:57:68:68,0,1015	0/1:42,16:58:82:82,0,933	0/1:42,7:49:20:20,0,889
+1	237794	.	C	T	326.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=5.187;DP=295;Dels=0.00;FS=40.713;HaplotypeScore=1.9875;MLEAC=3;MLEAF=0.375;MQ=29.74;MQ0=48;MQRankSum=-0.013;QD=1.48;ReadPosRankSum=-0.633	GT:AD:DP:GQ:PL	0/1:49,8:57:99:119,0,852	0/0:71,3:74:95:0,95,1369	0/1:67,8:75:89:89,0,1103	0/1:79,10:89:99:153,0,1353
+1	237805	.	A	G	534.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.015;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=2.5458;MLEAC=4;MLEAF=0.500;MQ=29.26;MQ0=45;MQRankSum=-3.184;QD=1.78;ReadPosRankSum=-2.425	GT:AD:DP:GQ:PL	0/1:43,12:57:99:137,0,852	0/1:63,14:77:49:49,0,1328	0/1:61,15:76:86:86,0,1277	0/1:67,23:90:99:295,0,1438
+1	237881	.	G	T	405.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.130;DP=237;Dels=0.00;FS=50.608;HaplotypeScore=3.3633;MLEAC=4;MLEAF=0.500;MQ=28.65;MQ0=44;MQRankSum=-2.356;QD=1.71;ReadPosRankSum=-6.076	GT:AD:DP:GQ:PL	0/1:33,16:49:54:54,0,807	0/1:37,21:59:70:70,0,919	0/1:38,25:63:99:169,0,1005	0/1:46,20:66:99:145,0,1074
+1	238216	.	A	C	86.96	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.403;DP=234;Dels=0.00;FS=0.825;HaplotypeScore=2.3781;MLEAC=2;MLEAF=0.250;MQ=21.26;MQ0=51;MQRankSum=-3.446;QD=0.74;ReadPosRankSum=-2.197	GT:AD:DP:GQ:PL	0/0:52,6:58:35:0,35,1135	0/1:47,9:56:84:84,0,739	0/0:49,9:58:19:0,19,996	0/1:49,13:62:37:37,0,1017
+1	238267	.	C	T	910.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.839;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.5836;MLEAC=4;MLEAF=0.500;MQ=25.70;MQ0=39;MQRankSum=-5.122;QD=4.70;ReadPosRankSum=-1.545	GT:AD:DP:GQ:PL	0/1:27,20:47:99:236,0,609	0/1:32,16:48:99:140,0,783	0/1:27,23:50:99:216,0,620	0/1:26,23:49:99:351,0,508
+1	239164	.	G	A	59.20	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.648;DP=129;Dels=0.00;FS=1.859;HaplotypeScore=0.6938;MLEAC=3;MLEAF=0.375;MQ=12.62;MQ0=89;MQRankSum=-1.943;QD=0.55;ReadPosRankSum=-0.551	GT:AD:DP:GQ:PL	0/0:20,0:21:15:0,15,145	0/1:31,8:39:18:18,0,245	0/1:20,7:28:24:24,0,168	0/1:31,10:41:51:51,0,174
+1	239532	.	C	T	428.73	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.152;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.1146;MLEAC=4;MLEAF=0.500;MQ=12.38;MQ0=73;MQRankSum=0.992;QD=4.01;ReadPosRankSum=-0.430	GT:AD:DP:GQ:PL	0/1:12,7:19:5:121,0,5	0/1:17,11:28:53:134,0,53	0/1:17,12:29:88:91,0,88	0/1:16,15:31:60:114,0,60
+1	240147	.	C	T	108.39	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.862;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=12.19;MQ0=111;MQRankSum=-0.602;QD=0.70;ReadPosRankSum=1.078	GT:AD:DP:GQ:PL	0/1:33,5:38:36:36,0,117	0/1:38,11:49:39:39,0,319	0/1:18,4:22:62:62,0,119	0/1:42,4:46:2:2,0,199
+1	240853	.	G	A	57.95	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.671;DP=166;Dels=0.00;FS=8.789;HaplotypeScore=0.6714;MLEAC=2;MLEAF=0.250;MQ=23.03;MQ0=46;MQRankSum=-3.663;QD=0.75;ReadPosRankSum=0.382	GT:AD:DP:GQ:PL	0/1:29,5:34:39:39,0,536	0/0:45,7:52:20:0,20,783	0/0:34,3:37:66:0,66,660	0/1:31,12:43:53:53,0,499
+1	240898	.	T	G	237.93	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-6.776;DP=153;Dels=0.00;FS=15.219;HaplotypeScore=0.7169;MLEAC=3;MLEAF=0.375;MQ=19.27;MQ0=65;MQRankSum=-3.215;QD=1.86;ReadPosRankSum=2.075	GT:AD:DP:GQ:PL	0/1:27,13:40:99:139,0,397	0/1:41,12:53:44:44,0,524	0/0:21,4:25:24:0,24,239	0/1:26,9:35:89:89,0,273
+1	241263	.	C	T	123.91	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=5.364;DP=160;Dels=0.00;FS=11.735;HaplotypeScore=3.0928;MLEAC=3;MLEAF=0.375;MQ=29.30;MQ0=6;MQRankSum=-1.004;QD=1.08;ReadPosRankSum=-1.950	GT:AD:DP:GQ:PL	0/1:21,3:24:34:34,0,357	0/0:40,5:45:37:0,37,962	0/1:46,5:51:28:28,0,932	0/1:32,8:40:96:96,0,650
+1	241369	.	C	T	1204.39	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5471;MLEAC=8;MLEAF=1.00;MQ=26.78;MQ0=16;QD=18.25	GT:AD:DP:GQ:PL	1/1:0,12:12:15:160,15,0	1/1:0,13:13:24:235,24,0	1/1:0,15:15:33:340,33,0	1/1:0,25:25:48:495,48,0
+1	242426	.	G	A	191.05	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.330;DP=148;Dels=0.00;FS=11.247;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=11.21;MQ0=113;MQRankSum=-0.678;QD=1.29;ReadPosRankSum=-1.338	GT:AD:DP:GQ:PL	0/1:30,7:37:66:95,0,66	0/1:25,5:30:14:14,0,212	0/1:32,11:43:54:54,0,140	0/1:32,6:38:60:60,0,115
+1	243396	.	A	G	147.70	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-6.752;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=1.0286;MLEAC=3;MLEAF=0.375;MQ=16.06;MQ0=78;MQRankSum=-0.003;QD=0.98;ReadPosRankSum=-0.241	GT:AD:DP:GQ:PL	0/0:43,5:49:9:0,9,554	0/1:45,10:55:86:86,0,498	0/1:39,10:49:45:45,0,501	0/1:38,8:46:50:50,0,428
+1	244272	.	T	A	74.33	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.779;DP=186;Dels=0.00;FS=2.650;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=15.47;MQ0=102;MQRankSum=0.655;QD=0.40;ReadPosRankSum=0.866	GT:AD:DP:GQ:PL	0/1:40,10:50:25:25,0,427	0/1:44,13:57:65:65,0,519	0/1:32,6:38:3:3,0,372	0/1:39,2:41:12:12,0,314
+1	244288	.	A	G	339.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.014;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=4;MLEAF=0.500;MQ=14.20;MQ0=93;MQRankSum=-0.361;QD=2.25;ReadPosRankSum=0.393	GT:AD:DP:GQ:PL	0/1:24,15:39:99:109,0,136	0/1:31,20:51:99:160,0,308	0/1:22,8:30:74:74,0,193	0/1:25,6:31:29:29,0,160
+1	245268	.	T	A	142.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.116;DP=141;Dels=0.00;FS=4.630;HaplotypeScore=2.7232;MLEAC=3;MLEAF=0.375;MQ=20.53;MQ0=32;MQRankSum=-3.389;QD=1.35;ReadPosRankSum=-0.858	GT:AD:DP:GQ:PL	0/1:27,5:32:55:55,0,374	0/0:32,3:35:28:0,28,613	0/1:30,9:39:74:74,0,534	0/1:29,6:35:48:48,0,540
+1	245328	.	A	G	304.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.120;DP=113;Dels=0.00;FS=10.151;HaplotypeScore=17.4569;MLEAC=4;MLEAF=0.500;MQ=21.99;MQ0=22;MQRankSum=-2.860;QD=2.70;ReadPosRankSum=-0.869	GT:AD:DP:GQ:PL	0/1:15,6:21:90:90,0,112	0/1:23,5:28:49:49,0,360	0/1:28,8:36:80:80,0,525	0/1:21,7:28:99:118,0,375
+1	245894	.	G	A	129.35	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=4.488;DP=181;Dels=0.00;FS=2.602;HaplotypeScore=1.3879;MLEAC=3;MLEAF=0.375;MQ=10.32;MQ0=127;MQRankSum=-1.993;QD=0.92;ReadPosRankSum=1.378	GT:AD:DP:GQ:PL	0/1:34,9:43:68:68,0,162	0/1:36,6:42:21:21,0,163	0/0:33,8:41:12:0,12,109	0/1:41,14:55:74:74,0,151
+1	246977	.	A	C	261.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.761;DP=229;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=4;MLEAF=0.500;MQ=10.49;MQ0=164;MQRankSum=-1.935;QD=1.14;ReadPosRankSum=-0.047	GT:AD:DP:GQ:PL	0/1:40,18:58:99:140,0,240	0/1:40,15:55:44:44,0,162	0/1:37,14:51:53:53,0,78	0/1:43,22:65:57:57,0,211
+1	247428	.	G	T	1041.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.738;DP=191;Dels=0.00;FS=1.438;HaplotypeScore=1.8617;MLEAC=4;MLEAF=0.500;MQ=22.23;MQ0=42;MQRankSum=0.458;QD=5.46;ReadPosRankSum=0.097	GT:AD:DP:GQ:PL	0/1:26,12:39:99:164,0,392	0/1:21,15:36:99:159,0,361	0/1:36,21:58:99:377,0,581	0/1:30,28:58:99:374,0,455
+1	247585	.	G	A	361	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.794;DP=177;Dels=0.00;FS=63.132;HaplotypeScore=3.2009;MLEAC=4;MLEAF=0.500;MQ=23.32;MQ0=50;MQRankSum=-2.882;QD=2.04;ReadPosRankSum=-1.148	GT:AD:DP:GQ:PL	0/1:21,2:23:17:17,0,275	0/1:30,14:44:99:171,0,474	0/1:40,13:53:99:155,0,607	0/1:46,11:57:50:50,0,821
+1	248705	.	G	T	282.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.986;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=11.65;MQ0=136;MQRankSum=-0.258;QD=1.42;ReadPosRankSum=-0.450	GT:AD:DP:GQ:PL	0/1:29,13:42:30:30,0,132	0/1:50,10:60:53:53,0,291	0/1:36,15:51:99:178,0,154	0/1:40,6:46:54:54,0,262
+1	249558	.	C	T	54.49	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=3.826;DP=129;Dels=0.00;FS=68.386;HaplotypeScore=1.1506;MLEAC=2;MLEAF=0.250;MQ=19.26;MQ0=46;MQRankSum=-3.840;QD=0.80;ReadPosRankSum=-3.015	GT:AD:DP:GQ:PL	0/0:14,5:19:30:0,30,285	0/0:38,4:42:29:0,29,611	0/1:23,5:28:6:6,0,312	0/1:29,11:40:81:81,0,379
+1	249702	.	G	A	410.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.528;DP=181;Dels=0.00;FS=0.884;HaplotypeScore=2.6293;MLEAC=4;MLEAF=0.500;MQ=23.73;MQ0=37;MQRankSum=-5.972;QD=2.27;ReadPosRankSum=-1.403	GT:AD:DP:GQ:PL	0/1:29,17:46:99:128,0,573	0/1:25,15:40:99:137,0,465	0/1:33,11:44:94:94,0,682	0/1:37,14:51:84:84,0,726
+1	253129	.	G	C	401.07	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.234;DP=201;Dels=0.00;FS=25.347;HaplotypeScore=0.7048;MLEAC=3;MLEAF=0.375;MQ=21.05;MQ0=84;MQRankSum=-0.483;QD=2.67;ReadPosRankSum=2.124	GT:AD:DP:GQ:PL	0/1:43,6:50:93:93,0,408	0/1:32,13:45:99:196,0,380	0/0:47,4:51:16:0,16,644	0/1:42,13:55:99:146,0,642
+1	253779	.	C	A	131.38	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.197;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.6999;MLEAC=3;MLEAF=0.375;MQ=9.64;MQ0=148;MQRankSum=0.590;QD=0.93;ReadPosRankSum=0.787	GT:AD:DP:GQ:PL	0/0:26,9:35:6:0,6,59	0/1:36,9:45:29:29,0,207	0/1:35,10:45:44:44,0,74	0/1:43,8:51:91:91,0,120
+1	255633	.	A	G	708.51	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=14.86;MQ0=26;QD=9.08	GT:AD:DP:GQ:PL	1/1:0,19:19:18:176,18,0	1/1:0,20:21:27:252,27,0	1/1:0,18:18:9:80,9,0	1/1:0,20:20:24:226,24,0
+1	256498	.	A	G	1206.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.700;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=2.2717;MLEAC=4;MLEAF=0.500;MQ=23.92;MQ0=11;MQRankSum=0.260;QD=4.93;ReadPosRankSum=0.736	GT:AD:DP:GQ:PL	0/1:40,12:52:99:133,0,873	0/1:44,17:61:99:268,0,975	0/1:39,17:56:99:315,0,863	0/1:45,30:75:99:523,0,920
+1	256736	.	C	T	685.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=7.325;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=2.0460;MLEAC=4;MLEAF=0.500;MQ=19.47;MQ0=89;MQRankSum=0.305;QD=3.15;ReadPosRankSum=0.507	GT:AD:DP:GQ:PL	0/1:37,6:43:64:64,0,375	0/1:37,14:51:99:179,0,538	0/1:40,11:51:99:117,0,488	0/1:52,21:73:99:358,0,542
+1	256922	.	T	A	636.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.161;DP=209;Dels=0.00;FS=17.678;HaplotypeScore=0.3943;MLEAC=4;MLEAF=0.500;MQ=16.82;MQ0=132;MQRankSum=-0.982;QD=3.05;ReadPosRankSum=0.774	GT:AD:DP:GQ:PL	0/1:34,13:47:99:221,0,104	0/1:49,14:63:99:144,0,359	0/1:29,11:40:93:155,0,93	0/1:50,9:59:99:149,0,476
+1	257686	.	A	G	223.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.119;DP=142;Dels=0.00;FS=20.896;HaplotypeScore=0.6596;MLEAC=4;MLEAF=0.500;MQ=17.69;MQ0=99;MQRankSum=0.463;QD=1.58;ReadPosRankSum=-0.198	GT:AD:DP:GQ:PL	0/1:25,6:31:33:33,0,193	0/1:23,9:32:87:87,0,164	0/1:27,9:36:82:82,0,131	0/1:33,10:43:54:54,0,275
+1	257881	.	T	C	360.33	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.714;DP=198;Dels=0.00;FS=5.610;HaplotypeScore=1.2720;MLEAC=3;MLEAF=0.375;MQ=18.40;MQ0=76;MQRankSum=-0.771;QD=2.52;ReadPosRankSum=0.333	GT:AD:DP:GQ:PL	0/1:35,6:41:10:10,0,363	0/0:49,6:55:29:0,29,641	0/1:38,12:50:99:133,0,455	0/1:34,17:52:99:251,0,443
+1	258930	.	C	T	915.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6905;MLEAC=8;MLEAF=1.00;MQ=12.68;MQ0=42;QD=9.06	GT:AD:DP:GQ:PL	1/1:0,18:18:24:187,24,0	1/1:0,26:26:36:283,36,0	1/1:0,32:32:30:237,30,0	1/1:0,23:23:30:234,30,0
+1	356416	.	G	A	73.22	HARD_TO_VALIDATE	AC=2;AF=0.333;AN=6;BaseQRankSum=1.369;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.2447;MLEAC=2;MLEAF=0.333;MQ=11.03;MQ0=21;MQRankSum=0.660;QD=2.93;ReadPosRankSum=-1.200	GT:AD:DP:GQ:PL	0/1:9,2:11:16:40,0,16	0/1:8,6:14:13:62,0,13	./.	0/0:5,0:5:3:0,3,25
+1	364272	.	C	A	78.99	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.679;DP=93;Dels=0.00;FS=13.084;HaplotypeScore=0.4547;MLEAC=3;MLEAF=0.375;MQ=12.20;MQ0=63;MQRankSum=-1.539;QD=1.10;ReadPosRankSum=-1.493	GT:AD:DP:GQ:PL	0/1:19,2:21:19:19,0,46	0/0:16,5:21:27:0,27,244	0/1:17,7:24:19:46,0,19	0/1:23,4:27:48:48,0,191
+1	364378	.	T	G	84.33	HARD_TO_VALIDATE;LowQD	AC=6;AF=1.00;AN=6;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=5.01;MQ0=75;QD=1.22	GT:AD:DP:GQ:PL	./.	1/1:15,8:23:3:27,3,0	1/1:12,5:17:3:28,3,0	1/1:23,6:29:6:53,6,0
+1	384435	.	C	G	51.32	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.113;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.5197;MLEAC=2;MLEAF=0.250;MQ=7.33;MQ0=185;MQRankSum=-0.283;QD=0.44;ReadPosRankSum=1.491	GT:AD:DP:GQ:PL	0/1:58,11:69:16:70,0,16	0/1:43,5:48:13:13,0,85	0/0:51,0:51:12:0,12,112	0/0:46,8:54:3:0,3,43
+1	384512	.	C	G	44.07	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=0.500;AN=8;BaseQRankSum=2.259;DP=330;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=4;MLEAF=0.500;MQ=5.91;MQ0=274;MQRankSum=1.189;QD=0.17;ReadPosRankSum=-0.775	GT:AD:DP:GQ:PL	0/1:84,9:97:10:10,0,119	0/1:82,5:88:13:13,0,91	0/0:63,6:69:12:0,12,117	1/1:71,5:76:6:56,6,0
+1	404409	.	T	G	57.51	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=0.998;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=2;MLEAF=0.250;MQ=16.51;MQ0=31;MQRankSum=-1.418;QD=2.30;ReadPosRankSum=-0.788	GT:AD:DP:GQ:PL	0/0:10,1:11:6:0,6,53	0/0:9,2:11:9:0,9,103	0/1:7,2:9:27:57,0,27	1/1:12,4:16:3:34,3,0
+1	404428	.	C	T	34.02	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.500;AN=6;BaseQRankSum=-0.387;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9048;MLEAC=2;MLEAF=0.333;MQ=16.72;MQ0=25;MQRankSum=-1.532;QD=1.48;ReadPosRankSum=1.932	GT:AD:DP:GQ:PL	./.	0/0:9,1:10:9:0,9,98	0/1:7,1:8:31:31,0,31	1/1:9,6:15:3:34,3,0
+1	404664	.	G	T	173.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.107;DP=117;Dels=0.02;FS=13.776;HaplotypeScore=4.9500;MLEAC=4;MLEAF=0.500;MQ=20.37;MQ0=52;MQRankSum=0.959;QD=1.49;ReadPosRankSum=-0.779	GT:AD:DP:GQ:PL	0/1:23,2:25:43:43,0,111	0/1:34,2:36:35:35,0,265	0/1:25,4:29:46:46,0,180	0/1:20,5:25:52:82,0,52
+1	404672	.	G	A	144	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.370;DP=110;Dels=0.00;FS=10.788;HaplotypeScore=2.2250;MLEAC=4;MLEAF=0.500;MQ=21.01;MQ0=45;MQRankSum=0.959;QD=1.31;ReadPosRankSum=-0.861	GT:AD:DP:GQ:PL	0/1:23,3:26:17:17,0,113	0/1:32,2:34:34:34,0,258	0/1:22,4:26:40:40,0,176	0/1:19,5:24:51:85,0,51
+1	404734	.	A	G	41.79	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.016;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8895;MLEAC=2;MLEAF=0.250;MQ=16.18;MQ0=61;MQRankSum=-0.113;QD=0.87;ReadPosRankSum=-0.384	GT:AD:DP:GQ:PL	0/0:18,2:20:9:0,9,93	0/1:23,2:25:19:19,0,119	0/1:20,3:23:47:56,0,47	0/0:22,2:24:12:0,12,132
+1	404971	.	T	C	56.82	HARD_TO_VALIDATE	AC=3;AF=0.500;AN=6;BaseQRankSum=-0.731;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.4663;MLEAC=3;MLEAF=0.500;MQ=15.08;MQ0=28;MQRankSum=-2.166;QD=2.58;ReadPosRankSum=-0.296	GT:AD:DP:GQ:PL	./.	1/1:11,3:14:3:33,3,0	0/0:9,2:11:6:0,6,69	0/1:5,3:8:23:54,0,23
+1	404974	.	A	G	55.82	HARD_TO_VALIDATE	AC=3;AF=0.500;AN=6;BaseQRankSum=-1.133;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.4663;MLEAC=3;MLEAF=0.500;MQ=14.90;MQ0=28;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.568	GT:AD:DP:GQ:PL	./.	1/1:12,2:14:3:33,3,0	0/0:8,1:9:6:0,6,68	0/1:8,2:10:24:53,0,24
+1	449336	.	C	T	62.68	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.750;AN=4;BaseQRankSum=-1.380;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=3;MLEAF=0.750;MQ=5.00;MQ0=114;MQRankSum=0.720;QD=0.99;ReadPosRankSum=0.720	GT:AD:DP:GQ:PL	0/1:36,2:39:19:19,0,21	./.	./.	1/1:17,7:24:6:71,6,0
+1	521603	.	G	A	183.58	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=7.037;DP=172;Dels=0.00;FS=2.753;HaplotypeScore=0.7947;MLEAC=3;MLEAF=0.375;MQ=23.01;MQ0=17;MQRankSum=-4.164;QD=1.58;ReadPosRankSum=-0.180	GT:AD:DP:GQ:PL	0/1:28,9:37:83:83,0,425	0/0:50,6:56:10:0,10,980	0/1:35,6:41:21:21,0,760	0/1:29,9:38:99:113,0,533
+1	523471	.	T	C	133.54	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.2167;MLEAC=6;MLEAF=0.750;MQ=14.54;MQ0=14;QD=4.95	GT:AD:DP:GQ:PL	1/1:0,3:3:6:52,6,0	1/1:0,8:9:3:29,3,0	1/1:0,10:10:9:76,9,0	1/1:0,5:5:3:27,3,0
+1	523825	.	C	T	268.16	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=5.314;DP=198;Dels=0.00;FS=0.760;HaplotypeScore=2.1034;MLEAC=4;MLEAF=0.500;MQ=20.50;MQ0=30;MQRankSum=1.049;QD=1.35;ReadPosRankSum=0.361	GT:AD:DP:GQ:PL	0/1:41,10:51:95:95,0,594	0/1:34,6:40:11:11,0,684	0/1:43,13:57:99:166,0,751	0/1:42,7:50:28:28,0,683
+1	523948	.	C	T	84.07	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.134;DP=146;Dels=0.00;FS=18.761;HaplotypeScore=0.9295;MLEAC=2;MLEAF=0.250;MQ=12.42;MQ0=101;MQRankSum=-1.024;QD=1.20;ReadPosRankSum=0.638	GT:AD:DP:GQ:PL	0/0:34,2:36:14:0,14,333	0/0:36,4:40:6:0,6,256	0/1:26,4:30:42:42,0,44	0/1:33,7:40:75:75,0,164
+1	526057	.	T	C	747.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.094;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9548;MLEAC=4;MLEAF=0.500;MQ=46.12;MQ0=11;MQRankSum=0.965;QD=8.40;ReadPosRankSum=-1.165	GT:AD:DP:GQ:PL	0/1:13,12:25:99:204,0,122	0/1:10,11:21:99:237,0,210	0/1:9,4:13:63:63,0,169	0/1:15,14:29:99:276,0,267
+1	533197	.	A	G	33.02	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.078;DP=157;Dels=0.00;FS=20.720;HaplotypeScore=2.7253;MLEAC=3;MLEAF=0.375;MQ=35.46;MQ0=42;MQRankSum=-0.987;QD=0.27;ReadPosRankSum=-3.060	GT:AD:DP:GQ:PL	0/1:38,4:43:28:28,0,502	0/1:32,2:34:21:21,0,371	0/0:34,0:34:75:0,75,776	0/1:40,6:46:18:18,0,635
+1	533300	.	G	A	187.16	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.845;DP=253;Dels=0.00;FS=0.000;HaplotypeScore=0.9487;MLEAC=4;MLEAF=0.500;MQ=13.28;MQ0=190;MQRankSum=0.297;QD=0.74;ReadPosRankSum=-1.945	GT:AD:DP:GQ:PL	0/1:67,2:69:12:12,0,177	0/1:65,7:72:84:84,0,247	0/1:44,4:48:18:18,0,105	0/1:59,5:64:99:105,0,145
+1	533958	.	G	A	255.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=5.297;DP=487;Dels=0.00;FS=0.000;HaplotypeScore=0.5809;MLEAC=4;MLEAF=0.500;MQ=8.11;MQ0=420;MQRankSum=2.058;QD=0.53;ReadPosRankSum=-2.511	GT:AD:DP:GQ:PL	0/1:95,7:103:55:55,0,71	0/1:141,12:153:86:86,0,159	0/1:117,11:129:35:76,0,35	0/1:96,5:102:71:71,0,175
+1	534005	.	G	A	903.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=7.924;DP=488;Dels=0.00;FS=0.000;HaplotypeScore=3.7854;MLEAC=4;MLEAF=0.500;MQ=12.99;MQ0=346;MQRankSum=-0.595;QD=1.85;ReadPosRankSum=0.424	GT:AD:DP:GQ:PL	0/1:79,29:110:99:181,0,185	0/1:107,42:151:99:318,0,239	0/1:89,36:126:99:141,0,141	0/1:54,47:101:99:296,0,245
+1	534043	.	G	A	829.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.141;DP=354;Dels=0.00;FS=0.000;HaplotypeScore=7.4218;MLEAC=4;MLEAF=0.500;MQ=15.71;MQ0=216;MQRankSum=0.505;QD=2.34;ReadPosRankSum=2.786	GT:AD:DP:GQ:PL	0/1:61,27:91:99:179,0,213	0/1:52,52:105:99:314,0,210	0/1:55,26:83:99:123,0,152	0/1:52,23:75:99:246,0,220
+1	534052	.	G	A	46.06	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=3.685;DP=337;Dels=0.00;FS=0.000;HaplotypeScore=7.9977;MLEAC=2;MLEAF=0.250;MQ=16.07;MQ0=209;MQRankSum=-2.009;QD=0.27;ReadPosRankSum=1.235	GT:AD:DP:GQ:PL	0/0:80,10:91:30:0,30,468	0/1:71,25:97:63:63,0,442	0/0:62,14:76:30:0,30,280	0/1:61,11:73:17:17,0,476
+1	534082	.	A	G	328.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.936;DP=267;Dels=0.00;FS=0.000;HaplotypeScore=3.0188;MLEAC=4;MLEAF=0.500;MQ=14.15;MQ0=188;MQRankSum=0.822;QD=1.23;ReadPosRankSum=1.787	GT:AD:DP:GQ:PL	0/1:63,17:80:99:121,0,181	0/1:54,13:67:97:97,0,205	0/1:56,8:64:82:82,0,114	0/1:47,9:56:61:61,0,210
+1	534166	.	T	G	258.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.139;DP=288;Dels=0.00;FS=17.636;HaplotypeScore=0.6086;MLEAC=4;MLEAF=0.500;MQ=21.54;MQ0=126;MQRankSum=-0.635;QD=0.90;ReadPosRankSum=0.830	GT:AD:DP:GQ:PL	0/1:42,30:72:99:117,0,443	0/1:65,18:83:29:29,0,659	0/1:54,20:74:49:49,0,402	0/1:45,14:59:96:96,0,435
+1	534192	.	C	T	93.38	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.471;DP=348;Dels=0.00;FS=0.623;HaplotypeScore=9.7995;MLEAC=3;MLEAF=0.375;MQ=27.61;MQ0=108;MQRankSum=-4.523;QD=0.38;ReadPosRankSum=0.940	GT:AD:DP:GQ:PL	0/1:66,13:79:25:25,0,886	0/0:81,22:103:6:0,6,1000	0/1:70,23:94:57:57,0,931	0/1:50,21:71:44:44,0,843
+1	534198	.	C	T	98.46	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=6.327;DP=367;Dels=0.00;FS=0.947;HaplotypeScore=10.5753;MLEAC=1;MLEAF=0.125;MQ=28.30;MQ0=105;MQRankSum=-3.750;QD=1.19;ReadPosRankSum=-0.237	GT:AD:DP:GQ:PL	0/1:64,19:83:99:130,0,847	0/0:88,15:103:95:0,95,1218	0/0:88,11:99:33:0,33,1084	0/0:73,8:81:13:0,13,1032
+1	534545	.	G	A	277.68	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=4.805;DP=190;Dels=0.00;FS=1.807;HaplotypeScore=5.8881;MLEAC=3;MLEAF=0.375;MQ=42.43;MQ0=9;MQRankSum=-4.122;QD=1.90;ReadPosRankSum=-0.479	GT:AD:DP:GQ:PL	0/1:29,9:38:89:89,0,733	0/0:37,7:44:5:0,5,870	0/1:42,13:55:99:115,0,1119	0/1:43,10:53:99:106,0,1122
+1	536095	.	C	T	40.29	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=5.698;DP=151;Dels=0.00;FS=3.089;HaplotypeScore=1.5344;MLEAC=2;MLEAF=0.250;MQ=26.31;MQ0=21;MQRankSum=-4.633;QD=0.38;ReadPosRankSum=-1.008	GT:AD:DP:GQ:PL	0/1:29,9:39:4:4,0,632	0/1:29,7:36:1:1,0,664	0/1:23,8:31:65:65,0,289	0/0:39,6:45:84:0,84,773
+1	536147	.	G	T	47.33	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.297;DP=205;Dels=0.00;FS=7.497;HaplotypeScore=2.9480;MLEAC=4;MLEAF=0.500;MQ=28.47;MQ0=30;MQRankSum=-0.537;QD=0.23;ReadPosRankSum=2.406	GT:AD:DP:GQ:PL	0/1:46,5:52:20:20,0,745	0/1:38,5:43:10:10,0,744	0/1:58,5:63:15:15,0,1084	0/1:42,4:47:34:34,0,665
+1	536190	.	C	T	35.34	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=0.689;DP=192;Dels=0.00;FS=10.563;HaplotypeScore=2.3297;MLEAC=1;MLEAF=0.125;MQ=28.38;MQ0=29;MQRankSum=-2.342;QD=0.84;ReadPosRankSum=-0.925	GT:AD:DP:GQ:PL	0/0:39,5:44:32:0,32,822	0/1:36,6:42:67:67,0,665	0/0:67,3:70:99:0,144,1534	0/0:30,6:36:40:0,40,628
+1	536208	.	T	A	30.39	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=0.175;DP=154;Dels=0.00;FS=1.623;HaplotypeScore=3.6779;MLEAC=1;MLEAF=0.125;MQ=28.55;MQ0=20;MQRankSum=-0.076;QD=1.09;ReadPosRankSum=-4.027	GT:AD:DP:GQ:PL	0/0:37,1:38:81:0,81,834	0/0:32,2:34:17:0,17,693	0/0:50,3:53:36:0,36,1045	0/1:25,3:28:62:62,0,367
+1	536673	.	G	A	81.93	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.599;DP=177;Dels=0.00;FS=18.163;HaplotypeScore=0.4314;MLEAC=2;MLEAF=0.250;MQ=16.59;MQ0=86;MQRankSum=1.181;QD=0.85;ReadPosRankSum=0.065	GT:AD:DP:GQ:PL	0/0:38,5:43:27:0,27,437	0/1:41,10:51:46:46,0,558	0/0:36,2:38:24:0,24,413	0/1:39,6:45:70:70,0,365
+1	536961	.	T	C	210.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-6.699;DP=248;Dels=0.00;FS=20.442;HaplotypeScore=1.8162;MLEAC=3;MLEAF=0.375;MQ=22.01;MQ0=46;MQRankSum=-2.724;QD=1.09;ReadPosRankSum=0.383	GT:AD:DP:GQ:PL	0/0:48,6:55:31:0,31,872	0/1:44,15:59:99:115,0,761	0/1:57,11:68:30:30,0,1069	0/1:51,15:66:99:100,0,1082
+1	536986	.	G	T	470.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.954;DP=274;Dels=0.00;FS=4.761;HaplotypeScore=3.1573;MLEAC=4;MLEAF=0.500;MQ=22.46;MQ0=36;MQRankSum=-1.678;QD=1.72;ReadPosRankSum=0.014	GT:AD:DP:GQ:PL	0/1:54,12:66:44:44,0,941	0/1:48,17:65:99:214,0,875	0/1:57,12:69:87:87,0,996	0/1:57,17:74:99:158,0,1159
+1	537053	.	G	A	175.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=5.178;DP=230;Dels=0.00;FS=5.467;HaplotypeScore=0.3281;MLEAC=4;MLEAF=0.500;MQ=12.92;MQ0=156;MQRankSum=-0.347;QD=0.76;ReadPosRankSum=-0.617	GT:AD:DP:GQ:PL	0/1:51,21:72:38:38,0,257	0/1:44,13:57:28:28,0,347	0/1:34,7:41:35:35,0,242	0/1:45,15:60:99:107,0,309
+1	537191	.	C	G	481.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=4.101;DP=157;Dels=0.00;FS=90.477;HaplotypeScore=1.6179;MLEAC=4;MLEAF=0.500;MQ=24.79;MQ0=24;MQRankSum=-3.786;QD=3.07;ReadPosRankSum=-1.068	GT:AD:DP:GQ:PL	0/1:20,13:33:99:185,0,283	0/1:35,14:49:99:189,0,583	0/1:25,16:41:99:107,0,532	0/1:27,7:34:33:33,0,550
+1	537418	.	G	A	105.07	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.852;DP=155;Dels=0.00;FS=15.452;HaplotypeScore=0.1446;MLEAC=2;MLEAF=0.250;MQ=16.64;MQ0=84;MQRankSum=-1.450;QD=1.46;ReadPosRankSum=-2.156	GT:AD:DP:GQ:PL	0/0:36,6:42:14:0,14,342	0/1:33,7:40:60:60,0,339	0/1:22,10:32:79:79,0,212	0/0:34,7:41:48:0,48,469
+1	537468	.	G	T	103.03	HARD_TO_VALIDATE	AC=2;AF=0.250;AN=8;BaseQRankSum=1.935;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.1972;MLEAC=2;MLEAF=0.250;MQ=15.17;MQ0=26;MQRankSum=-1.474;QD=3.68;ReadPosRankSum=1.336	GT:AD:DP:GQ:PL	0/0:13,3:16:6:0,6,53	0/1:8,4:12:51:51,0,61	0/0:8,2:10:15:0,15,143	0/1:9,7:16:59:85,0,59
+1	537487	.	C	T	127.81	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.571;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=14.50;MQ0=15;MQRankSum=-0.175;QD=5.81;ReadPosRankSum=2.706	GT:AD:DP:GQ:PL	0/0:7,1:8:3:0,3,27	0/1:4,6:10:15:84,0,15	0/0:3,2:5:3:0,3,27	1/1:5,7:12:9:77,9,0
+1	539738	.	G	C	42.80	LowQual	AC=6;AF=1.00;AN=6;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=14.99;MQ0=1;QD=8.56	GT:AD:DP:GQ:PL	./.	1/1:0,2:2:3:22,3,0	1/1:0,1:1:3:22,3,0	1/1:0,2:2:3:22,3,0
+1	541052	.	T	C	149.28	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.777;DP=186;Dels=0.00;FS=57.816;HaplotypeScore=0.4138;MLEAC=3;MLEAF=0.375;MQ=26.49;MQ0=56;MQRankSum=-3.081;QD=1.05;ReadPosRankSum=0.373	GT:AD:DP:GQ:PL	0/1:33,6:40:12:12,0,594	0/1:39,7:46:45:45,0,688	0/0:38,6:44:18:0,18,680	0/1:44,12:56:99:126,0,870
+1	544395	.	G	A	534.96	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.882;DP=186;Dels=0.00;FS=6.547;HaplotypeScore=0.7450;MLEAC=4;MLEAF=0.500;MQ=15.35;MQ0=106;MQRankSum=-0.941;QD=2.88;ReadPosRankSum=-0.160	GT:AD:DP:GQ:PL	0/1:36,7:43:24:24,0,215	0/1:36,18:54:99:291,0,233	0/1:36,8:44:64:64,0,297	0/1:32,12:44:99:188,0,356
+1	544787	.	G	C	187.80	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.639;DP=210;Dels=0.00;FS=3.519;HaplotypeScore=1.1522;MLEAC=4;MLEAF=0.500;MQ=23.23;MQ0=74;MQRankSum=-1.598;QD=0.89;ReadPosRankSum=-0.176	GT:AD:DP:GQ:PL	0/1:45,9:54:9:9,0,618	0/1:46,11:57:67:67,0,384	0/1:35,5:40:7:7,0,189	0/1:50,9:59:99:136,0,539
+1	544814	.	C	T	73.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=4.018;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.3471;MLEAC=2;MLEAF=0.250;MQ=19.01;MQ0=95;MQRankSum=-1.414;QD=0.80;ReadPosRankSum=0.318	GT:AD:DP:GQ:PL	0/1:39,10:52:64:64,0,266	0/0:47,8:56:42:0,42,387	0/1:31,8:40:44:44,0,51	0/0:50,3:53:42:0,42,387
+1	544815	.	G	A	32.44	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.588;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.3471;MLEAC=2;MLEAF=0.250;MQ=18.92;MQ0=97;MQRankSum=-0.227;QD=0.29;ReadPosRankSum=-1.937	GT:AD:DP:GQ:PL	0/0:48,4:52:17:0,17,395	0/1:51,6:57:50:50,0,297	0/0:39,1:40:12:0,12,119	0/1:47,7:54:16:16,0,412
+1	544940	.	T	A	92.02	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.350;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.4749;MLEAC=4;MLEAF=0.500;MQ=11.36;MQ0=107;MQRankSum=1.417;QD=0.62;ReadPosRankSum=-1.350	GT:AD:DP:GQ:PL	0/1:40,4:46:23:23,0,66	0/1:33,4:39:56:56,0,79	0/1:28,5:33:28:28,0,84	0/1:26,2:29:17:17,0,50
+1	545952	.	T	A	84.73	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=-0.698;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=1;MLEAF=0.125;MQ=14.52;MQ0=55;MQRankSum=1.193;QD=3.26;ReadPosRankSum=-2.269	GT:AD:DP:GQ:PL	0/1:19,5:26:93:116,0,93	0/0:27,5:32:12:0,12,120	0/0:23,2:25:12:0,12,129	0/0:15,2:17:15:0,15,140
+1	545995	.	C	A	132.45	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.454;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.7093;MLEAC=3;MLEAF=0.375;MQ=15.69;MQ0=93;MQRankSum=-0.619;QD=1.07;ReadPosRankSum=1.400	GT:AD:DP:GQ:PL	0/1:40,10:50:94:94,0,247	0/0:53,9:62:6:0,6,252	0/1:31,4:35:17:17,0,213	0/1:34,5:39:54:54,0,322
+1	546004	.	A	G	64.94	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.807;DP=205;Dels=0.00;FS=19.104;HaplotypeScore=3.1930;MLEAC=2;MLEAF=0.250;MQ=16.07;MQ0=100;MQRankSum=-0.334;QD=0.60;ReadPosRankSum=-1.979	GT:AD:DP:GQ:PL	0/0:48,5:54:21:0,21,417	0/1:60,8:68:37:37,0,309	0/1:34,7:41:62:62,0,314	0/0:35,7:42:57:0,57,535
+1	546197	.	G	A	36.03	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=0.890;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5915;MLEAC=2;MLEAF=0.250;MQ=17.11;MQ0=72;MQRankSum=0.084;QD=0.46;ReadPosRankSum=0.197	GT:AD:DP:GQ:PL	0/1:39,5:44:18:18,0,301	0/1:28,7:35:52:52,0,207	0/0:24,6:30:33:0,33,314	0/0:33,3:36:45:0,45,443
+1	546528	.	C	T	41.35	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.066;DP=175;Dels=0.00;FS=3.524;HaplotypeScore=1.7760;MLEAC=1;MLEAF=0.125;MQ=28.51;MQ0=59;MQRankSum=-3.117;QD=0.96;ReadPosRankSum=-1.117	GT:AD:DP:GQ:PL	0/0:39,4:43:60:0,60,623	0/1:32,11:43:73:73,0,560	0/0:32,3:35:40:0,40,672	0/0:45,8:54:23:0,23,1060
+1	546697	.	A	G	6203.35	PASS	AC=8;AF=1.00;AN=8;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=2.5417;MLEAC=8;MLEAF=1.00;MQ=33.29;MQ0=8;QD=23.95	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1525,150,0	1/1:0,86:86:99:1804,177,0	1/1:0,56:56:99:1466,144,0	1/1:0,51:51:99:1434,141,0
+1	546732	.	C	T	163.33	PASS	AC=1;AF=0.125;AN=8;BaseQRankSum=-1.589;DP=334;Dels=0.00;FS=76.784;HaplotypeScore=5.5379;MLEAC=1;MLEAF=0.125;MQ=32.34;MQ0=25;MQRankSum=-4.433;QD=1.97;ReadPosRankSum=-4.155	GT:AD:DP:GQ:PL	0/1:63,20:83:99:195,0,1171	0/0:83,7:90:84:0,84,1701	0/0:73,12:85:37:0,37,1773	0/0:64,12:76:44:0,44,1697
+1	546802	.	G	C	682.03	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-5.007;DP=410;Dels=0.00;FS=137.762;HaplotypeScore=9.7613;MLEAC=4;MLEAF=0.500;MQ=26.81;MQ0=75;MQRankSum=-3.614;QD=1.66;ReadPosRankSum=1.698	GT:AD:DP:GQ:PL	0/1:67,39:106:99:412,0,874	0/1:71,33:104:79:79,0,918	0/1:65,36:102:15:15,0,915	0/1:66,32:98:99:208,0,1031
+1	546805	.	T	C	766.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.452;DP=403;Dels=0.00;FS=151.729;HaplotypeScore=10.4984;MLEAC=4;MLEAF=0.500;MQ=26.59;MQ0=72;MQRankSum=-3.344;QD=1.90;ReadPosRankSum=2.671	GT:AD:DP:GQ:PL	0/1:61,40:105:99:379,0,845	0/1:66,32:101:56:56,0,860	0/1:58,38:98:99:107,0,769	0/1:61,36:98:99:257,0,945
+1	546882	.	T	C	534.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.889;DP=460;Dels=0.00;FS=62.716;HaplotypeScore=7.4162;MLEAC=4;MLEAF=0.500;MQ=22.44;MQ0=146;MQRankSum=-5.555;QD=1.16;ReadPosRankSum=-3.560	GT:AD:DP:GQ:PL	0/1:65,45:115:99:125,0,1054	0/1:64,46:112:99:205,0,766	0/1:65,53:121:99:115,0,813	0/1:67,41:109:99:122,0,848
+1	546925	.	G	A	278.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=7.901;DP=902;Dels=0.00;FS=0.878;HaplotypeScore=7.7591;MLEAC=3;MLEAF=0.375;MQ=20.75;MQ0=308;MQRankSum=-3.067;QD=0.43;ReadPosRankSum=-4.313	GT:AD:DP:GQ:PL	0/0:205,44:249:91:0,91,2198	0/1:207,33:240:26:26,0,1748	0/1:164,35:200:66:66,0,1529	0/1:170,41:213:99:221,0,1446
+1	546952	.	T	C	2601.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-7.746;DP=939;Dels=0.00;FS=0.982;HaplotypeScore=3.9579;MLEAC=4;MLEAF=0.500;MQ=19.17;MQ0=358;MQRankSum=-2.458;QD=2.77;ReadPosRankSum=6.629	GT:AD:DP:GQ:PL	0/1:132,111:247:99:585,0,1162	0/1:129,120:250:99:728,0,1004	0/1:100,116:217:99:551,0,1063	0/1:105,119:225:99:770,0,880
+1	546965	.	G	A	486.96	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.615;DP=937;Dels=0.00;FS=1.852;HaplotypeScore=13.1604;MLEAC=4;MLEAF=0.500;MQ=17.93;MQ0=384;MQRankSum=0.434;QD=0.52;ReadPosRankSum=0.550	GT:AD:DP:GQ:PL	0/1:214,34:250:99:227,0,1089	0/1:204,45:249:23:23,0,1376	0/1:170,34:204:99:120,0,1284	0/1:199,34:234:99:149,0,1177
+1	546985	.	G	A	161.10	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=3.188;DP=902;Dels=0.00;FS=67.170;HaplotypeScore=10.4785;MLEAC=2;MLEAF=0.250;MQ=15.92;MQ0=421;MQRankSum=2.110;QD=0.37;ReadPosRankSum=2.434	GT:AD:DP:GQ:PL	0/1:223,25:250:99:162,0,1034	0/0:219,23:242:5:0,5,1304	0/1:171,18:189:32:32,0,1038	0/0:201,19:221:50:0,50,1141
+1	547110	.	C	T	172.42	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.284;DP=754;Dels=0.00;FS=0.000;HaplotypeScore=14.7675;MLEAC=3;MLEAF=0.375;MQ=9.96;MQ0=526;MQRankSum=2.988;QD=0.30;ReadPosRankSum=1.498	GT:AD:DP:GQ:PL	0/1:178,14:195:9:9,0,334	0/1:176,22:200:99:139,0,113	0/0:160,11:176:30:0,30,261	0/1:166,12:180:58:58,0,128
+1	547112	.	G	C	101.68	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-6.181;DP=742;Dels=0.01;FS=0.000;HaplotypeScore=14.4216;MLEAC=3;MLEAF=0.375;MQ=10.08;MQ0=511;MQRankSum=2.432;QD=0.18;ReadPosRankSum=1.373	GT:AD:DP:GQ:PL	0/1:179,17:196:4:4,0,366	0/1:171,22:195:99:118,0,154	0/0:150,14:165:30:0,30,279	0/1:167,13:180:12:12,0,300
+1	547133	.	G	A	36.14	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=1.816;DP=858;Dels=0.00;FS=0.000;HaplotypeScore=4.5250;MLEAC=2;MLEAF=0.250;MQ=12.42;MQ0=516;MQRankSum=-0.673;QD=0.09;ReadPosRankSum=3.848	GT:AD:DP:GQ:PL	0/0:224,19:246:74:0,74,996	0/0:207,10:218:93:0,93,916	0/1:165,23:188:55:55,0,484	0/1:181,25:206:15:15,0,632
+1	547146	.	C	T	149.14	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=3.536;DP=889;Dels=0.00;FS=3.731;HaplotypeScore=7.5274;MLEAC=3;MLEAF=0.375;MQ=13.80;MQ0=491;MQRankSum=-0.557;QD=0.23;ReadPosRankSum=-1.879	GT:AD:DP:GQ:PL	0/0:204,43:248:22:0,22,691	0/1:195,28:224:5:5,0,781	0/1:161,44:208:31:31,0,570	0/1:151,56:207:99:146,0,598
+1	547160	.	T	C	67.21	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-9.876;DP=907;Dels=0.00;FS=6.374;HaplotypeScore=8.3699;MLEAC=3;MLEAF=0.375;MQ=14.87;MQ0=452;MQRankSum=1.846;QD=0.10;ReadPosRankSum=1.080	GT:AD:DP:GQ:PL	0/1:214,35:249:78:78,0,1059	0/1:219,19:240:5:5,0,1015	0/0:187,24:212:26:0,26,1014	0/1:172,32:205:17:17,0,968
+1	547185	.	G	T	314.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.557;DP=908;Dels=0.00;FS=11.036;HaplotypeScore=3.3190;MLEAC=4;MLEAF=0.500;MQ=14.34;MQ0=472;MQRankSum=-0.287;QD=0.35;ReadPosRankSum=-1.141	GT:AD:DP:GQ:PL	0/1:214,35:249:99:99,0,843	0/1:195,40:238:77:77,0,1023	0/1:169,30:199:53:53,0,1072	0/1:184,37:221:99:118,0,895
+1	547214	.	C	T	135.42	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=5.777;DP=844;Dels=0.00;FS=8.982;HaplotypeScore=9.7856;MLEAC=3;MLEAF=0.375;MQ=12.42;MQ0=523;MQRankSum=2.303;QD=0.22;ReadPosRankSum=1.331	GT:AD:DP:GQ:PL	0/1:225,18:244:42:42,0,555	0/0:206,11:219:11:0,11,689	0/1:163,15:178:83:83,0,601	0/1:188,13:202:44:44,0,472
+1	547237	.	G	A	446.96	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.491;DP=781;Dels=0.00;FS=25.348;HaplotypeScore=1.9678;MLEAC=4;MLEAF=0.500;MQ=9.65;MQ0=581;MQRankSum=-0.424;QD=0.57;ReadPosRankSum=0.082	GT:AD:DP:GQ:PL	0/1:203,44:247:99:148,0,344	0/1:159,34:193:24:24,0,332	0/1:120,41:161:99:213,0,299	0/1:133,47:180:94:94,0,337
+1	547250	.	C	T	223.36	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.142;DP=723;Dels=0.00;FS=10.636;HaplotypeScore=0.1663;MLEAC=3;MLEAF=0.375;MQ=6.53;MQ0=590;MQRankSum=-0.896;QD=0.41;ReadPosRankSum=1.459	GT:AD:DP:GQ:PL	0/1:187,36:226:99:108,0,153	0/1:153,30:184:4:4,0,149	0/1:109,29:140:99:144,0,137	0/0:140,32:173:33:0,33,303
+1	547484	.	C	T	34.24	HARD_TO_VALIDATE;LowQD;LowQual	AC=5;AF=0.625;AN=8;BaseQRankSum=5.111;DP=808;Dels=0.00;FS=0.000;HaplotypeScore=2.3192;MLEAC=5;MLEAF=0.625;MQ=4.13;MQ0=613;MQRankSum=2.773;QD=0.06;ReadPosRankSum=-4.773	GT:AD:DP:GQ:PL	1/1:205,34:241:3:25,3,0	0/1:184,22:209:17:17,0,27	1/1:131,23:154:3:23,3,0	0/0:178,23:203:3:0,3,24
+1	547562	.	C	T	46.66	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.750;AN=4;BaseQRankSum=0.733;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.1579;MLEAC=3;MLEAF=0.750;MQ=7.01;MQ0=123;MQRankSum=1.890;QD=0.45;ReadPosRankSum=1.273	GT:AD:DP:GQ:PL	1/1:32,17:51:6:59,6,0	./.	./.	0/1:48,4:52:15:15,0,58
+1	547564	.	A	C	46.66	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.750;AN=4;BaseQRankSum=0.634;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.6050;MLEAC=3;MLEAF=0.750;MQ=7.26;MQ0=114;MQRankSum=2.124;QD=0.49;ReadPosRankSum=0.783	GT:AD:DP:GQ:PL	1/1:37,7:45:6:59,6,0	./.	./.	0/1:49,2:51:15:15,0,58
+1	547601	.	G	T	36.89	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.975;DP=382;Dels=0.00;FS=9.457;HaplotypeScore=2.8949;MLEAC=3;MLEAF=0.375;MQ=9.82;MQ0=269;MQRankSum=0.598;QD=0.12;ReadPosRankSum=0.526	GT:AD:DP:GQ:PL	0/1:82,18:100:12:12,0,255	0/1:70,28:98:13:13,0,269	0/0:64,14:78:11:0,11,261	0/1:86,19:105:45:45,0,326
+1	547782	.	C	T	98.95	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=4.701;DP=629;Dels=0.00;FS=20.213;HaplotypeScore=12.7331;MLEAC=3;MLEAF=0.375;MQ=8.87;MQ0=331;MQRankSum=3.986;QD=0.23;ReadPosRankSum=-2.929	GT:AD:DP:GQ:PL	0/0:187,4:192:14:0,14,322	0/1:162,11:174:92:92,0,272	0/1:111,6:119:33:33,0,108	0/1:138,6:144:7:7,0,320
+1	554354	.	G	A	32.71	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=3.014;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=6.98;MQ0=153;MQRankSum=0.289;QD=0.25;ReadPosRankSum=0.950	GT:AD:DP:GQ:PL	0/0:43,2:45:3:0,3,25	0/1:45,7:52:18:18,0,44	0/1:35,3:38:13:13,0,97	0/1:36,3:39:33:33,0,106
+1	554662	.	A	C	98.91	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.905;DP=198;Dels=0.00;FS=24.626;HaplotypeScore=1.1957;MLEAC=2;MLEAF=0.250;MQ=15.71;MQ0=121;MQRankSum=-3.307;QD=1.05;ReadPosRankSum=-0.103	GT:AD:DP:GQ:PL	0/0:41,7:48:27:0,27,470	0/1:41,11:52:65:65,0,214	0/1:30,12:42:68:68,0,234	0/0:46,8:54:36:0,36,524
+1	554735	.	G	A	176.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=4.404;DP=167;Dels=0.00;FS=32.803;HaplotypeScore=1.4230;MLEAC=3;MLEAF=0.375;MQ=18.39;MQ0=74;MQRankSum=-2.121;QD=1.40;ReadPosRankSum=-0.507	GT:AD:DP:GQ:PL	0/0:35,6:41:39:0,39,534	0/1:34,11:45:38:38,0,265	0/1:28,13:41:97:97,0,353	0/1:30,10:40:76:76,0,509
+1	554797	.	C	T	192.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.519;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=1.9418;MLEAC=3;MLEAF=0.375;MQ=31.24;MQ0=47;MQRankSum=-7.742;QD=1.16;ReadPosRankSum=0.393	GT:AD:DP:GQ:PL	0/1:34,16:50:30:30,0,743	0/0:40,15:55:48:0,48,1149	0/1:34,19:53:50:50,0,832	0/1:37,26:63:99:147,0,1007
+1	555165	.	T	G	557.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.047;DP=239;Dels=0.00;FS=0.000;HaplotypeScore=0.4811;MLEAC=4;MLEAF=0.500;MQ=18.07;MQ0=105;MQRankSum=-1.531;QD=2.33;ReadPosRankSum=-1.851	GT:AD:DP:GQ:PL	0/1:29,15:44:89:89,0,279	0/1:46,25:71:99:280,0,554	0/1:43,17:60:46:46,0,398	0/1:47,17:64:99:175,0,527
+1	555561	.	C	T	73.97	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=3.388;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=0.2479;MLEAC=3;MLEAF=0.375;MQ=12.45;MQ0=179;MQRankSum=0.444;QD=0.35;ReadPosRankSum=0.097	GT:AD:DP:GQ:PL	0/0:63,6:69:22:0,22,368	0/1:64,10:74:52:52,0,468	0/1:51,6:57:24:24,0,525	0/1:68,11:79:32:32,0,439
+1	557155	.	C	T	283.98	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.530;DP=233;Dels=0.00;FS=14.674;HaplotypeScore=1.3223;MLEAC=4;MLEAF=0.500;MQ=14.81;MQ0=126;MQRankSum=1.637;QD=1.22;ReadPosRankSum=1.392	GT:AD:DP:GQ:PL	0/1:55,9:64:61:61,0,508	0/1:52,10:62:20:20,0,427	0/1:35,15:50:99:210,0,292	0/1:47,10:57:25:25,0,409
+1	559135	.	T	G	211.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.557;DP=160;Dels=0.00;FS=7.335;HaplotypeScore=1.2295;MLEAC=4;MLEAF=0.500;MQ=18.28;MQ0=79;MQRankSum=0.124;QD=1.32;ReadPosRankSum=1.798	GT:AD:DP:GQ:PL	0/1:40,5:46:28:28,0,389	0/1:34,7:41:45:45,0,376	0/1:20,7:27:99:117,0,232	0/1:39,7:46:54:54,0,362
+1	559368	.	A	G	723.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.547;DP=218;Dels=0.00;FS=4.073;HaplotypeScore=3.0723;MLEAC=4;MLEAF=0.500;MQ=23.27;MQ0=40;MQRankSum=-3.604;QD=3.32;ReadPosRankSum=-0.052	GT:AD:DP:GQ:PL	0/1:36,17:53:99:276,0,569	0/1:44,9:53:94:94,0,993	0/1:42,13:55:99:216,0,690	0/1:44,12:56:99:170,0,720
+1	559631	.	A	G	126.92	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.003;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=16.76;MQ0=84;MQRankSum=-2.399;QD=1.09;ReadPosRankSum=0.693	GT:AD:DP:GQ:PL	0/1:33,7:40:99:100,0,329	0/1:32,6:38:30:30,0,346	0/1:35,3:38:31:31,0,359	0/0:49,4:53:28:0,28,680
+1	559889	.	A	G	57.06	HARD_TO_VALIDATE	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.384;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5685;MLEAC=2;MLEAF=0.250;MQ=33.52;MQ0=17;MQRankSum=-2.177;QD=1.63;ReadPosRankSum=2.214	GT:AD:DP:GQ:PL	0/1:14,5:19:26:26,0,299	0/1:11,5:16:65:65,0,144	0/0:9,0:9:18:0,18,195	0/0:10,3:13:18:0,18,173
+1	562020	.	T	C	473.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=17.996;HaplotypeScore=6.3382;MLEAC=4;MLEAF=0.500;MQ=31.46;MQ0=29;MQRankSum=1.532;QD=5.04;ReadPosRankSum=0.667	GT:AD:DP:GQ:PL	0/1:10,5:15:74:74,0,168	0/1:22,9:32:99:216,0,168	0/1:13,5:18:73:73,0,114	0/1:18,10:28:99:143,0,214
+1	562908	.	A	G	54.80	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=9.98;MQ0=10;QD=4.98	GT:AD:DP:GQ:PL	./.	1/1:0,4:4:3:22,3,0	1/1:1,2:3:3:28,3,0	1/1:0,4:4:3:28,3,0
+1	563599	.	C	T	123.80	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=3.016;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=11.93;MQ0=44;MQRankSum=1.493;QD=3.26;ReadPosRankSum=-0.935	GT:AD:DP:GQ:PL	0/1:11,5:16:16:81,0,16	0/0:17,2:19:15:0,15,130	0/1:8,5:13:20:48,0,20	1/1:8,1:9:3:29,3,0
+1	563625	.	T	C	502.53	PASS	AC=8;AF=1.00;AN=8;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=22.12;MQ0=1;QD=22.84	GT:AD:DP:GQ:PL	1/1:0,7:7:15:141,15,0	1/1:0,5:5:15:134,15,0	1/1:0,4:4:12:114,12,0	1/1:0,6:6:15:139,15,0
+1	567242	.	G	A	123.34	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=-0.458;DP=396;Dels=0.00;FS=4.405;HaplotypeScore=28.8368;MLEAC=1;MLEAF=0.125;MQ=20.28;MQ0=265;MQRankSum=-1.212;QD=3.25;ReadPosRankSum=-3.853	GT:AD:DP:GQ:PL	0/1:31,7:38:99:155,0,254	0/0:128,1:129:60:0,60,671	0/0:96,1:97:90:0,90,1019	0/0:126,6:132:27:0,27,978
+1	571623	.	T	G	1194.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.563;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.3366;MLEAC=4;MLEAF=0.500;MQ=26.44;MQ0=105;MQRankSum=-0.168;QD=5.97;ReadPosRankSum=0.332	GT:AD:DP:GQ:PL	0/1:20,29:49:99:385,0,207	0/1:30,29:59:99:189,0,459	0/1:21,22:43:99:217,0,291	0/1:21,28:49:99:436,0,227
+1	571629	.	T	C	1474.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.405;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=2.3788;MLEAC=4;MLEAF=0.500;MQ=25.58;MQ0=105;MQRankSum=1.089;QD=7.76;ReadPosRankSum=0.496	GT:AD:DP:GQ:PL	0/1:13,32:45:86:441,0,86	0/1:23,33:56:99:310,0,293	0/1:13,26:39:99:269,0,207	0/1:15,35:50:99:487,0,180
+1	571646	.	G	A	321.93	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.645;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=1.2309;MLEAC=4;MLEAF=0.500;MQ=24.54;MQ0=109;MQRankSum=-0.074;QD=2.21;ReadPosRankSum=1.264	GT:AD:DP:GQ:PL	0/1:35,11:46:99:116,0,433	0/1:38,13:51:72:72,0,466	0/0:34,7:41:2:0,2,397	0/1:33,16:49:99:165,0,452
+1	571672	.	T	C	100.27	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.663;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=4;MLEAF=0.500;MQ=18.85;MQ0=131;MQRankSum=0.825;QD=0.56;ReadPosRankSum=1.068	GT:AD:DP:GQ:PL	0/1:36,5:41:35:35,0,275	0/1:41,4:46:9:9,0,202	0/1:36,9:45:44:44,0,219	0/1:38,10:48:44:44,0,377
+1	577193	.	G	A	37.19	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=3.062;DP=149;Dels=0.00;FS=2.448;HaplotypeScore=0.9072;MLEAC=1;MLEAF=0.125;MQ=9.83;MQ0=111;MQRankSum=-1.902;QD=0.85;ReadPosRankSum=-2.222	GT:AD:DP:GQ:PL	0/0:33,3:36:5:0,5,203	0/0:31,2:33:15:0,15,126	0/0:35,1:36:18:0,18,152	0/1:39,5:44:68:68,0,123
+1	588788	.	C	T	366.04	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.189;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=1.3744;MLEAC=3;MLEAF=0.375;MQ=21.65;MQ0=49;MQRankSum=-3.022;QD=2.69;ReadPosRankSum=0.190	GT:AD:DP:GQ:PL	0/0:29,5:34:4:0,4,463	0/1:32,9:41:99:122,0,607	0/1:34,8:42:76:76,0,484	0/1:40,12:52:99:200,0,537
+1	591818	.	G	A	187.47	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=4.866;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.2487;MLEAC=4;MLEAF=0.500;MQ=20.43;MQ0=61;MQRankSum=-0.013;QD=2.31;ReadPosRankSum=-0.213	GT:AD:DP:GQ:PL	0/1:18,8:26:68:68,0,106	0/0:20,6:26:1:0,1,210	0/1:22,7:29:99:111,0,230	0/1:22,4:26:39:39,0,131
+1	594361	.	A	C	143.91	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.988;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.7444;MLEAC=4;MLEAF=0.500;MQ=11.89;MQ0=110;MQRankSum=1.107;QD=0.91;ReadPosRankSum=-0.679	GT:AD:DP:GQ:PL	0/1:32,6:38:32:32,0,288	0/1:43,4:47:4:4,0,129	0/1:26,7:33:30:30,0,120	0/1:32,8:40:96:109,0,96
+1	598588	.	T	C	212.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.549;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.0548;MLEAC=4;MLEAF=0.500;MQ=12.84;MQ0=71;MQRankSum=-1.925;QD=1.72;ReadPosRankSum=-0.272	GT:AD:DP:GQ:PL	0/1:23,5:28:63:63,0,162	0/1:25,8:33:84:84,0,159	0/1:25,5:30:66:66,0,140	0/1:27,6:33:32:32,0,230
+1	598770	.	T	C	273.96	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.943;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.2467;MLEAC=4;MLEAF=0.500;MQ=13.24;MQ0=71;MQRankSum=-0.592;QD=2.16;ReadPosRankSum=0.288	GT:AD:DP:GQ:PL	0/1:21,7:28:99:121,0,112	0/1:26,4:30:32:32,0,238	0/1:20,10:30:99:131,0,131	0/1:30,9:39:22:22,0,146
+1	601841	.	G	C	190.94	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=3.213;DP=183;Dels=0.00;FS=72.478;HaplotypeScore=0.9450;MLEAC=3;MLEAF=0.375;MQ=24.65;MQ0=89;MQRankSum=-0.770;QD=1.27;ReadPosRankSum=-1.492	GT:AD:DP:GQ:PL	0/1:45,8:53:99:112,0,506	0/0:31,2:33:24:0,24,530	0/1:43,8:51:83:83,0,459	0/1:41,5:46:30:30,0,597
+1	603023	.	C	A	91.91	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=1.216;DP=110;Dels=0.00;FS=10.183;HaplotypeScore=1.5623;MLEAC=1;MLEAF=0.125;MQ=18.69;MQ0=47;MQRankSum=-0.037;QD=2.63;ReadPosRankSum=-0.755	GT:AD:DP:GQ:PL	0/0:21,1:22:1:0,1,198	0/0:27,2:30:1:0,1,371	0/0:21,2:23:24:0,24,221	0/1:28,7:35:99:120,0,324
+1	622162	.	A	G	45.54	HARD_TO_VALIDATE;LowQD;LowQual	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.938;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=3;MLEAF=0.375;MQ=8.05;MQ0=97;MQRankSum=1.501;QD=0.51;ReadPosRankSum=-0.588	GT:AD:DP:GQ:PL	1/1:21,1:22:3:28,3,0	0/1:28,3:31:36:36,0,93	0/0:22,1:23:9:0,9,77	0/1:34,2:36:15:15,0,72
+1	622348	.	T	C	72.52	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.405;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=4;MLEAF=0.500;MQ=10.29;MQ0=87;MQRankSum=0.037;QD=0.67;ReadPosRankSum=0.479	GT:AD:DP:GQ:PL	0/1:25,4:29:14:14,0,97	0/1:26,3:29:64:65,0,64	0/1:23,2:25:8:8,0,117	0/1:22,3:26:17:17,0,71
+1	622663	.	T	C	41.94	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=1.691;DP=219;Dels=0.00;FS=82.572;HaplotypeScore=1.2356;MLEAC=2;MLEAF=0.250;MQ=17.07;MQ0=90;MQRankSum=2.720;QD=0.41;ReadPosRankSum=-0.847	GT:AD:DP:GQ:PL	0/1:42,9:51:23:23,0,578	0/1:44,7:51:53:53,0,592	0/0:55,5:60:49:0,49,827	0/0:54,3:57:61:0,61,759
+1	626579	.	G	A	52.33	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=-3.665;DP=160;Dels=0.00;FS=28.682;HaplotypeScore=1.6665;MLEAC=1;MLEAF=0.125;MQ=40.42;MQ0=22;MQRankSum=-6.318;QD=1.80;ReadPosRankSum=-1.521	GT:AD:DP:GQ:PL	0/1:20,9:29:84:84,0,551	0/0:46,11:57:99:0,106,1419	0/0:23,10:33:42:0,42,686	0/0:29,11:40:37:0,37,828
+1	628140	.	T	C	138.03	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.061;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.9930;MLEAC=4;MLEAF=0.500;MQ=15.87;MQ0=84;MQRankSum=0.247;QD=0.75;ReadPosRankSum=-0.812	GT:AD:DP:GQ:PL	0/1:36,6:42:40:40,0,412	0/1:40,8:48:87:87,0,358	0/1:42,6:48:15:15,0,440	0/1:38,8:46:28:28,0,507
+1	632630	.	A	G	102.49	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.395;DP=145;Dels=0.00;FS=40.584;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=8.62;MQ0=128;MQRankSum=-3.512;QD=1.09;ReadPosRankSum=-0.818	GT:AD:DP:GQ:PL	0/0:49,2:51:3:0,3,27	0/1:31,4:35:48:48,0,160	1/1:17,2:19:3:25,3,0	0/1:36,4:40:39:61,0,39
+1	632709	.	C	T	512.41	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=2.069;DP=109;Dels=0.00;FS=11.139;HaplotypeScore=0.7400;MLEAC=7;MLEAF=0.875;MQ=9.68;MQ0=83;MQRankSum=-0.241;QD=4.70;ReadPosRankSum=0.914	GT:AD:DP:GQ:PL	1/1:19,5:24:12:102,12,0	0/1:19,5:24:13:86,0,13	1/1:23,6:29:12:102,12,0	1/1:22,10:32:30:253,30,0
+1	633277	.	C	T	220.06	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=1.423;DP=89;Dels=0.00;FS=10.414;HaplotypeScore=0.2467;MLEAC=7;MLEAF=0.875;MQ=7.93;MQ0=78;MQRankSum=1.107;QD=2.47;ReadPosRankSum=-1.107	GT:AD:DP:GQ:PL	1/1:23,4:27:3:25,3,0	0/1:14,2:16:19:19,0,19	1/1:14,3:17:9:83,9,0	1/1:18,11:29:15:123,15,0
+1	636318	.	G	A	36.33	LowQual	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.28;MQ0=0;QD=18.16	GT:AD:DP:GQ:PL	./.	./.	1/1:0,2:2:6:61,6,0	./.
+1	645780	.	A	G	63.34	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.500;AN=6;BaseQRankSum=0.890;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.3245;MLEAC=3;MLEAF=0.500;MQ=8.91;MQ0=54;MQRankSum=0.421;QD=1.09;ReadPosRankSum=1.171	GT:AD:DP:GQ:PL	0/1:11,4:15:49:73,0,49	0/1:21,2:23:5:5,0,99	./.	0/1:19,1:20:14:14,0,36
+1	650097	.	A	G	196.42	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=4.81;MQ0=121;QD=1.50	GT:AD:DP:GQ:PL	1/1:26,4:30:3:22,3,0	1/1:27,11:38:12:89,12,0	1/1:16,8:24:9:65,9,0	1/1:28,11:39:6:45,6,0
+1	650823	.	A	G	77.06	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.667;AN=6;BaseQRankSum=0.358;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.667;MQ=6.35;MQ0=154;MQRankSum=1.231;QD=0.93;ReadPosRankSum=-0.358	GT:AD:DP:GQ:PL	./.	1/1:38,4:42:6:70,6,0	1/1:36,5:41:3:36,3,0	0/0:33,5:38:3:0,3,35
+1	651054	.	A	G	192.12	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=1.291;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.2487;MLEAC=3;MLEAF=0.375;MQ=16.31;MQ0=99;MQRankSum=-0.787;QD=2.11;ReadPosRankSum=0.409	GT:AD:DP:GQ:PL	0/1:25,4:29:51:51,0,120	0/1:28,9:37:43:117,0,43	0/1:20,5:25:58:58,0,91	0/0:30,1:31:15:0,15,159
+1	651077	.	T	C	210.77	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=1.109;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.625;MQ=12.64;MQ0=99;MQRankSum=0.965;QD=1.87;ReadPosRankSum=0.471	GT:AD:DP:GQ:PL	0/1:20,6:27:23:93,0,23	0/1:33,2:35:19:19,0,89	0/1:24,3:27:23:28,0,23	1/1:21,3:24:9:104,9,0
+1	651149	.	C	T	448.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.924;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.5834;MLEAC=4;MLEAF=0.500;MQ=23.80;MQ0=97;MQRankSum=-2.562;QD=3.12;ReadPosRankSum=1.045	GT:AD:DP:GQ:PL	0/1:23,5:29:99:115,0,118	0/1:38,6:44:99:126,0,137	0/1:30,7:37:99:140,0,138	0/1:27,7:34:99:100,0,176
+1	657788	.	G	C	1329.64	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.842;DP=117;Dels=0.00;FS=9.226;HaplotypeScore=0.9385;MLEAC=8;MLEAF=1.00;MQ=16.48;MQ0=53;MQRankSum=2.128;QD=11.36;ReadPosRankSum=-1.969	GT:AD:DP:GQ:PL	1/1:14,25:39:60:536,60,0	1/1:9,12:21:6:219,6,0	1/1:9,18:27:18:338,18,0	1/1:13,17:30:30:262,30,0
+1	660078	.	G	A	146.77	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=4.07;MQ0=173;QD=1.65	GT:AD:DP:GQ:PL	1/1:27,10:37:9:74,9,0	./.	./.	1/1:40,12:52:12:98,12,0
+1	662029	.	G	A	141.07	HARD_TO_VALIDATE;LowQD	AC=5;AF=0.833;AN=6;BaseQRankSum=0.747;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=5;MLEAF=0.833;MQ=4.83;MQ0=143;MQRankSum=0.747;QD=1.23;ReadPosRankSum=-0.747	GT:AD:DP:GQ:PL	1/1:24,6:30:9:77,9,0	0/1:38,3:41:17:42,0,17	./.	1/1:32,12:44:6:51,6,0
+1	662201	.	G	A	744.51	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.628;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=10.30;MQ0=104;MQRankSum=1.418;QD=5.43;ReadPosRankSum=-0.473	GT:AD:DP:GQ:PL	1/1:15,12:28:9:79,9,0	1/1:26,16:43:36:315,36,0	1/1:21,11:32:24:218,24,0	1/1:19,14:33:18:158,18,0
+1	662857	.	G	A	1573.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.777;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7446;MLEAC=8;MLEAF=1.00;MQ=24.47;MQ0=34;MQRankSum=1.291;QD=15.58;ReadPosRankSum=-0.094	GT:AD:DP:GQ:PL	1/1:9,18:27:42:426,42,0	1/1:8,16:24:30:335,30,0	1/1:10,14:24:27:282,27,0	1/1:7,19:26:51:556,51,0
+1	663097	.	G	C	1959.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=19.44;MQ0=29;QD=18.14	GT:AD:DP:GQ:PL	1/1:8,17:25:42:375,42,0	1/1:0,18:18:51:473,51,0	1/1:12,19:31:45:404,45,0	1/1:3,31:34:81:733,81,0
+1	663150	.	C	T	551.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.050;DP=89;Dels=0.00;FS=4.876;HaplotypeScore=2.3304;MLEAC=4;MLEAF=0.500;MQ=19.92;MQ0=19;MQRankSum=-0.715;QD=6.20;ReadPosRankSum=1.629	GT:AD:DP:GQ:PL	0/1:15,9:24:99:142,0,191	0/1:7,11:18:99:101,0,108	0/1:14,10:24:96:180,0,96	0/1:12,11:23:99:161,0,126
+1	663412	.	G	A	395.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.356;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=14.48;MQ0=56;MQRankSum=-0.894;QD=4.08;ReadPosRankSum=-0.785	GT:AD:DP:GQ:PL	0/1:9,5:15:38:67,0,38	0/1:17,10:27:78:150,0,78	0/1:22,6:28:79:111,0,79	0/1:20,6:27:99:100,0,179
+1	664271	.	C	A	332.30	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=0.971;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=7;MLEAF=0.875;MQ=8.76;MQ0=83;MQRankSum=-1.656;QD=3.16;ReadPosRankSum=1.656	GT:AD:DP:GQ:PL	0/1:18,10:28:35:83,0,35	1/1:16,16:32:18:153,18,0	1/1:12,11:23:6:51,6,0	1/1:6,14:20:9:76,9,0
+1	664834	.	T	G	64.47	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=10.62;MQ0=12;QD=4.61	GT:AD:DP:GQ:PL	1/1:0,9:9:6:43,6,0	1/1:0,5:5:6:46,6,0	./.	./.
