bio-twobit 0.2.0 → 0.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (104) hide show
  1. checksums.yaml +4 -4
  2. data/lib/bio/twobit/references/ailmel1.rb +16 -0
  3. data/lib/bio/twobit/references/allmis1.rb +16 -0
  4. data/lib/bio/twobit/references/anocar2.rb +16 -0
  5. data/lib/bio/twobit/references/anogam3.rb +16 -0
  6. data/lib/bio/twobit/references/apimel2.rb +16 -0
  7. data/lib/bio/twobit/references/aplcal1.rb +16 -0
  8. data/lib/bio/twobit/references/aptman1.rb +16 -0
  9. data/lib/bio/twobit/references/aquchr2.rb +16 -0
  10. data/lib/bio/twobit/references/balacu1.rb +16 -0
  11. data/lib/bio/twobit/references/bostau7.rb +16 -0
  12. data/lib/bio/twobit/references/braflo1.rb +16 -0
  13. data/lib/bio/twobit/references/caejap1.rb +16 -0
  14. data/lib/bio/twobit/references/caepb2.rb +16 -0
  15. data/lib/bio/twobit/references/caerem3.rb +16 -0
  16. data/lib/bio/twobit/references/caljac4.rb +16 -0
  17. data/lib/bio/twobit/references/calmil1.rb +16 -0
  18. data/lib/bio/twobit/references/canfam4.rb +16 -0
  19. data/lib/bio/twobit/references/canfam6.rb +16 -0
  20. data/lib/bio/twobit/references/cb3.rb +16 -0
  21. data/lib/bio/twobit/references/ce11.rb +16 -0
  22. data/lib/bio/twobit/references/cersim1.rb +16 -0
  23. data/lib/bio/twobit/references/chlsab2.rb +16 -0
  24. data/lib/bio/twobit/references/chohof1.rb +16 -0
  25. data/lib/bio/twobit/references/chrpic1.rb +16 -0
  26. data/lib/bio/twobit/references/ci2.rb +16 -0
  27. data/lib/bio/twobit/references/crigrichov2.rb +16 -0
  28. data/lib/bio/twobit/references/dasnov3.rb +16 -0
  29. data/lib/bio/twobit/references/dipord1.rb +16 -0
  30. data/lib/bio/twobit/references/dp3.rb +16 -0
  31. data/lib/bio/twobit/references/droana2.rb +16 -0
  32. data/lib/bio/twobit/references/droere1.rb +16 -0
  33. data/lib/bio/twobit/references/drogri1.rb +16 -0
  34. data/lib/bio/twobit/references/dromoj2.rb +16 -0
  35. data/lib/bio/twobit/references/droper1.rb +16 -0
  36. data/lib/bio/twobit/references/drosec1.rb +16 -0
  37. data/lib/bio/twobit/references/drosim1.rb +16 -0
  38. data/lib/bio/twobit/references/drovir2.rb +16 -0
  39. data/lib/bio/twobit/references/droyak2.rb +16 -0
  40. data/lib/bio/twobit/references/ebovir3.rb +16 -0
  41. data/lib/bio/twobit/references/echtel2.rb +16 -0
  42. data/lib/bio/twobit/references/equcab3.rb +16 -0
  43. data/lib/bio/twobit/references/erieur2.rb +16 -0
  44. data/lib/bio/twobit/references/felcat9.rb +16 -0
  45. data/lib/bio/twobit/references/fr2.rb +16 -0
  46. data/lib/bio/twobit/references/gadmor1.rb +16 -0
  47. data/lib/bio/twobit/references/galgal6.rb +16 -0
  48. data/lib/bio/twobit/references/geofor1.rb +16 -0
  49. data/lib/bio/twobit/references/gorgor6.rb +16 -0
  50. data/lib/bio/twobit/references/hetgla2.rb +16 -0
  51. data/lib/bio/twobit/references/latcha1.rb +16 -0
  52. data/lib/bio/twobit/references/loxafr3.rb +16 -0
  53. data/lib/bio/twobit/references/maceug2.rb +16 -0
  54. data/lib/bio/twobit/references/macfas5.rb +16 -0
  55. data/lib/bio/twobit/references/manpen1.rb +16 -0
  56. data/lib/bio/twobit/references/melgal1.rb +16 -0
  57. data/lib/bio/twobit/references/melund1.rb +16 -0
  58. data/lib/bio/twobit/references/micmur2.rb +16 -0
  59. data/lib/bio/twobit/references/mondom5.rb +16 -0
  60. data/lib/bio/twobit/references/myoluc2.rb +16 -0
  61. data/lib/bio/twobit/references/nanpar1.rb +16 -0
  62. data/lib/bio/twobit/references/naslar1.rb +16 -0
  63. data/lib/bio/twobit/references/neosch1.rb +16 -0
  64. data/lib/bio/twobit/references/nomleu3.rb +16 -0
  65. data/lib/bio/twobit/references/ochpri3.rb +16 -0
  66. data/lib/bio/twobit/references/orenil2.rb +16 -0
  67. data/lib/bio/twobit/references/ornana2.rb +16 -0
  68. data/lib/bio/twobit/references/orycun2.rb +16 -0
  69. data/lib/bio/twobit/references/orylat2.rb +16 -0
  70. data/lib/bio/twobit/references/otogar3.rb +16 -0
  71. data/lib/bio/twobit/references/oviari4.rb +16 -0
  72. data/lib/bio/twobit/references/panpan3.rb +16 -0
  73. data/lib/bio/twobit/references/pantro6.rb +16 -0
  74. data/lib/bio/twobit/references/papanu4.rb +16 -0
  75. data/lib/bio/twobit/references/papham1.rb +16 -0
  76. data/lib/bio/twobit/references/petmar3.rb +16 -0
  77. data/lib/bio/twobit/references/ponabe2.rb +16 -0
  78. data/lib/bio/twobit/references/ponabe3.rb +16 -0
  79. data/lib/bio/twobit/references/pripac1.rb +16 -0
  80. data/lib/bio/twobit/references/procap1.rb +16 -0
  81. data/lib/bio/twobit/references/ptevam1.rb +16 -0
  82. data/lib/bio/twobit/references/rhemac10.rb +16 -0
  83. data/lib/bio/twobit/references/rn6.rb +16 -0
  84. data/lib/bio/twobit/references/saccer3.rb +16 -0
  85. data/lib/bio/twobit/references/saibol1.rb +16 -0
  86. data/lib/bio/twobit/references/sarhar1.rb +16 -0
  87. data/lib/bio/twobit/references/sorara2.rb +16 -0
  88. data/lib/bio/twobit/references/spetri2.rb +16 -0
  89. data/lib/bio/twobit/references/strpur2.rb +16 -0
  90. data/lib/bio/twobit/references/susscr11.rb +16 -0
  91. data/lib/bio/twobit/references/taegut2.rb +16 -0
  92. data/lib/bio/twobit/references/tarsyr2.rb +16 -0
  93. data/lib/bio/twobit/references/tetnig2.rb +16 -0
  94. data/lib/bio/twobit/references/thasir1.rb +16 -0
  95. data/lib/bio/twobit/references/triman1.rb +16 -0
  96. data/lib/bio/twobit/references/tupbel1.rb +16 -0
  97. data/lib/bio/twobit/references/turtru2.rb +16 -0
  98. data/lib/bio/twobit/references/uusfur1.rb +16 -0
  99. data/lib/bio/twobit/references/vicpac2.rb +16 -0
  100. data/lib/bio/twobit/references/wuhcor1.rb +16 -0
  101. data/lib/bio/twobit/references/xentro10.rb +16 -0
  102. data/lib/bio/twobit/version.rb +1 -1
  103. data/lib/bio/twobit.rb +2 -16
  104. metadata +103 -3
checksums.yaml CHANGED
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@@ -0,0 +1,16 @@
