bio-samtools 0.2.3 → 0.2.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/VERSION +1 -1
- data/bio-samtools.gemspec +1 -1
- data/ext/mkrf_conf.rb +3 -1
- metadata +2 -2
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.2.
|
|
1
|
+
0.2.4
|
data/bio-samtools.gemspec
CHANGED
|
@@ -5,7 +5,7 @@
|
|
|
5
5
|
|
|
6
6
|
Gem::Specification.new do |s|
|
|
7
7
|
s.name = %q{bio-samtools}
|
|
8
|
-
s.version = "0.2.
|
|
8
|
+
s.version = "0.2.4"
|
|
9
9
|
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
11
11
|
s.authors = ["Ricardo Ramirez-Gonzalez", "Dan MacLean", "Raoul J.P. Bonnal"]
|
data/ext/mkrf_conf.rb
CHANGED
|
@@ -36,14 +36,16 @@ end
|
|
|
36
36
|
task :compile do
|
|
37
37
|
sh "tar xvfj #{SamToolsFile}"
|
|
38
38
|
cd("samtools-#{Version}") do
|
|
39
|
-
|
|
39
|
+
|
|
40
40
|
case Config::CONFIG['host_os']
|
|
41
41
|
when /linux/
|
|
42
42
|
sh "CFLAGS='-g -Wall -O2 -fPIC' make -e"
|
|
43
|
+
cp("libbam.a","#{path_external}")
|
|
43
44
|
sh "CFLAGS='-g -Wall -O2 -fPIC' make -e libbam.so.1-local"
|
|
44
45
|
cp("libbam.so.1","#{path_external}")
|
|
45
46
|
when /darwin/
|
|
46
47
|
sh "make"
|
|
48
|
+
cp("libbam.a","#{path_external}")
|
|
47
49
|
sh "make libbam.1.dylib-local"
|
|
48
50
|
cp("libbam.1.dylib","#{path_external}")
|
|
49
51
|
when /mswin|mingw/ then raise NotImplementedError, "BWA library is not available for Windows platform"
|
metadata
CHANGED
|
@@ -2,7 +2,7 @@
|
|
|
2
2
|
name: bio-samtools
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
4
|
prerelease:
|
|
5
|
-
version: 0.2.
|
|
5
|
+
version: 0.2.4
|
|
6
6
|
platform: ruby
|
|
7
7
|
authors:
|
|
8
8
|
- Ricardo Ramirez-Gonzalez
|
|
@@ -175,7 +175,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
|
175
175
|
requirements:
|
|
176
176
|
- - ">="
|
|
177
177
|
- !ruby/object:Gem::Version
|
|
178
|
-
hash:
|
|
178
|
+
hash: 4574073522320784931
|
|
179
179
|
segments:
|
|
180
180
|
- 0
|
|
181
181
|
version: "0"
|