+1	667666	.	T	A	700.66	PASS	AC=8;AF=1.00;AN=8;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.3281;MLEAC=8;MLEAF=1.00;MQ=33.49;MQ0=2;QD=25.95	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0	1/1:0,7:7:18:199,18,0	1/1:0,8:8:18:208,18,0	1/1:0,10:10:24:270,24,0
+1	669028	.	A	T	55.33	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.149;DP=173;Dels=0.00;FS=22.271;HaplotypeScore=1.1637;MLEAC=2;MLEAF=0.250;MQ=18.34;MQ0=90;MQRankSum=-3.995;QD=0.62;ReadPosRankSum=-1.052	GT:AD:DP:GQ:PL	0/0:38,1:39:27:0,27,439	0/0:42,3:45:10:0,10,398	0/1:34,6:40:57:57,0,361	0/1:40,8:48:32:32,0,422
+1	669590	.	G	T	138.56	PASS	AC=2;AF=0.250;AN=8;BaseQRankSum=-5.020;DP=152;Dels=0.00;FS=45.619;HaplotypeScore=1.4448;MLEAC=2;MLEAF=0.250;MQ=34.68;MQ0=3;MQRankSum=-1.356;QD=1.75;ReadPosRankSum=-0.966	GT:AD:DP:GQ:PL	0/0:33,3:36:4:0,4,743	0/0:34,3:37:14:0,14,927	0/1:36,6:42:59:59,0,984	0/1:29,8:37:99:112,0,710
+1	672209	.	G	A	495.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=4.650;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=0.7118;MLEAC=4;MLEAF=0.500;MQ=26.81;MQ0=41;MQRankSum=-4.356;QD=1.67;ReadPosRankSum=0.803	GT:AD:DP:GQ:PL	0/1:50,17:67:99:254,0,866	0/1:66,13:79:60:60,0,1262	0/1:61,11:72:42:42,0,1333	0/1:60,19:79:99:172,0,1058
+1	672330	.	G	C	83.52	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=2.786;DP=205;Dels=0.00;FS=3.847;HaplotypeScore=0.2892;MLEAC=1;MLEAF=0.125;MQ=12.56;MQ0=129;MQRankSum=-1.462;QD=1.90;ReadPosRankSum=1.517	GT:AD:DP:GQ:PL	0/1:34,10:44:99:115,0,212	0/0:53,2:55:12:0,12,426	0/0:41,4:45:19:0,19,338	0/0:54,7:61:29:0,29,412
+1	672663	.	T	G	736.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-8.605;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=1.7242;MLEAC=4;MLEAF=0.500;MQ=18.92;MQ0=145;MQRankSum=-3.308;QD=2.83;ReadPosRankSum=-0.253	GT:AD:DP:GQ:PL	0/1:41,20:61:99:131,0,250	0/1:51,26:77:99:246,0,535	0/1:49,19:68:99:172,0,389	0/1:39,15:54:99:220,0,437
+1	672823	.	C	G	280.93	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=5.049;DP=249;Dels=0.00;FS=35.168;HaplotypeScore=1.6091;MLEAC=3;MLEAF=0.375;MQ=35.87;MQ0=59;MQRankSum=-8.119;QD=1.61;ReadPosRankSum=-4.355	GT:AD:DP:GQ:PL	0/1:35,26:61:24:24,0,829	0/0:52,23:75:27:0,27,1321	0/1:34,17:51:80:80,0,936	0/1:36,25:62:99:211,0,999
+1	672854	.	G	C	81.36	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.067;DP=261;Dels=0.00;FS=65.513;HaplotypeScore=2.4125;MLEAC=4;MLEAF=0.500;MQ=34.91;MQ0=46;MQRankSum=-5.321;QD=0.31;ReadPosRankSum=1.623	GT:AD:DP:GQ:PL	0/1:37,13:51:30:30,0,652	0/1:56,15:71:33:33,0,1272	0/1:56,13:69:8:8,0,1443	0/1:56,14:70:42:42,0,1315
+1	673117	.	T	C	756.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.227;DP=210;Dels=0.00;FS=20.317;HaplotypeScore=2.0838;MLEAC=4;MLEAF=0.500;MQ=33.36;MQ0=10;MQRankSum=-10.124;QD=3.60;ReadPosRankSum=0.595	GT:AD:DP:GQ:PL	0/1:26,16:42:99:202,0,645	0/1:40,15:55:99:162,0,1131	0/1:44,19:63:99:164,0,1247	0/1:32,17:49:99:261,0,892
+1	673223	.	T	G	307.32	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.115;DP=171;Dels=0.00;FS=16.992;HaplotypeScore=0.7368;MLEAC=3;MLEAF=0.375;MQ=22.97;MQ0=60;MQRankSum=0.255;QD=2.46;ReadPosRankSum=-1.042	GT:AD:DP:GQ:PL	0/1:26,5:31:39:39,0,291	0/0:36,10:46:12:0,12,647	0/1:26,12:38:64:64,0,386	0/1:41,15:56:99:238,0,655
+1	673236	.	G	T	90.42	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=-0.540;DP=148;Dels=0.00;FS=28.220;HaplotypeScore=0.7051;MLEAC=1;MLEAF=0.125;MQ=22.78;MQ0=47;MQRankSum=0.033;QD=1.85;ReadPosRankSum=0.692	GT:AD:DP:GQ:PL	0/0:26,1:27:15:0,15,331	0/0:35,5:40:42:0,42,642	0/0:27,5:32:23:0,23,500	0/1:39,10:49:99:122,0,613
+1	673327	.	G	A	907.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=3.178;DP=273;Dels=0.00;FS=135.332;HaplotypeScore=1.3901;MLEAC=4;MLEAF=0.500;MQ=24.88;MQ0=96;MQRankSum=-7.473;QD=3.33;ReadPosRankSum=0.508	GT:AD:DP:GQ:PL	0/1:28,18:46:99:99,0,713	0/1:42,36:78:99:332,0,900	0/1:30,44:74:99:275,0,476	0/1:43,32:75:99:234,0,748
+1	673712	.	C	T	247.32	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.268;DP=345;Dels=0.00;FS=1.273;HaplotypeScore=1.5077;MLEAC=3;MLEAF=0.375;MQ=19.21;MQ0=152;MQRankSum=2.786;QD=0.99;ReadPosRankSum=1.470	GT:AD:DP:GQ:PL	0/1:71,7:78:10:10,0,671	0/0:88,8:96:77:0,77,1547	0/1:57,15:72:99:221,0,748	0/1:84,15:99:50:50,0,1285
+1	674421	.	A	T	1179.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.485;DP=214;Dels=0.00;FS=43.175;HaplotypeScore=5.5839;MLEAC=4;MLEAF=0.500;MQ=41.93;MQ0=28;MQRankSum=-9.195;QD=5.51;ReadPosRankSum=-0.587	GT:AD:DP:GQ:PL	0/1:23,19:42:99:355,0,609	0/1:27,32:59:99:416,0,732	0/1:36,15:51:99:124,0,991	0/1:36,26:62:99:317,0,1047
+1	674434	.	A	T	705.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.144;DP=217;Dels=0.00;FS=19.295;HaplotypeScore=2.3783;MLEAC=4;MLEAF=0.500;MQ=42.66;MQ0=22;MQRankSum=-5.472;QD=3.25;ReadPosRankSum=0.144	GT:AD:DP:GQ:PL	0/1:32,8:40:99:123,0,790	0/1:41,17:58:99:333,0,932	0/1:45,9:54:99:159,0,1133	0/1:54,11:65:99:123,0,1347
+1	674456	.	G	A	153.90	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.702;DP=238;Dels=0.00;FS=8.086;HaplotypeScore=1.4249;MLEAC=2;MLEAF=0.250;MQ=40.98;MQ0=22;MQRankSum=-4.204;QD=1.37;ReadPosRankSum=-1.786	GT:AD:DP:GQ:PL	0/1:34,10:44:99:148,0,901	0/0:62,6:68:65:0,65,1527	0/0:55,3:58:91:0,91,1526	0/1:57,11:68:40:40,0,1496
+1	675146	.	G	A	914.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.102;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.2167;MLEAC=8;MLEAF=1.00;MQ=15.31;MQ0=29;MQRankSum=1.575;QD=12.36;ReadPosRankSum=0.945	GT:AD:DP:GQ:PL	1/1:3,12:15:24:210,24,0	1/1:6,16:22:30:267,30,0	1/1:5,16:22:24:203,24,0	1/1:3,12:15:30:260,30,0
+1	679604	.	C	A	631.44	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=0.2367;MLEAC=8;MLEAF=1.00;MQ=8.39;MQ0=197;QD=2.79	GT:AD:DP:GQ:PL	1/1:15,30:46:15:148,15,0	1/1:27,33:60:24:214,24,0	1/1:22,28:50:15:127,15,0	1/1:30,40:70:18:168,18,0
+1	679692	.	C	T	68.12	HARD_TO_VALIDATE	AC=3;AF=0.750;AN=4;BaseQRankSum=0.000;DP=26;Dels=0.00;FS=6.990;HaplotypeScore=0.2892;MLEAC=3;MLEAF=0.750;MQ=11.80;MQ0=17;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.720	GT:AD:DP:GQ:PL	1/1:3,4:7:9:73,9,0	./.	0/1:4,3:7:19:23,0,19	./.
+1	684862	.	G	A	146.38	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.059;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=3;MLEAF=0.375;MQ=7.74;MQ0=151;MQRankSum=0.953;QD=1.20;ReadPosRankSum=-1.694	GT:AD:DP:GQ:PL	0/0:32,13:45:6:0,6,53	0/1:29,13:42:51:51,0,51	0/1:29,14:43:74:74,0,79	0/1:23,14:37:23:54,0,23
+1	694877	.	A	C	298.27	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=11.83;MQ0=34;QD=6.21	GT:AD:DP:GQ:PL	1/1:8,4:12:12:117,12,0	1/1:10,4:14:9:89,9,0	1/1:7,3:10:3:29,3,0	1/1:7,5:12:9:88,9,0
+1	701236	.	C	T	75.44	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=2.578;DP=208;Dels=0.00;FS=3.388;HaplotypeScore=1.2569;MLEAC=2;MLEAF=0.250;MQ=20.87;MQ0=66;MQRankSum=-1.990;QD=0.74;ReadPosRankSum=2.229	GT:AD:DP:GQ:PL	0/1:37,6:43:35:35,0,446	0/0:48,2:50:54:0,54,707	0/0:51,5:56:1:0,1,787	0/1:48,11:59:72:72,0,871
+1	701270	.	A	C	160.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.339;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.4567;MLEAC=4;MLEAF=0.500;MQ=15.96;MQ0=107;MQRankSum=-1.743;QD=0.81;ReadPosRankSum=0.005	GT:AD:DP:GQ:PL	0/1:40,5:45:29:29,0,320	0/1:41,6:47:30:30,0,292	0/1:45,12:57:47:47,0,542	0/1:41,8:49:87:87,0,440
+1	701946	.	A	G	455.77	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=22.36;MQ0=6;QD=16.88	GT:AD:DP:GQ:PL	1/1:0,6:6:15:153,15,0	1/1:0,9:9:12:121,12,0	1/1:0,2:2:6:59,6,0	1/1:0,10:10:15:148,15,0
+1	702614	.	A	G	93.62	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=2.284;DP=142;Dels=0.00;FS=45.828;HaplotypeScore=1.1606;MLEAC=2;MLEAF=0.250;MQ=23.11;MQ0=23;MQRankSum=-3.472;QD=1.30;ReadPosRankSum=0.421	GT:AD:DP:GQ:PL	0/1:31,4:36:10:10,0,609	0/0:33,3:36:55:0,55,706	0/0:30,4:34:24:0,24,589	0/1:26,10:36:99:117,0,456
+1	704367	.	T	C	434.68	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=25.56;MQ0=5;QD=16.10	GT:AD:DP:GQ:PL	1/1:0,4:4:9:78,9,0	1/1:0,11:11:18:167,18,0	1/1:0,6:6:15:136,15,0	1/1:0,6:6:9:79,9,0
+1	706368	.	A	G	3076.35	PASS	AC=8;AF=1.00;AN=8;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.0088;MLEAC=8;MLEAF=1.00;MQ=40.65;MQ0=4;QD=25.85	GT:AD:DP:GQ:PL	1/1:0,32:32:72:730,72,0	1/1:0,35:35:99:983,102,0	1/1:0,15:15:42:408,42,0	1/1:1,36:37:99:981,102,0
+1	706778	.	G	A	2259.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.2416;MLEAC=8;MLEAF=1.00;MQ=21.80;MQ0=73;QD=14.96	GT:AD:DP:GQ:PL	1/1:16,19:35:54:549,54,0	1/1:18,28:47:75:714,75,0	1/1:11,21:32:45:442,45,0	1/1:16,21:37:60:580,60,0
+1	708091	.	A	G	199.68	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.488;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=16.63;MQ0=9;MQRankSum=-0.992;QD=8.68;ReadPosRankSum=-1.736	GT:AD:DP:GQ:PL	1/1:0,5:5:3:26,3,0	1/1:1,4:5:6:59,6,0	1/1:0,6:6:9:79,9,0	1/1:0,7:7:6:60,6,0
+1	713442	.	T	C	74.25	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.131;DP=122;Dels=0.00;FS=40.021;HaplotypeScore=1.4421;MLEAC=3;MLEAF=0.375;MQ=48.23;MQ0=4;MQRankSum=-6.297;QD=0.86;ReadPosRankSum=-4.276	GT:AD:DP:GQ:PL	0/1:24,7:31:46:46,0,665	0/1:22,4:26:47:47,0,626	0/1:24,5:29:15:15,0,717	0/0:29,7:36:15:0,15,871
+1	714427	.	G	A	3373.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.5567;MLEAC=8;MLEAF=1.00;MQ=40.64;MQ0=2;MQRankSum=-1.732;QD=31.23;ReadPosRankSum=0.544	GT:AD:DP:GQ:PL	1/1:2,25:28:72:800,72,0	1/1:0,27:27:78:848,78,0	1/1:0,24:24:72:812,72,0	1/1:0,29:29:87:939,87,0
+1	715348	.	T	G	3762.35	PASS	AC=8;AF=1.00;AN=8;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7625;MLEAC=8;MLEAF=1.00;MQ=48.55;MQ0=0;QD=32.43	GT:AD:DP:GQ:PL	1/1:0,26:26:72:825,72,0	1/1:0,26:27:78:857,78,0	1/1:0,31:31:90:1014,90,0	1/1:0,32:32:96:1092,96,0
+1	715996	.	A	T	1883.57	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=0.366;DP=104;Dels=0.00;FS=9.218;HaplotypeScore=1.6757;MLEAC=7;MLEAF=0.875;MQ=28.09;MQ0=31;MQRankSum=-0.423;QD=18.11;ReadPosRankSum=0.000	GT:AD:DP:GQ:PL	0/1:2,29:31:6:463,0,6	1/1:1,19:20:9:368,9,0	1/1:0,23:23:45:472,45,0	1/1:0,30:30:57:609,57,0
+1	718386	.	A	G	2127.35	PASS	AC=8;AF=1.00;AN=8;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=33.56;MQ0=9;QD=21.71	GT:AD:DP:GQ:PL	1/1:0,18:18:39:370,39,0	1/1:0,42:42:99:993,108,0	1/1:0,17:17:33:302,33,0	1/1:0,21:21:54:488,54,0
+1	718555	.	T	C	2941.35	PASS	AC=8;AF=1.00;AN=8;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7480;MLEAC=8;MLEAF=1.00;MQ=45.57;MQ0=1;QD=28.28	GT:AD:DP:GQ:PL	1/1:1,31:32:87:935,87,0	1/1:0,30:30:87:873,87,0	1/1:0,21:21:51:534,51,0	1/1:0,21:21:60:625,60,0
+1	720240	.	T	C	2785.35	PASS	AC=8;AF=1.00;AN=8;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=8;MLEAF=1.00;MQ=35.18;MQ0=7;QD=27.58	GT:AD:DP:GQ:PL	1/1:0,21:21:48:521,48,0	1/1:0,31:31:81:901,81,0	1/1:0,22:22:51:578,51,0	1/1:0,27:27:72:811,72,0
+1	720797	.	G	A	2208.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.4984;MLEAC=8;MLEAF=1.00;MQ=30.85;MQ0=14;QD=23.49	GT:AD:DP:GQ:PL	1/1:0,18:19:36:412,36,0	1/1:0,30:30:69:774,69,0	1/1:0,20:20:42:452,42,0	1/1:0,25:25:54:596,54,0
+1	723891	.	G	C	3628.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.2234;MLEAC=8;MLEAF=1.00;MQ=48.41;MQ0=1;MQRankSum=1.391;QD=29.50;ReadPosRankSum=-0.426	GT:AD:DP:GQ:PL	1/1:2,28:30:72:750,72,0	1/1:0,35:35:99:1044,99,0	1/1:0,28:28:84:917,84,0	1/1:0,30:30:87:943,87,0
+1	724189	.	G	A	77.14	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.284;DP=803;Dels=0.00;FS=7.187;HaplotypeScore=40.5266;MLEAC=2;MLEAF=0.250;MQ=28.83;MQ0=351;MQRankSum=2.117;QD=0.21;ReadPosRankSum=-3.949	GT:AD:DP:GQ:PL	0/1:208,7:219:15:15,0,1499	0/0:236,3:242:80:0,80,1486	0/1:135,10:148:96:96,0,1218	0/0:188,3:193:99:0,199,2457
+1	724452	.	C	G	237.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.016;DP=298;Dels=0.00;FS=10.852;HaplotypeScore=6.2074;MLEAC=3;MLEAF=0.375;MQ=50.84;MQ0=30;MQRankSum=-6.950;QD=1.02;ReadPosRankSum=-4.428	GT:AD:DP:GQ:PL	0/0:57,8:65:28:0,28,1474	0/1:77,13:90:76:76,0,1910	0/1:60,10:70:48:48,0,1485	0/1:62,11:73:99:148,0,1591
+1	724468	.	G	A	769.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.126;DP=414;Dels=0.00;FS=66.149;HaplotypeScore=15.6992;MLEAC=4;MLEAF=0.500;MQ=43.84;MQ0=74;MQRankSum=-8.796;QD=1.86;ReadPosRankSum=0.671	GT:AD:DP:GQ:PL	0/1:78,24:102:99:167,0,1443	0/1:85,25:110:99:160,0,1794	0/1:74,21:96:99:122,0,1582	0/1:76,30:106:99:353,0,1435
+1	724469	.	A	T	117.92	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.732;DP=427;Dels=0.00;FS=18.603;HaplotypeScore=15.6865;MLEAC=3;MLEAF=0.375;MQ=43.13;MQ0=75;MQRankSum=-3.920;QD=0.36;ReadPosRankSum=4.049	GT:AD:DP:GQ:PL	0/0:95,7:103:99:0,114,1875	0/1:102,13:115:55:55,0,1910	0/1:88,10:98:23:23,0,1679	0/1:100,10:110:74:74,0,1810
+1	724474	.	A	C	60.35	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-4.064;DP=473;Dels=0.00;FS=19.048;HaplotypeScore=21.6100;MLEAC=3;MLEAF=0.375;MQ=41.40;MQ0=84;MQRankSum=-2.972;QD=0.17;ReadPosRankSum=5.534	GT:AD:DP:GQ:PL	0/0:106,6:113:99:0,136,2060	0/1:113,13:126:22:22,0,1944	0/1:102,10:112:10:10,0,1823	0/1:111,10:122:62:62,0,1867
+1	724475	.	T	A	137.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.759;DP=477;Dels=0.00;FS=21.882;HaplotypeScore=22.1092;MLEAC=3;MLEAF=0.375;MQ=41.09;MQ0=85;MQRankSum=-2.874;QD=0.38;ReadPosRankSum=5.748	GT:AD:DP:GQ:PL	0/0:101,11:112:72:0,72,1910	0/1:116,14:130:52:52,0,1993	0/1:98,14:112:49:49,0,1761	0/1:110,13:123:71:71,0,1896
+1	724500	.	C	T	73.12	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=6.973;DP=384;Dels=0.00;FS=0.000;HaplotypeScore=33.6643;MLEAC=2;MLEAF=0.250;MQ=44.74;MQ0=54;MQRankSum=-9.354;QD=0.39;ReadPosRankSum=-0.020	GT:AD:DP:GQ:PL	0/1:67,13:87:25:25,0,1333	0/0:76,20:103:5:0,5,1645	0/0:67,22:92:77:0,77,1551	0/1:76,24:102:81:81,0,1386
+1	724506	.	G	T	160.97	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=2.648;DP=474;Dels=0.01;FS=15.756;HaplotypeScore=39.5086;MLEAC=3;MLEAF=0.375;MQ=40.59;MQ0=91;MQRankSum=-4.162;QD=0.43;ReadPosRankSum=4.224	GT:AD:DP:GQ:PL	0/0:86,8:97:76:0,76,1783	0/1:103,11:117:66:66,0,1752	0/1:110,11:123:18:18,0,1817	0/1:114,16:133:99:111,0,1762
+1	724621	.	C	G	48.98	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.140;DP=261;Dels=0.05;FS=62.652;HaplotypeScore=35.7074;MLEAC=2;MLEAF=0.250;MQ=33.85;MQ0=49;MQRankSum=-7.729;QD=0.37;ReadPosRankSum=1.650	GT:AD:DP:GQ:PL	0/0:51,9:63:96:0,96,1320	0/1:40,16:61:63:63,0,853	0/1:38,20:64:20:20,0,725	0/0:47,8:60:33:0,33,1064
+1	724622	.	A	G	99	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.715;DP=267;Dels=0.04;FS=38.621;HaplotypeScore=36.4808;MLEAC=2;MLEAF=0.250;MQ=33.79;MQ0=50;MQRankSum=-7.330;QD=0.73;ReadPosRankSum=1.954	GT:AD:DP:GQ:PL	0/0:55,10:65:59:0,59,1297	0/1:48,14:63:19:19,0,938	0/1:40,24:65:99:114,0,748	0/0:50,11:61:71:0,71,1198
+1	724637	.	G	A	66.83	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.060;DP=617;Dels=0.00;FS=81.596;HaplotypeScore=52.2720;MLEAC=3;MLEAF=0.375;MQ=26.50;MQ0=153;MQRankSum=-2.242;QD=0.14;ReadPosRankSum=0.775	GT:AD:DP:GQ:PL	0/0:104,11:124:99:0,141,1827	0/1:158,16:184:12:12,0,2042	0/1:113,18:135:80:80,0,1319	0/1:154,15:174:8:8,0,1916
+1	724642	.	G	A	210.94	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=8.472;DP=642;Dels=0.00;FS=92.306;HaplotypeScore=70.2990;MLEAC=3;MLEAF=0.375;MQ=25.48;MQ0=170;MQRankSum=-0.623;QD=0.45;ReadPosRankSum=4.356	GT:AD:DP:GQ:PL	0/1:110,14:125:21:21,0,1470	0/1:168,30:199:99:173,0,1931	0/1:125,15:142:51:51,0,1295	0/0:166,10:176:68:0,68,1914
+1	724652	.	C	T	823.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.732;DP=667;Dels=0.00;FS=39.500;HaplotypeScore=88.9382;MLEAC=4;MLEAF=0.500;MQ=25.12;MQ0=176;MQRankSum=-4.328;QD=1.24;ReadPosRankSum=-8.407	GT:AD:DP:GQ:PL	0/1:85,30:125:99:291,0,1113	0/1:136,35:201:99:244,0,1836	0/1:110,29:155:99:133,0,1425	0/1:127,49:185:99:188,0,1727
+1	724655	.	T	A	210.95	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-4.353;DP=677;Dels=0.00;FS=58.563;HaplotypeScore=76.7636;MLEAC=2;MLEAF=0.250;MQ=24.86;MQ0=181;MQRankSum=1.204;QD=0.64;ReadPosRankSum=3.490	GT:AD:DP:GQ:PL	0/1:107,11:126:50:50,0,1303	0/1:163,22:203:99:195,0,1869	0/0:146,9:162:20:0,20,1657	0/0:164,11:186:99:0,107,2175
+1	724657	.	G	A	183.33	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.640;DP=676;Dels=0.00;FS=22.131;HaplotypeScore=73.1780;MLEAC=2;MLEAF=0.250;MQ=24.72;MQ0=185;MQRankSum=-2.864;QD=0.60;ReadPosRankSum=-6.350	GT:AD:DP:GQ:PL	0/1:104,20:124:99:202,0,1088	0/0:183,22:205:71:0,71,2326	0/0:147,16:163:2:0,2,1650	0/1:154,30:184:13:13,0,2018
+1	724673	.	A	T	377.95	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.510;DP=657;Dels=0.00;FS=75.894;HaplotypeScore=49.0740;MLEAC=4;MLEAF=0.500;MQ=26.27;MQ0=185;MQRankSum=-1.122;QD=0.58;ReadPosRankSum=2.502	GT:AD:DP:GQ:PL	0/1:108,13:124:27:27,0,1301	0/1:170,30:203:99:145,0,2202	0/1:127,24:153:99:210,0,1413	0/1:147,25:177:28:28,0,1903
+1	724696	.	A	T	74.93	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=3.783;DP=329;Dels=0.00;FS=47.944;HaplotypeScore=34.0239;MLEAC=2;MLEAF=0.250;MQ=33.86;MQ0=67;MQRankSum=-4.329;QD=0.46;ReadPosRankSum=0.673	GT:AD:DP:GQ:PL	0/0:60,4:70:39:0,39,1186	0/0:60,11:94:31:0,31,1308	0/1:55,9:76:25:25,0,1006	0/1:64,13:88:84:84,0,1273
+1	724830	.	A	T	422.95	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.433;DP=136;Dels=0.00;FS=103.975;HaplotypeScore=2.6302;MLEAC=4;MLEAF=0.500;MQ=46.13;MQ0=10;MQRankSum=-8.339;QD=3.11;ReadPosRankSum=-5.799	GT:AD:DP:GQ:PL	0/1:27,12:39:29:29,0,814	0/1:21,16:37:99:252,0,569	0/1:17,10:28:68:68,0,457	0/1:20,12:32:99:106,0,558
+1	724836	.	T	G	434.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.960;DP=161;Dels=0.00;FS=104.283;HaplotypeScore=4.2218;MLEAC=4;MLEAF=0.500;MQ=40.73;MQ0=28;MQRankSum=-6.761;QD=2.70;ReadPosRankSum=-1.426	GT:AD:DP:GQ:PL	0/1:28,12:40:45:45,0,681	0/1:27,16:43:99:250,0,543	0/1:24,13:37:68:68,0,457	0/1:29,12:41:99:104,0,542
+1	724837	.	G	A	387.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.585;DP=174;Dels=0.00;FS=97.023;HaplotypeScore=4.0051;MLEAC=4;MLEAF=0.500;MQ=39.06;MQ0=34;MQRankSum=-5.718;QD=2.23;ReadPosRankSum=-0.248	GT:AD:DP:GQ:PL	0/1:31,12:43:30:30,0,711	0/1:27,16:43:99:223,0,541	0/1:31,10:41:66:66,0,433	0/1:35,12:47:99:101,0,572
+1	724869	.	C	A	800.96	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.268;DP=98;Dels=0.00;FS=54.326;HaplotypeScore=9.9308;MLEAC=4;MLEAF=0.500;MQ=36.18;MQ0=22;MQRankSum=5.139;QD=8.17;ReadPosRankSum=0.132	GT:AD:DP:GQ:PL	0/1:8,12:20:23:359,0,23	0/1:22,7:29:99:185,0,173	0/1:13,8:21:99:169,0,125	0/1:22,6:28:99:120,0,301
+1	724871	.	C	G	727.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.290;DP=97;Dels=0.00;FS=61.154;HaplotypeScore=9.6850;MLEAC=4;MLEAF=0.500;MQ=35.37;MQ0=22;MQRankSum=4.673;QD=7.50;ReadPosRankSum=-0.582	GT:AD:DP:GQ:PL	0/1:9,10:19:62:301,0,62	0/1:23,7:30:99:192,0,208	0/1:14,6:20:99:142,0,127	0/1:20,6:28:99:125,0,311
+1	724873	.	A	C	66.46	HARD_TO_VALIDATE	AC=1;AF=0.125;AN=8;BaseQRankSum=-3.047;DP=100;Dels=0.00;FS=20.885;HaplotypeScore=5.2746;MLEAC=1;MLEAF=0.125;MQ=35.79;MQ0=22;MQRankSum=-0.197;QD=2.22;ReadPosRankSum=-0.553	GT:AD:DP:GQ:PL	0/0:20,0:20:42:0,42,482	0/0:29,1:30:13:0,13,420	0/0:20,0:20:30:0,30,327	0/1:25,5:30:98:98,0,384
+1	724928	.	A	T	102.58	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.226;DP=194;Dels=0.00;FS=46.560;HaplotypeScore=14.3356;MLEAC=4;MLEAF=0.500;MQ=30.42;MQ0=41;MQRankSum=-1.890;QD=0.53;ReadPosRankSum=2.871	GT:AD:DP:GQ:PL	0/1:39,6:46:50:50,0,623	0/1:46,6:53:12:12,0,555	0/1:25,5:32:2:2,0,447	0/1:49,12:63:69:69,0,855
+1	724931	.	T	G	112.12	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.367;DP=217;Dels=0.00;FS=49.098;HaplotypeScore=11.9297;MLEAC=4;MLEAF=0.500;MQ=30.52;MQ0=45;MQRankSum=-3.872;QD=0.52;ReadPosRankSum=1.807	GT:AD:DP:GQ:PL	0/1:38,8:52:44:44,0,716	0/1:38,16:61:12:12,0,610	0/1:23,9:36:27:27,0,441	0/1:51,15:68:61:61,0,927
+1	724948	.	T	A	412.45	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=4.383;DP=481;Dels=0.00;FS=26.325;HaplotypeScore=120.9025;MLEAC=3;MLEAF=0.375;MQ=23.45;MQ0=174;MQRankSum=-1.371;QD=0.86;ReadPosRankSum=-2.968	GT:AD:DP:GQ:PL	0/1:71,24:105:38:38,0,589	0/1:85,39:130:99:218,0,750	0/1:72,28:106:99:108,0,681	0/1:96,38:140:99:116,0,841
+1	724972	.	A	G	54.91	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.543;DP=639;Dels=0.00;FS=6.136;HaplotypeScore=99.7438;MLEAC=2;MLEAF=0.250;MQ=25.50;MQ0=217;MQRankSum=-2.643;QD=0.18;ReadPosRankSum=-0.419	GT:AD:DP:GQ:PL	0/0:118,11:137:99:0,138,1467	0/0:167,17:196:69:0,69,1628	0/1:131,14:155:32:32,0,1270	0/1:122,15:151:57:57,0,896
+1	724979	.	C	A	100.45	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=0.451;DP=567;Dels=0.01;FS=0.000;HaplotypeScore=101.1796;MLEAC=1;MLEAF=0.125;MQ=28.01;MQ0=176;MQRankSum=-5.151;QD=0.76;ReadPosRankSum=7.155	GT:AD:DP:GQ:PL	0/0:99,14:122:40:0,40,1287	0/0:126,23:165:22:0,22,1647	0/0:104,23:141:3:0,3,1456	0/1:84,34:131:99:131,0,793
+1	724981	.	A	C	118.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-3.046;DP=574;Dels=0.01;FS=1.318;HaplotypeScore=97.5375;MLEAC=1;MLEAF=0.125;MQ=28.18;MQ0=175;MQRankSum=-4.106;QD=0.97;ReadPosRankSum=4.643	GT:AD:DP:GQ:PL	0/1:79,25:122:99:150,0,1030	0/0:121,26:165:99:0,102,1891	0/0:109,21:144:35:0,35,1509	0/0:95,20:135:78:0,78,1084
+1	725022	.	T	G	415	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.523;DP=282;Dels=0.02;FS=10.837;HaplotypeScore=53.7479;MLEAC=4;MLEAF=0.500;MQ=42.66;MQ0=35;MQRankSum=-7.535;QD=1.47;ReadPosRankSum=0.455	GT:AD:DP:GQ:PL	0/1:36,20:60:99:163,0,696	0/1:58,18:80:99:170,0,1253	0/1:59,20:84:17:17,0,1482	0/1:35,16:52:97:97,0,761
+1	725026	.	T	C	264.93	HARD_TO_VALIDATE	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.816;DP=271;Dels=0.02;FS=0.807;HaplotypeScore=67.7715;MLEAC=2;MLEAF=0.250;MQ=43.70;MQ0=28;MQRankSum=-7.950;QD=1.91;ReadPosRankSum=-1.799	GT:AD:DP:GQ:PL	0/1:43,11:56:99:126,0,827	0/0:62,15:79:59:0,59,1544	0/1:56,23:80:99:173,0,1480	0/0:42,9:51:22:0,22,964
+1	725040	.	C	T	396.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=7.294;DP=395;Dels=0.03;FS=19.945;HaplotypeScore=79.9945;MLEAC=3;MLEAF=0.375;MQ=39.08;MQ0=51;MQRankSum=-7.297;QD=1.45;ReadPosRankSum=-3.329	GT:AD:DP:GQ:PL	0/1:52,16:73:99:112,0,1053	0/0:91,26:120:31:0,31,1819	0/1:82,17:100:99:106,0,1819	0/1:59,30:92:99:213,0,1021
+1	725046	.	T	G	223.75	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.562;DP=543;Dels=0.00;FS=1.019;HaplotypeScore=80.3520;MLEAC=3;MLEAF=0.375;MQ=34.71;MQ0=102;MQRankSum=-4.929;QD=0.54;ReadPosRankSum=-2.126	GT:AD:DP:GQ:PL	0/1:85,22:109:19:19,0,1411	0/1:136,27:167:76:76,0,2384	0/0:109,21:131:9:0,9,2272	0/1:100,32:135:99:162,0,1621
+1	725071	.	G	T	99.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=1.554;DP=993;Dels=0.00;FS=8.241;HaplotypeScore=92.3319;MLEAC=1;MLEAF=0.125;MQ=23.64;MQ0=304;MQRankSum=0.068;QD=0.40;ReadPosRankSum=-1.452	GT:AD:DP:GQ:PL	0/0:225,15:249:99:0,206,2673	0/0:224,11:244:99:0,145,2261	0/1:222,22:250:99:131,0,2096	0/0:220,21:250:75:0,75,2546
+1	725086	.	G	C	53.57	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-5.738;DP=997;Dels=0.00;FS=2.669;HaplotypeScore=133.1976;MLEAC=1;MLEAF=0.125;MQ=21.70;MQ0=329;MQRankSum=0.562;QD=0.21;ReadPosRankSum=1.420	GT:AD:DP:GQ:PL	0/0:236,5:248:99:0,211,2673	0/0:227,13:249:99:0,144,2182	0/1:223,21:250:85:85,0,1852	0/0:223,19:250:10:0,10,2019
+1	725114	.	A	T	98.97	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.533;DP=994;Dels=0.00;FS=30.358;HaplotypeScore=115.3605;MLEAC=2;MLEAF=0.250;MQ=21.35;MQ0=325;MQRankSum=0.180;QD=0.20;ReadPosRankSum=-4.402	GT:AD:DP:GQ:PL	0/0:237,10:248:28:0,28,2154	0/1:226,20:247:8:8,0,2090	0/1:228,18:249:99:124,0,2179	0/0:228,18:250:43:0,43,2267