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AilMel1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "ailMel1"
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+ @metadata.name = "ailMel1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/ailMel1/bigZips/ailMel1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
@@ -0,0 +1,16 @@
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AllMis1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "allMis1"
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+ @metadata.name = "allMis1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/allMis1/bigZips/allMis1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
@@ -0,0 +1,16 @@
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AnoCar2 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "anoCar2"
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+ @metadata.name = "anoCar2"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/anoCar2/bigZips/anoCar2.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AnoGam3 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "anoGam3"
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+ @metadata.name = "anoGam3"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/anoGam3/bigZips/anoGam3.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class ApiMel2 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "apiMel2"
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+ @metadata.name = "apiMel2"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/apiMel2/bigZips/apiMel2.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AplCal1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "aplCal1"
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+ @metadata.name = "aplCal1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/aplCal1/bigZips/aplCal1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AptMan1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "aptMan1"
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+ @metadata.name = "aptMan1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/aptMan1/bigZips/aptMan1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class AquChr2 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "aquChr2"
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+ @metadata.name = "aquChr2"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/aquChr2/bigZips/aquChr2.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class BalAcu1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "balAcu1"
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+ @metadata.name = "balAcu1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/balAcu1/bigZips/balAcu1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class BosTau7 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "bosTau7"
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+ @metadata.name = "bosTau7"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/bosTau7/bigZips/bosTau7.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class BraFlo1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "braFlo1"
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+ @metadata.name = "braFlo1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/braFlo1/bigZips/braFlo1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class CaeJap1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "caeJap1"
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+ @metadata.name = "caeJap1"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/caeJap1/bigZips/caeJap1.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class CaePb2 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "caePb2"
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+ @metadata.name = "caePb2"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/caePb2/bigZips/caePb2.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class CaeRem3 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "caeRem3"
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+ @metadata.name = "caeRem3"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/caeRem3/bigZips/caeRem3.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class CalJac4 < ReferenceGenome
6
+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "calJac4"
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+ @metadata.name = "calJac4"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/calJac4/bigZips/calJac4.2bit"
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+ super(**kwargs)
13
+ end
14
+ end
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+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
4
+ class TwoBit
5
+ class CalMil1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
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+ @metadata.id = "calMil1"
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+ @metadata.name = "calMil1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/calMil1/bigZips/calMil1.2bit"
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+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
5
+ class CanFam4 < ReferenceGenome
6
+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "canFam4"
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+ @metadata.name = "canFam4"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/canFam4/bigZips/canFam4.2bit"
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+ super(**kwargs)
13
+ end
14
+ end
15
+ end
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+ end
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class CanFam6 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "canFam6"
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+ @metadata.name = "canFam6"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/canFam6/bigZips/canFam6.2bit"
