bio-samtools 0.2.3 → 0.2.4
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- data/VERSION +1 -1
- data/bio-samtools.gemspec +1 -1
- data/ext/mkrf_conf.rb +3 -1
- metadata +2 -2
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.2.
|
1
|
+
0.2.4
|
data/bio-samtools.gemspec
CHANGED
@@ -5,7 +5,7 @@
|
|
5
5
|
|
6
6
|
Gem::Specification.new do |s|
|
7
7
|
s.name = %q{bio-samtools}
|
8
|
-
s.version = "0.2.
|
8
|
+
s.version = "0.2.4"
|
9
9
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
|
s.authors = ["Ricardo Ramirez-Gonzalez", "Dan MacLean", "Raoul J.P. Bonnal"]
|
data/ext/mkrf_conf.rb
CHANGED
@@ -36,14 +36,16 @@ end
|
|
36
36
|
task :compile do
|
37
37
|
sh "tar xvfj #{SamToolsFile}"
|
38
38
|
cd("samtools-#{Version}") do
|
39
|
-
|
39
|
+
|
40
40
|
case Config::CONFIG['host_os']
|
41
41
|
when /linux/
|
42
42
|
sh "CFLAGS='-g -Wall -O2 -fPIC' make -e"
|
43
|
+
cp("libbam.a","#{path_external}")
|
43
44
|
sh "CFLAGS='-g -Wall -O2 -fPIC' make -e libbam.so.1-local"
|
44
45
|
cp("libbam.so.1","#{path_external}")
|
45
46
|
when /darwin/
|
46
47
|
sh "make"
|
48
|
+
cp("libbam.a","#{path_external}")
|
47
49
|
sh "make libbam.1.dylib-local"
|
48
50
|
cp("libbam.1.dylib","#{path_external}")
|
49
51
|
when /mswin|mingw/ then raise NotImplementedError, "BWA library is not available for Windows platform"
|
metadata
CHANGED
@@ -2,7 +2,7 @@
|
|
2
2
|
name: bio-samtools
|
3
3
|
version: !ruby/object:Gem::Version
|
4
4
|
prerelease:
|
5
|
-
version: 0.2.
|
5
|
+
version: 0.2.4
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
8
8
|
- Ricardo Ramirez-Gonzalez
|
@@ -175,7 +175,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
175
175
|
requirements:
|
176
176
|
- - ">="
|
177
177
|
- !ruby/object:Gem::Version
|
178
|
-
hash:
|
178
|
+
hash: 4574073522320784931
|
179
179
|
segments:
|
180
180
|
- 0
|
181
181
|
version: "0"
|