bio-samtools 0.3.0 → 0.3.1

Sign up to get free protection for your applications and to get access to all the features.
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.3.0
1
+ 0.3.1
@@ -5,11 +5,11 @@
5
5
 
6
6
  Gem::Specification.new do |s|
7
7
  s.name = %q{bio-samtools}
8
- s.version = "0.3.0"
8
+ s.version = "0.3.1"
9
9
 
10
10
  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
11
11
  s.authors = [%q{Ricardo Ramirez-Gonzalez}, %q{Dan MacLean}, %q{Raoul J.P. Bonnal}]
12
- s.date = %q{2011-10-26}
12
+ s.date = %q{2011-10-27}
13
13
  s.description = %q{Binder of samtools for ruby, on the top of FFI.
14
14
 
15
15
  This project was born from the need to add support of BAM files to
@@ -78,6 +78,7 @@ module Bio
78
78
  attach_function :samwrite, [ :pointer, :pointer ], :int
79
79
  attach_function :sampileup, [ :pointer, :int, :bam_pileup_f, :pointer ], :int
80
80
  attach_function :samfaipath, [ :string ], :string
81
+ attach_function :bam_mpileup, [ :int, :pointer ], :int
81
82
  end
82
83
  end
83
84
  end
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bio-samtools
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.3.0
4
+ version: 0.3.1
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -11,11 +11,11 @@ authors:
11
11
  autorequire:
12
12
  bindir: bin
13
13
  cert_chain: []
14
- date: 2011-10-26 00:00:00.000000000Z
14
+ date: 2011-10-27 00:00:00.000000000Z
15
15
  dependencies:
16
16
  - !ruby/object:Gem::Dependency
17
17
  name: ffi
18
- requirement: &2170620360 !ruby/object:Gem::Requirement
18
+ requirement: &2169462860 !ruby/object:Gem::Requirement
19
19
  none: false
20
20
  requirements:
21
21
  - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
23
23
  version: '0'
24
24
  type: :runtime
25
25
  prerelease: false
26
- version_requirements: *2170620360
26
+ version_requirements: *2169462860
27
27
  - !ruby/object:Gem::Dependency
28
28
  name: bio
29
- requirement: &2170612920 !ruby/object:Gem::Requirement
29
+ requirement: &2169461340 !ruby/object:Gem::Requirement
30
30
  none: false
31
31
  requirements:
32
32
  - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
34
34
  version: 1.4.2
35
35
  type: :runtime
36
36
  prerelease: false
37
- version_requirements: *2170612920
37
+ version_requirements: *2169461340
38
38
  - !ruby/object:Gem::Dependency
39
39
  name: shoulda
40
- requirement: &2170610380 !ruby/object:Gem::Requirement
40
+ requirement: &2169458620 !ruby/object:Gem::Requirement
41
41
  none: false
42
42
  requirements:
43
43
  - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
45
45
  version: '0'
46
46
  type: :development
47
47
  prerelease: false
48
- version_requirements: *2170610380
48
+ version_requirements: *2169458620
49
49
  - !ruby/object:Gem::Dependency
50
50
  name: bundler
51
- requirement: &2170607620 !ruby/object:Gem::Requirement
51
+ requirement: &2169456540 !ruby/object:Gem::Requirement
52
52
  none: false
53
53
  requirements:
54
54
  - - ~>
@@ -56,10 +56,10 @@ dependencies:
56
56
  version: 1.0.0
57
57
  type: :development
58
58
  prerelease: false
59
- version_requirements: *2170607620
59
+ version_requirements: *2169456540
60
60
  - !ruby/object:Gem::Dependency
61
61
  name: jeweler
62
- requirement: &2170606580 !ruby/object:Gem::Requirement
62
+ requirement: &2169454480 !ruby/object:Gem::Requirement
63
63
  none: false
64
64
  requirements:
65
65
  - - ! '>='
@@ -67,10 +67,10 @@ dependencies:
67
67
  version: '0'
68
68
  type: :development
69
69
  prerelease: false
70
- version_requirements: *2170606580
70
+ version_requirements: *2169454480
71
71
  - !ruby/object:Gem::Dependency
72
72
  name: rcov
73
- requirement: &2170597180 !ruby/object:Gem::Requirement
73
+ requirement: &2169453180 !ruby/object:Gem::Requirement
74
74
  none: false
75
75
  requirements:
76
76
  - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
78
78
  version: '0'
79
79
  type: :development
80
80
  prerelease: false
81
- version_requirements: *2170597180
81
+ version_requirements: *2169453180
82
82
  - !ruby/object:Gem::Dependency
83
83
  name: bio
84
- requirement: &2170593180 !ruby/object:Gem::Requirement
84
+ requirement: &2169451320 !ruby/object:Gem::Requirement
85
85
  none: false
86
86
  requirements:
87
87
  - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
89
89
  version: 1.4.2
90
90
  type: :development
91
91
  prerelease: false
92
- version_requirements: *2170593180
92
+ version_requirements: *2169451320
93
93
  - !ruby/object:Gem::Dependency
94
94
  name: ffi
95
- requirement: &2170591660 !ruby/object:Gem::Requirement
95
+ requirement: &2169447120 !ruby/object:Gem::Requirement
96
96
  none: false
97
97
  requirements:
98
98
  - - ! '>='
@@ -100,7 +100,7 @@ dependencies:
100
100
  version: '0'
101
101
  type: :development
102
102
  prerelease: false
103
- version_requirements: *2170591660
103
+ version_requirements: *2169447120
104
104
  description: ! "Binder of samtools for ruby, on the top of FFI. \n\n This project
105
105
  was born from the need to add support of BAM files to \n the gee_fu genome browser
106
106
  (http://github.com/danmaclean/gee_fu)."
@@ -237,7 +237,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
237
237
  version: '0'
238
238
  segments:
239
239
  - 0
240
- hash: 1941204301952225721
240
+ hash: -3326585484229877040
241
241
  required_rubygems_version: !ruby/object:Gem::Requirement
242
242
  none: false
243
243
  requirements: