bio-table 0.0.3 → 0.0.4
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- data/Gemfile +1 -0
- data/README.md +33 -13
- data/VERSION +1 -1
- data/features/cli.feature +31 -0
- data/features/step_definitions/cli-feature.rb +12 -0
- data/features/support/env.rb +4 -0
- data/test/data/regression/table1-0_05.ref +285 -0
- data/test/data/regression/table1-columns-indexed.ref +761 -0
- data/test/data/regression/table1-columns-regex.ref +761 -0
- data/test/data/regression/table1-columns.ref +761 -0
- data/test/data/regression/table1-rewrite-rownames.ref +759 -0
- metadata +37 -19
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285
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292
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293
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294
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295
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297
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307
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309
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310
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109314 0 0 0 0 0
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311
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109323 0 0 0 0 0
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312
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109332 0.14 0.6 0.08 0.05 0.08
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314
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315
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316
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317
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109349 0 0 0 0 0
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318
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320
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109575 0 0.14 0 0.15 0
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321
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109593 0 0 0 0 0
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322
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109594 1.44 0.09 0.29 0.46 0.1
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323
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109624 0.24 0.36 0.06 0.13 0.21
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324
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325
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326
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109652 0.6 0.94 0.88 0.05 0.56
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327
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109658 20.9 22.42 22.98 15.98 23.68
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328
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109660 0 0.13 0.1 0 0
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329
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109663 0 0 0 0.1 0
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330
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109672 128.29 185.07 168.71 156.6 133.13
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331
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109674 12.64 17 13.13 11.98 16.98
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332
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333
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334
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109689 35.64 38.11 36.28 22.59 40.58
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335
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109697 0 0 0 0 0
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336
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109700 0.06 0.01 0 0.06 0.1
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346
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109821 0 0 0 0 0
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347
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349
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109889 0.22 0.12 0.07 0.04 0.01
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350
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351
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352
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109904 0 0.02 0 0 0
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353
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355
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109929 4.39 4.38 3.58 3.95 2.97
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109979 0 0.13 0 0 0.08
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359
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110006 260.06 266.38 294.57 343.95 385.59
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360
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110012 33.61 30.84 42.56 45.57 32.89
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361
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110033 32.09 17.51 22.16 10.29 22.17
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374
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379
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110187 0 0 0 0 0
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380
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110196 11.21 13.07 27.98 16.57 12.76
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381
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NA NA NA NA NA NA
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382
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105853 0.06 0 0 0 0
