bio-samtools 0.3.0 → 0.3.1

data/VERSION

@@ -1 +1 @@
-0.3.0
+0.3.1

data/bio-samtools.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{bio-samtools}
-  s.version = "0.3.0"
+  s.version = "0.3.1"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = [%q{Ricardo Ramirez-Gonzalez}, %q{Dan MacLean}, %q{Raoul J.P. Bonnal}]
-  s.date = %q{2011-10-26}
+  s.date = %q{2011-10-27}
   s.description = %q{Binder of samtools for ruby, on the top of FFI. 
 
   This project was born from the need to add support of BAM files to 

data/lib/bio/db/sam/sam.rb

@@ -78,6 +78,7 @@ module Bio
         attach_function :samwrite, [ :pointer, :pointer ], :int
         attach_function :sampileup, [ :pointer, :int, :bam_pileup_f, :pointer ], :int
         attach_function :samfaipath, [ :string ], :string
+        attach_function :bam_mpileup, [ :int, :pointer ], :int
       end
     end
   end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-samtools
 version: !ruby/object:Gem::Version
-  version: 0.3.0
+  version: 0.3.1
   prerelease: 
 platform: ruby
 authors:
@@ -11,11 +11,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2011-10-26 00:00:00.000000000Z
+date: 2011-10-27 00:00:00.000000000Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2170620360 !ruby/object:Gem::Requirement
+  requirement: &2169462860 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *2170620360
+  version_requirements: *2169462860
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2170612920 !ruby/object:Gem::Requirement
+  requirement: &2169461340 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
         version: 1.4.2
   type: :runtime
   prerelease: false
-  version_requirements: *2170612920
+  version_requirements: *2169461340
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &2170610380 !ruby/object:Gem::Requirement
+  requirement: &2169458620 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2170610380
+  version_requirements: *2169458620
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &2170607620 !ruby/object:Gem::Requirement
+  requirement: &2169456540 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -56,10 +56,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *2170607620
+  version_requirements: *2169456540
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &2170606580 !ruby/object:Gem::Requirement
+  requirement: &2169454480 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -67,10 +67,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2170606580
+  version_requirements: *2169454480
 - !ruby/object:Gem::Dependency
   name: rcov
-  requirement: &2170597180 !ruby/object:Gem::Requirement
+  requirement: &2169453180 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2170597180
+  version_requirements: *2169453180
 - !ruby/object:Gem::Dependency
   name: bio
-  requirement: &2170593180 !ruby/object:Gem::Requirement
+  requirement: &2169451320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
         version: 1.4.2
   type: :development
   prerelease: false
-  version_requirements: *2170593180
+  version_requirements: *2169451320
 - !ruby/object:Gem::Dependency
   name: ffi
-  requirement: &2170591660 !ruby/object:Gem::Requirement
+  requirement: &2169447120 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -100,7 +100,7 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *2170591660
+  version_requirements: *2169447120
 description: ! "Binder of samtools for ruby, on the top of FFI. \n\n  This project
   was born from the need to add support of BAM files to \n  the gee_fu genome browser
   (http://github.com/danmaclean/gee_fu)."
@@ -237,7 +237,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: 1941204301952225721
+      hash: -3326585484229877040
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: