bio-twobit 0.2.0 → 0.2.1
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- checksums.yaml +4 -4
- data/lib/bio/twobit/references/ailmel1.rb +16 -0
- data/lib/bio/twobit/references/allmis1.rb +16 -0
- data/lib/bio/twobit/references/anocar2.rb +16 -0
- data/lib/bio/twobit/references/anogam3.rb +16 -0
- data/lib/bio/twobit/references/apimel2.rb +16 -0
- data/lib/bio/twobit/references/aplcal1.rb +16 -0
- data/lib/bio/twobit/references/aptman1.rb +16 -0
- data/lib/bio/twobit/references/aquchr2.rb +16 -0
- data/lib/bio/twobit/references/balacu1.rb +16 -0
- data/lib/bio/twobit/references/bostau7.rb +16 -0
- data/lib/bio/twobit/references/braflo1.rb +16 -0
- data/lib/bio/twobit/references/caejap1.rb +16 -0
- data/lib/bio/twobit/references/caepb2.rb +16 -0
- data/lib/bio/twobit/references/caerem3.rb +16 -0
- data/lib/bio/twobit/references/caljac4.rb +16 -0
- data/lib/bio/twobit/references/calmil1.rb +16 -0
- data/lib/bio/twobit/references/canfam4.rb +16 -0
- data/lib/bio/twobit/references/canfam6.rb +16 -0
- data/lib/bio/twobit/references/cb3.rb +16 -0
- data/lib/bio/twobit/references/ce11.rb +16 -0
- data/lib/bio/twobit/references/cersim1.rb +16 -0
- data/lib/bio/twobit/references/chlsab2.rb +16 -0
- data/lib/bio/twobit/references/chohof1.rb +16 -0
- data/lib/bio/twobit/references/chrpic1.rb +16 -0
- data/lib/bio/twobit/references/ci2.rb +16 -0
- data/lib/bio/twobit/references/crigrichov2.rb +16 -0
- data/lib/bio/twobit/references/dasnov3.rb +16 -0
- data/lib/bio/twobit/references/dipord1.rb +16 -0
- data/lib/bio/twobit/references/dp3.rb +16 -0
- data/lib/bio/twobit/references/droana2.rb +16 -0
- data/lib/bio/twobit/references/droere1.rb +16 -0
- data/lib/bio/twobit/references/drogri1.rb +16 -0
- data/lib/bio/twobit/references/dromoj2.rb +16 -0
- data/lib/bio/twobit/references/droper1.rb +16 -0
- data/lib/bio/twobit/references/drosec1.rb +16 -0
- data/lib/bio/twobit/references/drosim1.rb +16 -0
- data/lib/bio/twobit/references/drovir2.rb +16 -0
- data/lib/bio/twobit/references/droyak2.rb +16 -0
- data/lib/bio/twobit/references/ebovir3.rb +16 -0
- data/lib/bio/twobit/references/echtel2.rb +16 -0
- data/lib/bio/twobit/references/equcab3.rb +16 -0
- data/lib/bio/twobit/references/erieur2.rb +16 -0
- data/lib/bio/twobit/references/felcat9.rb +16 -0
- data/lib/bio/twobit/references/fr2.rb +16 -0
- data/lib/bio/twobit/references/gadmor1.rb +16 -0
- data/lib/bio/twobit/references/galgal6.rb +16 -0
- data/lib/bio/twobit/references/geofor1.rb +16 -0
- data/lib/bio/twobit/references/gorgor6.rb +16 -0
- data/lib/bio/twobit/references/hetgla2.rb +16 -0
- data/lib/bio/twobit/references/latcha1.rb +16 -0
- data/lib/bio/twobit/references/loxafr3.rb +16 -0
- data/lib/bio/twobit/references/maceug2.rb +16 -0
- data/lib/bio/twobit/references/macfas5.rb +16 -0
- data/lib/bio/twobit/references/manpen1.rb +16 -0
- data/lib/bio/twobit/references/melgal1.rb +16 -0
- data/lib/bio/twobit/references/melund1.rb +16 -0
- data/lib/bio/twobit/references/micmur2.rb +16 -0
- data/lib/bio/twobit/references/mondom5.rb +16 -0
- data/lib/bio/twobit/references/myoluc2.rb +16 -0
- data/lib/bio/twobit/references/nanpar1.rb +16 -0
- data/lib/bio/twobit/references/naslar1.rb +16 -0
- data/lib/bio/twobit/references/neosch1.rb +16 -0
- data/lib/bio/twobit/references/nomleu3.rb +16 -0
- data/lib/bio/twobit/references/ochpri3.rb +16 -0
- data/lib/bio/twobit/references/orenil2.rb +16 -0
- data/lib/bio/twobit/references/ornana2.rb +16 -0
- data/lib/bio/twobit/references/orycun2.rb +16 -0
- data/lib/bio/twobit/references/orylat2.rb +16 -0
- data/lib/bio/twobit/references/otogar3.rb +16 -0
- data/lib/bio/twobit/references/oviari4.rb +16 -0
- data/lib/bio/twobit/references/panpan3.rb +16 -0
- data/lib/bio/twobit/references/pantro6.rb +16 -0
- data/lib/bio/twobit/references/papanu4.rb +16 -0
- data/lib/bio/twobit/references/papham1.rb +16 -0
- data/lib/bio/twobit/references/petmar3.rb +16 -0
- data/lib/bio/twobit/references/ponabe2.rb +16 -0
- data/lib/bio/twobit/references/ponabe3.rb +16 -0
- data/lib/bio/twobit/references/pripac1.rb +16 -0
- data/lib/bio/twobit/references/procap1.rb +16 -0
- data/lib/bio/twobit/references/ptevam1.rb +16 -0
- data/lib/bio/twobit/references/rhemac10.rb +16 -0
- data/lib/bio/twobit/references/rn6.rb +16 -0
- data/lib/bio/twobit/references/saccer3.rb +16 -0
- data/lib/bio/twobit/references/saibol1.rb +16 -0
- data/lib/bio/twobit/references/sarhar1.rb +16 -0
- data/lib/bio/twobit/references/sorara2.rb +16 -0
- data/lib/bio/twobit/references/spetri2.rb +16 -0
- data/lib/bio/twobit/references/strpur2.rb +16 -0
- data/lib/bio/twobit/references/susscr11.rb +16 -0
- data/lib/bio/twobit/references/taegut2.rb +16 -0
- data/lib/bio/twobit/references/tarsyr2.rb +16 -0
- data/lib/bio/twobit/references/tetnig2.rb +16 -0
- data/lib/bio/twobit/references/thasir1.rb +16 -0
- data/lib/bio/twobit/references/triman1.rb +16 -0
- data/lib/bio/twobit/references/tupbel1.rb +16 -0
- data/lib/bio/twobit/references/turtru2.rb +16 -0
- data/lib/bio/twobit/references/uusfur1.rb +16 -0
- data/lib/bio/twobit/references/vicpac2.rb +16 -0
- data/lib/bio/twobit/references/wuhcor1.rb +16 -0
- data/lib/bio/twobit/references/xentro10.rb +16 -0
- data/lib/bio/twobit/version.rb +1 -1
- data/lib/bio/twobit.rb +2 -16
- metadata +103 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
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---
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SHA256:
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-
metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: 282b812f7b55d934e778230bb37538957b829ec5e1679c32e02e4c13b65fb059
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4
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+
data.tar.gz: f165180e9b65b5d38f6c65ad9ea93ca822cc97c0d636831fb49e25ae5d29845f
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5
5
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SHA512:
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metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: 2049079d59f1a5bd5dcab46f7b274574465928074c047069c136440c6339f9af18c6be9752244f1ec430f0bec5f4e8fd17bae4239c7d0f0a5468d4c9cc4527db
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7
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+
data.tar.gz: 5fea9f7f374c4cfb791afa639b02e1e49783889ea78323250cf4db10dd0ac06c7a02829e1b0451c1147b53caf61dea66c1971edccccd819a3bdfd06f21f61a21
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@@ -0,0 +1,16 @@
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AilMel1 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "ailMel1"
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9
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@metadata.name = "ailMel1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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11