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+ super(**kwargs)
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+ end
14
+ end
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+ end
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+ end
@@ -0,0 +1,16 @@
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class Cb3 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "cb3"
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+ @metadata.name = "cb3"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/cb3/bigZips/cb3.2bit"
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+ super(**kwargs)
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+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class Ce11 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
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+ @metadata.id = "ce11"
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+ @metadata.name = "ce11"
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+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/ce11/bigZips/ce11.2bit"
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+ super(**kwargs)
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+ end
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+ end
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+ end
16
+ end
@@ -0,0 +1,16 @@
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+ require_relative "../reference_genome"
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+
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+ module Bio
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+ class TwoBit
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+ class CerSim1 < ReferenceGenome
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+ def initialize(**kwargs)
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+ @metadata = Metadata.new
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+ @metadata.id = "cerSim1"
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+ @metadata.name = "cerSim1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/cerSim1/bigZips/cerSim1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class ChlSab2 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "chlSab2"
9
+ @metadata.name = "chlSab2"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/chlSab2/bigZips/chlSab2.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class ChoHof1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "choHof1"
9
+ @metadata.name = "choHof1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/choHof1/bigZips/choHof1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class ChrPic1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "chrPic1"
9
+ @metadata.name = "chrPic1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/chrPic1/bigZips/chrPic1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class Ci2 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "ci2"
9
+ @metadata.name = "ci2"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/ci2/bigZips/ci2.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class CriGriChoV2 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "criGriChoV2"
9
+ @metadata.name = "criGriChoV2"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/bigZips/criGriChoV2.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DasNov3 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "dasNov3"
9
+ @metadata.name = "dasNov3"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/dasNov3/bigZips/dasNov3.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DipOrd1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "dipOrd1"
9
+ @metadata.name = "dipOrd1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/dipOrd1/bigZips/dipOrd1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class Dp3 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "dp3"
9
+ @metadata.name = "dp3"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/dp3/bigZips/dp3.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroAna2 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droAna2"
9
+ @metadata.name = "droAna2"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droAna2/bigZips/droAna2.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroEre1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droEre1"
9
+ @metadata.name = "droEre1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droEre1/bigZips/droEre1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroGri1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droGri1"
9
+ @metadata.name = "droGri1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droGri1/bigZips/droGri1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroMoj2 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droMoj2"
9
+ @metadata.name = "droMoj2"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droMoj2/bigZips/droMoj2.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroPer1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droPer1"
9
+ @metadata.name = "droPer1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droPer1/bigZips/droPer1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroSec1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droSec1"
9
+ @metadata.name = "droSec1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droSec1/bigZips/droSec1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ require_relative "../reference_genome"
2
+
3
+ module Bio
4
+ class TwoBit
5
+ class DroSim1 < ReferenceGenome
6
+ def initialize(**kwargs)
7
+ @metadata = Metadata.new
8
+ @metadata.id = "droSim1"
9
+ @metadata.name = "droSim1"
10
+ @metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
11
+ @data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droSim1/bigZips/droSim1.2bit"
12
+ super(**kwargs)
13
+ end
14
+ end
15
+ end
16
+ end