bio-samtools 0.4.0 → 0.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. data/VERSION +1 -1
  2. data/bio-samtools.gemspec +1 -3
  3. metadata +20 -22
  4. data/lib/bio/db/sam/external/libbam.1.dylib +0 -0
  5. data/lib/bio/db/sam/external/libbam.a +0 -0
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.4.0
1
+ 0.4.1
data/bio-samtools.gemspec CHANGED
@@ -5,7 +5,7 @@
5
5
 
6
6
  Gem::Specification.new do |s|
7
7
  s.name = %q{bio-samtools}
8
- s.version = "0.4.0"
8
+ s.version = "0.4.1"
9
9
 
10
10
  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
11
11
  s.authors = [%q{Ricardo Ramirez-Gonzalez}, %q{Dan MacLean}, %q{Raoul J.P. Bonnal}]
@@ -102,8 +102,6 @@ Gem::Specification.new do |s|
102
102
  "lib/bio/db/sam/bam.rb",
103
103
  "lib/bio/db/sam/external/COPYING",
104
104
  "lib/bio/db/sam/external/VERSION",
105
- "lib/bio/db/sam/external/libbam.1.dylib",
106
- "lib/bio/db/sam/external/libbam.a",
107
105
  "lib/bio/db/sam/faidx.rb",
108
106
  "lib/bio/db/sam/library.rb",
109
107
  "lib/bio/db/sam/pileup.rb",
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: bio-samtools
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.4.0
4
+ version: 0.4.1
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -15,7 +15,7 @@ date: 2011-11-09 00:00:00.000000000Z
15
15
  dependencies:
16
16
  - !ruby/object:Gem::Dependency
17
17
  name: ffi
18
- requirement: &2151840320 !ruby/object:Gem::Requirement
18
+ requirement: &2151877660 !ruby/object:Gem::Requirement
19
19
  none: false
20
20
  requirements:
21
21
  - - ! '>='
@@ -23,10 +23,10 @@ dependencies:
23
23
  version: '0'
24
24
  type: :runtime
25
25
  prerelease: false
26
- version_requirements: *2151840320
26
+ version_requirements: *2151877660
27
27
  - !ruby/object:Gem::Dependency
28
28
  name: bio
29
- requirement: &2151830060 !ruby/object:Gem::Requirement
29
+ requirement: &2151875400 !ruby/object:Gem::Requirement
30
30
  none: false
31
31
  requirements:
32
32
  - - ! '>='
@@ -34,10 +34,10 @@ dependencies:
34
34
  version: 1.4.2
35
35
  type: :runtime
36
36
  prerelease: false
37
- version_requirements: *2151830060
37
+ version_requirements: *2151875400
38
38
  - !ruby/object:Gem::Dependency
39
39
  name: shoulda
40
- requirement: &2151828360 !ruby/object:Gem::Requirement
40
+ requirement: &2151871380 !ruby/object:Gem::Requirement
41
41
  none: false
42
42
  requirements:
43
43
  - - ! '>='
@@ -45,10 +45,10 @@ dependencies:
45
45
  version: '0'
46
46
  type: :development
47
47
  prerelease: false
48
- version_requirements: *2151828360
48
+ version_requirements: *2151871380
49
49
  - !ruby/object:Gem::Dependency
50
50
  name: bundler
51
- requirement: &2151826260 !ruby/object:Gem::Requirement
51
+ requirement: &2151863520 !ruby/object:Gem::Requirement
52
52
  none: false
53
53
  requirements:
54
54
  - - ~>
@@ -56,10 +56,10 @@ dependencies:
56
56
  version: 1.0.0
57
57
  type: :development
58
58
  prerelease: false
59
- version_requirements: *2151826260
59
+ version_requirements: *2151863520
60
60
  - !ruby/object:Gem::Dependency
61
61
  name: jeweler
62
- requirement: &2151823300 !ruby/object:Gem::Requirement
62
+ requirement: &2151851920 !ruby/object:Gem::Requirement
63
63
  none: false
64
64
  requirements:
65
65
  - - ! '>='
@@ -67,10 +67,10 @@ dependencies:
67
67
  version: '0'
68
68
  type: :development
69
69
  prerelease: false
70
- version_requirements: *2151823300
70
+ version_requirements: *2151851920
71
71
  - !ruby/object:Gem::Dependency
72
72
  name: rcov
73
- requirement: &2151821740 !ruby/object:Gem::Requirement
73
+ requirement: &2151845300 !ruby/object:Gem::Requirement
74
74
  none: false
75
75
  requirements:
76
76
  - - ! '>='
@@ -78,10 +78,10 @@ dependencies:
78
78
  version: '0'
79
79
  type: :development
80
80
  prerelease: false
81
- version_requirements: *2151821740
81
+ version_requirements: *2151845300
82
82
  - !ruby/object:Gem::Dependency
83
83
  name: bio
84
- requirement: &2151820520 !ruby/object:Gem::Requirement
84
+ requirement: &2151840740 !ruby/object:Gem::Requirement
85
85
  none: false
86
86
  requirements:
87
87
  - - ! '>='
@@ -89,10 +89,10 @@ dependencies:
89
89
  version: 1.4.2
90
90
  type: :development
91
91
  prerelease: false
92
- version_requirements: *2151820520
92
+ version_requirements: *2151840740
93
93
  - !ruby/object:Gem::Dependency
94
94
  name: ffi
95
- requirement: &2151819540 !ruby/object:Gem::Requirement
95
+ requirement: &2151830540 !ruby/object:Gem::Requirement
96
96
  none: false
97
97
  requirements:
98
98
  - - ! '>='
@@ -100,10 +100,10 @@ dependencies:
100
100
  version: '0'
101
101
  type: :development
102
102
  prerelease: false
103
- version_requirements: *2151819540
103
+ version_requirements: *2151830540
104
104
  - !ruby/object:Gem::Dependency
105
105
  name: rdoc
106
- requirement: &2151818000 !ruby/object:Gem::Requirement
106
+ requirement: &2151828720 !ruby/object:Gem::Requirement
107
107
  none: false
108
108
  requirements:
109
109
  - - ! '>='
@@ -111,7 +111,7 @@ dependencies:
111
111
  version: '0'
112
112
  type: :development
113
113
  prerelease: false
114
- version_requirements: *2151818000
114
+ version_requirements: *2151828720
115
115
  description: ! "Binder of samtools for ruby, on the top of FFI. \n\n This project
116
116
  was born from the need to add support of BAM files to \n the gee_fu genome browser
117
117
  (http://github.com/danmaclean/gee_fu)."
@@ -204,8 +204,6 @@ files:
204
204
  - lib/bio/db/sam/bam.rb
205
205
  - lib/bio/db/sam/external/COPYING
206
206
  - lib/bio/db/sam/external/VERSION
207
- - lib/bio/db/sam/external/libbam.1.dylib
208
- - lib/bio/db/sam/external/libbam.a
209
207
  - lib/bio/db/sam/faidx.rb
210
208
  - lib/bio/db/sam/library.rb
211
209
  - lib/bio/db/sam/pileup.rb
@@ -255,7 +253,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
255
253
  version: '0'
256
254
  segments:
257
255
  - 0
258
- hash: -1183520990124056077
256
+ hash: -1752695698829417260
259
257
  required_rubygems_version: !ruby/object:Gem::Requirement
260
258
  none: false
261
259
  requirements:
data/lib/bio/db/sam/external/libbam.1.dylib DELETED
Binary file
data/lib/bio/db/sam/external/libbam.a DELETED
Binary file