+1	725126	.	G	T	33.34	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=0.089;DP=817;Dels=0.01;FS=79.446;HaplotypeScore=160.8698;MLEAC=1;MLEAF=0.125;MQ=22.71;MQ0=238;MQRankSum=1.974;QD=0.17;ReadPosRankSum=0.098	GT:AD:DP:GQ:PL	0/0:176,5:196:37:0,37,1888	0/0:194,7:218:33:0,33,1735	0/1:180,10:200:65:65,0,2064	0/0:172,8:197:48:0,48,1861
+1	725127	.	A	G	2048.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.362;DP=767;Dels=0.02;FS=133.910;HaplotypeScore=185.2120;MLEAC=4;MLEAF=0.500;MQ=23.35;MQ0=212;MQRankSum=-1.894;QD=2.67;ReadPosRankSum=-0.895	GT:AD:DP:GQ:PL	0/1:112,58:185:99:668,0,1050	0/1:122,66:197:99:664,0,1179	0/1:127,48:185:99:498,0,1514	0/1:116,47:181:99:251,0,1564
+1	725130	.	T	A	38.35	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.996;DP=732;Dels=0.05;FS=20.348;HaplotypeScore=178.7335;MLEAC=1;MLEAF=0.125;MQ=23.69;MQ0=193;MQRankSum=-3.604;QD=0.22;ReadPosRankSum=1.169	GT:AD:DP:GQ:PL	0/0:141,28:172:21:0,21,1859	0/0:159,22:183:91:0,91,2056	0/1:152,20:174:70:70,0,2049	0/0:148,20:169:80:0,80,1916
+1	725132	.	C	G	1887.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.150;DP=735;Dels=0.02;FS=24.806;HaplotypeScore=184.7278;MLEAC=4;MLEAF=0.500;MQ=23.74;MQ0=195;MQRankSum=-6.161;QD=2.57;ReadPosRankSum=3.590	GT:AD:DP:GQ:PL	0/1:84,73:176:99:562,0,1062	0/1:89,85:196:99:601,0,1128	0/1:91,69:172:99:539,0,1411	0/1:102,60:175:99:218,0,1365
+1	725145	.	T	A	208.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.418;DP=878;Dels=0.00;FS=12.992;HaplotypeScore=113.2956;MLEAC=3;MLEAF=0.375;MQ=23.10;MQ0=255;MQRankSum=-0.871;QD=0.32;ReadPosRankSum=4.834	GT:AD:DP:GQ:PL	0/1:195,20:216:26:26,0,2149	0/1:199,25:224:99:128,0,2179	0/1:183,21:205:89:89,0,2231	0/0:212,17:230:53:0,53,2247
+1	725150	.	T	G	276.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-4.260;DP=721;Dels=0.00;FS=2.199;HaplotypeScore=103.5960;MLEAC=3;MLEAF=0.375;MQ=24.14;MQ0=209;MQRankSum=-2.620;QD=0.52;ReadPosRankSum=3.842	GT:AD:DP:GQ:PL	0/1:142,24:177:34:34,0,1809	0/1:162,27:196:85:85,0,1979	0/1:126,29:159:99:192,0,1686	0/0:160,19:188:40:0,40,1906
+1	725155	.	T	A	96.19	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.162;DP=708;Dels=0.00;FS=2.246;HaplotypeScore=104.5786;MLEAC=2;MLEAF=0.250;MQ=24.30;MQ0=204;MQRankSum=-4.596;QD=0.27;ReadPosRankSum=3.607	GT:AD:DP:GQ:PL	0/0:145,17:170:12:0,12,1823	0/1:141,26:193:71:71,0,1859	0/1:124,21:157:59:59,0,1735	0/0:141,21:185:23:0,23,1712
+1	725156	.	A	G	2380.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.853;DP=704;Dels=0.00;FS=23.585;HaplotypeScore=92.3189;MLEAC=4;MLEAF=0.500;MQ=24.40;MQ0=204;MQRankSum=-5.666;QD=3.38;ReadPosRankSum=6.019	GT:AD:DP:GQ:PL	0/1:86,78:167:99:655,0,1154	0/1:111,79:193:99:748,0,1316	0/1:89,64:158:99:635,0,1229	0/1:120,65:186:99:375,0,1438
+1	725175	.	A	T	146.39	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.606;DP=370;Dels=0.00;FS=21.549;HaplotypeScore=57.1141;MLEAC=4;MLEAF=0.500;MQ=31.87;MQ0=75;MQRankSum=-6.327;QD=0.40;ReadPosRankSum=-3.756	GT:AD:DP:GQ:PL	0/1:58,18:81:57:57,0,1197	0/1:72,17:99:32:32,0,1330	0/1:75,18:99:86:86,0,1389	0/1:72,15:90:2:2,0,1291
+1	725176	.	G	T	344.97	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.708;DP=327;Dels=0.00;FS=34.423;HaplotypeScore=60.7658;MLEAC=4;MLEAF=0.500;MQ=33.74;MQ0=53;MQRankSum=-7.467;QD=1.05;ReadPosRankSum=-0.717	GT:AD:DP:GQ:PL	0/1:52,8:72:20:20,0,1256	0/1:54,21:89:79:79,0,1185	0/1:52,17:87:99:151,0,1168	0/1:54,16:79:99:127,0,1173
+1	725188	.	G	A	451.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.794;DP=295;Dels=0.02;FS=37.232;HaplotypeScore=39.0034;MLEAC=4;MLEAF=0.500;MQ=36.01;MQ0=54;MQRankSum=-10.782;QD=1.53;ReadPosRankSum=-2.369	GT:AD:DP:GQ:PL	0/1:47,16:63:99:117,0,1034	0/1:52,26:78:52:52,0,1140	0/1:43,30:73:99:219,0,1164	0/1:45,28:75:96:96,0,976
+1	725199	.	G	A	40.79	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.434;DP=289;Dels=0.00;FS=29.543;HaplotypeScore=24.3136;MLEAC=3;MLEAF=0.375;MQ=37.82;MQ0=55;MQRankSum=-8.717;QD=0.19;ReadPosRankSum=-0.155	GT:AD:DP:GQ:PL	0/1:56,15:71:28:28,0,1252	0/1:59,18:77:17:17,0,1227	0/0:54,17:72:9:0,9,1377	0/1:51,18:69:29:29,0,975
+1	725316	.	G	A	324.03	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.964;DP=798;Dels=0.00;FS=4.707;HaplotypeScore=45.8820;MLEAC=3;MLEAF=0.375;MQ=31.14;MQ0=215;MQRankSum=-0.968;QD=0.53;ReadPosRankSum=-2.387	GT:AD:DP:GQ:PL	0/1:165,23:193:99:154,0,1643	0/1:193,23:219:99:200,0,2225	0/0:160,18:184:48:0,48,1818	0/1:178,18:202:2:2,0,2346
+1	725356	.	G	T	534.47	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=2.998;DP=407;Dels=0.00;FS=8.883;HaplotypeScore=40.0059;MLEAC=4;MLEAF=0.500;MQ=40.72;MQ0=81;MQRankSum=-5.999;QD=1.74;ReadPosRankSum=10.397	GT:AD:DP:GQ:PL	0/1:67,19:90:99:231,0,1015	0/1:90,21:111:99:253,0,1731	0/0:83,15:99:1:0,1,1381	0/1:88,16:107:81:81,0,1671
+1	725536	.	G	A	488.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.958;DP=985;Dels=0.00;FS=60.171;HaplotypeScore=102.5397;MLEAC=4;MLEAF=0.500;MQ=24.77;MQ0=373;MQRankSum=-0.258;QD=0.50;ReadPosRankSum=-5.301	GT:AD:DP:GQ:PL	0/1:213,19:245:67:67,0,1762	0/1:211,19:241:95:95,0,1572	0/1:216,27:249:99:100,0,1889	0/1:211,30:250:99:259,0,1951
+1	725550	.	T	G	80.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=5.476;DP=999;Dels=0.00;FS=10.859;HaplotypeScore=126.8457;MLEAC=2;MLEAF=0.250;MQ=26.58;MQ0=278;MQRankSum=-0.186;QD=0.16;ReadPosRankSum=-5.324	GT:AD:DP:GQ:PL	0/1:223,23:250:39:39,0,2405	0/1:222,23:249:76:76,0,2034	0/0:231,13:250:71:0,71,2343	0/0:241,7:249:99:0,260,3555
+1	725556	.	A	G	4076.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.740;DP=910;Dels=0.00;FS=57.760;HaplotypeScore=201.0686;MLEAC=4;MLEAF=0.500;MQ=27.92;MQ0=221;MQRankSum=-5.968;QD=4.48;ReadPosRankSum=-10.523	GT:AD:DP:GQ:PL	0/1:124,71:218:99:704,0,1601	0/1:97,108:231:99:1157,0,876	0/1:108,95:221:99:789,0,1223	0/1:117,108:237:99:1459,0,1462
+1	725559	.	C	T	146.17	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.816;DP=914;Dels=0.01;FS=19.450;HaplotypeScore=263.6645;MLEAC=3;MLEAF=0.375;MQ=28.70;MQ0=164;MQRankSum=1.355;QD=0.21;ReadPosRankSum=-3.723	GT:AD:DP:GQ:PL	0/1:186,17:215:29:29,0,2499	0/1:222,15:245:12:12,0,2673	0/0:187,12:206:43:0,43,2252	0/1:206,22:241:99:139,0,3072
+1	725566	.	G	A	808.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.460;DP=942;Dels=0.02;FS=20.365;HaplotypeScore=261.1380;MLEAC=4;MLEAF=0.500;MQ=28.81;MQ0=155;MQRankSum=0.474;QD=0.86;ReadPosRankSum=-2.013	GT:AD:DP:GQ:PL	0/1:189,23:214:99:162,0,2634	0/1:218,27:245:99:246,0,2510	0/1:189,24:214:99:106,0,2431	0/1:212,32:245:99:327,0,3412
+1	725569	.	T	A	2078.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.486;DP=954;Dels=0.02;FS=25.177;HaplotypeScore=215.5667;MLEAC=4;MLEAF=0.500;MQ=28.61;MQ0=154;MQRankSum=-7.272;QD=2.18;ReadPosRankSum=1.024	GT:AD:DP:GQ:PL	0/1:139,68:226:99:424,0,2256	0/1:136,92:247:99:619,0,1945	0/1:123,78:220:99:380,0,2098	0/1:157,73:244:99:688,0,2821
+1	725582	.	G	A	1356.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.392;DP=998;Dels=0.00;FS=29.615;HaplotypeScore=187.0722;MLEAC=4;MLEAF=0.500;MQ=26.81;MQ0=189;MQRankSum=2.577;QD=1.36;ReadPosRankSum=1.042	GT:AD:DP:GQ:PL	0/1:207,41:249:99:565,0,2727	0/1:216,24:249:99:189,0,2605	0/1:217,23:250:99:192,0,2436	0/1:209,33:249:99:443,0,2769
+1	725587	.	G	A	32.98	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=7.085;DP=999;Dels=0.02;FS=2.388;HaplotypeScore=165.7905;MLEAC=2;MLEAF=0.250;MQ=25.81;MQ0=210;MQRankSum=-1.237;QD=0.07;ReadPosRankSum=1.806	GT:AD:DP:GQ:PL	0/1:223,24:247:22:22,0,2895	0/0:216,24:245:22:0,22,2231	0/0:229,16:245:44:0,44,2292	0/1:224,20:246:45:45,0,2397
+1	725591	.	G	A	341.97	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.108;DP=999;Dels=0.01;FS=8.067;HaplotypeScore=154.6432;MLEAC=3;MLEAF=0.375;MQ=25.45;MQ0=218;MQRankSum=-4.814;QD=0.46;ReadPosRankSum=5.964	GT:AD:DP:GQ:PL	0/1:209,39:249:18:18,0,3291	0/1:197,48:245:99:219,0,2219	0/0:210,32:247:99:0,123,2859	0/1:199,46:247:99:139,0,2709
+1	725600	.	T	A	536.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.064;DP=992;Dels=0.00;FS=3.094;HaplotypeScore=140.2967;MLEAC=4;MLEAF=0.500;MQ=25.19;MQ0=236;MQRankSum=0.967;QD=0.54;ReadPosRankSum=-0.632	GT:AD:DP:GQ:PL	0/1:200,31:249:99:189,0,2877	0/1:204,26:247:99:113,0,2265	0/1:196,29:242:99:162,0,2397	0/1:210,27:247:99:105,0,2633
+1	725606	.	T	C	91.49	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-6.372;DP=967;Dels=0.01;FS=12.262;HaplotypeScore=175.6321;MLEAC=2;MLEAF=0.250;MQ=25.48;MQ0=228;MQRankSum=-3.411;QD=0.19;ReadPosRankSum=1.915	GT:AD:DP:GQ:PL	0/0:201,34:247:73:0,73,3255	0/0:204,31:243:30:0,30,2603	0/1:176,34:224:6:6,0,2695	0/1:201,38:244:99:118,0,2850
+1	725611	.	G	A	163.96	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.624;DP=989;Dels=0.01;FS=4.438;HaplotypeScore=185.3910;MLEAC=3;MLEAF=0.375;MQ=25.07;MQ0=253;MQRankSum=2.845;QD=0.22;ReadPosRankSum=2.093	GT:AD:DP:GQ:PL	0/1:226,19:246:99:104,0,2985	0/1:230,18:248:19:19,0,2580	0/1:222,16:238:75:75,0,2726	0/0:235,12:248:49:0,49,3026
+1	725615	.	C	T	122.44	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=6.287;DP=989;Dels=0.01;FS=32.877;HaplotypeScore=193.3785;MLEAC=2;MLEAF=0.250;MQ=25.15;MQ0=251;MQRankSum=-1.324;QD=0.25;ReadPosRankSum=0.033	GT:AD:DP:GQ:PL	0/1:201,32:246:99:119,0,2585	0/0:224,19:248:1:0,1,2364	0/0:210,20:240:99:0,127,2811	0/1:221,22:246:35:35,0,2715
+1	725623	.	A	G	31.92	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=0.336;DP=999;Dels=0.00;FS=35.494;HaplotypeScore=210.7126;MLEAC=2;MLEAF=0.250;MQ=25.12;MQ0=253;MQRankSum=2.306;QD=0.06;ReadPosRankSum=-1.566	GT:AD:DP:GQ:PL	0/0:235,15:250:80:0,80,3488	0/0:238,11:249:99:0,133,2850	0/1:234,16:250:27:27,0,3059	0/1:231,18:249:39:39,0,3016
+1	725630	.	T	A	129.66	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.308;DP=965;Dels=0.03;FS=15.460;HaplotypeScore=160.7210;MLEAC=3;MLEAF=0.375;MQ=25.00;MQ0=251;MQRankSum=-2.293;QD=0.18;ReadPosRankSum=1.230	GT:AD:DP:GQ:PL	0/1:207,27:234:46:46,0,3207	0/1:205,24:229:99:112,0,2428	0/1:206,25:231:4:4,0,2816	0/0:220,26:246:13:0,13,3003
+1	725632	.	A	T	126.96	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-3.174;DP=946;Dels=0.03;FS=16.748;HaplotypeScore=167.4271;MLEAC=2;MLEAF=0.250;MQ=25.05;MQ0=244;MQRankSum=-2.638;QD=0.27;ReadPosRankSum=6.855	GT:AD:DP:GQ:PL	0/1:186,20:227:36:36,0,2847	0/0:179,25:220:59:0,59,2585	0/1:168,32:223:99:125,0,2340	0/0:203,30:247:19:0,19,2959
+1	725635	.	T	A	358.01	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.583;DP=961;Dels=0.00;FS=25.464;HaplotypeScore=190.2925;MLEAC=3;MLEAF=0.375;MQ=24.89;MQ0=244;MQRankSum=-0.920;QD=0.49;ReadPosRankSum=-1.286	GT:AD:DP:GQ:PL	0/1:193,42:241:99:320,0,2782	0/1:212,26:246:56:56,0,2734	0/0:209,13:228:99:0,131,3016	0/1:210,28:246:16:16,0,2983
+1	725642	.	G	T	130.03	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.760;DP=952;Dels=0.00;FS=37.450;HaplotypeScore=205.9782;MLEAC=2;MLEAF=0.250;MQ=25.43;MQ0=245;MQRankSum=2.202;QD=0.28;ReadPosRankSum=6.467	GT:AD:DP:GQ:PL	0/0:213,17:244:2:0,2,3005	0/0:222,9:243:99:0,141,2905	0/1:188,18:219:99:118,0,2477	0/1:217,19:246:44:44,0,2960
+1	725647	.	C	A	83.14	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.323;DP=950;Dels=0.00;FS=66.672;HaplotypeScore=139.2986;MLEAC=2;MLEAF=0.250;MQ=26.06;MQ0=246;MQRankSum=-6.092;QD=0.17;ReadPosRankSum=0.989	GT:AD:DP:GQ:PL	0/1:186,39:239:99:102,0,3030	0/1:187,44:247:15:15,0,2762	0/0:184,21:215:99:0,191,3068	0/0:202,43:249:99:0,106,3267
+1	725657	.	T	C	76.38	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-0.947;DP=918;Dels=0.00;FS=11.737;HaplotypeScore=99.0192;MLEAC=1;MLEAF=0.125;MQ=26.49;MQ0=244;MQRankSum=0.128;QD=0.32;ReadPosRankSum=0.278	GT:AD:DP:GQ:PL	0/0:216,10:233:99:0,118,3108	0/0:231,8:242:99:0,109,3023	0/0:190,10:207:17:0,17,2634	0/1:212,19:236:99:108,0,2923
+1	725667	.	G	T	281.96	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.507;DP=860;Dels=0.00;FS=1.431;HaplotypeScore=106.1032;MLEAC=4;MLEAF=0.500;MQ=27.34;MQ0=224;MQRankSum=1.086;QD=0.33;ReadPosRankSum=-0.073	GT:AD:DP:GQ:PL	0/1:200,20:220:99:181,0,2629	0/1:218,16:235:26:26,0,2824	0/1:169,14:185:84:84,0,2282	0/1:205,15:220:23:23,0,2978
+1	725669	.	C	T	192.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=3.841;DP=836;Dels=0.00;FS=24.105;HaplotypeScore=87.8459;MLEAC=2;MLEAF=0.250;MQ=27.44;MQ0=221;MQRankSum=-0.840;QD=0.49;ReadPosRankSum=-0.112	GT:AD:DP:GQ:PL	0/0:181,24:218:87:0,87,2922	0/0:185,17:227:99:0,125,2887	0/1:141,27:176:58:58,0,2134	0/1:172,29:214:99:169,0,2607
+1	725684	.	C	A	385.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.953;DP=431;Dels=0.03;FS=0.000;HaplotypeScore=54.5776;MLEAC=3;MLEAF=0.375;MQ=33.60;MQ0=93;MQRankSum=-8.132;QD=1.12;ReadPosRankSum=-5.139	GT:AD:DP:GQ:PL	0/1:75,18:93:99:123,0,1200	0/1:98,20:119:38:38,0,1796	0/0:70,15:85:99:0,110,1536	0/1:79,39:118:99:259,0,1718
+1	725686	.	T	G	88.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=4.989;DP=400;Dels=0.02;FS=0.000;HaplotypeScore=49.5494;MLEAC=2;MLEAF=0.250;MQ=34.74;MQ0=77;MQRankSum=-6.691;QD=0.43;ReadPosRankSum=-4.651	GT:AD:DP:GQ:PL	0/1:64,13:83:62:62,0,1283	0/0:92,12:111:50:0,50,1988	0/0:69,8:81:99:0,104,1468	0/1:82,23:116:61:61,0,1817
+1	725705	.	G	A	31.34	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-1.625;DP=279;Dels=0.00;FS=32.938;HaplotypeScore=19.1643;MLEAC=1;MLEAF=0.125;MQ=40.40;MQ0=45;MQRankSum=-3.618;QD=0.55;ReadPosRankSum=-1.433	GT:AD:DP:GQ:PL	0/1:42,9:57:63:63,0,919	0/0:70,4:79:99:0,102,1714	0/0:66,2:73:99:0,109,1493	0/0:61,6:70:99:0,110,1606
+1	725765	.	T	A	248.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.978;DP=536;Dels=0.01;FS=28.583;HaplotypeScore=44.9815;MLEAC=3;MLEAF=0.375;MQ=35.07;MQ0=94;MQRankSum=-4.627;QD=0.61;ReadPosRankSum=-2.651	GT:AD:DP:GQ:PL	0/1:118,16:134:36:36,0,1699	0/1:108,26:134:99:151,0,1878	0/0:101,21:124:33:0,33,1934	0/1:110,27:137:96:96,0,1996
+1	725777	.	G	C	120.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.384;DP=726;Dels=0.00;FS=26.112;HaplotypeScore=110.8354;MLEAC=1;MLEAF=0.125;MQ=33.21;MQ0=139;MQRankSum=-0.558;QD=0.64;ReadPosRankSum=0.549	GT:AD:DP:GQ:PL	0/0:146,12:175:93:0,93,2354	0/1:150,20:188:99:152,0,2159	0/0:142,7:168:81:0,81,2144	0/0:168,6:194:99:0,153,2620
+1	725784	.	A	T	30.36	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.007;DP=758;Dels=0.01;FS=56.426;HaplotypeScore=158.1739;MLEAC=1;MLEAF=0.125;MQ=33.35;MQ0=144;MQRankSum=-3.084;QD=0.17;ReadPosRankSum=2.684	GT:AD:DP:GQ:PL	0/0:159,16:177:99:0,147,2576	0/0:190,11:201:99:0,138,3170	0/1:155,18:173:62:62,0,2289	0/0:181,20:202:21:0,21,2877
+1	725785	.	G	T	186.61	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.972;DP=748;Dels=0.01;FS=10.761;HaplotypeScore=164.9744;MLEAC=2;MLEAF=0.250;MQ=33.62;MQ0=136;MQRankSum=-9.700;QD=0.32;ReadPosRankSum=-3.719	GT:AD:DP:GQ:PL	0/1:107,51:171:99:202,0,1791	0/1:122,56:199:99:134,0,2415	0/0:118,40:172:1:0,1,2238	0/1:146,39:201:16:16,0,2674
+1	725807	.	C	G	50.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.287;DP=985;Dels=0.00;FS=1.438;HaplotypeScore=121.5251;MLEAC=1;MLEAF=0.125;MQ=28.43;MQ0=225;MQRankSum=-2.053;QD=0.21;ReadPosRankSum=-2.431	GT:AD:DP:GQ:PL	0/0:221,14:248:99:0,160,3253	0/0:204,29:249:62:0,62,2593	0/1:199,25:241:82:82,0,2395	0/0:207,24:246:90:0,90,2879
+1	725810	.	T	G	49.33	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=2.932;DP=998;Dels=0.00;FS=29.585;HaplotypeScore=131.9978;MLEAC=1;MLEAF=0.125;MQ=28.13;MQ0=233;MQRankSum=1.246;QD=0.20;ReadPosRankSum=1.563	GT:AD:DP:GQ:PL	0/0:221,16:249:98:0,98,3100	0/1:218,19:249:81:81,0,2543	0/0:226,16:250:47:0,47,2732	0/0:223,12:249:99:0,115,3064
+1	725822	.	G	A	2376.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=11.052;DP=951;Dels=0.00;FS=30.006;HaplotypeScore=110.7683;MLEAC=4;MLEAF=0.500;MQ=28.68;MQ0=211;MQRankSum=-2.037;QD=2.50;ReadPosRankSum=3.837	GT:AD:DP:GQ:PL	0/1:171,56:235:99:607,0,2211	0/1:161,65:238:99:670,0,1685	0/1:166,71:240:99:754,0,1777	0/1:184,51:238:99:378,0,2102
+1	725841	.	T	G	458.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.173;DP=773;Dels=0.02;FS=1.876;HaplotypeScore=170.5990;MLEAC=3;MLEAF=0.375;MQ=33.31;MQ0=121;MQRankSum=-3.667;QD=0.80;ReadPosRankSum=5.561	GT:AD:DP:GQ:PL	0/1:154,27:181:99:109,0,2709	0/0:161,29:190:99:0,117,2727	0/1:146,35:181:99:234,0,2447	0/1:173,32:205:99:150,0,2696
+1	725855	.	T	A	415.42	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.602;DP=754;Dels=0.00;FS=21.180;HaplotypeScore=188.6320;MLEAC=3;MLEAF=0.375;MQ=35.96;MQ0=101;MQRankSum=-2.494;QD=0.74;ReadPosRankSum=0.404	GT:AD:DP:GQ:PL	0/0:173,21:196:11:0,11,3412	0/1:161,25:187:99:295,0,2590	0/1:156,17:174:50:50,0,2779	0/1:175,22:197:99:104,0,3064
+1	725861	.	G	T	2773.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.021;DP=744;Dels=0.00;FS=2.187;HaplotypeScore=103.8430;MLEAC=4;MLEAF=0.500;MQ=36.83;MQ0=95;MQRankSum=-5.576;QD=3.73;ReadPosRankSum=-6.650	GT:AD:DP:GQ:PL	0/1:124,67:192:99:888,0,2527	0/1:123,57:183:99:809,0,2181	0/1:132,37:171:99:417,0,2381	0/1:142,54:198:99:692,0,2565
+1	725872	.	G	A	59.35	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=6.460;DP=691;Dels=0.00;FS=40.014;HaplotypeScore=113.1679;MLEAC=1;MLEAF=0.125;MQ=39.32;MQ0=72;MQRankSum=-3.842;QD=0.34;ReadPosRankSum=2.126	GT:AD:DP:GQ:PL	0/1:153,21:175:89:89,0,2888	0/0:150,15:167:0:0,0,2647	0/0:140,8:150:99:0,164,2682	0/0:174,20:196:18:0,18,3289
+1	725879	.	T	A	962.96	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.804;DP=739;Dels=0.00;FS=14.515;HaplotypeScore=207.9247;MLEAC=4;MLEAF=0.500;MQ=39.90;MQ0=75;MQRankSum=-10.696;QD=1.30;ReadPosRankSum=-2.684	GT:AD:DP:GQ:PL	0/1:126,42:185:99:248,0,3003	0/1:140,39:187:22:22,0,3212	0/1:108,38:155:99:176,0,2408	0/1:149,54:211:99:549,0,3120
+1	725883	.	A	G	6443.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.916;DP=810;Dels=0.00;FS=5.347;HaplotypeScore=221.6868;MLEAC=4;MLEAF=0.500;MQ=38.73;MQ0=93;MQRankSum=-3.411;QD=7.96;ReadPosRankSum=5.609	GT:AD:DP:GQ:PL	0/1:110,98:208:99:2062,0,1782	0/1:119,86:205:99:1857,0,1698	0/1:117,55:172:99:1045,0,1889	0/1:134,91:225:99:1512,0,2639
+1	725886	.	G	A	1026.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.253;DP=893;Dels=0.00;FS=2.059;HaplotypeScore=223.8795;MLEAC=4;MLEAF=0.500;MQ=38.75;MQ0=95;MQRankSum=-3.423;QD=1.15;ReadPosRankSum=4.490	GT:AD:DP:GQ:PL	0/1:205,31:237:99:144,0,4278	0/1:185,31:216:99:149,0,3575	0/1:154,35:190:99:375,0,2967	0/1:211,39:250:99:391,0,4172
+1	725889	.	A	G	325.92	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.443;DP=903;Dels=0.00;FS=2.832;HaplotypeScore=217.0350;MLEAC=2;MLEAF=0.250;MQ=39.03;MQ0=88;MQRankSum=-4.448;QD=0.72;ReadPosRankSum=3.820	GT:AD:DP:GQ:PL	0/1:204,33:239:99:133,0,4402	0/1:190,24:214:99:227,0,3615	0/0:183,14:197:74:0,74,3711	0/0:227,23:250:24:0,24,4626
+1	725894	.	A	G	5256.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.260;DP=941;Dels=0.00;FS=6.206;HaplotypeScore=219.4077;MLEAC=4;MLEAF=0.500;MQ=38.20;MQ0=92;MQRankSum=-2.872;QD=5.59;ReadPosRankSum=5.911	GT:AD:DP:GQ:PL	0/1:160,88:248:99:1692,0,2902	0/1:161,72:233:99:1409,0,2705	0/1:163,47:210:99:886,0,2844	0/1:172,77:250:99:1302,0,3304
+1	725903	.	T	A	10656.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.641;DP=945;Dels=0.04;FS=12.428;HaplotypeScore=242.2666;MLEAC=4;MLEAF=0.500;MQ=37.15;MQ0=96;MQRankSum=-15.561;QD=11.28;ReadPosRankSum=-1.275	GT:AD:DP:GQ:PL	0/1:61,169:231:99:3080,0,894	0/1:77,149:229:99:2323,0,1378	0/1:70,137:212:99:2390,0,1386	0/1:69,167:237:99:2896,0,1288
+1	725905	.	T	A	149.69	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.479;DP=979;Dels=0.03;FS=0.000;HaplotypeScore=175.2614;MLEAC=3;MLEAF=0.375;MQ=34.40;MQ0=127;MQRankSum=-5.950;QD=0.20;ReadPosRankSum=0.502	GT:AD:DP:GQ:PL	0/1:210,31:241:7:7,0,4015	0/0:203,23:227:99:0,226,3626	0/1:200,37:237:99:141,0,3795	0/1:210,34:244:35:35,0,4073
+1	725937	.	G	C	786.96	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=3.679;DP=994;Dels=0.01;FS=0.789;HaplotypeScore=248.1717;MLEAC=4;MLEAF=0.500;MQ=26.11;MQ0=277;MQRankSum=0.319;QD=0.79;ReadPosRankSum=2.743	GT:AD:DP:GQ:PL	0/1:207,30:247:99:305,0,2250	0/1:201,30:247:99:286,0,1737	0/1:208,25:246:99:204,0,2275	0/1:202,29:246:24:24,0,2252
+1	725944	.	C	A	3448.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.666;DP=968;Dels=0.02;FS=5.923;HaplotypeScore=208.0441;MLEAC=4;MLEAF=0.500;MQ=26.51;MQ0=264;MQRankSum=-2.605;QD=3.56;ReadPosRankSum=3.101	GT:AD:DP:GQ:PL	0/1:143,76:238:99:869,0,1482	0/1:133,82:242:99:813,0,1234	0/1:141,76:236:99:911,0,1593	0/1:127,92:236:99:888,0,1357
+1	725946	.	G	A	55.82	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.136;DP=985;Dels=0.01;FS=74.304;HaplotypeScore=210.5399;MLEAC=2;MLEAF=0.250;MQ=26.46;MQ0=261;MQRankSum=0.554;QD=0.11;ReadPosRankSum=-2.747	GT:AD:DP:GQ:PL	0/1:200,16:242:83:83,0,2517	0/0:209,11:247:99:0,167,2508	0/0:203,16:241:96:0,96,2724	0/1:205,11:246:5:5,0,2244
+1	725947	.	C	G	95.42	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.319;DP=998;Dels=0.01;FS=1.987;HaplotypeScore=207.0876;MLEAC=3;MLEAF=0.375;MQ=26.69;MQ0=266;MQRankSum=-2.496;QD=0.13;ReadPosRankSum=2.485	GT:AD:DP:GQ:PL	0/1:211,28:247:9:9,0,2799	0/1:219,20:248:63:63,0,2123	0/1:212,27:245:57:57,0,2676	0/0:217,20:247:99:0,118,2693
+1	725952	.	G	C	45.96	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=4.045;DP=993;Dels=0.00;FS=45.193;HaplotypeScore=187.9693;MLEAC=2;MLEAF=0.250;MQ=26.58;MQ0=248;MQRankSum=1.962;QD=0.09;ReadPosRankSum=-0.265	GT:AD:DP:GQ:PL	0/1:229,15:248:59:59,0,2776	0/0:234,7:244:99:0,160,2511	0/0:234,14:250:99:0,108,2809	0/1:237,10:249:21:21,0,2456
+1	725962	.	A	G	494.45	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-5.443;DP=855;Dels=0.00;FS=7.188;HaplotypeScore=120.6639;MLEAC=4;MLEAF=0.500;MQ=28.65;MQ0=170;MQRankSum=-4.576;QD=0.58;ReadPosRankSum=0.028	GT:AD:DP:GQ:PL	0/1:167,41:219:99:198,0,2618	0/1:167,38:212:7:7,0,2079	0/1:152,46:206:99:128,0,2188	0/1:167,38:218:99:193,0,2103
+1	725977	.	G	T	161.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.352;DP=671;Dels=0.01;FS=1.373;HaplotypeScore=152.7010;MLEAC=3;MLEAF=0.375;MQ=31.44;MQ0=107;MQRankSum=-2.578;QD=0.33;ReadPosRankSum=3.847	GT:AD:DP:GQ:PL	0/1:141,16:160:51:51,0,2109	0/1:125,21:151:28:28,0,1847	0/1:147,23:174:99:117,0,2214	0/0:147,30:179:49:0,49,2303
+1	725980	.	C	T	3854.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.293;DP=592;Dels=0.04;FS=0.717;HaplotypeScore=152.9680;MLEAC=4;MLEAF=0.500;MQ=32.98;MQ0=84;MQRankSum=-12.024;QD=6.51;ReadPosRankSum=2.709	GT:AD:DP:GQ:PL	0/1:50,78:129:99:993,0,897	0/1:45,85:132:99:861,0,875	0/1:51,93:150:99:879,0,1122	0/1:46,113:159:99:1154,0,942
+1	725987	.	G	A	387.93	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=5.364;DP=656;Dels=0.00;FS=0.000;HaplotypeScore=178.4872;MLEAC=3;MLEAF=0.375;MQ=32.19;MQ0=98;MQRankSum=-1.387;QD=0.76;ReadPosRankSum=1.177	GT:AD:DP:GQ:PL	0/0:132,15:148:24:0,24,2150	0/1:134,24:158:99:209,0,1686	0/1:145,23:169:76:76,0,2059	0/1:155,26:181:99:137,0,2090
+1	725994	.	A	G	225.91	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.087;DP=690;Dels=0.00;FS=9.454;HaplotypeScore=118.1401;MLEAC=2;MLEAF=0.250;MQ=31.99;MQ0=111;MQRankSum=-1.169;QD=0.63;ReadPosRankSum=0.846	GT:AD:DP:GQ:PL	0/0:149,7:156:99:0,148,2656	0/1:147,21:168:99:224,0,1850	0/0:163,12:176:80:0,80,2511	0/1:172,17:190:36:36,0,2322
+1	725996	.	T	G	151.92	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.772;DP=684;Dels=0.00;FS=0.000;HaplotypeScore=99.4945;MLEAC=3;MLEAF=0.375;MQ=32.17;MQ0=107;MQRankSum=-3.530;QD=0.29;ReadPosRankSum=-5.780	GT:AD:DP:GQ:PL	0/1:113,25:158:99:124,0,1982	0/0:138,18:164:31:0,31,1981	0/1:141,22:174:32:32,0,2235	0/1:151,29:188:30:30,0,2204