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383
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105855 236.88 255.2 213.95 253.49 231.56
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384
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105866 0 0 0 0 0
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386
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387
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105892 0 0 0 0 0
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388
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105988 10.04 6.26 4.09 2.36 6.46
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389
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106014 0 0 0 0.07 0.04
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390
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106021 16.25 17.98 17.89 14.31 18.06
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391
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106025 17.34 22.93 32.29 32.94 25.76
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392
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393
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106042 0 0 0.07 0 0
|
394
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106052 2.99 3.78 4.46 5.97 3.54
|
395
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|
396
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106068 9.65 6.8 6.98 4.19 10.21
|
397
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106073 79.34 73.15 71.02 88.43 60.73
|
398
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106143 30.3 29.14 31.47 31.96 29.9
|
399
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106200 4.35 9.58 8.51 9.56 9.47
|
400
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106205 3.38 5.12 5.31 4.16 6.74
|
401
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106248 2.67 3.34 2.84 3.44 2.36
|
402
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106298 26.04 24.66 23.15 26.91 23.4
|
403
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106326 14.8 14.67 17.73 14.36 19.6
|
404
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106338 3.05 7.11 6.3 4.74 5.18
|
405
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106344 20.03 16.24 23.33 16.5 16.02
|
406
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106347 0.06 0 0 0 0
|
407
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106369 0.01 0.37 0.36 0.27 0.25
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408
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106389 0 0.03 0.29 0.06 0.07
|
409
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106393 0.59 0.84 1.07 0.39 0.75
|
410
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106407 0 0.07 0 0 0.04
|
411
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106489 3.87 5.24 8.98 10.6 7.65
|
412
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106504 41.59 40.67 36.19 32.53 41.17
|
413
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106512 89.47 90.04 83.36 73.22 82.24
|
414
|
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106522 0 0.05 0.72 0.62 1.01
|
415
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106529 64.28 72.99 87.5 79.73 76.33
|
416
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106557 0.13 0.11 0.21 0.06 0
|
417
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106564 6.8 6.45 8.23 9.86 5.61
|
418
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106565 0.11 0.06 0 0 0
|
419
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106572 6.5 8.61 13.62 10.9 10.67
|
420
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106581 45.11 48.63 48.54 44.17 61.54
|
421
|
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106582 41.42 16.95 25.63 17.04 22.98
|
422
|
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106585 4.46 4.43 3.99 2.83 5.66
|
423
|
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106628 19.69 19.01 23.29 20.98 18.84
|
424
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106633 4.19 5.14 3.65 2.62 4.95
|
425
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106639 1.92 1.4 3.78 2.57 1.84
|
426
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106648 0 0 0 0 0
|
427
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106672 76.8 83.73 108.36 142.49 65.62
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428
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106707 6.26 9.12 9.03 8.49 7.95
|
429
|
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106722 0 0 0 0 0
|
430
|
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106759 12.28 9.62 8.53 10.99 12.95
|
431
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106766 0 0.12 0.33 0.04 0.1
|
432
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106794 1.79 3.25 2.23 1.68 2.85
|
433
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106795 28.25 9.16 16.51 6.52 14.99
|
434
|
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106821 15.07 11.32 20.94 12.15 9.12
|
435
|
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106840 10.89 8.76 9.68 11.4 8.3
|
436
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106861 0.19 3.01 1.03 0.82 0.89
|
437
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106869 28.94 31.26 60.85 51.88 39.34
|
438
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106877 0.3 0.19 0.79 0.46 1.08
|
439
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106878 11.95 11.88 16.36 20.44 9.5
|
440
|
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106894 8.03 8.44 7.12 6.38 9.23
|
441
|
+
106931 0.58 1.67 1.16 0.68 0.86
|
442
|
+
106947 19.18 16.98 19.01 22.37 16.1
|
443
|
+
106952 16.71 19.18 15.74 7.31 14.25
|
444
|
+
106957 39.27 46.61 41.28 54.75 41.57
|
445
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107022 8.21 6.85 5.47 6.24 4.36
|
446
|
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107029 38.85 35.15 36.9 37.39 26.15
|
447
|
+
107035 14.94 16.82 15.02 13.82 17.93
|
448
|
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107045 36.05 31.35 26.63 24.46 29.09
|
449
|
+
107047 14.49 17.49 23.24 21.75 12.76
|
450
|
+
107065 0 0.03 0 0 0
|
451
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+
107071 26.85 36.22 44.77 48.85 31.86
|
452
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107094 13.24 11.91 12.73 11.65 12.9
|
453
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107141 0 0 0 0 0
|
454
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107146 0 0 0 0 0
|
455
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107173 10.97 7.87 15.44 17.16 10.14
|
456
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107182 7.67 9.39 8.66 6.9 9.7
|
457
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107221 0 0.19 0.14 0 0.22
|
458
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+
107227 4.13 3.75 6.13 5.11 4.26
|
459
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+
107242 19.02 10.36 23.29 23.09 20.26
|
460
|
+
107250 0.27 0.17 0.25 0.6 0.32
|
461
|
+
107260 70.72 63.84 74.34 88.56 64.52
|
462
|
+
107271 36.54 33.22 32.87 29.47 30.2
|
463
|
+
107272 51.98 33.2 36.97 36.85 32.32
|
464
|
+
107305 15.57 20.06 20.74 19.51 20.96
|
465
|
+
107321 232.51 278.82 289.34 332.03 225.35
|
466
|
+
107328 0.92 1.34 0.75 1.42 1.15
|
467
|
+
107338 10.01 11.18 9 6.97 11.71
|
468
|
+
107351 0.28 0.02 0 0.18 0
|
469
|
+
107358 59.93 54.93 61.44 55.84 44.12
|
470
|
+
107368 8.56 9.08 7.45 6.15 8.16
|
471
|
+
107371 14.63 13.66 15 11.09 14.02
|
472
|
+
107373 82.99 64.81 64.13 48.27 68.24
|
473
|
+
107375 12.9 18.21 25.14 21.88 17.9
|
474
|
+
107392 62.54 58.3 78.07 76.14 55.7
|
475
|
+
107435 53.6 35.59 52.17 37.38 43.31
|
476
|
+
107448 0.23 0.21 0.38 0.25 0.73
|
477
|
+
107449 0.23 0.5 0.36 0.31 0.44
|
478
|
+
107476 0.66 1.21 1.2 0.8 1.65
|
479
|
+
107477 0.31 0.18 0.12 0.08 0.31
|
480
|
+
107503 37.71 43.18 45.46 46.48 40.85
|
481
|
+
107508 46.77 44.64 29.21 18.72 43.31
|
482
|
+
107513 33.65 29.15 32.06 35.27 27.6
|
483
|
+
107515 0.16 0.19 0.17 0.15 0.04
|
484
|
+
107526 0 0 0 0 0
|
485
|
+
107527 0.38 0.65 0.12 0.28 0.19
|
486
|
+
107528 3.23 3.04 3.56 3.12 3.79
|
487
|
+
107566 41.4 34.96 34.72 39.66 34.44
|
488
|
+
107568 19.96 19.18 36.9 28.82 36.21
|
489
|
+
107569 23.69 32.36 23.18 28.22 28.75
|
490
|
+
107581 0 0.02 0 0 0
|
491
|
+
107585 0 0 0 0 0
|
492
|
+
107586 0 0.08 0 0 0
|
493
|
+
107587 0 0 0 0 0
|
494
|
+
107589 0.3 0.16 0.12 0.03 0.18
|
495
|
+
107605 0 0 0.09 0 0.03
|
496
|
+
107607 0.63 1.35 0.63 0.44 2.18
|
497
|
+
107650 13.06 14.49 13.8 13.06 14.31
|
498
|
+
107652 17.52 11.44 15.73 10.53 16.46
|
499
|
+
107656 0 0 0 0 0
|
500
|
+
107684 27.95 26.47 55.26 43.92 74.39
|
501
|
+
107686 48.89 55.04 71.74 92.77 57.48
|
502
|
+
107701 16.73 20.77 18 18 16.13
|
503
|
+
107702 851.76 1295.64 1309.25 1847.55 872.11
|
504
|
+
107723 23.52 18.81 19.73 16.35 25.3
|
505
|
+
107732 45.11 27.36 29.72 36.36 34.91
|
506
|
+
107733 5 4.64 9.35 8.95 5.99
|
507
|
+
107734 74.61 82.27 102.03 109.47 80.82
|
508
|
+
107746 38.1 34.5 26.38 24.3 32.95
|
509
|
+
107747 4.12 5.32 7.84 5.97 10.06
|
510
|
+
107751 0 0 0 0 0
|
511
|
+
107753 0 0.18 0 0 0
|
512
|
+
107765 0 0 0 0 0
|
513
|
+
107766 7.19 7.96 5.4 5.69 3.36
|
514
|
+
107767 8.46 12.17 12.72 10.61 9.78
|
515
|
+
107769 68.27 39.58 73.29 56.09 62.83
|
516
|
+
107770 0 0 0 0.08 0
|
517
|
+
107771 15.59 12.45 20.2 19.06 17.16
|
518
|
+
107815 0.12 0.07 0.2 0.07 0.1
|
519
|
+
107817 12.05 15.64 20.4 16.67 14.12
|
520
|
+
107823 35.4 38.13 28.25 15.23 32.73
|
521
|
+
107829 28.83 36.88 34.35 32.68 30.28
|
522
|
+
107831 0 0 0 0 0
|
523
|
+
107849 0 0 0 0 0
|
524
|
+
107868 0 0 0 0 0
|
525
|
+
107869 0.43 0.21 0.15 0.22 0.11
|
526
|
+
107885 3.5 6.85 8.13 8.2 5.43
|
527
|
+
107889 0 0.48 0 0.03 0
|
528
|
+
107895 6.92 7.95 8.68 5.69 12.1
|
529
|
+
107932 68.86 55.81 39.62 25.63 67.73
|
530
|
+
107934 0.09 0.13 0.22 0.16 0.24
|
531
|
+
107939 12.56 9.56 8.44 7.71 10.2
|
532
|
+
107951 22.44 24.2 24.43 27.36 24.11
|
533
|
+
107970 0 0 0 0 0
|
534
|
+
107971 0.19 0.32 0.52 0.14 0.18
|
535
|
+
107975 10.53 9.15 8.93 6.46 10.76
|
536
|
+
107976 46.57 51.34 49.12 53.31 37.89
|
537
|
+
107986 4.06 5.92 6.19 4.97 5.57
|
538
|
+
107993 0 0 0 0 0.15
|
539
|
+
107995 33.87 20.9 23.45 14.24 21.59
|
540
|
+
107999 7.8 8.85 8.77 9.06 8.14
|
541
|
+
108000 5.91 3.34 2.02 0.74 5.1
|
542
|
+
108011 5.34 4.45 4.12 3.55 4.39
|
543
|
+
108012 28.23 24.82 26.23 20.51 18.81
|
544
|
+
108013 0 0 0 0 0
|
545
|
+
108014 100.69 81.92 101.93 109.9 83.6
|
546
|
+
108015 0 0 0.02 0 0.03
|
547
|
+
108017 0 0 0 0.19 0
|
548
|
+
108030 0 0 0 0 0
|
549
|
+
108037 62.38 45.36 51.55 39.14 42.91
|
550
|
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108043 0 0 0 0 0
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551
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108052 0.09 0 0 0 0.03
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552
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108058 30.93 28.6 29.46 31.01 22.82
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553
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554
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555
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556
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557
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558
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559
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560
