bio-table 0.0.4 → 0.0.5
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- data/README.md +85 -22
- data/VERSION +1 -1
- data/bin/bio-table +45 -18
- data/features/cli.feature +11 -1
- data/lib/bio-table.rb +1 -0
- data/lib/bio-table/filter.rb +2 -1
- data/lib/bio-table/formatter.rb +19 -1
- data/lib/bio-table/rdf.rb +106 -0
- data/lib/bio-table/table_apply.rb +10 -2
- data/lib/bio-table/tableload.rb +8 -4
- data/lib/bio-table/tablerow.rb +2 -1
- data/lib/bio-table/tablewriter.rb +1 -1
- data/test/data/regression/table1-STDIN.ref +1138 -0
- data/test/data/regression/table1-columns-indexed.ref +0 -2
- data/test/data/regression/table1-columns-regex.ref +0 -2
- data/test/data/regression/table1-columns.ref +0 -2
- data/test/data/regression/table1-rdf1.ref +415 -0
- metadata +24 -21
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: bio-table
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.0.
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4
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+
version: 0.0.5
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5
5
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prerelease:
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6
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platform: ruby
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7
7
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authors:
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@@ -9,11 +9,11 @@ authors:
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9
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autorequire:
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bindir: bin
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11
11
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cert_chain: []
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12
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-
date: 2012-
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12
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+
date: 2012-08-14 00:00:00.000000000Z
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dependencies:
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14
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- !ruby/object:Gem::Dependency
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15
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name: bio-logger
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-
requirement: &
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+
requirement: &14291180 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -21,10 +21,10 @@ dependencies:
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version: '0'
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type: :runtime
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prerelease: false
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24
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-
version_requirements: *
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24
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+
version_requirements: *14291180
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25
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- !ruby/object:Gem::Dependency
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26
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name: rspec
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-
requirement: &
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+
requirement: &14290640 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -32,10 +32,10 @@ dependencies:
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version: 2.8.0
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type: :development
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prerelease: false
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35
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-
version_requirements: *
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35
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+
version_requirements: *14290640
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- !ruby/object:Gem::Dependency
|
37
37
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name: rdoc
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38
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-
requirement: &
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38
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+
requirement: &14290140 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ~>
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@@ -43,10 +43,10 @@ dependencies:
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version: '3.12'
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type: :development
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45
45
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prerelease: false
|
46
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-
version_requirements: *
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46
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+
version_requirements: *14290140
|
47
47
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- !ruby/object:Gem::Dependency
|
48
48
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name: cucumber
|
49
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-
requirement: &
|
49
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+
requirement: &14289640 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -54,10 +54,10 @@ dependencies:
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54
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version: '0'
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55
55
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type: :development
|
56
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|
prerelease: false
|
57
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-
version_requirements: *
|
57
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+
version_requirements: *14289640
|
58
58
|
- !ruby/object:Gem::Dependency
|
59
59
|
name: bundler
|
60
|
-
requirement: &
|
60
|
+
requirement: &14289120 !ruby/object:Gem::Requirement
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none: false
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62
62
|
requirements:
|
63
63
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- - ! '>'
|
@@ -65,10 +65,10 @@ dependencies:
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65
65
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version: 1.0.0
|
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type: :development
|
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prerelease: false
|
68
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-
version_requirements: *
|
68
|
+
version_requirements: *14289120
|
69
69
|
- !ruby/object:Gem::Dependency
|
70
70
|
name: jeweler
|
71
|
-
requirement: &
|
71
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+
requirement: &14288640 !ruby/object:Gem::Requirement
|
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72
|
none: false
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73
73
|
requirements:
|
74
74
|
- - ~>
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@@ -76,10 +76,10 @@ dependencies:
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76
76
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version: 1.8.3
|
77
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type: :development
|
78
78
|
prerelease: false
|
79
|
-
version_requirements: *
|
79
|
+
version_requirements: *14288640
|
80
80
|
- !ruby/object:Gem::Dependency
|
81
81
|
name: bio
|
82
|
-
requirement: &
|
82
|
+
requirement: &14288120 !ruby/object:Gem::Requirement
|
83
83
|
none: false
|
84
84
|
requirements:
|
85
85
|
- - ! '>='
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@@ -87,10 +87,10 @@ dependencies:
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87
87
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version: 1.4.2
|
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type: :development
|
89
89
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prerelease: false
|
90
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-
version_requirements: *
|
90
|
+
version_requirements: *14288120
|
91
91
|
- !ruby/object:Gem::Dependency
|
92
92
|
name: rdoc
|
93
|
-
requirement: &
|
93
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+
requirement: &14287620 !ruby/object:Gem::Requirement
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94
94
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none: false
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95
95
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requirements:
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96
96
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- - ~>
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@@ -98,10 +98,10 @@ dependencies:
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98
98
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version: '3.12'
|
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99
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type: :development
|
100
100
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prerelease: false
|
101
|
-
version_requirements: *
|
101
|
+
version_requirements: *14287620
|
102
102
|
- !ruby/object:Gem::Dependency
|
103
103
|
name: regressiontest
|
104
|
-
requirement: &
|
104
|
+
requirement: &14287100 !ruby/object:Gem::Requirement
|
105
105
|
none: false
|
106
106
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requirements:
|
107
107
|
- - ! '>='
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@@ -109,7 +109,7 @@ dependencies:
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109
109
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version: '0'
|
110
110
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type: :development
|
111
111
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prerelease: false
|
112
|
-
version_requirements: *
|
112
|
+
version_requirements: *14287100
|
113
113
|
description: Functions and tools for tranforming and changing tab delimited and comma
|
114
114
|
separated table files - useful for Excel sheets and SQL/RDF output
|
115
115
|
email: pjotr.public01@thebird.nl
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@@ -146,6 +146,7 @@ files:
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146
146
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- lib/bio-table/merge.rb
|
147
147
|
- lib/bio-table/overlap.rb
|
148
148
|
- lib/bio-table/parser.rb
|
149
|
+
- lib/bio-table/rdf.rb
|
149
150
|
- lib/bio-table/rewrite.rb
|
150
151
|
- lib/bio-table/table.rb
|
151
152
|
- lib/bio-table/table_apply.rb
|
@@ -159,9 +160,11 @@ files:
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|
159
160
|
- test/data/input/table1.csv
|
160
161
|
- test/data/input/table2.csv
|
161
162
|
- test/data/regression/table1-0_05.ref
|
163
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+
- test/data/regression/table1-STDIN.ref
|
162
164
|
- test/data/regression/table1-columns-indexed.ref
|
163
165
|
- test/data/regression/table1-columns-regex.ref
|
164
166
|
- test/data/regression/table1-columns.ref
|
167
|
+
- test/data/regression/table1-rdf1.ref
|
165
168
|
- test/data/regression/table1-rewrite-rownames.ref
|
166
169
|
homepage: http://github.com/pjotrp/bioruby-table
|
167
170
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licenses:
|
@@ -178,7 +181,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
178
181
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version: '0'
|
179
182
|
segments:
|
180
183
|
- 0
|
181
|
-
hash:
|
184
|
+
hash: -3323394519404685763
|
182
185
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
183
186
|
none: false
|
184
187
|
requirements:
|