+1	726009	.	C	T	141	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.548;DP=672;Dels=0.01;FS=4.143;HaplotypeScore=101.9743;MLEAC=2;MLEAF=0.250;MQ=33.88;MQ0=93;MQRankSum=-2.361;QD=0.40;ReadPosRankSum=6.461	GT:AD:DP:GQ:PL	0/0:135,7:152:99:0,120,2444	0/1:134,19:162:99:156,0,2050	0/0:141,11:163:72:0,72,2413	0/1:166,17:186:19:19,0,2404
+1	726010	.	C	T	731.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.643;DP=657;Dels=0.01;FS=13.749;HaplotypeScore=100.3025;MLEAC=4;MLEAF=0.500;MQ=34.19;MQ0=90;MQRankSum=-3.971;QD=1.11;ReadPosRankSum=-3.636	GT:AD:DP:GQ:PL	0/1:108,35:152:99:272,0,1886	0/1:116,32:154:99:187,0,1980	0/1:126,28:161:99:187,0,2148	0/1:145,28:181:99:118,0,2213
+1	726016	.	G	A	87.94	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.243;DP=739;Dels=0.00;FS=11.366;HaplotypeScore=108.1977;MLEAC=2;MLEAF=0.250;MQ=33.28;MQ0=107;MQRankSum=-1.366;QD=0.25;ReadPosRankSum=-3.653	GT:AD:DP:GQ:PL	0/1:147,19:166:37:37,0,2401	0/1:166,18:184:85:85,0,2385	0/0:171,6:177:99:0,170,2865	0/0:194,16:211:21:0,21,2849
+1	726029	.	C	A	731.90	HARD_TO_VALIDATE	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.205;DP=604;Dels=0.01;FS=3.219;HaplotypeScore=114.2410;MLEAC=3;MLEAF=0.375;MQ=36.09;MQ0=64;MQRankSum=-6.772;QD=1.61;ReadPosRankSum=2.771	GT:AD:DP:GQ:PL	0/0:121,23:147:63:0,63,2316	0/1:110,37:151:99:386,0,2061	0/1:105,24:132:75:75,0,2204	0/1:129,36:166:99:305,0,2189
+1	726031	.	G	T	194.88	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.881;DP=608;Dels=0.01;FS=8.867;HaplotypeScore=117.0005;MLEAC=3;MLEAF=0.375;MQ=36.27;MQ0=64;MQRankSum=-3.188;QD=0.41;ReadPosRankSum=3.189	GT:AD:DP:GQ:PL	0/1:122,20:146:99:130,0,2208	0/1:127,18:150:92:92,0,2290	0/0:119,7:129:99:0,113,2539	0/1:153,18:176:6:6,0,2703
+1	726064	.	A	G	216.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-4.032;DP=807;Dels=0.00;FS=52.530;HaplotypeScore=82.4313;MLEAC=2;MLEAF=0.250;MQ=33.21;MQ0=157;MQRankSum=-1.592;QD=0.53;ReadPosRankSum=-0.983	GT:AD:DP:GQ:PL	0/0:195,14:210:43:0,43,3013	0/1:178,19:199:99:185,0,2386	0/0:167,13:184:57:0,57,2974	0/1:186,25:214:66:66,0,3149
+1	726066	.	G	A	405.90	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=4.817;DP=812;Dels=0.00;FS=13.692;HaplotypeScore=74.5183;MLEAC=3;MLEAF=0.375;MQ=33.40;MQ0=155;MQRankSum=-2.185;QD=0.65;ReadPosRankSum=3.902	GT:AD:DP:GQ:PL	0/1:187,25:212:99:168,0,2799	0/1:177,23:201:99:143,0,2503	0/0:168,17:185:99:0,110,3103	0/1:190,23:214:99:129,0,3063
+1	726082	.	G	C	242.37	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.903;DP=663;Dels=0.00;FS=56.198;HaplotypeScore=36.3378;MLEAC=3;MLEAF=0.375;MQ=36.29;MQ0=102;MQRankSum=-3.667;QD=0.47;ReadPosRankSum=4.571	GT:AD:DP:GQ:PL	0/1:164,17:181:4:4,0,2872	0/1:142,18:160:99:170,0,2218	0/0:132,14:147:28:0,28,2737	0/1:146,29:175:99:101,0,2874
+1	726099	.	A	T	56.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=0.837;DP=640;Dels=0.03;FS=9.441;HaplotypeScore=88.9434;MLEAC=1;MLEAF=0.125;MQ=38.07;MQ0=70;MQRankSum=-2.927;QD=0.34;ReadPosRankSum=-0.536	GT:AD:DP:GQ:PL	0/0:143,16:159:46:0,46,2838	0/1:142,18:160:88:88,0,2440	0/0:126,11:137:41:0,41,2753	0/0:149,12:162:34:0,34,2905
+1	726100	.	A	G	76.45	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=0.351;DP=636;Dels=0.03;FS=10.857;HaplotypeScore=101.7480;MLEAC=1;MLEAF=0.125;MQ=37.95;MQ0=70;MQRankSum=-2.891;QD=0.47;ReadPosRankSum=-0.602	GT:AD:DP:GQ:PL	0/0:139,18:157:14:0,14,2739	0/1:141,18:159:99:108,0,2424	0/0:130,10:140:57:0,57,2858	0/0:148,12:160:21:0,21,2768
+1	726107	.	T	G	3233.06	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.289;DP=590;Dels=0.01;FS=63.325;HaplotypeScore=117.7532;MLEAC=4;MLEAF=0.500;MQ=38.68;MQ0=69;MQRankSum=-9.445;QD=5.48;ReadPosRankSum=3.198	GT:AD:DP:GQ:PL	0/1:86,61:153:99:691,0,1863	0/1:91,57:151:99:895,0,1536	0/1:81,45:129:99:763,0,1807	0/1:83,64:149:99:917,0,1706
+1	726110	.	A	T	162.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.310;DP=624;Dels=0.01;FS=4.076;HaplotypeScore=102.9881;MLEAC=2;MLEAF=0.250;MQ=37.73;MQ0=85;MQRankSum=-4.020;QD=0.54;ReadPosRankSum=2.463	GT:AD:DP:GQ:PL	0/1:138,18:158:75:75,0,2532	0/0:152,14:166:52:0,52,2603	0/1:119,17:137:99:122,0,2462	0/0:140,15:155:62:0,62,2609
+1	726113	.	C	G	2176.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.135;DP=645;Dels=0.01;FS=30.015;HaplotypeScore=98.9326;MLEAC=4;MLEAF=0.500;MQ=37.09;MQ0=102;MQRankSum=-8.321;QD=3.38;ReadPosRankSum=1.219	GT:AD:DP:GQ:PL	0/1:120,44:165:99:358,0,2333	0/1:108,60:171:99:749,0,1771	0/1:93,45:138:99:519,0,1899	0/1:108,54:163:99:583,0,1937
+1	726145	.	C	T	756.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.087;DP=950;Dels=0.00;FS=0.692;HaplotypeScore=111.5165;MLEAC=4;MLEAF=0.500;MQ=30.78;MQ0=180;MQRankSum=-7.851;QD=0.80;ReadPosRankSum=-9.110	GT:AD:DP:GQ:PL	0/1:180,52:235:99:291,0,2884	0/1:163,71:237:89:89,0,2368	0/1:195,40:237:66:66,0,2966	0/1:174,61:239:99:343,0,2479
+1	726156	.	T	A	888.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.092;DP=967;Dels=0.01;FS=0.398;HaplotypeScore=147.1781;MLEAC=4;MLEAF=0.500;MQ=30.79;MQ0=165;MQRankSum=3.323;QD=0.92;ReadPosRankSum=8.872	GT:AD:DP:GQ:PL	0/1:210,29:239:99:300,0,3156	0/1:215,23:239:99:137,0,2601	0/1:215,25:240:99:183,0,2866	0/1:209,30:239:99:301,0,2540
+1	726159	.	C	A	105.35	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.116;DP=936;Dels=0.01;FS=7.924;HaplotypeScore=144.5960;MLEAC=1;MLEAF=0.125;MQ=30.86;MQ0=154;MQRankSum=-4.992;QD=0.44;ReadPosRankSum=2.739	GT:AD:DP:GQ:PL	0/0:196,34:230:60:0,60,3544	0/1:197,35:235:99:137,0,2487	0/0:195,35:231:22:0,22,3002	0/0:197,30:229:99:0,156,3113
+1	726173	.	G	A	322.35	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.204;DP=935;Dels=0.00;FS=0.544;HaplotypeScore=131.7537;MLEAC=2;MLEAF=0.250;MQ=30.22;MQ0=134;MQRankSum=3.256;QD=0.70;ReadPosRankSum=6.943	GT:AD:DP:GQ:PL	0/1:199,23:222:99:109,0,3363	0/0:215,19:241:10:0,10,2810	0/0:213,18:236:21:0,21,3297	0/1:205,27:236:99:247,0,2855
+1	726178	.	A	G	270.92	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-4.917;DP=957;Dels=0.04;FS=3.302;HaplotypeScore=211.6951;MLEAC=2;MLEAF=0.250;MQ=30.46;MQ0=136;MQRankSum=-7.712;QD=0.56;ReadPosRankSum=9.060	GT:AD:DP:GQ:PL	0/0:181,41:226:34:0,34,3771	0/1:173,52:232:97:97,0,2538	0/0:179,42:226:26:0,26,3331	0/1:167,55:229:99:208,0,3027
+1	726183	.	C	A	971.45	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.774;DP=941;Dels=0.00;FS=4.634;HaplotypeScore=200.3178;MLEAC=4;MLEAF=0.500;MQ=30.12;MQ0=135;MQRankSum=1.222;QD=1.03;ReadPosRankSum=-4.574	GT:AD:DP:GQ:PL	0/1:180,40:235:99:378,0,3290	0/1:185,29:239:7:7,0,2309	0/1:182,32:233:99:146,0,3074	0/1:165,40:232:99:472,0,2564
+1	726185	.	T	A	5407.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.369;DP=949;Dels=0.01;FS=0.850;HaplotypeScore=190.0846;MLEAC=4;MLEAF=0.500;MQ=29.90;MQ0=141;MQRankSum=-13.059;QD=5.70;ReadPosRankSum=10.908	GT:AD:DP:GQ:PL	0/1:108,129:237:99:1276,0,2332	0/1:90,145:241:99:1138,0,1452	0/1:99,133:233:99:1179,0,2123	0/1:76,147:227:99:1847,0,1489
+1	726203	.	G	T	99.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=6.357;DP=981;Dels=0.00;FS=5.796;HaplotypeScore=120.1611;MLEAC=2;MLEAF=0.250;MQ=27.06;MQ0=169;MQRankSum=0.102;QD=0.20;ReadPosRankSum=4.404	GT:AD:DP:GQ:PL	0/1:211,22:249:64:64,0,3321	0/0:208,17:245:89:0,89,2541	0/1:216,18:248:70:70,0,2599	0/0:212,8:239:99:0,128,3099
+1	726205	.	A	T	154.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.882;DP=983;Dels=0.00;FS=3.934;HaplotypeScore=119.6273;MLEAC=2;MLEAF=0.250;MQ=26.73;MQ0=176;MQRankSum=-0.001;QD=0.31;ReadPosRankSum=4.938	GT:AD:DP:GQ:PL	0/1:210,21:250:95:95,0,3406	0/0:201,16:243:71:0,71,2507	0/1:216,19:250:94:94,0,2741	0/0:206,10:239:87:0,87,3088
+1	726220	.	C	T	121.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-2.737;DP=816;Dels=0.02;FS=31.232;HaplotypeScore=124.0530;MLEAC=2;MLEAF=0.250;MQ=27.08;MQ0=176;MQRankSum=-2.192;QD=0.30;ReadPosRankSum=4.140	GT:AD:DP:GQ:PL	0/1:172,22:204:75:75,0,2750	0/0:169,24:201:99:0,103,2529	0/0:169,21:193:42:0,42,2305	0/1:172,18:199:81:81,0,2331
+1	726235	.	G	T	184.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.216;DP=482;Dels=0.00;FS=2.428;HaplotypeScore=63.0348;MLEAC=3;MLEAF=0.375;MQ=30.97;MQ0=91;MQRankSum=-4.845;QD=0.50;ReadPosRankSum=1.672	GT:AD:DP:GQ:PL	0/1:98,14:121:30:30,0,1749	0/1:100,24:132:98:98,0,1744	0/0:93,17:115:61:0,61,1766	0/1:85,18:112:91:91,0,1594
+1	726248	.	A	G	519.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-8.216;DP=372;Dels=0.00;FS=16.356;HaplotypeScore=33.5390;MLEAC=4;MLEAF=0.500;MQ=33.83;MQ0=50;MQRankSum=-10.339;QD=1.40;ReadPosRankSum=1.577	GT:AD:DP:GQ:PL	0/1:52,30:95:99:163,0,1415	0/1:59,25:99:99:130,0,1565	0/1:45,29:89:62:62,0,1261	0/1:47,31:89:99:197,0,1175
+1	726481	.	T	G	5934.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.648;DP=219;Dels=0.00;FS=5.366;HaplotypeScore=1.7519;MLEAC=8;MLEAF=1.00;MQ=50.09;MQ0=20;MQRankSum=6.148;QD=27.10;ReadPosRankSum=4.828	GT:AD:DP:GQ:PL	1/1:10,55:65:99:1666,103,0	1/1:9,53:62:99:1706,124,0	1/1:2,47:49:99:1600,138,0	1/1:12,31:43:61:988,61,0
+1	726564	.	T	C	205.88	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-8.278;DP=529;Dels=0.00;FS=0.000;HaplotypeScore=24.6222;MLEAC=3;MLEAF=0.375;MQ=34.23;MQ0=121;MQRankSum=-6.545;QD=0.51;ReadPosRankSum=-7.182	GT:AD:DP:GQ:PL	0/1:102,27:129:99:169,0,1554	0/1:105,28:133:64:64,0,1369	0/0:105,23:128:39:0,39,1992	0/1:102,36:138:6:6,0,1412
+1	726601	.	A	G	632.73	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.227;DP=851;Dels=0.03;FS=1.276;HaplotypeScore=124.9361;MLEAC=4;MLEAF=0.500;MQ=22.45;MQ0=313;MQRankSum=-6.946;QD=0.74;ReadPosRankSum=-4.122	GT:AD:DP:GQ:PL	0/1:140,62:210:99:251,0,1369	0/1:149,45:202:5:5,0,1421	0/1:143,64:213:99:221,0,1431	0/1:122,65:198:99:187,0,1117
+1	726728	.	T	A	121.89	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.838;DP=849;Dels=0.00;FS=7.147;HaplotypeScore=32.0945;MLEAC=3;MLEAF=0.375;MQ=29.60;MQ0=346;MQRankSum=-0.132;QD=0.19;ReadPosRankSum=-5.724	GT:AD:DP:GQ:PL	0/1:187,15:203:34:34,0,1684	0/1:214,15:230:50:50,0,1904	0/1:185,23:208:71:71,0,2014	0/0:194,11:208:8:0,8,1771
+1	726733	.	T	C	181.68	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.428;DP=821;Dels=0.00;FS=8.692;HaplotypeScore=30.8261;MLEAC=3;MLEAF=0.375;MQ=29.66;MQ0=341;MQRankSum=0.039;QD=0.30;ReadPosRankSum=-5.248	GT:AD:DP:GQ:PL	0/1:184,9:194:82:82,0,1561	0/1:207,11:220:53:53,0,1836	0/1:183,13:199:79:79,0,1890	0/0:197,9:207:5:0,5,1707
+1	726739	.	G	C	184.69	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-5.326;DP=720;Dels=0.00;FS=8.604;HaplotypeScore=29.8014;MLEAC=4;MLEAF=0.500;MQ=31.72;MQ0=272;MQRankSum=-0.954;QD=0.26;ReadPosRankSum=-3.460	GT:AD:DP:GQ:PL	0/1:154,12:167:78:78,0,1615	0/1:180,12:194:57:57,0,1830	0/1:158,13:172:79:79,0,1928	0/1:176,11:187:1:1,0,1685
+1	726764	.	G	T	305.05	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=0.424;DP=294;Dels=0.00;FS=0.678;HaplotypeScore=15.1044;MLEAC=4;MLEAF=0.500;MQ=50.39;MQ0=25;MQRankSum=-7.299;QD=1.04;ReadPosRankSum=8.255	GT:AD:DP:GQ:PL	0/1:57,9:66:99:107,0,1433	0/1:69,11:80:93:93,0,1612	0/1:68,14:82:99:123,0,1642	0/1:59,7:66:14:14,0,1451
+1	726767	.	T	A	335.99	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=1.810;DP=266;Dels=0.00;FS=0.000;HaplotypeScore=7.9346;MLEAC=4;MLEAF=0.500;MQ=52.28;MQ0=13;MQRankSum=-9.040;QD=1.26;ReadPosRankSum=8.610	GT:AD:DP:GQ:PL	0/1:42,9:56:99:119,0,1283	0/1:58,13:79:89:89,0,1597	0/1:53,13:71:99:142,0,1453	0/1:47,8:60:18:18,0,1323
+1	726922	.	C	A	1664.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.552;DP=902;Dels=0.00;FS=17.669;HaplotypeScore=111.1723;MLEAC=4;MLEAF=0.500;MQ=19.33;MQ0=251;MQRankSum=-0.385;QD=1.85;ReadPosRankSum=-3.402	GT:AD:DP:GQ:PL	0/1:138,84:231:99:470,0,941	0/1:115,77:201:99:319,0,1084	0/1:152,82:245:99:547,0,1306	0/1:147,59:223:99:361,0,1240
+1	726924	.	T	G	710.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.417;DP=921;Dels=0.00;FS=0.000;HaplotypeScore=117.1164;MLEAC=4;MLEAF=0.500;MQ=19.48;MQ0=269;MQRankSum=0.891;QD=0.77;ReadPosRankSum=-3.380	GT:AD:DP:GQ:PL	0/1:149,44:232:99:208,0,1231	0/1:144,34:200:99:128,0,1153	0/1:145,52:248:99:321,0,1318	0/1:159,43:237:86:86,0,1387
+1	726942	.	A	C	35.33	HARD_TO_VALIDATE;LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-0.596;DP=960;Dels=0.00;FS=1.024;HaplotypeScore=97.3420;MLEAC=1;MLEAF=0.125;MQ=18.51;MQ0=321;MQRankSum=-0.104;QD=0.14;ReadPosRankSum=1.252	GT:AD:DP:GQ:PL	0/0:209,19:241:67:0,67,1548	0/0:202,14:221:43:0,43,1446	0/0:218,22:249:76:0,76,1759	0/1:211,19:249:67:67,0,1283
+1	726944	.	C	G	1253.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=11.747;DP=968;Dels=0.00;FS=4.048;HaplotypeScore=97.7848;MLEAC=4;MLEAF=0.500;MQ=17.93;MQ0=329;MQRankSum=-1.461;QD=1.30;ReadPosRankSum=5.717	GT:AD:DP:GQ:PL	0/1:145,71:241:99:492,0,443	0/1:161,44:230:99:367,0,569	0/1:174,56:248:99:278,0,870	0/1:174,57:249:99:149,0,890
+1	727004	.	C	A	115.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=6.917;DP=928;Dels=0.00;FS=8.253;HaplotypeScore=97.7309;MLEAC=1;MLEAF=0.125;MQ=23.46;MQ0=346;MQRankSum=3.090;QD=0.51;ReadPosRankSum=-2.804	GT:AD:DP:GQ:PL	0/0:213,5:236:99:0,141,1851	0/1:207,13:228:99:147,0,1409	0/0:207,10:236:35:0,35,1401	0/0:198,8:227:73:0,73,1295
+1	727018	.	A	T	43.93	HARD_TO_VALIDATE;LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-2.437;DP=768;Dels=0.01;FS=5.600;HaplotypeScore=51.8242;MLEAC=2;MLEAF=0.250;MQ=27.48;MQ0=253;MQRankSum=-3.527;QD=0.11;ReadPosRankSum=3.092	GT:AD:DP:GQ:PL	0/1:172,22:198:24:24,0,1843	0/0:170,24:197:99:0,178,2176	0/1:159,23:182:54:54,0,1799	0/0:155,24:185:99:0,135,1756
+1	727024	.	G	A	78.33	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=3.007;DP=678;Dels=0.00;FS=12.696;HaplotypeScore=47.0993;MLEAC=1;MLEAF=0.125;MQ=29.06;MQ0=214;MQRankSum=2.377;QD=0.47;ReadPosRankSum=4.690	GT:AD:DP:GQ:PL	0/0:181,3:184:99:0,142,2088	0/1:151,11:166:99:110,0,1635	0/0:160,6:168:69:0,69,1923	0/0:156,3:160:99:0,99,1525
+1	727030	.	A	G	105.34	HARD_TO_VALIDATE;LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-1.831;DP=431;Dels=0.00;FS=18.155;HaplotypeScore=22.3123;MLEAC=1;MLEAF=0.125;MQ=35.60;MQ0=103;MQRankSum=-2.602;QD=0.96;ReadPosRankSum=4.512	GT:AD:DP:GQ:PL	0/0:101,9:112:50:0,50,1608	0/1:94,14:110:99:137,0,1377	0/0:93,10:103:47:0,47,1680	0/0:92,12:106:30:0,30,1299
+1	728159	.	C	T	2177.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.2493;MLEAC=8;MLEAF=1.00;MQ=26.81;MQ0=24;QD=20.16	GT:AD:DP:GQ:PL	1/1:0,28:28:48:506,48,0	1/1:0,28:28:57:596,57,0	1/1:0,21:21:39:431,39,0	1/1:0,30:30:63:670,63,0
+1	728242	.	C	G	2871.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=8;MLEAF=1.00;MQ=27.81;MQ0=21;QD=22.61	GT:AD:DP:GQ:PL	1/1:0,28:28:54:560,54,0	1/1:0,27:27:63:645,63,0	1/1:0,37:37:75:830,75,0	1/1:0,35:35:84:862,84,0
+1	729679	.	C	G	4789.35	PASS	AC=8;AF=1.00;AN=8;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.9931;MLEAC=8;MLEAF=1.00;MQ=47.73;MQ0=0;QD=31.30	GT:AD:DP:GQ:PL	1/1:1,37:38:99:1125,99,0	1/1:0,40:40:99:1306,117,0	1/1:0,34:34:99:1111,102,0	1/1:0,41:41:99:1273,114,0
+1	730825	.	C	T	1678.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.903;DP=126;Dels=0.00;FS=2.276;HaplotypeScore=0.6022;MLEAC=4;MLEAF=0.500;MQ=38.06;MQ0=1;MQRankSum=0.032;QD=13.32;ReadPosRankSum=1.422	GT:AD:DP:GQ:PL	0/1:13,13:26:99:265,0,329	0/1:9,18:27:99:522,0,224	0/1:19,15:34:99:390,0,528	0/1:19,20:39:99:534,0,485
+1	733998	.	C	T	373.08	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=18.62;MQ0=14;QD=12.44	GT:AD:DP:GQ:PL	./.	1/1:0,14:14:18:181,18,0	1/1:0,2:2:3:30,3,0	1/1:0,14:14:18:187,18,0
+1	734042	.	G	A	1374.38	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.6972;MLEAC=8;MLEAF=1.00;MQ=32.70;MQ0=12;QD=22.17	GT:AD:DP:GQ:PL	1/1:0,10:10:18:208,18,0	1/1:0,18:18:33:363,33,0	1/1:0,12:12:24:271,24,0	1/1:0,22:22:51:558,51,0
+1	734462	.	G	A	1095.37	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.5887;MLEAC=8;MLEAF=1.00;MQ=31.45;MQ0=11;QD=23.31	GT:AD:DP:GQ:PL	1/1:1,13:14:24:262,24,0	1/1:2,10:12:27:302,27,0	1/1:0,13:13:30:322,30,0	1/1:0,8:8:21:235,21,0
+1	734491	.	T	C	466.20	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.576;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=21.13;MQ0=14;MQRankSum=1.103;QD=12.95;ReadPosRankSum=1.103	GT:AD:DP:GQ:PL	1/1:1,9:10:3:23,3,0	1/1:0,11:11:18:182,18,0	1/1:0,11:11:21:220,21,0	1/1:0,4:4:6:66,6,0
+1	735426	.	G	A	1164.39	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=21.77;MQ0=29;QD=15.74	GT:AD:DP:GQ:PL	1/1:0,11:11:15:158,15,0	1/1:0,22:22:30:316,30,0	1/1:0,23:23:36:373,36,0	1/1:0,18:18:33:343,33,0
+1	735682	.	G	C	1529.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.619;DP=118;Dels=0.00;FS=3.471;HaplotypeScore=0.8922;MLEAC=4;MLEAF=0.500;MQ=37.22;MQ0=2;MQRankSum=1.299;QD=12.97;ReadPosRankSum=0.362	GT:AD:DP:GQ:PL	0/1:10,11:21:99:284,0,170	0/1:14,21:35:99:526,0,336	0/1:21,18:40:99:481,0,490	0/1:10,12:22:99:271,0,244
+1	736522	.	A	T	1091.40	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.36;MQ0=16;QD=20.21	GT:AD:DP:GQ:PL	1/1:0,20:20:39:445,39,0	1/1:0,6:6:15:174,15,0	1/1:0,13:13:24:267,24,0	1/1:0,14:15:21:231,21,0
+1	736523	.	T	C	1194.38	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=28.50;MQ0=16;QD=21.33	GT:AD:DP:GQ:PL	1/1:0,20:20:39:450,39,0	1/1:0,7:7:18:202,18,0	1/1:0,13:13:24:273,24,0	1/1:0,16:16:27:295,27,0
+1	737740	.	G	A	507.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.702;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=0.3325;MLEAC=4;MLEAF=0.500;MQ=22.67;MQ0=74;MQRankSum=-2.568;QD=2.57;ReadPosRankSum=0.443	GT:AD:DP:GQ:PL	0/1:38,9:47:46:46,0,506	0/1:37,13:50:99:218,0,558	0/1:30,15:45:76:76,0,484	0/1:41,15:56:99:200,0,537
+1	739210	.	A	G	2682.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=0.771;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.2892;MLEAC=8;MLEAF=1.00;MQ=35.15;MQ0=16;MQRankSum=4.759;QD=23.12;ReadPosRankSum=1.014	GT:AD:DP:GQ:PL	1/1:6,24:30:54:625,54,0	1/1:6,21:27:51:561,51,0	1/1:3,33:36:84:931,84,0	1/1:2,21:23:54:591,54,0
+1	739426	.	A	G	2224.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=1.686;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7862;MLEAC=8;MLEAF=1.00;MQ=30.94;MQ0=25;MQRankSum=-1.732;QD=22.02;ReadPosRankSum=-0.069	GT:AD:DP:GQ:PL	1/1:0,21:22:45:520,45,0	1/1:0,27:27:60:652,60,0	1/1:0,27:27:51:574,51,0	1/1:1,23:25:45:504,45,0
+1	739528	.	G	A	2236.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6248;MLEAC=8;MLEAF=1.00;MQ=33.99;MQ0=11;QD=25.71	GT:AD:DP:GQ:PL	1/1:0,15:15:33:365,33,0	1/1:0,22:23:54:606,54,0	1/1:0,19:19:42:460,42,0	1/1:0,30:30:75:831,75,0
+1	741579	.	T	C	1364.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.1951;MLEAC=8;MLEAF=1.00;MQ=22.64;MQ0=22;QD=17.05	GT:AD:DP:GQ:PL	1/1:0,21:22:39:398,39,0	1/1:0,17:17:24:224,24,0	1/1:0,15:15:36:366,36,0	1/1:0,25:26:42:402,42,0
+1	743021	.	T	C	651.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.995;DP=146;Dels=0.00;FS=1.824;HaplotypeScore=0.7067;MLEAC=4;MLEAF=0.500;MQ=20.76;MQ0=64;MQRankSum=-3.163;QD=4.47;ReadPosRankSum=0.565	GT:AD:DP:GQ:PL	0/1:25,11:36:99:146,0,306	0/1:22,10:32:58:58,0,347	0/1:21,16:37:99:213,0,242	0/1:23,18:41:99:267,0,226
+1	743072	.	C	A	3367.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.6606;MLEAC=8;MLEAF=1.00;MQ=27.04;MQ0=37;QD=22.15	GT:AD:DP:GQ:PL	1/1:8,28:36:63:672,63,0	1/1:5,37:42:99:1032,99,0	1/1:3,26:29:66:655,66,0	1/1:3,42:45:99:1034,102,0
+1	744304	.	C	T	1453.12	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=2.262;DP=167;Dels=0.00;FS=48.875;HaplotypeScore=0.3898;MLEAC=5;MLEAF=0.625;MQ=16.69;MQ0=81;MQRankSum=0.945;QD=8.70;ReadPosRankSum=-0.201	GT:AD:DP:GQ:PL	0/1:11,27:38:56:411,0,56	1/1:18,23:41:15:384,15,0	0/1:18,16:34:92:273,0,92	0/1:27,27:54:99:419,0,147
+1	745123	.	A	C	154.91	HARD_TO_VALIDATE	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.776;DP=174;Dels=0.00;FS=17.918;HaplotypeScore=2.2102;MLEAC=2;MLEAF=0.250;MQ=30.03;MQ0=58;MQRankSum=-0.107;QD=2.04;ReadPosRankSum=-0.633	GT:AD:DP:GQ:PL	0/0:57,3:60:96:0,96,1092	0/1:31,7:38:99:126,0,566	0/1:30,8:38:63:63,0,548	0/0:32,4:36:26:0,26,662
+1	745347	.	T	C	284.10	PASS	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.055;DP=159;Dels=0.00;FS=1.908;HaplotypeScore=1.6568;MLEAC=2;MLEAF=0.250;MQ=33.71;MQ0=6;MQRankSum=-0.919;QD=3.74;ReadPosRankSum=-4.901	GT:AD:DP:GQ:PL	0/0:43,3:47:73:0,73,1251	0/1:29,14:43:99:276,0,673	0/0:32,4:36:5:0,5,865	0/1:28,5:33:41:41,0,799
+1	746368	.	C	A	64.12	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.598;DP=156;Dels=0.00;FS=4.107;HaplotypeScore=2.3610;MLEAC=3;MLEAF=0.375;MQ=33.22;MQ0=6;MQRankSum=-6.074;QD=0.59;ReadPosRankSum=1.218	GT:AD:DP:GQ:PL	0/1:24,7:32:63:63,0,621	0/0:39,8:47:9:0,9,1119	0/1:27,6:33:31:31,0,716	0/1:37,7:44:1:1,0,1021
+1	748878	.	G	T	3183.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.4461;MLEAC=8;MLEAF=1.00;MQ=24.97;MQ0=30;QD=21.36	GT:AD:DP:GQ:PL	1/1:3,33:36:72:750,72,0	1/1:5,38:43:87:877,87,0	1/1:4,34:38:87:890,87,0	1/1:2,29:31:69:692,69,0
+1	749265	.	G	A	564.68	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=11.37;MQ0=76;QD=5.88	GT:AD:DP:GQ:PL	1/1:11,8:19:6:59,6,0	1/1:15,14:29:15:150,15,0	1/1:9,17:26:18:174,18,0	1/1:10,12:22:21:207,21,0
+1	749517	.	C	T	71.45	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=0.203;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.1446;MLEAC=2;MLEAF=0.250;MQ=12.82;MQ0=62;MQRankSum=-0.880;QD=1.32;ReadPosRankSum=0.519	GT:AD:DP:GQ:PL	0/0:19,2:21:12:0,12,124	0/1:18,8:26:70:70,0,101	0/0:16,2:18:12:0,12,111	0/1:23,5:28:35:35,0,158
+1	749592	.	G	A	152.18	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=9.81;MQ0=33;QD=3.46	GT:AD:DP:GQ:PL	1/1:0,13:13:6:61,6,0	1/1:0,8:8:3:32,3,0	1/1:0,9:9:6:57,6,0	1/1:0,14:14:3:26,3,0
+1	749644	.	T	C	73.52	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.058;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=4;MLEAF=0.500;MQ=12.19;MQ0=34;MQRankSum=-0.289;QD=1.93;ReadPosRankSum=0.521	GT:AD:DP:GQ:PL	0/1:10,5:15:21:52,0,21	1/1:5,3:8:3:32,3,0	0/0:4,7:11:3:0,3,32	0/1:9,6:15:21:21,0,46
+1	749683	.	C	G	65	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.4989;MLEAC=4;MLEAF=1.00;MQ=12.08;MQ0=19;QD=3.42	GT:AD:DP:GQ:PL	1/1:1,9:10:3:30,3,0	./.	./.	1/1:1,8:9:6:59,6,0
+1	749720	.	A	G	56.09	HARD_TO_VALIDATE	AC=4;AF=0.667;AN=6;BaseQRankSum=0.000;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.1928;MLEAC=5;MLEAF=0.833;MQ=16.04;MQ0=14;MQRankSum=-0.720;QD=4.01;ReadPosRankSum=0.720	GT:AD:DP:GQ:PL	1/1:6,4:10:6:53,6,0	1/1:2,2:4:3:32,3,0	0/0:3,1:4:3:0,3,26	./.
+1	749856	.	C	T	1166.92	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=4.360;DP=85;Dels=0.00;FS=8.614;HaplotypeScore=0.2290;MLEAC=7;MLEAF=0.875;MQ=24.04;MQ0=18;MQRankSum=2.233;QD=13.73;ReadPosRankSum=0.976	GT:AD:DP:GQ:PL	1/1:4,20:24:33:367,33,0	1/1:2,17:19:12:330,12,0	1/1:4,17:21:8:321,8,0	0/1:4,17:21:26:180,0,26
+1	749989	.	C	T	480.08	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.2367;MLEAC=8;MLEAF=1.00;MQ=29.01;MQ0=7;QD=20.00	GT:AD:DP:GQ:PL	1/1:1,6:7:9:102,9,0	1/1:0,8:8:18:189,18,0	1/1:0,3:3:3:36,3,0	1/1:0,6:6:15:178,15,0
+1	749997	.	A	G	357.27	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.2367;MLEAC=8;MLEAF=1.00;MQ=28.58;MQ0=7;QD=16.24	GT:AD:DP:GQ:PL	1/1:1,6:7:9:98,9,0	1/1:0,7:7:12:137,12,0	1/1:0,3:3:3:38,3,0	1/1:0,5:5:9:109,9,0
+1	750013	.	C	T	63	HARD_TO_VALIDATE	AC=4;AF=1.00;AN=4;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=4;MLEAF=1.00;MQ=16.63;MQ0=5;QD=12.60	GT:AD:DP:GQ:PL	./.	1/1:0,4:4:6:53,6,0	1/1:0,1:1:3:34,3,0	./.
+1	750342	.	C	T	54.80	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=10.80;MQ0=20;QD=3.04	GT:AD:DP:GQ:PL	1/1:1,6:8:3:24,3,0	./.	1/1:0,6:6:3:24,3,0	1/1:0,4:4:3:30,3,0
+1	752566	.	G	A	4818.35	PASS	AC=8;AF=1.00;AN=8;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.2290;MLEAC=8;MLEAF=1.00;MQ=57.23;MQ0=0;QD=33.46	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1138,99,0	1/1:0,43:43:99:1453,129,0	1/1:0,32:32:93:1070,93,0	1/1:0,35:35:99:1183,105,0
+1	752721	.	A	G	5412.35	PASS	AC=8;AF=1.00;AN=8;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.1213;MLEAC=8;MLEAF=1.00;MQ=59.94;MQ0=0;QD=33.83	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1448,123,0	1/1:0,45:45:99:1531,135,0	1/1:0,32:32:93:1084,93,0	1/1:0,41:41:99:1375,120,0
+1	752894	.	T	C	1966.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8434;MLEAC=8;MLEAF=1.00;MQ=30.61;MQ0=54;QD=14.05	GT:AD:DP:GQ:PL	1/1:12,25:37:63:583,63,0	1/1:9,23:32:51:459,51,0	1/1:5,23:28:45:414,45,0	1/1:8,35:43:60:536,60,0
+1	753269	.	C	G	1769.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.1663;MLEAC=8;MLEAF=1.00;MQ=28.65;MQ0=36;QD=18.82	GT:AD:DP:GQ:PL	1/1:0,14:14:24:266,24,0	1/1:0,19:19:30:341,30,0	1/1:0,28:28:45:508,45,0	1/1:0,33:33:60:680,60,0
+1	753405	.	C	A	2157.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2218;MLEAC=8;MLEAF=1.00;MQ=33.63;MQ0=14;QD=20.95	GT:AD:DP:GQ:PL	1/1:0,23:23:36:405,36,0	1/1:0,27:28:57:621,57,0	1/1:0,25:25:45:484,45,0	1/1:0,27:27:63:673,63,0
+1	753425	.	T	C	1990.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.3760;MLEAC=8;MLEAF=1.00;MQ=31.17;MQ0=22;QD=19.71	GT:AD:DP:GQ:PL	1/1:0,20:20:27:317,27,0	1/1:0,27:27:51:580,51,0	1/1:0,28:28:42:471,42,0	1/1:0,26:26:60:648,60,0
+1	753474	.	C	G	2167.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6912;MLEAC=8;MLEAF=1.00;MQ=37.21;MQ0=9;QD=26.76	GT:AD:DP:GQ:PL	1/1:0,16:16:39:445,39,0	1/1:0,21:21:51:554,51,0	1/1:0,22:23:54:604,54,0	1/1:0,21:21:51:590,51,0
+1	753849	.	G	T	644.50	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=18.77;MQ0=5;QD=14.32	GT:AD:DP:GQ:PL	1/1:0,13:13:24:217,24,0	1/1:0,9:9:12:109,12,0	1/1:0,11:11:12:103,12,0	1/1:0,12:12:27:241,27,0
+1	754182	.	A	G	2932.35	PASS	AC=8;AF=1.00;AN=8;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=8;MLEAF=1.00;MQ=54.60;MQ0=0;QD=29.32	GT:AD:DP:GQ:PL	1/1:0,24:24:69:747,69,0	1/1:0,27:27:75:763,75,0	1/1:0,21:21:57:574,57,0	1/1:0,28:28:84:874,84,0
+1	754192	.	A	G	2909.35	PASS	AC=8;AF=1.00;AN=8;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.2497;MLEAC=8;MLEAF=1.00;MQ=53.94;MQ0=0;QD=29.69	GT:AD:DP:GQ:PL	1/1:0,21:21:63:662,63,0	1/1:0,26:26:75:763,75,0	1/1:0,23:23:63:631,63,0	1/1:0,28:28:81:879,81,0
+1	754334	.	T	C	4581.35	PASS	AC=8;AF=1.00;AN=8;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.1762;MLEAC=8;MLEAF=1.00;MQ=52.11;MQ0=0;QD=29.37	GT:AD:DP:GQ:PL	1/1:0,35:36:99:1034,99,0	1/1:0,46:46:99:1325,129,0	1/1:0,34:34:99:1058,102,0	1/1:0,40:40:99:1190,120,0
+1	754503	.	G	A	4580.35	PASS	AC=8;AF=1.00;AN=8;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=8;MLEAF=1.00;MQ=58.95;MQ0=0;QD=33.19	GT:AD:DP:GQ:PL	1/1:0,31:31:90:1049,90,0	1/1:0,35:35:99:1159,102,0	1/1:0,35:35:99:1213,105,0	1/1:0,36:37:99:1185,105,0
+1	754964	.	C	T	4652.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=-1.054;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.8187;MLEAC=8;MLEAF=1.00;MQ=41.23;MQ0=0;MQRankSum=1.490;QD=32.53;ReadPosRankSum=-0.884	GT:AD:DP:GQ:PL	1/1:1,44:45:95:1373,95,0	1/1:0,32:32:96:1073,96,0	1/1:0,25:25:75:833,75,0	1/1:0,41:41:99:1399,123,0
+1	755775	.	A	G	3165.34	PASS	AC=7;AF=0.875;AN=8;BaseQRankSum=-0.487;DP=174;Dels=0.00;FS=1.116;HaplotypeScore=4.8562;MLEAC=7;MLEAF=0.875;MQ=59.23;MQ0=0;MQRankSum=2.104;QD=18.19;ReadPosRankSum=0.897	GT:AD:DP:GQ:PL	0/1:5,24:33:36:529,0,36	1/1:4,54:58:99:1148,99,0	1/1:2,43:45:36:843,36,0	1/1:2,34:38:46:677,46,0
+1	755887	.	C	G	5711.35	PASS	AC=8;AF=1.00;AN=8;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.2938;MLEAC=8;MLEAF=1.00;MQ=52.19;MQ0=0;QD=32.09	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1908,165,0	1/1:0,33:33:96:1085,96,0	1/1:0,43:44:99:1370,120,0	1/1:0,41:41:99:1374,123,0
+1	755890	.	A	T	5678.35	PASS	AC=8;AF=1.00;AN=8;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.5446;MLEAC=8;MLEAF=1.00;MQ=52.05;MQ0=0;QD=32.82	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1856,159,0	1/1:0,32:32:90:1044,90,0	1/1:0,44:44:99:1426,126,0	1/1:0,40:40:99:1378,120,0
+1	755940	.	C	T	4126.38	PASS	AC=5;AF=0.625;AN=8;BaseQRankSum=3.369;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=25.1682;MLEAC=5;MLEAF=0.625;MQ=48.33;MQ0=5;MQRankSum=8.523;QD=17.79;ReadPosRankSum=-3.312	GT:AD:DP:GQ:PL	0/1:15,39:55:4:1034,0,4	0/1:19,38:57:51:1009,0,51	0/1:23,35:58:99:895,0,229	1/1:14,48:62:25:1221,25,0
+1	756011	.	A	C	44.33	LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-2.421;DP=209;Dels=0.00;FS=26.240;HaplotypeScore=3.4770;MLEAC=1;MLEAF=0.125;MQ=56.98;MQ0=1;MQRankSum=-1.601;QD=0.66;ReadPosRankSum=-3.306	GT:AD:DP:GQ:PL	0/0:49,4:54:78:0,78,1442	0/1:47,19:67:76:76,0,1136	0/0:41,6:47:72:0,72,1238	0/0:34,6:41:44:0,44,972
+1	756040	.	G	A	50.58	LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=0.566;DP=243;Dels=0.00;FS=49.551;HaplotypeScore=6.5087;MLEAC=1;MLEAF=0.125;MQ=55.20;MQ0=1;MQRankSum=-8.273;QD=0.78;ReadPosRankSum=-1.272	GT:AD:DP:GQ:PL	0/1:55,9:65:82:82,0,1321	0/0:63,8:72:10:0,10,1615	0/0:50,9:59:29:0,29,1411	0/0:43,4:47:29:0,29,1166
+1	756042	.	G	C	145.04	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.674;DP=241;Dels=0.00;FS=21.696;HaplotypeScore=6.1258;MLEAC=3;MLEAF=0.375;MQ=55.15;MQ0=1;MQRankSum=-7.535;QD=0.79;ReadPosRankSum=-1.510	GT:AD:DP:GQ:PL	0/1:51,14:65:99:128,0,1154	0/1:58,13:71:14:14,0,1345	0/0:45,13:58:8:0,8,1217	0/1:38,9:47:36:36,0,917
+1	756063	.	A	C	338.94	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.270;DP=260;Dels=0.00;FS=4.121;HaplotypeScore=16.9840;MLEAC=4;MLEAF=0.500;MQ=54.20;MQ0=4;MQRankSum=-6.688;QD=1.30;ReadPosRankSum=2.906	GT:AD:DP:GQ:PL	0/1:54,21:75:99:109,0,1405	0/1:49,22:72:99:127,0,1291	0/1:41,16:57:39:39,0,1183	0/1:37,19:56:96:96,0,922
+1	756250	.	G	A	117.52	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.590;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.4198;MLEAC=3;MLEAF=0.375;MQ=52.95;MQ0=2;MQRankSum=-6.950;QD=0.71;ReadPosRankSum=-4.042	GT:AD:DP:GQ:PL	0/1:49,7:56:34:34,0,1235	0/1:61,7:68:1:1,0,1641	0/1:34,8:42:99:114,0,818	0/0:46,7:53:19:0,19,1175
+1	756257	.	A	C	253.08	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.318;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=10.5557;MLEAC=3;MLEAF=0.375;MQ=51.83;MQ0=2;MQRankSum=-6.174;QD=1.58;ReadPosRankSum=-1.020	GT:AD:DP:GQ:PL	0/1:40,16:56:99:128,0,990	0/1:53,9:62:37:37,0,1314	0/1:32,9:42:99:122,0,767	0/0:46,9:56:16:0,16,1212
+1	756259	.	G	A	255.93	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=-0.432;DP=217;Dels=0.00;FS=1.445;HaplotypeScore=13.6878;MLEAC=4;MLEAF=0.500;MQ=51.51;MQ0=2;MQRankSum=-4.892;QD=1.58;ReadPosRankSum=-2.826	GT:AD:DP:GQ:PL	0/1:47,8:55:62:62,0,1262	0/1:53,10:63:64:64,0,1344	0/1:34,10:44:99:161,0,857	0/0:47,8:55:2:0,2,1108
+1	756267	.	T	G	45.64	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-7.485;DP=314;Dels=0.00;FS=8.064;HaplotypeScore=33.8445;MLEAC=2;MLEAF=0.250;MQ=51.30;MQ0=5;MQRankSum=-6.915;QD=0.32;ReadPosRankSum=0.812	GT:AD:DP:GQ:PL	0/0:75,10:85:21:0,21,2011	0/0:77,8:85:80:0,80,2133	0/1:56,8:64:10:10,0,1351	0/1:69,11:80:69:69,0,1610
+1	756268	.	G	A	4618.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.444;DP=313;Dels=0.00;FS=28.118;HaplotypeScore=31.3386;MLEAC=4;MLEAF=0.500;MQ=51.09;MQ0=5;MQRankSum=-2.270;QD=14.76;ReadPosRankSum=9.250	GT:AD:DP:GQ:PL	0/1:30,55:85:99:1329,0,591	0/1:29,52:86:99:1285,0,489	0/1:24,39:65:99:815,0,457	0/1:20,52:77:99:1222,0,333
+1	756277	.	G	T	2219.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.021;DP=415;Dels=0.00;FS=0.000;HaplotypeScore=45.0358;MLEAC=4;MLEAF=0.500;MQ=47.66;MQ0=11;MQRankSum=-10.049;QD=5.35;ReadPosRankSum=-6.449	GT:AD:DP:GQ:PL	0/1:88,33:122:99:661,0,2086	0/1:78,30:109:99:483,0,1963	0/1:51,26:78:99:448,0,1242	0/1:63,38:105:99:660,0,1422
+1	756334	.	C	T	3001.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.927;DP=339;Dels=0.00;FS=12.334;HaplotypeScore=5.7595;MLEAC=4;MLEAF=0.500;MQ=48.41;MQ0=2;MQRankSum=-11.613;QD=8.86;ReadPosRankSum=4.964	GT:AD:DP:GQ:PL	0/1:66,36:104:99:758,0,1645	0/1:50,41:91:99:955,0,1201	0/1:36,25:61:99:575,0,995	0/1:49,34:83:99:746,0,1272
+1	756347	.	C	G	252.94	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.502;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=5.5267;MLEAC=4;MLEAF=0.500;MQ=51.74;MQ0=0;MQRankSum=-8.261;QD=1.03;ReadPosRankSum=4.227	GT:AD:DP:GQ:PL	0/1:69,13:82:38:38,0,2003	0/1:47,15:62:99:127,0,1206	0/1:39,8:47:46:46,0,1175	0/1:45,9:54:74:74,0,1226
+1	756348	.	A	C	387.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.827;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=5.2775;MLEAC=4;MLEAF=0.500;MQ=51.83;MQ0=0;MQRankSum=-7.758;QD=1.62;ReadPosRankSum=3.911	GT:AD:DP:GQ:PL	0/1:67,14:81:99:132,0,1671	0/1:46,13:59:99:136,0,1196	0/1:39,7:46:63:63,0,1150	0/1:43,11:54:89:89,0,1122
+1	756349	.	A	C	413.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.678;DP=238;Dels=0.00;FS=1.291;HaplotypeScore=5.4477;MLEAC=4;MLEAF=0.500;MQ=51.89;MQ0=0;MQRankSum=-8.014;QD=1.74;ReadPosRankSum=4.203	GT:AD:DP:GQ:PL	0/1:67,14:81:99:135,0,1696	0/1:44,13:57:99:144,0,1108	0/1:37,9:46:80:80,0,1066	0/1:45,9:54:87:87,0,1134
+1	756352	.	C	T	153.12	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-4.116;DP=245;Dels=0.00;FS=2.716;HaplotypeScore=6.0658;MLEAC=3;MLEAF=0.375;MQ=50.71;MQ0=0;MQRankSum=-6.976;QD=0.83;ReadPosRankSum=3.559	GT:AD:DP:GQ:PL	0/1:71,11:82:13:13,0,2123	0/1:45,12:57:99:103,0,1238	0/1:39,7:46:71:71,0,1127	0/0:54,6:60:38:0,38,1540
+1	756361	.	C	A	147.45	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.440;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=3.9341;MLEAC=4;MLEAF=0.500;MQ=50.63;MQ0=1;MQRankSum=-7.325;QD=0.75;ReadPosRankSum=0.663	GT:AD:DP:GQ:PL	0/1:76,12:88:9:9,0,2181	0/1:50,13:63:99:99,0,1334	0/1:39,7:46:69:69,0,1128	0/0:49,7:56:0:0,0,1411
+1	756364	.	G	A	159.91	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.041;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=4.6359;MLEAC=3;MLEAF=0.375;MQ=50.72;MQ0=1;MQRankSum=-7.493;QD=0.81;ReadPosRankSum=-0.375	GT:AD:DP:GQ:PL	0/1:76,13:89:33:33,0,2255	0/1:50,13:63:97:97,0,1268	0/1:39,7:46:64:64,0,1159	0/0:49,6:56:35:0,35,1496
+1	756373	.	A	G	67.95	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.392;DP=249;Dels=0.00;FS=0.000;HaplotypeScore=15.2694;MLEAC=3;MLEAF=0.375;MQ=50.42;MQ0=1;MQRankSum=-7.102;QD=0.34;ReadPosRankSum=-3.513	GT:AD:DP:GQ:PL	0/1:64,11:78:28:28,0,1893	0/1:57,12:70:64:64,0,1371	0/1:44,6:50:8:8,0,1144	0/0:44,5:51:6:0,6,1175
+1	756378	.	G	C	296.95	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.929;DP=245;Dels=0.00;FS=0.000;HaplotypeScore=18.4817;MLEAC=4;MLEAF=0.500;MQ=50.49;MQ0=1;MQRankSum=-8.765;QD=1.21;ReadPosRankSum=-4.465	GT:AD:DP:GQ:PL	0/1:60,12:72:31:31,0,1632	0/1:50,20:70:99:174,0,1174	0/1:40,10:50:74:74,0,1100	0/1:41,12:53:50:50,0,824
+1	756380	.	T	A	5312.95	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.796;DP=244;Dels=0.00;FS=1.268;HaplotypeScore=23.1633;MLEAC=4;MLEAF=0.500;MQ=50.49;MQ0=1;MQRankSum=9.413;QD=21.77;ReadPosRankSum=4.182	GT:AD:DP:GQ:PL	0/1:12,59:71:39:1758,0,39	0/1:20,51:72:99:1309,0,149	0/1:9,41:50:74:1189,0,74	0/1:7,43:50:29:1089,0,29
+1	756430	.	A	C	51.90	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-3.951;DP=234;Dels=0.00;FS=33.754;HaplotypeScore=12.0221;MLEAC=2;MLEAF=0.250;MQ=53.54;MQ0=1;MQRankSum=-5.236;QD=0.44;ReadPosRankSum=0.264	GT:AD:DP:GQ:PL	0/0:56,10:66:77:0,77,1703	0/1:47,16:63:40:40,0,1152	0/0:41,8:49:48:0,48,1121	0/1:43,12:56:46:46,0,1083
+1	756604	.	A	G	5476.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=2.034;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.4679;MLEAC=8;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.785;QD=26.08;ReadPosRankSum=1.192	GT:AD:DP:GQ:PL	1/1:2,75:79:99:2052,183,0	1/1:0,44:44:99:1222,120,0	1/1:0,39:39:99:1078,105,0	1/1:0,47:48:99:1150,114,0
+1	757640	.	G	A	6146.35	PASS	AC=8;AF=1.00;AN=8;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=3.7112;MLEAC=8;MLEAF=1.00;MQ=59.88;MQ0=0;QD=31.04	GT:AD:DP:GQ:PL	1/1:0,54:59:99:1698,150,0	1/1:0,54:55:99:1713,156,0	1/1:0,35:35:99:1158,102,0	1/1:0,49:49:99:1603,144,0
+1	757734	.	C	T	5932.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=2.141;DP=194;Dels=0.00;FS=6.239;HaplotypeScore=3.0101;MLEAC=8;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.331;QD=30.58;ReadPosRankSum=-0.019	GT:AD:DP:GQ:PL	1/1:5,55:60:99:1665,111,0	1/1:0,52:52:99:1667,150,0	1/1:0,42:42:99:1354,123,0	1/1:0,40:40:99:1272,114,0
+1	757842	.	G	C	940.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.564;DP=132;Dels=0.00;FS=14.006;HaplotypeScore=8.1450;MLEAC=4;MLEAF=0.500;MQ=53.41;MQ0=3;MQRankSum=0.038;QD=7.13;ReadPosRankSum=-1.846	GT:AD:DP:GQ:PL	0/1:18,13:32:99:235,0,472	0/1:24,12:36:99:206,0,645	0/1:18,13:31:99:265,0,535	0/1:18,15:33:99:267,0,371
+1	757843	.	C	A	1361.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.856;DP=133;Dels=0.00;FS=13.310;HaplotypeScore=8.3939;MLEAC=4;MLEAF=0.500;MQ=53.35;MQ0=3;MQRankSum=0.352;QD=10.24;ReadPosRankSum=1.134	GT:AD:DP:GQ:PL	0/1:19,13:32:99:305,0,358	0/1:17,20:37:99:416,0,256	0/1:17,15:32:99:403,0,352	0/1:19,13:32:99:270,0,399
+1	757869	.	T	C	199.01	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=2.735;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=4;MLEAF=0.500;MQ=54.23;MQ0=3;MQRankSum=-4.241;QD=1.44;ReadPosRankSum=-4.684	GT:AD:DP:GQ:PL	0/1:33,4:37:54:54,0,815	0/1:30,7:37:81:81,0,763	0/1:27,6:33:80:80,0,649	0/1:25,6:31:16:16,0,525
+1	757936	.	C	A	5912.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=2.451;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.6945;MLEAC=8;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.166;QD=29.41;ReadPosRankSum=0.711	GT:AD:DP:GQ:PL	1/1:3,56:59:99:1591,113,0	1/1:1,51:52:99:1554,141,0	1/1:0,41:42:99:1280,114,0	1/1:1,46:47:99:1513,135,0
+1	758093	.	T	C	66.33	LowQD	AC=1;AF=0.125;AN=8;BaseQRankSum=-6.274;DP=234;Dels=0.00;FS=1.210;HaplotypeScore=3.0517;MLEAC=1;MLEAF=0.125;MQ=59.25;MQ0=0;MQRankSum=-2.696;QD=0.98;ReadPosRankSum=-2.008	GT:AD:DP:GQ:PL	0/1:49,19:68:98:98,0,1399	0/0:61,7:68:99:0,126,1552	0/0:47,2:49:99:0,129,1454	0/0:44,5:49:93:0,93,1212
+1	758144	.	A	G	6668.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=0.805;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=4.5709;MLEAC=8;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=3.814;QD=31.91;ReadPosRankSum=-0.296	GT:AD:DP:GQ:PL	1/1:4,56:60:99:1801,112,0	1/1:1,61:62:99:1959,177,0	1/1:0,45:45:99:1503,135,0	1/1:0,42:42:99:1431,126,0
+1	758324	.	T	C	6445.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.698;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=2.2503;MLEAC=8;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.370;QD=32.07;ReadPosRankSum=0.698	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2029,180,0	1/1:0,47:47:99:1494,138,0	1/1:0,43:43:99:1406,126,0	1/1:1,48:49:99:1542,141,0
+1	758626	.	C	T	6270.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=2.324;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=7.9293;MLEAC=8;MLEAF=1.00;MQ=58.49;MQ0=1;MQRankSum=1.735;QD=31.35;ReadPosRankSum=-1.660	GT:AD:DP:GQ:PL	1/1:0,63:64:99:2009,177,0	1/1:0,54:54:99:1717,153,0	1/1:2,38:40:99:1277,114,0	1/1:1,41:42:99:1293,114,0
+1	759700	.	T	C	883.42	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=26.16;MQ0=12;QD=18.80	GT:AD:DP:GQ:PL	1/1:0,12:12:30:335,30,0	1/1:0,13:13:15:149,15,0	1/1:0,10:10:18:195,18,0	1/1:0,12:12:21:230,21,0
+1	759837	.	T	A	2367.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4446;MLEAC=8;MLEAF=1.00;MQ=40.36;MQ0=11;QD=26.90	GT:AD:DP:GQ:PL	1/1:0,16:16:39:428,39,0	1/1:0,30:30:72:779,72,0	1/1:0,19:19:51:578,51,0	1/1:0,23:23:57:608,57,0
+1	760912	.	C	T	5179.35	PASS	AC=8;AF=1.00;AN=8;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=51.44;MQ0=0;QD=32.99	GT:AD:DP:GQ:PL	1/1:0,33:33:87:1003,87,0	1/1:0,36:36:99:1210,105,0	1/1:0,46:46:99:1587,138,0	1/1:0,42:42:99:1405,123,0
+1	761147	.	T	C	5791.35	PASS	AC=8;AF=1.00;AN=8;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.8662;MLEAC=8;MLEAF=1.00;MQ=57.58;MQ0=0;QD=34.27	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1149,99,0	1/1:0,47:47:99:1620,141,0	1/1:0,42:42:99:1427,126,0	1/1:0,47:47:99:1621,141,0
+1	761732	.	C	T	1995.35	PASS	AC=8;AF=1.00;AN=8;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.5973;MLEAC=8;MLEAF=1.00;MQ=40.71;MQ0=3;QD=28.51	GT:AD:DP:GQ:PL	1/1:0,18:18:39:431,39,0	1/1:0,15:15:42:462,42,0	1/1:0,14:14:42:481,42,0	1/1:0,23:23:57:647,57,0
+1	761752	.	C	T	1261.36	PASS	AC=8;AF=1.00;AN=8;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=34.90;MQ0=5;QD=25.23	GT:AD:DP:GQ:PL	1/1:0,16:16:27:291,27,0	1/1:0,11:11:30:323,30,0	1/1:0,10:10:30:333,30,0	1/1:0,13:13:30:340,30,0
+1	761800	.	A	T	630.55	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=21.77;MQ0=7;QD=19.11	GT:AD:DP:GQ:PL	1/1:0,8:8:15:158,15,0	1/1:0,9:9:21:221,21,0	1/1:0,5:5:9:89,9,0	1/1:0,11:11:18:188,18,0
+1	761811	.	G	A	954.46	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7481;MLEAC=8;MLEAF=1.00;MQ=27.06;MQ0=7;QD=22.20	GT:AD:DP:GQ:PL	1/1:0,8:8:15:158,15,0	1/1:0,13:13:33:367,33,0	1/1:0,6:6:12:134,12,0	1/1:0,16:16:30:321,30,0
+1	762273	.	G	A	1972.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=31.44;MQ0=8;QD=26.30	GT:AD:DP:GQ:PL	1/1:0,25:25:69:774,69,0	1/1:0,15:15:36:385,36,0	1/1:0,18:18:42:457,42,0	1/1:0,17:17:36:382,36,0
+1	762589	.	G	C	2601.35	PASS	AC=8;AF=1.00;AN=8;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.4972;MLEAC=8;MLEAF=1.00;MQ=38.85;MQ0=2;QD=26.01	GT:AD:DP:GQ:PL	1/1:0,26:27:66:688,66,0	1/1:0,31:31:81:815,81,0	1/1:1,20:21:48:510,48,0	1/1:0,21:21:60:614,60,0
+1	762592	.	C	G	2596.35	PASS	AC=8;AF=1.00;AN=8;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8585;MLEAC=8;MLEAF=1.00;MQ=38.33;MQ0=4;QD=25.71	GT:AD:DP:GQ:PL	1/1:0,27:27:72:728,72,0	1/1:1,31:32:87:857,87,0	1/1:2,20:22:48:472,48,0	1/1:0,20:20:57:565,57,0
+1	762601	.	T	C	3087.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.698;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5417;MLEAC=8;MLEAF=1.00;MQ=38.19;MQ0=4;MQRankSum=0.978;QD=29.13;ReadPosRankSum=-0.257	GT:AD:DP:GQ:PL	1/1:1,27:28:81:877,81,0	1/1:1,32:33:87:941,87,0	1/1:2,20:22:51:565,51,0	1/1:0,23:23:66:730,66,0
+1	762632	.	T	A	3420.35	PASS	AC=8;AF=1.00;AN=8;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.1522;MLEAC=8;MLEAF=1.00;MQ=37.88;MQ0=4;QD=30.81	GT:AD:DP:GQ:PL	1/1:0,29:29:84:920,84,0	1/1:1,34:35:96:1068,96,0	1/1:2,18:20:51:583,51,0	1/1:0,26:26:78:875,78,0
+1	763394	.	G	A	903.09	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.420;DP=83;Dels=0.00;FS=10.360;HaplotypeScore=0.2892;MLEAC=4;MLEAF=0.500;MQ=21.72;MQ0=33;MQRankSum=0.261;QD=10.88;ReadPosRankSum=0.352	GT:AD:DP:GQ:PL	0/1:13,6:19:35:35,0,154	0/1:8,17:25:41:356,0,41	0/1:8,15:23:0:253,0,0	0/1:3,13:16:20:289,0,20
+1	766105	.	T	A	2488.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.5567;MLEAC=8;MLEAF=1.00;MQ=28.77;MQ0=59;QD=18.16	GT:AD:DP:GQ:PL	1/1:4,34:38:84:959,84,0	1/1:7,24:31:51:563,51,0	1/1:9,25:34:45:517,45,0	1/1:13,21:34:42:475,42,0
+1	767780	.	G	A	4340.35	PASS	AC=8;AF=1.00;AN=8;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9388;MLEAC=8;MLEAF=1.00;MQ=40.13;MQ0=1;QD=31.45	GT:AD:DP:GQ:PL	1/1:0,34:34:87:974,87,0	1/1:0,38:38:99:1170,108,0	1/1:0,38:38:99:1303,114,0	1/1:0,28:28:84:919,84,0
+1	768253	.	A	C	3854.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=-0.028;DP=130;Dels=0.00;FS=3.160;HaplotypeScore=0.4623;MLEAC=8;MLEAF=1.00;MQ=46.85;MQ0=6;MQRankSum=0.251;QD=29.65;ReadPosRankSum=0.810	GT:AD:DP:GQ:PL	1/1:1,29:30:47:865,47,0	1/1:0,36:36:96:1078,96,0	1/1:3,26:29:75:827,75,0	1/1:0,35:35:99:1110,102,0
+1	769829	.	C	A	3935.35	PASS	AC=8;AF=1.00;AN=8;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.6301;MLEAC=8;MLEAF=1.00;MQ=44.23;MQ0=3;QD=30.99	GT:AD:DP:GQ:PL	1/1:0,33:33:84:943,84,0	1/1:0,28:28:81:882,81,0	1/1:0,35:35:99:1199,105,0	1/1:0,30:31:84:937,84,0
+1	770075	.	C	T	2648.35	PASS	AC=8;AF=1.00;AN=8;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=34.25;MQ0=9;QD=27.30	GT:AD:DP:GQ:PL	1/1:0,29:29:69:782,69,0	1/1:0,24:24:60:644,60,0	1/1:0,26:26:72:785,72,0	1/1:0,18:18:42:463,42,0
+1	770568	.	A	G	1024.37	PASS	AC=8;AF=1.00;AN=8;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.0430;MLEAC=8;MLEAF=1.00;MQ=34.61;MQ0=4;QD=24.39	GT:AD:DP:GQ:PL	1/1:0,13:13:24:245,24,0	1/1:0,8:8:21:223,21,0	1/1:0,12:12:30:329,30,0	1/1:0,9:9:24:253,24,0
+1	770918	.	T	G	822.39	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=23.73;MQ0=13;QD=18.69	GT:AD:DP:GQ:PL	1/1:0,11:11:18:174,18,0	1/1:0,13:13:24:237,24,0	1/1:0,8:8:21:235,21,0	1/1:0,12:12:21:202,21,0
+1	771410	.	C	T	2794.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=-0.375;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=8;MLEAF=1.00;MQ=25.78;MQ0=71;MQRankSum=0.661;QD=16.53;ReadPosRankSum=0.339	GT:AD:DP:GQ:PL	1/1:12,29:41:54:580,54,0	1/1:5,34:39:87:930,87,0	1/1:11,32:43:41:732,41,0	1/1:14,31:46:54:578,54,0
+1	771823	.	T	C	3212.34	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.1246;MLEAC=8;MLEAF=1.00;MQ=34.48;MQ0=17;QD=22.15	GT:AD:DP:GQ:PL	1/1:0,34:34:69:772,69,0	1/1:0,45:45:87:938,87,0	1/1:0,32:32:72:757,72,0	1/1:0,34:34:72:771,72,0
+1	772755	.	A	C	2977.35	PASS	AC=8;AF=1.00;AN=8;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=8;MLEAF=1.00;MQ=54.39;MQ0=0;QD=30.69	GT:AD:DP:GQ:PL	1/1:0,23:23:69:722,69,0	1/1:0,24:24:72:723,72,0	1/1:0,23:23:69:746,69,0	1/1:0,27:27:75:812,75,0