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561
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562
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563
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108083 27.67 22.85 22.44 16.46 26.94
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564
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108086 12.1 12.47 9.79 8.95 12.62
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565
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108089 0.2 0.36 0.15 0.12 0.22
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566
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108096 0 0 0 0 0
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567
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108097 0.47 1.08 1.13 0.71 0.92
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568
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569
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108099 5.69 6.12 6.22 5.88 6.94
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570
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108100 27.78 34.44 24.54 24.3 25.53
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571
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572
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108105 0 0.07 0 0.03 0
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573
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574
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575
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576
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577
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578
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579
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580
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581
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108143 70.97 70.36 81.83 78.94 64.6
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108147 31.65 41.17 47.66 49.95 33.74
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583
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108148 35.68 43.12 38.89 29.38 38.74
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108150 35.76 47.52 28.13 26.09 34.58
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585
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586
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587
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588
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589
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595
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598
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599
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600
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601
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602
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605
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606
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607
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608
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108699 0 0 0 0 0
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609
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610
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611
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613
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614
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108755 0.35 0.55 0.87 0.94 0.27
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615
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108760 0 0 0 0 0
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616
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617
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618
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108802 0 0 0 0 0
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619
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108803 0 0 0 0 0
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620
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621
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622
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108816 0 0 0 0 0
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623
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624
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625
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108853 2.64 2.2 2.39 1.77 3.01
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626
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108888 13.21 15.06 15.83 13.55 14.82
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627
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108897 0 0 0 0 0
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628
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108899 0.42 0.2 0.2 0.05 0.23
|
629
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108900 2.24 1.15 2.3 1.89 2.87
|
630
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108902 17.68 18.81 20.65 19.62 16.98
|
631
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108903 36.48 33.22 35.95 32.23 32.08
|
632
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108907 33.38 16.32 18.88 7.19 17.86
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633
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108909 0 0 0 0 0
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634
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108911 83.28 86.48 90.65 72.35 89.45
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635