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/ailMel1/bigZips/ailMel1.2bit"
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super(**kwargs)
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end
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end
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end
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16
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end
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@@ -0,0 +1,16 @@
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AllMis1 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "allMis1"
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@metadata.name = "allMis1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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11
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/allMis1/bigZips/allMis1.2bit"
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super(**kwargs)
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end
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end
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end
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16
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AnoCar2 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "anoCar2"
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@metadata.name = "anoCar2"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/anoCar2/bigZips/anoCar2.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AnoGam3 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "anoGam3"
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@metadata.name = "anoGam3"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/anoGam3/bigZips/anoGam3.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class ApiMel2 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "apiMel2"
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@metadata.name = "apiMel2"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/apiMel2/bigZips/apiMel2.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AplCal1 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "aplCal1"
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@metadata.name = "aplCal1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/aplCal1/bigZips/aplCal1.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AptMan1 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "aptMan1"
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@metadata.name = "aptMan1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/aptMan1/bigZips/aptMan1.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class AquChr2 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "aquChr2"
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@metadata.name = "aquChr2"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/aquChr2/bigZips/aquChr2.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class BalAcu1 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "balAcu1"
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@metadata.name = "balAcu1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/balAcu1/bigZips/balAcu1.2bit"
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super(**kwargs)
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class BosTau7 < ReferenceGenome
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def initialize(**kwargs)
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7
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@metadata = Metadata.new
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@metadata.id = "bosTau7"
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@metadata.name = "bosTau7"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/bosTau7/bigZips/bosTau7.2bit"
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super(**kwargs)
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13
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class BraFlo1 < ReferenceGenome
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def initialize(**kwargs)
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7
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@metadata = Metadata.new
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@metadata.id = "braFlo1"
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@metadata.name = "braFlo1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/braFlo1/bigZips/braFlo1.2bit"
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super(**kwargs)
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13
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end
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end
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end
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class CaeJap1 < ReferenceGenome
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def initialize(**kwargs)
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7
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@metadata = Metadata.new
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@metadata.id = "caeJap1"
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@metadata.name = "caeJap1"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/caeJap1/bigZips/caeJap1.2bit"
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super(**kwargs)
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13
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end
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14
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end
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end
|
16
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end
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class CaePb2 < ReferenceGenome
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def initialize(**kwargs)
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@metadata = Metadata.new
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@metadata.id = "caePb2"
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@metadata.name = "caePb2"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/caePb2/bigZips/caePb2.2bit"
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super(**kwargs)
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13
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end
|
14
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end
|
15
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end
|
16
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end
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@@ -0,0 +1,16 @@
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require_relative "../reference_genome"
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module Bio
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class TwoBit
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class CaeRem3 < ReferenceGenome
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6
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def initialize(**kwargs)
|
7
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@metadata = Metadata.new
|
8
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@metadata.id = "caeRem3"
|
9
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@metadata.name = "caeRem3"
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@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
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@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/caeRem3/bigZips/caeRem3.2bit"
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super(**kwargs)
|
13
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end
|
14
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end
|
15
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end
|
16
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end
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@@ -0,0 +1,16 @@
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require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class CalJac4 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "calJac4"
|
9
|
+
@metadata.name = "calJac4"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/calJac4/bigZips/calJac4.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class CalMil1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "calMil1"
|
9
|
+
@metadata.name = "calMil1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/calMil1/bigZips/calMil1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class CanFam4 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "canFam4"
|
9
|
+
@metadata.name = "canFam4"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/canFam4/bigZips/canFam4.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class CanFam6 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "canFam6"
|
9
|
+
@metadata.name = "canFam6"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/canFam6/bigZips/canFam6.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class Cb3 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "cb3"
|
9
|
+
@metadata.name = "cb3"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/cb3/bigZips/cb3.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class Ce11 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "ce11"
|
9
|
+
@metadata.name = "ce11"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/ce11/bigZips/ce11.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class CerSim1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "cerSim1"
|
9
|
+
@metadata.name = "cerSim1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/cerSim1/bigZips/cerSim1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class ChlSab2 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "chlSab2"
|
9
|
+
@metadata.name = "chlSab2"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/chlSab2/bigZips/chlSab2.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class ChoHof1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "choHof1"
|
9
|
+
@metadata.name = "choHof1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/choHof1/bigZips/choHof1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class ChrPic1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "chrPic1"
|
9
|
+
@metadata.name = "chrPic1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/chrPic1/bigZips/chrPic1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class Ci2 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "ci2"
|
9
|
+
@metadata.name = "ci2"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/ci2/bigZips/ci2.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class CriGriChoV2 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "criGriChoV2"
|
9
|
+
@metadata.name = "criGriChoV2"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/criGriChoV2/bigZips/criGriChoV2.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DasNov3 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "dasNov3"
|
9
|
+
@metadata.name = "dasNov3"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/dasNov3/bigZips/dasNov3.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DipOrd1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "dipOrd1"
|
9
|
+
@metadata.name = "dipOrd1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/dipOrd1/bigZips/dipOrd1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class Dp3 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "dp3"
|
9
|
+
@metadata.name = "dp3"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/dp3/bigZips/dp3.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroAna2 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droAna2"
|
9
|
+
@metadata.name = "droAna2"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droAna2/bigZips/droAna2.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroEre1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droEre1"
|
9
|
+
@metadata.name = "droEre1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droEre1/bigZips/droEre1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroGri1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droGri1"
|
9
|
+
@metadata.name = "droGri1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droGri1/bigZips/droGri1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroMoj2 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droMoj2"
|
9
|
+
@metadata.name = "droMoj2"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droMoj2/bigZips/droMoj2.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroPer1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droPer1"
|
9
|
+
@metadata.name = "droPer1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droPer1/bigZips/droPer1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroSec1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droSec1"
|
9
|
+
@metadata.name = "droSec1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droSec1/bigZips/droSec1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|
@@ -0,0 +1,16 @@
|
|
1
|
+
require_relative "../reference_genome"
|
2
|
+
|
3
|
+
module Bio
|
4
|
+
class TwoBit
|
5
|
+
class DroSim1 < ReferenceGenome
|
6
|
+
def initialize(**kwargs)
|
7
|
+
@metadata = Metadata.new
|
8
|
+
@metadata.id = "droSim1"
|
9
|
+
@metadata.name = "droSim1"
|
10
|
+
@metadata.url = "https://hgdownload.soe.ucsc.edu/downloads.html"
|
11
|
+
@data_url = "https://hgdownload.soe.ucsc.edu/goldenPath/droSim1/bigZips/droSim1.2bit"
|
12
|
+
super(**kwargs)
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
end
|