+1	774736	.	A	C	4662.35	PASS	AC=8;AF=1.00;AN=8;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.9516;MLEAC=8;MLEAF=1.00;MQ=47.68;MQ0=2;QD=29.32	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1319,120,0	1/1:0,44:44:99:1252,114,0	1/1:0,38:38:99:1084,99,0	1/1:0,37:37:93:1033,93,0
+1	774785	.	G	A	3679.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=-1.603;DP=137;Dels=0.00;FS=3.278;HaplotypeScore=6.6404;MLEAC=8;MLEAF=1.00;MQ=40.88;MQ0=2;MQRankSum=0.646;QD=26.86;ReadPosRankSum=0.259	GT:AD:DP:GQ:PL	1/1:0,28:28:78:840,78,0	1/1:0,40:40:99:1151,102,0	1/1:1,40:41:62:1029,62,0	1/1:0,27:27:63:685,63,0
+1	774874	.	A	C	1572.57	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.620;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2304;MLEAC=8;MLEAF=1.00;MQ=31.30;MQ0=2;MQRankSum=1.874;QD=23.47;ReadPosRankSum=1.715	GT:AD:DP:GQ:PL	1/1:1,15:16:42:463,42,0	1/1:1,22:23:54:558,54,0	1/1:1,12:14:7:264,7,0	1/1:0,14:14:30:313,30,0
+1	774883	.	G	A	1185.18	PASS	AC=6;AF=0.750;AN=8;BaseQRankSum=1.498;DP=69;Dels=0.00;FS=1.126;HaplotypeScore=3.0137;MLEAC=6;MLEAF=0.750;MQ=34.67;MQ0=2;MQRankSum=-1.153;QD=17.18;ReadPosRankSum=3.223	GT:AD:DP:GQ:PL	1/1:2,13:16:5:362,5,0	1/1:2,17:19:18:405,18,0	0/1:5,10:15:83:225,0,83	0/1:5,14:19:35:226,0,35
+1	774900	.	C	G	426.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.944;DP=68;Dels=0.00;FS=2.097;HaplotypeScore=3.3988;MLEAC=4;MLEAF=0.500;MQ=35.27;MQ0=1;MQRankSum=-2.122;QD=6.28;ReadPosRankSum=-1.239	GT:AD:DP:GQ:PL	0/1:14,5:19:71:71,0,113	0/1:5,10:16:89:210,0,89	0/1:9,6:15:99:128,0,200	0/1:12,6:18:50:50,0,255
+1	774923	.	G	C	1814.35	PASS	AC=8;AF=1.00;AN=8;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.1275;MLEAC=8;MLEAF=1.00;MQ=40.68;MQ0=1;QD=26.68	GT:AD:DP:GQ:PL	1/1:0,16:16:45:472,45,0	1/1:0,17:17:45:458,45,0	1/1:0,14:14:39:394,39,0	1/1:0,21:21:48:516,48,0
+1	774942	.	G	C	40.94	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-2.949;DP=107;Dels=0.00;FS=15.456;HaplotypeScore=5.1172;MLEAC=2;MLEAF=0.250;MQ=44.89;MQ0=1;MQRankSum=-3.177;QD=0.74;ReadPosRankSum=0.059	GT:AD:DP:GQ:PL	0/1:18,8:27:46:46,0,354	0/0:21,5:26:0:0,0,398	0/0:23,3:26:26:0,26,478	0/1:21,7:28:26:26,0,431
+1	774953	.	G	A	30.34	LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=-3.381;DP=130;Dels=0.00;FS=19.675;HaplotypeScore=4.4426;MLEAC=1;MLEAF=0.125;MQ=47.25;MQ0=1;MQRankSum=3.652;QD=0.87;ReadPosRankSum=-2.798	GT:AD:DP:GQ:PL	0/1:27,7:35:62:62,0,541	0/0:24,5:29:54:0,54,548	0/0:29,1:30:81:0,81,841	0/0:35,1:36:48:0,48,736
+1	775426	.	G	A	3461.35	PASS	AC=8;AF=1.00;AN=8;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.3526;MLEAC=8;MLEAF=1.00;MQ=38.48;MQ0=0;QD=30.63	GT:AD:DP:GQ:PL	1/1:0,30:30:81:883,81,0	1/1:0,25:25:69:754,69,0	1/1:0,36:36:99:1130,102,0	1/1:0,22:22:66:720,66,0
+1	775659	.	A	G	3132.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.697;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.4251;MLEAC=8;MLEAF=1.00;MQ=44.46;MQ0=10;MQRankSum=-0.554;QD=28.48;ReadPosRankSum=-0.069	GT:AD:DP:GQ:PL	1/1:0,26:26:72:800,72,0	1/1:1,30:31:75:823,75,0	1/1:0,25:25:66:746,66,0	1/1:0,28:28:72:789,72,0
+1	777122	.	A	T	4157.35	PASS	AC=8;AF=1.00;AN=8;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.2080;MLEAC=8;MLEAF=1.00;MQ=54.10;MQ0=0;QD=33.26	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1041,90,0	1/1:0,31:31:93:1056,93,0	1/1:0,28:28:84:965,84,0	1/1:0,33:34:99:1121,99,0
+1	778569	.	A	G	4524.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.711;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.2756;MLEAC=8;MLEAF=1.00;MQ=43.12;MQ0=3;MQRankSum=-0.414;QD=27.26;ReadPosRankSum=0.096	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1276,120,0	1/1:0,39:39:99:1122,108,0	1/1:0,49:49:99:1468,132,0	1/1:1,27:28:66:684,66,0
+1	780027	.	G	T	5389.35	PASS	AC=8;AF=1.00;AN=8;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.0997;MLEAC=8;MLEAF=1.00;MQ=59.04;MQ0=0;QD=33.68	GT:AD:DP:GQ:PL	1/1:0,32:32:90:1054,90,0	1/1:0,47:47:99:1603,138,0	1/1:0,37:37:99:1307,111,0	1/1:0,43:43:99:1451,126,0
+1	780785	.	T	A	4637.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.8405;MLEAC=8;MLEAF=1.00;MQ=50.86;MQ0=1;MQRankSum=-0.625;QD=31.98;ReadPosRankSum=0.914	GT:AD:DP:GQ:PL	1/1:0,28:28:81:913,81,0	1/1:1,38:39:99:1242,111,0	1/1:0,37:37:99:1228,108,0	1/1:1,40:41:99:1280,114,0
+1	783304	.	T	C	4368.35	PASS	AC=8;AF=1.00;AN=8;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.6338;MLEAC=8;MLEAF=1.00;MQ=38.54;MQ0=2;QD=32.36	GT:AD:DP:GQ:PL	1/1:0,27:27:75:851,75,0	1/1:0,34:34:93:1035,93,0	1/1:0,38:38:99:1299,114,0	1/1:0,36:36:99:1209,108,0
+1	785050	.	G	A	4332.35	PASS	AC=8;AF=1.00;AN=8;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.4686;MLEAC=8;MLEAF=1.00;MQ=58.86;MQ0=0;QD=33.85	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1134,99,0	1/1:0,31:31:90:1023,90,0	1/1:0,26:26:78:894,78,0	1/1:0,38:38:99:1307,114,0
+1	785989	.	T	C	3348.35	PASS	AC=8;AF=1.00;AN=8;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.0061;MLEAC=8;MLEAF=1.00;MQ=55.99;MQ0=0;QD=32.51	GT:AD:DP:GQ:PL	1/1:0,13:13:39:442,39,0	1/1:0,30:30:87:966,87,0	1/1:0,31:31:93:1045,93,0	1/1:0,29:29:81:921,81,0
+1	786247	.	G	A	1240.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=0.000;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=8;MLEAF=1.00;MQ=29.62;MQ0=15;MQRankSum=1.575;QD=21.02;ReadPosRankSum=0.551	GT:AD:DP:GQ:PL	1/1:3,13:16:27:270,27,0	1/1:2,11:13:30:310,30,0	1/1:2,14:16:36:393,36,0	1/1:2,12:14:30:293,30,0
+1	786810	.	G	A	369.75	HARD_TO_VALIDATE	AC=6;AF=1.00;AN=6;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=6;MLEAF=1.00;MQ=25.05;MQ0=10;QD=16.08	GT:AD:DP:GQ:PL	./.	1/1:0,5:5:9:100,9,0	1/1:0,12:12:18:202,18,0	1/1:0,6:6:9:93,9,0
+1	787019	.	C	T	512.96	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=27.82;MQ0=11;QD=17.10	GT:AD:DP:GQ:PL	1/1:0,6:6:6:70,6,0	1/1:0,9:9:15:178,15,0	1/1:0,4:4:6:70,6,0	1/1:0,11:11:18:220,18,0
+1	787070	.	A	G	530.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.783;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.3681;MLEAC=4;MLEAF=0.500;MQ=33.15;MQ0=7;MQRankSum=-0.686;QD=10.02;ReadPosRankSum=-1.317	GT:AD:DP:GQ:PL	0/1:5,4:9:79:96,0,79	0/1:6,7:13:97:167,0,97	0/1:5,8:13:82:88,0,82	0/1:7,11:18:99:212,0,126
+1	787135	.	A	G	1560.36	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.3943;MLEAC=8;MLEAF=1.00;MQ=31.66;MQ0=7;QD=24.77	GT:AD:DP:GQ:PL	1/1:0,13:13:27:309,27,0	1/1:0,18:18:39:446,39,0	1/1:0,16:16:36:399,36,0	1/1:0,16:16:39:432,39,0
+1	787185	.	G	A	1075.38	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.3670;MLEAC=8;MLEAF=1.00;MQ=27.61;MQ0=10;QD=19.55	GT:AD:DP:GQ:PL	1/1:0,20:20:39:427,39,0	1/1:0,13:13:21:233,21,0	1/1:0,9:9:18:199,18,0	1/1:0,12:13:24:242,24,0
+1	787205	.	G	A	1339.37	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.2489;MLEAC=8;MLEAF=1.00;MQ=29.34;MQ0=10;QD=22.32	GT:AD:DP:GQ:PL	1/1:0,21:21:42:468,42,0	1/1:0,13:13:30:323,30,0	1/1:0,11:11:18:202,18,0	1/1:0,15:15:36:372,36,0
+1	787262	.	C	G	2584.35	PASS	AC=8;AF=1.00;AN=8;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=8;MLEAF=1.00;MQ=42.39;MQ0=5;QD=28.09	GT:AD:DP:GQ:PL	1/1:0,22:22:66:738,66,0	1/1:0,21:21:51:560,51,0	1/1:0,26:26:60:671,60,0	1/1:0,23:23:57:641,57,0
+1	787399	.	G	T	3114.35	PASS	AC=8;AF=1.00;AN=8;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9305;MLEAC=8;MLEAF=1.00;MQ=50.85;MQ0=0;QD=31.14	GT:AD:DP:GQ:PL	1/1:0,21:21:60:686,60,0	1/1:0,27:27:72:810,72,0	1/1:0,19:19:54:626,54,0	1/1:0,33:33:90:1018,90,0
+1	787685	.	G	T	4651.35	PASS	AC=8;AF=1.00;AN=8;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.4084;MLEAC=8;MLEAF=1.00;MQ=46.47;MQ0=0;QD=32.08	GT:AD:DP:GQ:PL	1/1:0,34:34:93:1064,93,0	1/1:0,31:31:90:983,90,0	1/1:0,42:42:99:1421,126,0	1/1:0,37:38:99:1209,108,0
+1	787844	.	C	T	4315.35	PASS	AC=8;AF=1.00;AN=8;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.4987;MLEAC=8;MLEAF=1.00;MQ=39.47;MQ0=4;QD=31.05	GT:AD:DP:GQ:PL	1/1:0,33:33:90:1014,90,0	1/1:0,33:33:87:976,87,0	1/1:0,34:34:99:1150,102,0	1/1:0,38:38:99:1201,108,0
+1	788713	.	T	C	2504.35	PASS	AC=8;AF=1.00;AN=8;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.1972;MLEAC=8;MLEAF=1.00;MQ=38.89;MQ0=4;QD=28.79	GT:AD:DP:GQ:PL	1/1:0,18:18:42:480,42,0	1/1:0,24:24:60:672,60,0	1/1:0,22:22:57:650,57,0	1/1:0,23:23:66:728,66,0
+1	788840	.	T	C	288.58	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.252;DP=138;Dels=0.00;FS=15.595;HaplotypeScore=3.0085;MLEAC=4;MLEAF=0.500;MQ=30.24;MQ0=23;MQRankSum=-3.153;QD=2.09;ReadPosRankSum=1.113	GT:AD:DP:GQ:PL	0/1:16,14:33:99:169,0,184	0/1:19,20:39:99:108,0,385	0/1:19,17:37:6:6,0,417	0/1:17,11:29:37:37,0,254
+1	788844	.	C	G	380.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.837;DP=143;Dels=0.00;FS=21.049;HaplotypeScore=3.0085;MLEAC=4;MLEAF=0.500;MQ=30.26;MQ0=23;MQRankSum=-2.077;QD=2.66;ReadPosRankSum=-0.532	GT:AD:DP:GQ:PL	0/1:22,11:34:99:196,0,336	0/1:28,12:40:93:93,0,512	0/1:23,16:39:44:44,0,446	0/1:20,10:30:80:80,0,289
+1	789099	.	G	A	922.84	HARD_TO_VALIDATE	AC=7;AF=0.875;AN=8;BaseQRankSum=3.014;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7110;MLEAC=7;MLEAF=0.875;MQ=27.39;MQ0=12;MQRankSum=0.843;QD=15.13;ReadPosRankSum=0.586	GT:AD:DP:GQ:PL	1/1:3,12:15:1:282,1,0	1/1:2,17:19:36:379,36,0	0/1:7,10:17:41:57,0,41	1/1:2,8:10:5:234,5,0
+1	789141	.	G	C	884.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.166;DP=166;Dels=0.00;FS=3.137;HaplotypeScore=1.1444;MLEAC=4;MLEAF=0.500;MQ=30.28;MQ0=29;MQRankSum=3.597;QD=5.33;ReadPosRankSum=-2.691	GT:AD:DP:GQ:PL	0/1:29,17:46:99:379,0,448	0/1:34,7:41:58:58,0,603	0/1:26,16:42:99:287,0,362	0/1:28,9:37:99:193,0,476
+1	789242	.	C	G	49.90	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-3.508;DP=124;Dels=0.00;FS=35.198;HaplotypeScore=4.8477;MLEAC=2;MLEAF=0.250;MQ=39.09;MQ0=7;MQRankSum=0.076;QD=0.86;ReadPosRankSum=-4.272	GT:AD:DP:GQ:PL	0/1:26,5:31:40:40,0,420	0/0:37,1:38:60:0,60,865	0/0:27,1:28:57:0,57,617	0/1:21,6:27:44:44,0,293
+1	789256	.	T	C	2491.35	PASS	AC=8;AF=1.00;AN=8;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.0106;MLEAC=8;MLEAF=1.00;MQ=41.37;MQ0=5;QD=20.94	GT:AD:DP:GQ:PL	1/1:0,30:30:63:613,63,0	1/1:0,37:37:87:862,87,0	1/1:0,30:31:63:652,63,0	1/1:0,21:21:39:390,39,0
+1	789465	.	C	T	1960.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.886;DP=172;Dels=0.00;FS=0.604;HaplotypeScore=0.4138;MLEAC=4;MLEAF=0.500;MQ=32.48;MQ0=23;MQRankSum=-1.166;QD=11.40;ReadPosRankSum=-1.078	GT:AD:DP:GQ:PL	0/1:17,23:40:99:571,0,302	0/1:26,27:53:99:542,0,431	0/1:24,19:43:99:398,0,602	0/1:14,21:35:99:482,0,255
+1	792263	.	A	G	3847.35	PASS	AC=8;AF=1.00;AN=8;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.4771;MLEAC=8;MLEAF=1.00;MQ=41.20;MQ0=4;QD=27.09	GT:AD:DP:GQ:PL	1/1:0,36:36:90:984,90,0	1/1:0,28:28:84:878,84,0	1/1:1,40:41:99:1079,105,0	1/1:1,36:37:93:932,93,0
+1	792480	.	C	T	5178.35	PASS	AC=8;AF=1.00;AN=8;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=0.8721;MLEAC=8;MLEAF=1.00;MQ=44.96;MQ0=2;QD=31.58	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1017,90,0	1/1:0,47:47:99:1400,126,0	1/1:0,42:42:99:1294,114,0	1/1:0,45:45:99:1493,135,0
+1	793208	.	C	G	234.10	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=1.402;DP=51;Dels=0.00;FS=33.294;HaplotypeScore=0.0000;MLEAC=4;MLEAF=0.500;MQ=25.63;MQ0=11;MQRankSum=3.911;QD=4.59;ReadPosRankSum=-3.527	GT:AD:DP:GQ:PL	0/1:7,1:8:21:21,0,111	0/1:8,7:15:99:105,0,188	0/1:12,9:21:99:127,0,229	0/1:6,1:7:13:13,0,83
+1	793393	.	A	G	262.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-4.563;DP=86;Dels=0.00;FS=5.456;HaplotypeScore=0.4989;MLEAC=4;MLEAF=0.500;MQ=25.24;MQ0=40;MQRankSum=4.105;QD=3.06;ReadPosRankSum=1.120	GT:AD:DP:GQ:PL	0/1:10,4:14:74:74,0,112	0/1:21,7:28:84:84,0,281	0/1:13,7:20:83:83,0,167	0/1:19,4:23:54:54,0,200
+1	793429	.	T	C	1025.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.352;DP=95;Dels=0.00;FS=3.687;HaplotypeScore=0.9971;MLEAC=4;MLEAF=0.500;MQ=27.65;MQ0=37;MQRankSum=2.642;QD=10.80;ReadPosRankSum=-0.417	GT:AD:DP:GQ:PL	0/1:9,3:12:49:49,0,146	0/1:10,22:32:99:472,0,158	0/1:8,17:25:59:306,0,59	0/1:15,11:26:92:231,0,92
+1	793507	.	T	C	44.38	LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=2.568;DP=97;Dels=0.00;FS=11.205;HaplotypeScore=0.5058;MLEAC=1;MLEAF=0.125;MQ=44.17;MQ0=8;MQRankSum=-2.233;QD=2.22;ReadPosRankSum=-1.958	GT:AD:DP:GQ:PL	0/1:16,4:20:76:76,0,460	0/0:29,2:31:44:0,44,812	0/0:23,1:24:17:0,17,489	0/0:18,4:22:45:0,45,497
+1	793750	.	G	T	257.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.165;DP=157;Dels=0.00;FS=7.645;HaplotypeScore=1.3263;MLEAC=4;MLEAF=0.500;MQ=53.32;MQ0=2;MQRankSum=-8.372;QD=1.64;ReadPosRankSum=0.070	GT:AD:DP:GQ:PL	0/1:30,8:38:61:61,0,858	0/1:41,9:50:80:80,0,1192	0/1:28,7:35:90:90,0,842	0/1:26,8:34:59:59,0,763
+1	796643	.	C	T	308.35	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=0.431;DP=173;Dels=0.00;FS=47.967;HaplotypeScore=1.0711;MLEAC=4;MLEAF=0.500;MQ=30.35;MQ0=50;MQRankSum=-3.470;QD=1.78;ReadPosRankSum=-1.839	GT:AD:DP:GQ:PL	0/1:34,11:45:99:151,0,573	0/1:40,9:49:66:66,0,859	0/1:33,9:42:8:8,0,791	0/1:28,9:37:99:115,0,596
+1	796727	.	G	T	1849.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=5.694;DP=169;Dels=0.01;FS=15.992;HaplotypeScore=1.6915;MLEAC=4;MLEAF=0.500;MQ=39.64;MQ0=18;MQRankSum=-5.796;QD=10.95;ReadPosRankSum=-1.410	GT:AD:DP:GQ:PL	0/1:27,25:52:99:382,0,684	0/1:15,25:40:99:547,0,320	0/1:12,26:38:99:647,0,132	0/1:21,16:37:99:306,0,473
+1	796767	.	G	A	3015.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.576;DP=212;Dels=0.00;FS=1.779;HaplotypeScore=3.6355;MLEAC=4;MLEAF=0.500;MQ=41.24;MQ0=15;MQRankSum=-8.168;QD=14.23;ReadPosRankSum=0.666	GT:AD:DP:GQ:PL	0/1:25,34:59:99:706,0,662	0/1:16,34:50:99:857,0,407	0/1:14,33:47:99:874,0,311	0/1:28,26:54:99:611,0,753
+1	796775	.	T	C	2055.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.932;DP=218;Dels=0.00;FS=4.096;HaplotypeScore=2.1009;MLEAC=4;MLEAF=0.500;MQ=40.71;MQ0=17;MQRankSum=7.855;QD=9.43;ReadPosRankSum=-1.205	GT:AD:DP:GQ:PL	0/1:38,26:64:99:676,0,762	0/1:33,15:48:99:362,0,815	0/1:36,13:49:99:300,0,946	0/1:29,28:57:99:750,0,621
+1	796848	.	A	T	1053.95	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=2.960;DP=183;Dels=0.00;FS=8.603;HaplotypeScore=1.5181;MLEAC=4;MLEAF=0.500;MQ=33.58;MQ0=36;MQRankSum=0.040;QD=5.76;ReadPosRankSum=-0.579	GT:AD:DP:GQ:PL	0/1:30,19:49:99:375,0,567	0/1:40,5:45:33:33,0,832	0/1:30,12:42:99:229,0,741	0/1:29,18:47:99:449,0,620
+1	798026	.	C	T	4847.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.686;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.6918;MLEAC=8;MLEAF=1.00;MQ=43.20;MQ0=3;MQRankSum=0.883;QD=31.48;ReadPosRankSum=-0.241	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1126,99,0	1/1:0,36:36:93:1063,93,0	1/1:1,31:32:93:1093,93,0	1/1:1,48:49:99:1591,138,0
+1	799463	.	T	C	5508.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.672;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.4334;MLEAC=8;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.631;QD=32.03;ReadPosRankSum=-1.329	GT:AD:DP:GQ:PL	1/1:1,36:37:99:1171,105,0	1/1:0,51:51:99:1658,153,0	1/1:0,54:54:99:1773,159,0	1/1:0,30:30:84:932,84,0
+1	800007	.	T	C	5259.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.644;DP=160;Dels=0.00;FS=3.239;HaplotypeScore=1.4593;MLEAC=8;MLEAF=1.00;MQ=49.64;MQ0=2;MQRankSum=0.110;QD=32.87;ReadPosRankSum=1.579	GT:AD:DP:GQ:PL	1/1:0,34:34:96:1093,96,0	1/1:0,32:32:90:1021,90,0	1/1:0,38:38:99:1304,114,0	1/1:1,55:56:99:1867,138,0
+1	800383	.	C	T	4448.35	PASS	AC=8;AF=1.00;AN=8;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.6749;MLEAC=8;MLEAF=1.00;MQ=41.77;MQ0=2;QD=33.45	GT:AD:DP:GQ:PL	1/1:0,33:33:90:1007,90,0	1/1:0,30:30:90:1033,90,0	1/1:0,37:37:99:1297,111,0	1/1:0,33:33:99:1137,99,0
+1	801943	.	C	T	5456.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=0.764;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=1.7830;MLEAC=8;MLEAF=1.00;MQ=47.22;MQ0=9;MQRankSum=1.979;QD=27.15;ReadPosRankSum=1.246	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1375,126,0	1/1:2,63:65:99:1820,168,0	1/1:1,46:47:99:1222,111,0	1/1:0,36:36:96:1065,96,0
+1	802006	.	T	C	1019.73	HARD_TO_VALIDATE	AC=5;AF=0.625;AN=8;BaseQRankSum=0.922;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8675;MLEAC=5;MLEAF=0.625;MQ=23.02;MQ0=39;MQRankSum=2.345;QD=8.64;ReadPosRankSum=-0.365	GT:AD:DP:GQ:PL	0/1:7,24:32:21:331,0,21	1/1:7,31:38:45:462,45,0	0/1:8,16:24:7:141,0,7	0/1:10,14:24:78:119,0,78
+1	802093	.	G	A	1921.99	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;BaseQRankSum=4.761;DP=192;Dels=0.00;FS=13.460;HaplotypeScore=2.5518;MLEAC=8;MLEAF=1.00;MQ=20.97;MQ0=42;MQRankSum=3.388;QD=10.01;ReadPosRankSum=2.215	GT:AD:DP:GQ:PL	1/1:6,42:51:57:568,57,0	1/1:15,34:49:2:386,2,0	1/1:6,37:43:45:466,45,0	1/1:9,40:49:51:527,51,0
+1	802104	.	T	C	167.91	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.374;DP=180;Dels=0.00;FS=7.815;HaplotypeScore=1.8710;MLEAC=3;MLEAF=0.375;MQ=21.28;MQ0=32;MQRankSum=0.698;QD=1.23;ReadPosRankSum=0.889	GT:AD:DP:GQ:PL	0/1:33,19:53:99:115,0,353	0/0:38,6:44:42:0,42,419	0/1:34,6:40:55:55,0,319	0/1:29,14:43:32:32,0,355
+1	802124	.	G	A	43.41	HARD_TO_VALIDATE;LowQD;LowQual	AC=3;AF=0.375;AN=8;BaseQRankSum=3.140;DP=220;Dels=0.00;FS=45.830;HaplotypeScore=3.5470;MLEAC=3;MLEAF=0.375;MQ=18.55;MQ0=30;MQRankSum=0.303;QD=0.26;ReadPosRankSum=-0.446	GT:AD:DP:GQ:PL	0/1:60,8:69:16:16,0,465	0/0:48,5:54:13:0,13,418	0/1:36,4:41:18:18,0,347	0/1:43,9:56:43:43,0,359
+1	802191	.	G	A	242.93	HARD_TO_VALIDATE;LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=3.190;DP=489;Dels=0.00;FS=26.992;HaplotypeScore=5.0006;MLEAC=3;MLEAF=0.375;MQ=12.55;MQ0=127;MQRankSum=-1.072;QD=0.61;ReadPosRankSum=-2.771	GT:AD:DP:GQ:PL	0/1:123,33:161:46:46,0,461	0/1:90,44:135:99:101,0,619	0/1:71,29:101:99:130,0,425	0/0:74,18:92:25:0,25,512
+1	802240	.	G	A	444.94	HARD_TO_VALIDATE;LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=4.361;DP=409;Dels=0.00;FS=3.661;HaplotypeScore=13.8502;MLEAC=4;MLEAF=0.500;MQ=11.67;MQ0=126;MQRankSum=2.054;QD=1.09;ReadPosRankSum=-1.825	GT:AD:DP:GQ:PL	0/1:95,36:137:63:63,0,197	0/1:74,29:105:99:151,0,203	0/1:63,26:89:99:159,0,200	0/1:62,16:78:99:104,0,139
+1	802320	.	G	A	2466.31	HARD_TO_VALIDATE	AC=6;AF=0.750;AN=8;BaseQRankSum=4.747;DP=235;Dels=0.00;FS=35.854;HaplotypeScore=4.1652;MLEAC=7;MLEAF=0.875;MQ=30.48;MQ0=29;MQRankSum=6.253;QD=10.49;ReadPosRankSum=2.529	GT:AD:DP:GQ:PL	0/1:26,46:75:99:652,0,116	1/1:19,41:61:17:878,17,0	1/1:21,29:51:15:563,15,0	0/1:19,26:47:2:404,0,2
+1	802338	.	G	A	71.84	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=4.885;DP=252;Dels=0.00;FS=4.009;HaplotypeScore=3.4475;MLEAC=2;MLEAF=0.250;MQ=33.47;MQ0=33;MQRankSum=-6.852;QD=0.51;ReadPosRankSum=0.126	GT:AD:DP:GQ:PL	0/1:62,20:84:57:57,0,916	0/0:46,16:63:4:0,4,795	0/1:35,22:57:47:47,0,556	0/0:30,18:48:10:0,10,446
+1	802381	.	T	C	100.92	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.724;DP=247;Dels=0.00;FS=10.985;HaplotypeScore=5.8982;MLEAC=3;MLEAF=0.375;MQ=41.23;MQ0=21;MQRankSum=-8.977;QD=0.51;ReadPosRankSum=2.588	GT:AD:DP:GQ:PL	0/1:48,34:82:82:82,0,1014	0/1:50,22:72:21:21,0,1157	0/1:27,17:45:31:31,0,479	0/0:30,18:48:8:0,8,705
+1	804115	.	G	A	3168.35	HARD_TO_VALIDATE	AC=8;AF=1.00;AN=8;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=0.8149;MLEAC=8;MLEAF=1.00;MQ=32.50;MQ0=13;QD=25.97	GT:AD:DP:GQ:PL	1/1:0,31:31:87:931,87,0	1/1:0,32:32:75:806,75,0	1/1:0,25:25:54:564,54,0	1/1:0,33:33:87:893,87,0
+1	804540	.	T	C	3514.35	PASS	AC=8;AF=1.00;AN=8;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.2036;MLEAC=8;MLEAF=1.00;MQ=54.25;MQ0=0;QD=27.46	GT:AD:DP:GQ:PL	1/1:0,26:27:60:653,60,0	1/1:0,40:40:99:1188,117,0	1/1:0,29:29:72:798,72,0	1/1:0,32:32:90:901,90,0
+1	807512	.	A	G	3628.35	PASS	AC=8;AF=1.00;AN=8;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.1835;MLEAC=8;MLEAF=1.00;MQ=51.93;MQ0=0;QD=33.60	GT:AD:DP:GQ:PL	1/1:0,12:12:36:417,36,0	1/1:0,30:30:90:1025,90,0	1/1:0,31:31:90:1034,90,0	1/1:0,35:35:99:1178,105,0
+1	807761	.	C	A	4326.35	PASS	AC=8;AF=1.00;AN=8;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.6692;MLEAC=8;MLEAF=1.00;MQ=56.39;MQ0=0;QD=32.78	GT:AD:DP:GQ:PL	1/1:0,30:30:84:998,84,0	1/1:0,32:32:96:1081,96,0	1/1:0,37:37:99:1151,99,0	1/1:0,33:33:99:1122,99,0
+1	808223	.	G	C	2815.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=0.779;DP=146;Dels=0.00;FS=4.743;HaplotypeScore=2.3492;MLEAC=8;MLEAF=1.00;MQ=38.40;MQ0=6;MQRankSum=1.669;QD=19.28;ReadPosRankSum=-0.172	GT:AD:DP:GQ:PL	1/1:6,32:38:57:736,57,0	1/1:5,28:33:38:573,38,0	1/1:2,33:36:84:791,84,0	1/1:3,34:39:78:741,78,0
+1	808631	.	G	A	5709.35	PASS	AC=8;AF=1.00;AN=8;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.5777;MLEAC=8;MLEAF=1.00;MQ=57.30;MQ0=0;QD=33.98	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1660,144,0	1/1:0,52:52:99:1771,156,0	1/1:0,31:31:93:1054,93,0	1/1:0,37:37:99:1250,108,0
+1	808922	.	G	A	4842.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=2.046;DP=161;Dels=0.00;FS=2.053;HaplotypeScore=1.8536;MLEAC=8;MLEAF=1.00;MQ=44.59;MQ0=2;MQRankSum=2.416;QD=30.08;ReadPosRankSum=-1.587	GT:AD:DP:GQ:PL	1/1:0,41:43:99:1168,102,0	1/1:3,52:55:92:1668,92,0	1/1:3,29:32:65:964,65,0	1/1:0,31:31:93:1068,93,0
+1	808928	.	C	T	4981.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=3.331;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.1898;MLEAC=8;MLEAF=1.00;MQ=45.32;MQ0=2;MQRankSum=2.469;QD=30.37;ReadPosRankSum=-1.714	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1369,120,0	1/1:4,48:52:78:1537,78,0	1/1:3,32:35:45:1003,45,0	1/1:0,32:32:96:1098,96,0
+1	811523	.	G	C	34.33	LowQual	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.3779;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=0;QD=11.44	GT:AD:DP:GQ:PL	./.	./.	1/1:0,2:3:6:59,6,0	./.
