bio-tabix 0.1.3 → 1.0.0

data/VERSION

@@ -1 +1 @@
-0.1.3
+1.0.0

data/bio-tabix.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "bio-tabix"
-  s.version = "0.1.3"
+  s.version = "1.0.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["throwern"]
-  s.date = "2012-05-07"
+  s.date = "2013-09-19"
   s.description = "Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/"
   s.email = "throwern@msu.edu"
   s.extensions = ["ext/tabix/mkrf_conf.rb"]

data/ext/tabix/Rakefile

@@ -1,2 +1 @@
 placeholder
-  

data/ext/tabix/mkrf_conf.rb

@@ -10,7 +10,7 @@ version = File.open(File.join(path_external,"Version"),'r')
 Version = version.read
 version.close
 
-url = "http://samtools.svn.sourceforge.net/viewvc/samtools/trunk/tabix/?view=tar"
+url = "https://github.com/samtools/tabix/archive/master.zip"
 TabixFile = "tabix-trunk.tar"
 
 File.open(File.join(path,"Rakefile"),"w") do |rakefile|
@@ -33,7 +33,7 @@ end
     
 task :compile do
   sh "tar xvf #{TabixFile}"
-  cd("tabix") do
+  cd("tabix-master") do
     #sh "patch < ../Makefile-bioruby.patch"
     sh "make"
     cp("libtabix.a","#{path_external}")
@@ -59,11 +59,11 @@ task :clean do
   # end
   # rm("#{TabixFile}")
   # rm_rf("tabix-#{Version}")
-  cd("tabix") do
+  cd("tabix-master") do
     sh "make clean"
   end
   rm("#{TabixFile}")
-  rm_rf("tabix")
+  rm_rf("tabix-master")
 end
 
 task :default => [:download, :compile, :clean]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-tabix
 version: !ruby/object:Gem::Version
-  version: 0.1.3
+  version: 1.0.0
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-05-07 00:00:00.000000000 Z
+date: 2013-09-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: ffi
@@ -148,7 +148,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -998001347313300053
+      hash: 4567942817171288453
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: