bio-tabix 0.1.3 → 1.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/VERSION +1 -1
- data/bio-tabix.gemspec +2 -2
- data/ext/tabix/Rakefile +0 -1
- data/ext/tabix/mkrf_conf.rb +4 -4
- metadata +3 -3
data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.
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1
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+
1.0.0
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data/bio-tabix.gemspec
CHANGED
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@@ -5,11 +5,11 @@
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Gem::Specification.new do |s|
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s.name = "bio-tabix"
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-
s.version = "0.
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8
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+
s.version = "1.0.0"
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.authors = ["throwern"]
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-
s.date = "
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s.date = "2013-09-19"
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s.description = "Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/"
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s.email = "throwern@msu.edu"
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s.extensions = ["ext/tabix/mkrf_conf.rb"]
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data/ext/tabix/Rakefile
CHANGED
data/ext/tabix/mkrf_conf.rb
CHANGED
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@@ -10,7 +10,7 @@ version = File.open(File.join(path_external,"Version"),'r')
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Version = version.read
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version.close
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-
url = "
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+
url = "https://github.com/samtools/tabix/archive/master.zip"
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TabixFile = "tabix-trunk.tar"
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File.open(File.join(path,"Rakefile"),"w") do |rakefile|
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@@ -33,7 +33,7 @@ end
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task :compile do
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sh "tar xvf #{TabixFile}"
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-
cd("tabix") do
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+
cd("tabix-master") do
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#sh "patch < ../Makefile-bioruby.patch"
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sh "make"
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cp("libtabix.a","#{path_external}")
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@@ -59,11 +59,11 @@ task :clean do
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# end
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# rm("#{TabixFile}")
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# rm_rf("tabix-#{Version}")
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-
cd("tabix") do
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cd("tabix-master") do
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sh "make clean"
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end
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rm("#{TabixFile}")
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-
rm_rf("tabix")
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rm_rf("tabix-master")
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end
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task :default => [:download, :compile, :clean]
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
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--- !ruby/object:Gem::Specification
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name: bio-tabix
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version: !ruby/object:Gem::Version
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version: 0.
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version: 1.0.0
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prerelease:
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platform: ruby
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authors:
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date:
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date: 2013-09-19 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: ffi
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@@ -148,7 +148,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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version: '0'
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segments:
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- 0
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-
hash:
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hash: 4567942817171288453
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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