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108927 0.15 0.37 0.26 0.33 0
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636
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108943 1.68 1.65 2.2 1.52 1.69
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637
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108946 3.04 3.99 3.87 2.7 4.11
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638
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108954 0 0 0 0 0
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639
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108956 0 1.28 0.03 0 0
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640
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108958 4.08 4.21 3.81 3.73 4.26
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641
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642
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643
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108978 0 0 0 0 0
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644
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108989 21.25 20.98 14.87 6.23 23.71
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645
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108995 0.05 0.26 0.04 0.03 0.17
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646
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109006 14.9 19 12.73 22.82 8.05
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647
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109019 14.64 22.92 10.45 15.4 10.96
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648
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649
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109042 0 0.17 0.68 0.27 0.15
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650
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109050 0 0 0 0 0
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651
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109052 0.01 0 0 0 0.02
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652
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109054 30.75 27.42 33.94 26.51 22.29
|
653
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109065 5.07 5.06 5.84 4.8 4.54
|
654
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109075 14.27 17.01 20.39 23.81 14.36
|
655
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109077 14.63 12.49 14.28 13.75 11.4
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656
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109079 13.68 9.17 10.53 8.98 8.64
|
657
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109082 21.44 22.92 22.71 19.91 26.81
|
658
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109093 12.7 14.63 15.09 15.91 8.94
|
659
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109108 13.81 15.16 14.75 13.81 14.2
|
660
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109113 44.3 45.4 39.61 42.76 40.93
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661
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109115 10.51 11.12 10.13 10.6 7.15
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662
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109129 45.45 54.01 63.88 71.04 48.71
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663
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109135 1.39 1.2 1.11 0.56 1.04
|
664
|
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109136 2.45 1.7 2.38 2.37 1.5
|
665
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109145 10.03 15.23 18.6 13.47 13.66
|
666
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109151 1.83 3.04 2.1 1.35 2.83
|
667
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109154 68.81 51.31 54.81 46.78 63.99
|
668
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109161 9.57 8.98 10.41 9.95 9.29
|
669
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109168 4.02 5.88 6.33 5.66 6.23
|
670
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109205 0 0.03 0.06 0.02 0
|
671
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109212 40.18 15.85 27.67 13.74 26.02
|
672
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109218 0 0.04 0 0.08 0
|
673
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109225 55.15 211.98 253.8 323.83 202.69
|
674
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109229 16.8 13.53 13.36 16.24 11.71
|
675
|
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109232 3.81 4.38 12.41 6.59 5.27
|
676
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109241 0.99 1.38 1.05 0.76 1.6
|
677
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109242 2.15 1.36 1.31 0.85 1.81
|
678
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109245 0.32 3.09 2.94 5.45 0.84
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679
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109246 0.18 0.15 0.23 0.23 0.18
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680
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109254 0 0 0 0 0
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681
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109263 3.8 4.39 3.76 3.58 4.06
|
682
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109264 0 0 0 0 0
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683
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109270 0.14 0.08 0.4 0.19 1.18
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684
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109272 0 0 0 0 0
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685
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109275 8.01 7.57 8.86 8.26 8.18
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686