+1	811765	.	C	T	249.76	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.338;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.3614;MLEAC=5;MLEAF=0.625;MQ=42.89;MQ0=2;MQRankSum=2.281;QD=9.61;ReadPosRankSum=-0.375	GT:AD:DP:GQ:PL	0/1:4,1:5:20:20,0,26	0/1:7,5:13:31:110,0,31	0/0:1,0:1:3:0,3,29	1/1:2,6:8:15:154,15,0
+1	812267	.	A	G	4127.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=-0.601;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7788;MLEAC=8;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.674;QD=28.66;ReadPosRankSum=-1.564	GT:AD:DP:GQ:PL	1/1:0,33:33:90:943,90,0	1/1:0,37:37:99:1123,108,0	1/1:0,38:38:99:1135,111,0	1/1:1,35:36:66:952,66,0
+1	812284	.	C	G	4278.42	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=1.096;DP=139;Dels=0.00;FS=12.308;HaplotypeScore=1.2249;MLEAC=8;MLEAF=1.00;MQ=53.39;MQ0=1;MQRankSum=3.667;QD=30.78;ReadPosRankSum=3.564	GT:AD:DP:GQ:PL	1/1:3,29:32:12:858,12,0	1/1:3,37:40:59:1192,59,0	1/1:0,31:31:90:1027,90,0	1/1:0,36:36:99:1227,108,0
+1	812751	.	T	C	4806.35	PASS	AC=8;AF=1.00;AN=8;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.3356;MLEAC=8;MLEAF=1.00;MQ=58.32;MQ0=6;QD=32.26	GT:AD:DP:GQ:PL	1/1:0,33:33:93:1083,93,0	1/1:0,39:39:99:1322,114,0	1/1:0,35:35:93:1062,93,0	1/1:0,42:42:99:1365,120,0
+1	813046	.	G	A	206.04	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.621;DP=196;Dels=0.00;FS=45.600;HaplotypeScore=3.2689;MLEAC=3;MLEAF=0.375;MQ=55.05;MQ0=2;MQRankSum=-9.272;QD=1.40;ReadPosRankSum=-6.063	GT:AD:DP:GQ:PL	0/0:41,8:49:24:0,24,1227	0/1:44,7:51:16:16,0,1343	0/1:35,10:45:99:100,0,1069	0/1:37,14:51:99:124,0,1114
+1	813050	.	G	A	415.67	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.965;DP=206;Dels=0.00;FS=58.563;HaplotypeScore=3.3115;MLEAC=4;MLEAF=0.500;MQ=54.58;MQ0=2;MQRankSum=-10.108;QD=2.02;ReadPosRankSum=-4.908	GT:AD:DP:GQ:PL	0/1:41,9:50:6:6,0,1223	0/1:46,7:53:15:15,0,1399	0/1:34,12:46:99:167,0,992	0/1:38,19:57:99:259,0,1082
+1	813067	.	T	C	1306.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.317;DP=231;Dels=0.00;FS=95.344;HaplotypeScore=2.2640;MLEAC=4;MLEAF=0.500;MQ=50.15;MQ0=4;MQRankSum=-12.391;QD=5.66;ReadPosRankSum=-2.322	GT:AD:DP:GQ:PL	0/1:38,19:57:99:217,0,1126	0/1:42,19:62:99:196,0,1286	0/1:31,20:51:99:364,0,958	0/1:28,32:61:99:562,0,795
+1	813089	.	G	A	181.09	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-2.956;DP=269;Dels=0.00;FS=31.765;HaplotypeScore=3.2728;MLEAC=2;MLEAF=0.250;MQ=49.05;MQ0=11;MQRankSum=-6.110;QD=1.36;ReadPosRankSum=3.047	GT:AD:DP:GQ:PL	0/1:50,10:60:16:16,0,1312	0/0:67,5:72:74:0,74,1675	0/0:58,5:64:50:0,50,1622	0/1:56,16:73:99:199,0,1396
+1	813109	.	A	C	1544.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.678;DP=266;Dels=0.00;FS=138.432;HaplotypeScore=3.1622;MLEAC=4;MLEAF=0.500;MQ=49.13;MQ0=10;MQRankSum=-13.542;QD=5.81;ReadPosRankSum=5.739	GT:AD:DP:GQ:PL	0/1:32,28:60:99:354,0,961	0/1:47,26:73:99:244,0,1343	0/1:40,22:62:99:403,0,1212	0/1:35,36:71:99:576,0,974
+1	813112	.	T	C	1426.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=8.086;DP=276;Dels=0.00;FS=147.958;HaplotypeScore=2.9925;MLEAC=4;MLEAF=0.500;MQ=48.30;MQ0=13;MQRankSum=-12.765;QD=5.17;ReadPosRankSum=5.328	GT:AD:DP:GQ:PL	0/1:36,27:63:99:327,0,835	0/1:52,26:78:99:184,0,1345	0/1:40,22:62:99:406,0,1135	0/1:36,37:73:99:542,0,887
+1	813237	.	T	C	42.53	LowQD;LowQual	AC=1;AF=0.125;AN=8;BaseQRankSum=0.531;DP=216;Dels=0.00;FS=1.012;HaplotypeScore=1.7460;MLEAC=1;MLEAF=0.125;MQ=44.78;MQ0=13;MQRankSum=-8.844;QD=0.75;ReadPosRankSum=-0.916	GT:AD:DP:GQ:PL	0/0:48,13:61:25:0,25,1421	0/0:45,13:58:73:0,73,1445	0/1:46,11:57:74:74,0,1398	0/0:28,11:39:11:0,11,840
+1	813246	.	G	A	79.54	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-2.804;DP=224;Dels=0.00;FS=0.882;HaplotypeScore=2.3334;MLEAC=2;MLEAF=0.250;MQ=45.34;MQ0=14;MQRankSum=-9.524;QD=0.77;ReadPosRankSum=-0.079	GT:AD:DP:GQ:PL	0/0:49,15:64:6:0,6,1430	0/0:45,12:57:24:0,24,1408	0/1:48,12:60:99:102,0,1426	0/1:30,13:43:10:10,0,933
+1	813250	.	G	T	257.37	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=1.697;DP=224;Dels=0.00;FS=1.771;HaplotypeScore=1.5870;MLEAC=3;MLEAF=0.375;MQ=45.10;MQ0=13;MQRankSum=-10.204;QD=1.51;ReadPosRankSum=-1.200	GT:AD:DP:GQ:PL	0/1:48,18:66:99:102,0,1441	0/0:41,13:54:6:0,6,1210	0/1:47,14:61:99:110,0,1415	0/1:29,14:43:78:78,0,851
+1	813288	.	G	T	1183.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.335;DP=237;Dels=0.00;FS=0.000;HaplotypeScore=2.6595;MLEAC=4;MLEAF=0.500;MQ=46.34;MQ0=12;MQRankSum=-12.139;QD=5.00;ReadPosRankSum=0.494	GT:AD:DP:GQ:PL	0/1:39,29:68:99:317,0,1169	0/1:37,26:63:99:289,0,1058	0/1:40,17:57:99:250,0,1221	0/1:28,21:49:99:360,0,798
+1	813291	.	A	G	1131.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.186;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=2.1600;MLEAC=4;MLEAF=0.500;MQ=47.18;MQ0=12;MQRankSum=-12.013;QD=4.88;ReadPosRankSum=1.547	GT:AD:DP:GQ:PL	0/1:39,26:66:99:286,0,1190	0/1:38,22:61:99:262,0,1113	0/1:37,19:56:99:259,0,1117	0/1:28,21:49:99:357,0,772
+1	813317	.	C	A	1235.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=9.422;DP=251;Dels=0.00;FS=9.869;HaplotypeScore=5.6966;MLEAC=4;MLEAF=0.500;MQ=47.52;MQ0=12;MQRankSum=-12.380;QD=4.92;ReadPosRankSum=4.290	GT:AD:DP:GQ:PL	0/1:43,28:71:99:283,0,1176	0/1:39,23:62:99:234,0,1025	0/1:36,20:56:99:281,0,964	0/1:34,28:62:99:470,0,837
+1	813331	.	G	T	1138.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.107;DP=256;Dels=0.00;FS=15.400;HaplotypeScore=1.4721;MLEAC=4;MLEAF=0.500;MQ=45.70;MQ0=16;MQRankSum=-12.282;QD=4.45;ReadPosRankSum=3.194	GT:AD:DP:GQ:PL	0/1:39,30:69:99:285,0,1153	0/1:45,21:66:99:185,0,1293	0/1:36,20:56:99:246,0,1097	0/1:35,30:65:99:455,0,1008
+1	813340	.	G	A	788.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.110;DP=241;Dels=0.00;FS=7.111;HaplotypeScore=1.1497;MLEAC=4;MLEAF=0.500;MQ=46.19;MQ0=12;MQRankSum=-11.546;QD=3.27;ReadPosRankSum=3.225	GT:AD:DP:GQ:PL	0/1:39,24:63:99:173,0,1131	0/1:43,19:62:99:171,0,1213	0/1:40,15:55:99:163,0,1229	0/1:37,24:61:99:314,0,1040
+1	813341	.	C	T	827.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.620;DP=242;Dels=0.00;FS=7.016;HaplotypeScore=1.1497;MLEAC=4;MLEAF=0.500;MQ=46.10;MQ0=11;MQRankSum=-11.268;QD=3.42;ReadPosRankSum=3.099	GT:AD:DP:GQ:PL	0/1:41,23:64:99:171,0,1183	0/1:42,19:61:99:175,0,1198	0/1:41,15:56:99:165,0,1241	0/1:36,25:61:99:349,0,1056
+1	813342	.	A	G	819.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.358;DP=241;Dels=0.00;FS=8.133;HaplotypeScore=1.3993;MLEAC=4;MLEAF=0.500;MQ=45.80;MQ0=11;MQRankSum=-11.425;QD=3.40;ReadPosRankSum=2.495	GT:AD:DP:GQ:PL	0/1:39,24:63:99:169,0,1179	0/1:42,19:61:99:172,0,1238	0/1:40,15:55:99:167,0,1246	0/1:37,25:62:99:344,0,1051
+1	813353	.	C	A	230.21	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=0.119;DP=257;Dels=0.00;FS=2.681;HaplotypeScore=2.4749;MLEAC=3;MLEAF=0.375;MQ=43.56;MQ0=13;MQRankSum=-6.722;QD=1.18;ReadPosRankSum=-1.259	GT:AD:DP:GQ:PL	0/1:52,11:63:14:14,0,1269	0/1:58,9:67:59:59,0,1414	0/0:56,6:62:17:0,17,1535	0/1:50,15:65:99:191,0,1244
+1	813377	.	G	T	979.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.272;DP=265;Dels=0.00;FS=43.878;HaplotypeScore=2.4684;MLEAC=4;MLEAF=0.500;MQ=42.05;MQ0=13;MQRankSum=-12.105;QD=3.70;ReadPosRankSum=-4.042	GT:AD:DP:GQ:PL	0/1:40,25:65:56:56,0,1251	0/1:49,23:72:99:204,0,1405	0/1:40,24:64:99:367,0,1170	0/1:32,32:64:99:385,0,930
+1	813385	.	G	T	836.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.823;DP=270;Dels=0.00;FS=45.943;HaplotypeScore=1.3299;MLEAC=4;MLEAF=0.500;MQ=43.04;MQ0=13;MQRankSum=-11.878;QD=3.10;ReadPosRankSum=-0.659	GT:AD:DP:GQ:PL	0/1:43,20:63:51:51,0,1299	0/1:50,26:76:99:227,0,1478	0/1:43,22:65:99:273,0,1254	0/1:37,28:65:99:318,0,1097
+1	813397	.	G	C	774.95	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=3.823;DP=272;Dels=0.00;FS=35.010;HaplotypeScore=1.3846;MLEAC=4;MLEAF=0.500;MQ=43.26;MQ0=17;MQRankSum=-11.656;QD=2.85;ReadPosRankSum=3.338	GT:AD:DP:GQ:PL	0/1:42,22:64:25:25,0,1200	0/1:54,27:81:99:292,0,1465	0/1:42,20:62:99:266,0,1236	0/1:39,26:65:99:224,0,1101
+1	813417	.	G	C	871.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=8.583;DP=270;Dels=0.00;FS=45.565;HaplotypeScore=8.2954;MLEAC=4;MLEAF=0.500;MQ=42.22;MQ0=23;MQRankSum=-11.893;QD=3.23;ReadPosRankSum=2.971	GT:AD:DP:GQ:PL	0/1:33,25:58:94:94,0,897	0/1:50,32:82:99:400,0,1268	0/1:48,22:70:99:224,0,1230	0/1:33,27:60:99:186,0,853
+1	813421	.	G	A	155.90	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-3.434;DP=269;Dels=0.00;FS=44.187;HaplotypeScore=9.0369;MLEAC=3;MLEAF=0.375;MQ=42.30;MQ0=22;MQRankSum=-6.130;QD=0.75;ReadPosRankSum=0.262	GT:AD:DP:GQ:PL	0/0:50,11:61:58:0,58,1244	0/1:68,14:82:73:73,0,1718	0/1:57,10:67:53:53,0,1523	0/1:49,10:59:64:64,0,1097
+1	813439	.	G	A	602.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.957;DP=260;Dels=0.00;FS=39.373;HaplotypeScore=5.5248;MLEAC=4;MLEAF=0.500;MQ=43.84;MQ0=24;MQRankSum=-11.740;QD=2.32;ReadPosRankSum=0.639	GT:AD:DP:GQ:PL	0/1:35,30:66:91:91,0,1013	0/1:44,30:74:99:356,0,1165	0/1:51,16:67:87:87,0,1516	0/1:31,22:53:99:101,0,924
+1	813462	.	T	A	128.90	HARD_TO_VALIDATE;LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.448;DP=206;Dels=0.00;FS=31.165;HaplotypeScore=2.0187;MLEAC=2;MLEAF=0.250;MQ=48.29;MQ0=21;MQRankSum=-8.846;QD=1.15;ReadPosRankSum=3.077	GT:AD:DP:GQ:PL	0/1:33,19:52:45:45,0,963	0/1:41,18:60:99:118,0,1153	0/0:45,8:53:77:0,77,1453	0/0:31,10:41:36:0,36,963
+1	813640	.	A	G	3887.35	PASS	AC=8;AF=1.00;AN=8;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.8565;MLEAC=8;MLEAF=1.00;MQ=37.88;MQ0=2;QD=29.67	GT:AD:DP:GQ:PL	1/1:0,33:33:93:972,93,0	1/1:0,27:27:78:805,78,0	1/1:0,29:29:84:884,84,0	1/1:0,42:42:99:1252,120,0
+1	813747	.	G	A	4262.35	PASS	AC=8;AF=1.00;AN=8;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.8139;MLEAC=8;MLEAF=1.00;MQ=41.60;MQ0=2;QD=32.29	GT:AD:DP:GQ:PL	1/1:0,21:21:51:588,51,0	1/1:0,42:43:99:1405,126,0	1/1:0,28:28:81:923,81,0	1/1:0,40:40:99:1372,120,0
+1	814052	.	G	A	149.71	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.016;DP=185;Dels=0.00;FS=20.134;HaplotypeScore=0.3915;MLEAC=3;MLEAF=0.375;MQ=48.08;MQ0=13;MQRankSum=-8.963;QD=0.98;ReadPosRankSum=-4.402	GT:AD:DP:GQ:PL	0/1:35,22:57:99:117,0,920	0/0:29,4:33:5:0,5,790	0/1:29,11:40:22:22,0,887	0/1:41,14:55:43:43,0,1190
+1	814087	.	C	A	930.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.843;DP=223;Dels=0.00;FS=70.524;HaplotypeScore=2.5810;MLEAC=4;MLEAF=0.500;MQ=39.02;MQ0=26;MQRankSum=-9.636;QD=4.17;ReadPosRankSum=3.592	GT:AD:DP:GQ:PL	0/1:33,38:71:99:279,0,867	0/1:32,19:51:99:337,0,803	0/1:27,17:44:99:168,0,767	0/1:35,22:57:99:179,0,935
+1	814094	.	A	G	1235.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=3.226;DP=231;Dels=0.00;FS=94.422;HaplotypeScore=2.2486;MLEAC=4;MLEAF=0.500;MQ=37.31;MQ0=28;MQRankSum=-9.375;QD=5.35;ReadPosRankSum=3.977	GT:AD:DP:GQ:PL	0/1:29,41:72:99:289,0,725	0/1:26,24:51:99:423,0,592	0/1:28,19:47:99:264,0,737	0/1:34,27:61:99:292,0,839
+1	814105	.	C	T	1347.94	HARD_TO_VALIDATE	AC=4;AF=0.500;AN=8;BaseQRankSum=7.311;DP=234;Dels=0.00;FS=62.972;HaplotypeScore=2.4249;MLEAC=4;MLEAF=0.500;MQ=34.44;MQ0=27;MQRankSum=-8.198;QD=5.76;ReadPosRankSum=2.651	GT:AD:DP:GQ:PL	0/1:32,41:73:99:312,0,692	0/1:28,25:53:99:425,0,526	0/1:29,22:51:99:322,0,723	0/1:30,27:57:99:321,0,642
+1	814147	.	G	C	2047.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.690;DP=238;Dels=0.00;FS=118.176;HaplotypeScore=7.7807;MLEAC=4;MLEAF=0.500;MQ=32.01;MQ0=21;MQRankSum=-7.492;QD=8.60;ReadPosRankSum=0.611	GT:AD:DP:GQ:PL	0/1:27,36:63:99:355,0,708	0/1:31,32:63:99:516,0,775	0/1:24,30:54:99:611,0,648	0/1:22,36:58:99:598,0,485
+1	814157	.	A	G	260.05	PASS	AC=2;AF=0.250;AN=8;BaseQRankSum=-0.863;DP=232;Dels=0.00;FS=20.941;HaplotypeScore=10.6880;MLEAC=2;MLEAF=0.250;MQ=32.48;MQ0=18;MQRankSum=-1.407;QD=2.08;ReadPosRankSum=2.552	GT:AD:DP:GQ:PL	0/0:54,3:57:15:0,15,1008	0/1:54,11:65:99:114,0,1248	0/0:45,5:50:27:0,27,1262	0/1:45,15:60:99:180,0,1076
+1	814160	.	C	G	1543.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.429;DP=226;Dels=0.00;FS=84.685;HaplotypeScore=10.6900;MLEAC=4;MLEAF=0.500;MQ=32.87;MQ0=16;MQRankSum=-8.136;QD=6.83;ReadPosRankSum=1.726	GT:AD:DP:GQ:PL	0/1:30,27:57:99:189,0,776	0/1:32,27:60:99:503,0,745	0/1:29,21:50:99:364,0,832	0/1:30,29:59:99:520,0,747
+1	814173	.	A	T	1627.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.413;DP=232;Dels=0.00;FS=78.308;HaplotypeScore=4.1111;MLEAC=4;MLEAF=0.500;MQ=33.29;MQ0=14;MQRankSum=-8.822;QD=7.02;ReadPosRankSum=1.219	GT:AD:DP:GQ:PL	0/1:30,25:55:99:210,0,815	0/1:31,23:54:99:377,0,824	0/1:31,27:58:99:449,0,929	0/1:32,33:65:99:624,0,817
+1	814215	.	A	G	910.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=3.515;DP=193;Dels=0.00;FS=122.458;HaplotypeScore=6.3193;MLEAC=4;MLEAF=0.500;MQ=35.78;MQ0=4;MQRankSum=-9.051;QD=4.72;ReadPosRankSum=2.254	GT:AD:DP:GQ:PL	0/1:29,21:51:99:341,0,698	0/1:31,12:43:99:106,0,807	0/1:35,14:49:99:160,0,949	0/1:28,21:50:99:336,0,796
+1	814217	.	C	A	939.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.062;DP=187;Dels=0.00;FS=127.820;HaplotypeScore=6.1747;MLEAC=4;MLEAF=0.500;MQ=35.76;MQ0=4;MQRankSum=-9.203;QD=5.03;ReadPosRankSum=1.608	GT:AD:DP:GQ:PL	0/1:29,21:50:99:365,0,735	0/1:29,11:40:99:111,0,774	0/1:34,14:48:99:160,0,951	0/1:28,21:49:99:336,0,821
+1	814244	.	A	G	638.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.422;DP=215;Dels=0.00;FS=45.921;HaplotypeScore=2.0851;MLEAC=4;MLEAF=0.500;MQ=37.14;MQ0=8;MQRankSum=-9.199;QD=2.97;ReadPosRankSum=-0.239	GT:AD:DP:GQ:PL	0/1:32,26:59:99:223,0,901	0/1:36,14:50:99:119,0,986	0/1:38,14:52:99:121,0,1119	0/1:34,20:54:99:208,0,990
+1	814264	.	C	T	5446.35	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=-0.635;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=1.0361;MLEAC=8;MLEAF=1.00;MQ=37.20;MQ0=6;MQRankSum=1.327;QD=24.87;ReadPosRankSum=0.037	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1433,105,0	1/1:2,49:51:99:1313,120,0	1/1:1,52:53:99:1461,107,0	1/1:2,50:52:62:1265,62,0
+1	814297	.	T	A	1244.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.254;DP=247;Dels=0.00;FS=1.216;HaplotypeScore=1.7513;MLEAC=4;MLEAF=0.500;MQ=37.39;MQ0=10;MQRankSum=-9.749;QD=5.04;ReadPosRankSum=2.894	GT:AD:DP:GQ:PL	0/1:33,44:77:99:489,0,866	0/1:36,29:65:99:456,0,1051	0/1:38,17:55:99:190,0,1136	0/1:31,19:50:99:142,0,884
+1	814300	.	T	A	1214.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.910;DP=247;Dels=0.00;FS=0.576;HaplotypeScore=1.3075;MLEAC=4;MLEAF=0.500;MQ=37.42;MQ0=10;MQRankSum=-9.426;QD=4.92;ReadPosRankSum=3.426	GT:AD:DP:GQ:PL	0/1:32,44:76:99:486,0,843	0/1:38,28:66:99:460,0,1071	0/1:37,17:54:99:161,0,1099	0/1:33,18:51:99:140,0,876
+1	814313	.	C	T	116.93	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=1.535;DP=240;Dels=0.00;FS=3.121;HaplotypeScore=0.4972;MLEAC=3;MLEAF=0.375;MQ=37.23;MQ0=11;MQRankSum=-4.871;QD=0.66;ReadPosRankSum=2.885	GT:AD:DP:GQ:PL	0/1:57,17:74:81:81,0,1195	0/0:57,6:63:65:0,65,1530	0/1:45,7:52:22:22,0,1163	0/1:43,8:51:48:48,0,988
+1	814352	.	A	G	190.91	PASS	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.063;DP=187;Dels=0.00;FS=0.954;HaplotypeScore=0.8123;MLEAC=2;MLEAF=0.250;MQ=33.27;MQ0=16;MQRankSum=-2.768;QD=1.87;ReadPosRankSum=0.817	GT:AD:DP:GQ:PL	0/1:36,10:46:99:111,0,709	0/1:45,10:55:99:114,0,1096	0/0:37,3:40:31:0,31,892	0/0:42,3:45:36:0,36,991
+1	814392	.	C	T	2066.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=3.812;DP=222;Dels=0.00;FS=4.919;HaplotypeScore=5.3351;MLEAC=4;MLEAF=0.500;MQ=35.04;MQ0=20;MQRankSum=-2.078;QD=9.31;ReadPosRankSum=-3.407	GT:AD:DP:GQ:PL	0/1:24,23:47:99:565,0,498	0/1:28,39:67:99:689,0,765	0/1:18,30:48:99:433,0,489	0/1:32,22:54:99:412,0,710
+1	814405	.	T	C	3292.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.019;DP=263;Dels=0.00;FS=6.194;HaplotypeScore=2.1716;MLEAC=4;MLEAF=0.500;MQ=38.70;MQ0=18;MQRankSum=-0.761;QD=12.52;ReadPosRankSum=-3.536	GT:AD:DP:GQ:PL	0/1:24,34:58:99:854,0,545	0/1:28,48:76:99:912,0,735	0/1:17,38:55:99:671,0,431	0/1:35,39:74:99:888,0,833
+1	814459	.	T	C	5189.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.878;DP=357;Dels=0.00;FS=1.832;HaplotypeScore=2.0550;MLEAC=4;MLEAF=0.500;MQ=44.23;MQ0=9;MQRankSum=-6.992;QD=14.54;ReadPosRankSum=3.819	GT:AD:DP:GQ:PL	0/1:30,52:82:99:1369,0,709	0/1:33,62:95:99:1435,0,864	0/1:31,46:77:99:937,0,846	0/1:37,66:103:99:1481,0,810
+1	814490	.	C	A	359.29	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.736;DP=284;Dels=0.00;FS=1.353;HaplotypeScore=11.2011;MLEAC=4;MLEAF=0.500;MQ=50.07;MQ0=3;MQRankSum=-4.066;QD=1.27;ReadPosRankSum=-1.909	GT:AD:DP:GQ:PL	0/1:58,9:67:93:93,0,1664	0/1:65,7:72:9:9,0,1863	0/1:54,7:61:22:22,0,1581	0/1:66,18:84:99:267,0,1710
+1	814495	.	C	A	3120.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.219;DP=260;Dels=0.00;FS=9.866;HaplotypeScore=9.3962;MLEAC=4;MLEAF=0.500;MQ=50.14;MQ0=3;MQRankSum=-10.767;QD=12.00;ReadPosRankSum=-2.519	GT:AD:DP:GQ:PL	0/1:26,35:61:99:952,0,707	0/1:32,32:65:99:780,0,905	0/1:38,22:60:99:481,0,1123	0/1:31,43:74:99:940,0,806
+1	814514	.	G	T	1182.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.734;DP=189;Dels=0.00;FS=15.144;HaplotypeScore=3.2085;MLEAC=4;MLEAF=0.500;MQ=52.69;MQ0=3;MQRankSum=-10.675;QD=6.26;ReadPosRankSum=-6.655	GT:AD:DP:GQ:PL	0/1:32,11:43:99:218,0,996	0/1:30,21:51:99:463,0,887	0/1:32,13:45:99:192,0,949	0/1:28,22:50:99:342,0,781
+1	814518	.	C	T	490.98	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.990;DP=177;Dels=0.00;FS=3.278;HaplotypeScore=3.4582;MLEAC=4;MLEAF=0.500;MQ=53.81;MQ0=3;MQRankSum=-8.951;QD=2.77;ReadPosRankSum=-5.021	GT:AD:DP:GQ:PL	0/1:33,6:39:19:19,0,1037	0/1:31,16:47:99:307,0,850	0/1:33,7:41:48:48,0,1000	0/1:35,15:50:99:149,0,982
+1	814524	.	C	T	220.07	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=3.162;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.2664;MLEAC=3;MLEAF=0.375;MQ=55.80;MQ0=3;MQRankSum=-7.964;QD=1.83;ReadPosRankSum=-5.345	GT:AD:DP:GQ:PL	0/1:33,5:38:21:21,0,1034	0/1:30,11:41:99:197,0,881	0/0:35,4:39:4:0,4,1079	0/1:31,10:41:34:34,0,912
+1	814525	.	A	G	103.34	PASS	AC=1;AF=0.125;AN=8;BaseQRankSum=2.925;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7252;MLEAC=1;MLEAF=0.125;MQ=56.09;MQ0=3;MQRankSum=-7.042;QD=2.65;ReadPosRankSum=-4.294	GT:AD:DP:GQ:PL	0/0:32,3:35:38:0,38,1053	0/1:30,9:39:99:135,0,887	0/0:35,3:38:35:0,35,1119	0/0:31,8:39:37:0,37,985
+1	814609	.	A	T	1061.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=0.866;DP=192;Dels=0.00;FS=44.428;HaplotypeScore=9.0075;MLEAC=4;MLEAF=0.500;MQ=52.25;MQ0=1;MQRankSum=-10.058;QD=5.53;ReadPosRankSum=2.067	GT:AD:DP:GQ:PL	0/1:20,18:38:99:435,0,522	0/1:36,22:58:99:386,0,1046	0/1:28,15:43:99:122,0,860	0/1:38,13:51:99:151,0,1093
+1	814611	.	A	C	1273.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=3.920;DP=196;Dels=0.00;FS=40.953;HaplotypeScore=9.2575;MLEAC=4;MLEAF=0.500;MQ=52.13;MQ0=1;MQRankSum=-9.829;QD=6.50;ReadPosRankSum=1.718	GT:AD:DP:GQ:PL	0/1:21,20:41:99:491,0,545	0/1:36,24:60:99:471,0,1024	0/1:28,15:43:99:123,0,840	0/1:36,15:51:99:221,0,1050
+1	814618	.	A	G	383.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.348;DP=206;Dels=0.00;FS=15.409;HaplotypeScore=11.2933;MLEAC=4;MLEAF=0.500;MQ=51.68;MQ0=1;MQRankSum=-5.248;QD=1.86;ReadPosRankSum=1.288	GT:AD:DP:GQ:PL	0/1:35,7:42:97:97,0,1023	0/1:56,11:67:99:171,0,1501	0/1:34,12:46:80:80,0,998	0/1:41,9:50:68:68,0,1212
+1	814681	.	A	T	449.92	PASS	AC=3;AF=0.375;AN=8;BaseQRankSum=-1.701;DP=229;Dels=0.00;FS=25.907;HaplotypeScore=0.7479;MLEAC=3;MLEAF=0.375;MQ=50.37;MQ0=0;MQRankSum=-4.418;QD=2.45;ReadPosRankSum=1.179	GT:AD:DP:GQ:PL	0/1:54,13:67:99:218,0,1521	0/1:46,15:61:99:222,0,1301	0/0:41,4:45:27:0,27,1261	0/1:48,7:55:44:44,0,1395
+1	814694	.	A	C	1744.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-10.436;DP=206;Dels=0.00;FS=77.760;HaplotypeScore=1.6605;MLEAC=4;MLEAF=0.500;MQ=50.95;MQ0=0;MQRankSum=-9.955;QD=8.47;ReadPosRankSum=2.199	GT:AD:DP:GQ:PL	0/1:27,28:55:99:518,0,786	0/1:28,28:56:99:469,0,801	0/1:25,16:41:99:297,0,745	0/1:25,28:53:99:493,0,685
+1	814710	.	G	A	1720.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.705;DP=198;Dels=0.00;FS=73.650;HaplotypeScore=4.9095;MLEAC=4;MLEAF=0.500;MQ=51.79;MQ0=0;MQRankSum=-10.785;QD=8.69;ReadPosRankSum=0.065	GT:AD:DP:GQ:PL	0/1:29,25:54:99:547,0,817	0/1:29,22:51:99:438,0,822	0/1:30,13:43:99:280,0,893	0/1:27,23:50:99:488,0,769
+1	814731	.	T	C	988.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.515;DP=184;Dels=0.00;FS=70.581;HaplotypeScore=2.2664;MLEAC=4;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-10.410;QD=5.37;ReadPosRankSum=-1.911	GT:AD:DP:GQ:PL	0/1:30,17:47:99:335,0,904	0/1:37,14:51:99:283,0,1094	0/1:34,9:43:99:144,0,992	0/1:28,15:43:99:259,0,821
+1	814742	.	C	G	481.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.033;DP=167;Dels=0.00;FS=65.314;HaplotypeScore=1.5026;MLEAC=4;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-9.179;QD=2.89;ReadPosRankSum=-2.773	GT:AD:DP:GQ:PL	0/1:33,12:45:99:197,0,984	0/1:34,9:43:99:138,0,998	0/1:35,8:43:99:108,0,1035	0/1:29,7:36:71:71,0,811
+1	815181	.	G	T	39.91	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.760;DP=186;Dels=0.00;FS=30.376;HaplotypeScore=3.5218;MLEAC=2;MLEAF=0.250;MQ=54.09;MQ0=5;MQRankSum=-8.136;QD=0.36;ReadPosRankSum=2.016	GT:AD:DP:GQ:PL	0/0:22,2:24:63:0,63,743	0/1:46,14:60:45:45,0,1368	0/1:41,11:52:29:29,0,1215	0/0:45,5:50:38:0,38,1368
+1	815197	.	T	C	41.91	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-5.342;DP=179;Dels=0.00;FS=29.810;HaplotypeScore=1.3510;MLEAC=2;MLEAF=0.250;MQ=53.95;MQ0=5;MQRankSum=-8.111;QD=0.39;ReadPosRankSum=5.186	GT:AD:DP:GQ:PL	0/0:23,2:25:63:0,63,739	0/1:45,12:57:45:45,0,1348	0/1:40,10:50:31:31,0,1224	0/0:42,5:47:36:0,36,1265
+1	815277	.	T	C	56.53	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.034;DP=170;Dels=0.00;FS=12.024;HaplotypeScore=5.0587;MLEAC=3;MLEAF=0.375;MQ=49.33;MQ0=8;MQRankSum=-5.425;QD=0.41;ReadPosRankSum=-2.683	GT:AD:DP:GQ:PL	0/0:30,3:33:11:0,11,805	0/1:39,8:47:41:41,0,1114	0/1:39,7:46:33:33,0,1123	0/1:38,6:44:16:16,0,1065
+1	815337	.	G	T	295.96	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.037;DP=185;Dels=0.00;FS=20.230;HaplotypeScore=4.3260;MLEAC=4;MLEAF=0.500;MQ=43.12;MQ0=16;MQRankSum=-5.716;QD=1.60;ReadPosRankSum=0.588	GT:AD:DP:GQ:PL	0/1:30,8:38:24:24,0,748	0/1:38,12:50:87:87,0,993	0/1:32,10:42:99:123,0,886	0/1:45,9:54:94:94,0,1216
+1	815373	.	C	T	41.52	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-1.125;DP=156;Dels=0.00;FS=33.434;HaplotypeScore=2.1193;MLEAC=2;MLEAF=0.250;MQ=48.98;MQ0=14;MQRankSum=-7.522;QD=0.50;ReadPosRankSum=-1.252	GT:AD:DP:GQ:PL	0/1:29,9:39:6:6,0,836	0/0:27,15:42:55:0,55,877	0/0:24,7:31:20:0,20,787	0/1:36,7:43:68:68,0,1079
+1	815463	.	T	C	715.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.145;DP=203;Dels=0.00;FS=8.878;HaplotypeScore=9.1764;MLEAC=4;MLEAF=0.500;MQ=44.29;MQ0=11;MQRankSum=-10.931;QD=3.53;ReadPosRankSum=-2.334	GT:AD:DP:GQ:PL	0/1:23,12:35:79:79,0,686	0/1:38,25:63:99:279,0,1006	0/1:35,21:56:99:173,0,990	0/1:28,21:49:99:217,0,768
+1	815469	.	G	T	194.10	PASS	AC=2;AF=0.250;AN=8;BaseQRankSum=1.114;DP=223;Dels=0.00;FS=9.672;HaplotypeScore=11.8201;MLEAC=2;MLEAF=0.250;MQ=44.38;MQ0=10;MQRankSum=-5.697;QD=1.55;ReadPosRankSum=-1.250	GT:AD:DP:GQ:PL	0/0:34,4:38:55:0,55,967	0/1:56,11:67:71:71,0,1316	0/0:51,9:60:5:0,5,1194	0/1:45,13:58:99:156,0,1095
+1	815497	.	A	G	1945.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=2.694;DP=282;Dels=0.00;FS=33.913;HaplotypeScore=5.1705;MLEAC=4;MLEAF=0.500;MQ=43.86;MQ0=6;MQRankSum=-10.870;QD=6.90;ReadPosRankSum=2.613	GT:AD:DP:GQ:PL	0/1:29,21:50:99:351,0,731	0/1:46,39:86:99:563,0,1221	0/1:35,33:68:99:437,0,951	0/1:40,37:77:99:627,0,1002
+1	815520	.	C	T	3095.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.941;DP=305;Dels=0.00;FS=4.101;HaplotypeScore=12.2350;MLEAC=4;MLEAF=0.500;MQ=43.53;MQ0=7;MQRankSum=-13.985;QD=10.15;ReadPosRankSum=1.418	GT:AD:DP:GQ:PL	0/1:23,35:58:99:539,0,599	0/1:26,56:82:99:909,0,698	0/1:33,39:72:99:613,0,983	0/1:30,61:91:99:1067,0,783
+1	815573	.	C	T	1621.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.819;DP=249;Dels=0.00;FS=4.524;HaplotypeScore=5.3895;MLEAC=4;MLEAF=0.500;MQ=46.21;MQ0=15;MQRankSum=-13.173;QD=6.51;ReadPosRankSum=1.228	GT:AD:DP:GQ:PL	0/1:25,26:51:99:346,0,706	0/1:30,37:67:99:469,0,860	0/1:24,27:52:99:336,0,674	0/1:40,39:79:99:503,0,1180
+1	815601	.	T	C	405.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=1.013;DP=187;Dels=0.01;FS=10.669;HaplotypeScore=5.9834;MLEAC=4;MLEAF=0.500;MQ=49.19;MQ0=15;MQRankSum=-9.435;QD=2.17;ReadPosRankSum=-4.126	GT:AD:DP:GQ:PL	0/1:22,12:34:91:91,0,615	0/1:38,19:57:99:120,0,1135	0/1:30,12:42:92:92,0,880	0/1:34,18:52:99:135,0,942
+1	815611	.	C	T	124.99	PASS	AC=2;AF=0.250;AN=8;BaseQRankSum=4.360;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=6.6208;MLEAC=2;MLEAF=0.250;MQ=50.85;MQ0=15;MQRankSum=-8.557;QD=1.58;ReadPosRankSum=-4.134	GT:AD:DP:GQ:PL	0/1:19,10:29:34:34,0,515	0/1:32,18:50:99:125,0,849	0/0:27,9:36:17:0,17,729	0/0:30,11:41:37:0,37,829
+1	815662	.	G	T	3559.35	PASS	AC=8;AF=1.00;AN=8;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.3281;MLEAC=8;MLEAF=1.00;MQ=59.72;MQ0=1;QD=33.26	GT:AD:DP:GQ:PL	1/1:1,23:24:69:823,69,0	1/1:0,31:31:90:993,90,0	1/1:0,31:31:90:1060,90,0	1/1:0,21:21:63:709,63,0
+1	815681	.	G	T	3060.36	PASS	AC=8;AF=1.00;AN=8;BaseQRankSum=0.577;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.1047;MLEAC=8;MLEAF=1.00;MQ=59.39;MQ0=1;MQRankSum=-1.155;QD=31.23;ReadPosRankSum=-0.541	GT:AD:DP:GQ:PL	1/1:2,20:22:31:649,31,0	1/1:0,28:28:81:886,81,0	1/1:0,33:33:96:1090,96,0	1/1:0,14:14:42:461,42,0
+1	815728	.	A	G	660.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-3.681;DP=166;Dels=0.00;FS=76.748;HaplotypeScore=6.2820;MLEAC=4;MLEAF=0.500;MQ=53.33;MQ0=3;MQRankSum=-9.553;QD=3.98;ReadPosRankSum=6.864	GT:AD:DP:GQ:PL	0/1:29,8:37:99:132,0,775	0/1:33,15:48:99:221,0,939	0/1:33,9:42:99:116,0,988	0/1:23,15:38:99:224,0,669
+1	815757	.	G	A	905.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=3.561;DP=194;Dels=0.00;FS=89.480;HaplotypeScore=2.1639;MLEAC=4;MLEAF=0.500;MQ=51.26;MQ0=4;MQRankSum=-10.882;QD=4.67;ReadPosRankSum=-2.373	GT:AD:DP:GQ:PL	0/1:32,13:45:99:228,0,915	0/1:31,21:52:99:317,0,879	0/1:39,10:49:62:62,0,1222	0/1:26,22:48:99:331,0,727
+1	815803	.	G	A	960.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=5.743;DP=185;Dels=0.00;FS=64.905;HaplotypeScore=1.3209;MLEAC=4;MLEAF=0.500;MQ=50.31;MQ0=6;MQRankSum=-11.056;QD=5.19;ReadPosRankSum=3.500	GT:AD:DP:GQ:PL	0/1:28,12:41:99:152,0,828	0/1:27,20:47:99:339,0,754	0/1:34,12:46:99:107,0,1029	0/1:25,26:51:99:395,0,703
+1	815804	.	T	G	898.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.320;DP=188;Dels=0.00;FS=64.867;HaplotypeScore=1.3209;MLEAC=4;MLEAF=0.500;MQ=50.19;MQ0=6;MQRankSum=-11.126;QD=4.78;ReadPosRankSum=3.697	GT:AD:DP:GQ:PL	0/1:30,12:42:99:142,0,845	0/1:27,20:47:99:315,0,773	0/1:35,13:48:99:102,0,962	0/1:25,26:51:99:372,0,698
+1	815815	.	A	T	948.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.028;DP=202;Dels=0.00;FS=67.118;HaplotypeScore=2.5257;MLEAC=4;MLEAF=0.500;MQ=48.60;MQ0=8;MQRankSum=-11.720;QD=4.70;ReadPosRankSum=3.304	GT:AD:DP:GQ:PL	0/1:29,16:45:99:188,0,841	0/1:25,23:48:99:324,0,734	0/1:35,16:51:99:101,0,1049	0/1:28,30:58:99:368,0,823
+1	815853	.	A	G	287.95	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-6.535;DP=148;Dels=0.00;FS=58.139;HaplotypeScore=0.7231;MLEAC=4;MLEAF=0.500;MQ=50.15;MQ0=5;MQRankSum=-9.376;QD=1.95;ReadPosRankSum=3.628	GT:AD:DP:GQ:PL	0/1:21,7:28:31:31,0,626	0/1:21,11:32:85:85,0,654	0/1:30,14:44:74:74,0,940	0/1:29,15:44:99:130,0,882
+1	815857	.	C	T	254.95	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-2.273;DP=141;Dels=0.00;FS=57.911;HaplotypeScore=0.4864;MLEAC=4;MLEAF=0.500;MQ=50.04;MQ0=4;MQRankSum=-9.075;QD=1.81;ReadPosRankSum=3.790	GT:AD:DP:GQ:PL	0/1:21,7:28:29:29,0,645	0/1:21,9:30:58:58,0,637	0/1:28,14:42:92:92,0,860	0/1:28,13:41:99:108,0,815
+1	815873	.	G	T	61.32	LowQD	AC=3;AF=0.375;AN=8;BaseQRankSum=-2.332;DP=140;Dels=0.00;FS=42.926;HaplotypeScore=2.2135;MLEAC=3;MLEAF=0.375;MQ=49.26;MQ0=3;MQRankSum=-8.341;QD=0.55;ReadPosRankSum=0.226	GT:AD:DP:GQ:PL	0/0:23,5:28:4:0,4,681	0/1:20,8:28:34:34,0,615	0/1:31,13:44:54:54,0,931	0/1:31,9:40:4:4,0,941
+1	816636	.	G	A	72.90	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=4.261;DP=159;Dels=0.00;FS=29.630;HaplotypeScore=2.6390;MLEAC=2;MLEAF=0.250;MQ=49.00;MQ0=12;MQRankSum=-6.916;QD=0.95;ReadPosRankSum=0.730	GT:AD:DP:GQ:PL	0/1:24,6:32:58:58,0,464	0/0:36,6:42:61:0,61,854	0/0:33,7:40:35:0,35,879	0/1:29,16:45:49:49,0,657
+1	816638	.	T	C	68.91	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=1.456;DP=156;Dels=0.00;FS=28.839;HaplotypeScore=2.3893;MLEAC=2;MLEAF=0.250;MQ=48.77;MQ0=12;MQRankSum=-6.953;QD=0.91;ReadPosRankSum=0.906	GT:AD:DP:GQ:PL	0/1:26,6:32:50:50,0,559	0/0:36,5:41:59:0,59,896	0/0:32,7:39:29:0,29,935	0/1:28,16:44:53:53,0,721
+1	816642	.	T	C	65.90	LowQD	AC=2;AF=0.250;AN=8;BaseQRankSum=-4.495;DP=156;Dels=0.00;FS=28.269;HaplotypeScore=2.4256;MLEAC=2;MLEAF=0.250;MQ=48.50;MQ0=13;MQRankSum=-6.830;QD=0.88;ReadPosRankSum=1.656	GT:AD:DP:GQ:PL	0/1:25,6:31:49:49,0,645	0/0:33,6:39:50:0,50,812	0/0:35,7:42:38:0,38,1040	0/1:28,16:44:51:51,0,723
+1	816680	.	G	T	188.57	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=7.670;DP=159;Dels=0.00;FS=14.659;HaplotypeScore=14.9001;MLEAC=3;MLEAF=0.375;MQ=44.95;MQ0=15;MQRankSum=-9.145;QD=1.19;ReadPosRankSum=-0.682	GT:AD:DP:GQ:PL	0/1:13,9:26:53:53,0,329	0/1:27,18:49:61:61,0,656	0/1:24,14:43:99:143,0,664	0/1:17,15:41:12:12,0,417
+1	816682	.	G	A	527.94	PASS	AC=4;AF=0.500;AN=8;BaseQRankSum=-0.110;DP=171;Dels=0.00;FS=35.421;HaplotypeScore=16.8926;MLEAC=4;MLEAF=0.500;MQ=44.47;MQ0=14;MQRankSum=-9.751;QD=3.09;ReadPosRankSum=0.034	GT:AD:DP:GQ:PL	0/1:15,12:27:99:143,0,411	0/1:29,20:49:68:68,0,865	0/1:29,15:45:99:124,0,825	0/1:21,29:50:99:225,0,569
+1	816689	.	T	C	32.05	LowQD;LowQual	AC=2;AF=0.250;AN=8;BaseQRankSum=-2.735;DP=212;Dels=0.00;FS=6.264;HaplotypeScore=30.9612;MLEAC=2;MLEAF=0.250;MQ=43.36;MQ0=14;MQRankSum=-2.554;QD=0.26;ReadPosRankSum=-0.661	GT:AD:DP:GQ:PL	0/0:35,2:37:55:0,55,936	0/1:53,7:60:18:18,0,1140	0/0:46,5:51:23:0,23,1209	0/1:57,7:64:48:48,0,1144
+1	816696	.	G	T	206.20	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.290;DP=232;Dels=0.00;FS=0.923;HaplotypeScore=16.5729;MLEAC=4;MLEAF=0.500;MQ=42.94;MQ0=17;MQRankSum=-5.087;QD=0.89;ReadPosRankSum=-1.664	GT:AD:DP:GQ:PL	0/1:32,10:43:99:128,0,700	0/1:52,14:66:10:10,0,1275	0/1:50,6:56:4:4,0,1182	0/1:52,15:67:95:95,0,1103
+1	816697	.	A	T	268.95	LowQD	AC=4;AF=0.500;AN=8;BaseQRankSum=-1.338;DP=232;Dels=0.00;FS=23.133;HaplotypeScore=16.5729;MLEAC=4;MLEAF=0.500;MQ=42.76;MQ0=18;MQRankSum=-4.068;QD=1.16;ReadPosRankSum=-0.146	GT:AD:DP:GQ:PL	0/1:37,6:43:34:34,0,821	0/1:58,8:66:58:58,0,1221	0/1:45,11:56:92:92,0,1052	0/1:54,13:67:99:117,0,1075