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109280 0 0 0 0 0
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687
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109284 50.62 38.97 46.35 55.66 45.34
|
688
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109294 0.01 0 0 0 0.04
|
689
|
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109305 29.26 30.79 36.24 32.96 26.84
|
690
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109314 0 0 0 0 0
|
691
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109323 0 0 0 0 0
|
692
|
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109331 19.9 15.43 14.47 10.46 15.69
|
693
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109332 0.14 0.6 0.08 0.05 0.08
|
694
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109333 7.43 9.9 7.27 5.57 9.41
|
695
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109342 0 0 0 0 0
|
696
|
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109346 2.95 2.9 2.81 2.83 2.22
|
697
|
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109349 0 0 0 0 0
|
698
|
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109359 29.54 31.62 31.02 29.62 27.25
|
699
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109552 56.27 41.91 45.76 49.02 31.26
|
700
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109575 0 0.14 0 0.15 0
|
701
|
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109593 0 0 0 0 0
|
702
|
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109594 1.44 0.09 0.29 0.46 0.1
|
703
|
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109624 0.24 0.36 0.06 0.13 0.21
|
704
|
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109637 0.92 0.08 0.03 0.08 0.61
|
705
|
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109648 1171.23 1825.82 771.99 1663.19 856.49
|
706
|
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109652 0.6 0.94 0.88 0.05 0.56
|
707
|
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109658 20.9 22.42 22.98 15.98 23.68
|
708
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109660 0 0.13 0.1 0 0
|
709
|
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109663 0 0 0 0.1 0
|
710
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109672 128.29 185.07 168.71 156.6 133.13
|
711
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109674 12.64 17 13.13 11.98 16.98
|
712
|
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109676 1.1 0.51 0.44 0.6 1
|
713
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109685 0.34 0 0.14 0.1 0.06
|
714
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109689 35.64 38.11 36.28 22.59 40.58
|
715
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109697 0 0 0 0 0
|
716
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109700 0.06 0.01 0 0.06 0.1
|
717
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109711 71.45 98.31 63.55 49.59 62.94
|
718
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109731 0 0.02 0 0.14 0.1
|
719
|
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109754 154.44 108.43 109.54 104.12 132.78
|
720
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109778 156.6 134.71 121.94 106.17 146.49
|
721
|
+
109785 3.95 4.23 3.88 3.88 3.56
|
722
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109791 0 0 0 0 0
|
723
|
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109801 18.98 13.96 10.43 19.13 11.66
|
724
|
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109815 72.84 58.7 70.03 86.45 55.04
|
725
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109820 0 0 0 0 0
|
726
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109821 0 0 0 0 0
|
727
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109857 6.31 9.64 9.24 11.2 8.88
|
728
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109880 1.6 2.81 1.96 2.32 2.29
|
729
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109889 0.22 0.12 0.07 0.04 0.01
|
730
|
+
109900 44.24 50.1 54.97 60.32 49.88
|
731
|
+
109901 1.67 2.1 3.48 2.82 2.09
|
732
|
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109904 0 0.02 0 0 0
|
733
|
+
109905 30.42 30.39 35.35 33.64 23.36
|
734
|
+
109910 36.41 31.67 30.54 22.39 32.42
|
735
|
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109929 4.39 4.38 3.58 3.95 2.97
|
736
|
+
109934 69.35 93.67 53 53.37 74.11
|
737
|
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109978 0 0 0.06 0 0
|
738
|
+
109979 0 0.13 0 0 0.08
|
739
|
+
110006 260.06 266.38 294.57 343.95 385.59
|
740
|
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110012 33.61 30.84 42.56 45.57 32.89
|
741
|
+
110033 32.09 17.51 22.16 10.29 22.17
|
742
|
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110052 61.38 23.02 22.97 14.71 38.04
|
743
|
+
110058 0 0 0 0 0
|
744
|
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110074 26.87 11.1 21.62 13.73 13.47
|
745
|
+
110075 0 0 0 0 0
|
746
|
+
110078 34.26 34.15 31.91 24.9 31.4
|
747
|
+
110082 0 0 0 0 0
|
748
|
+
110094 22.02 27.71 25.06 22.99 26.8
|
749
|
+
110095 10.67 11.88 21.6 13.56 20.4
|
750
|
+
110109 33.16 33.55 38.08 29.54 29.52
|
751
|
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110115 0 0 0 0 0
|
752
|
+
110119 7.09 10.3 11.22 10.77 8.65
|
753
|
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110135 0 0 0 0 0
|
754
|
+
110147 68.55 51.36 56.77 46.96 66.09
|
755
|
+
110157 24.05 32.18 29.85 28.75 28.5
|
756
|
+
110168 0 0.19 0.09 0.07 0.15
|
757
|
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110172 54.79 54.47 58.96 79.17 62.44
|
758
|
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110173 9.97 18.49 18.59 13.67 14.63
|
759
|
+
110187 0 0 0 0 0
|
760
|
+
110196 11.21 13.07 27.98 16.57 12.76
|
761
|
+
NA NA NA NA NA NA
|