bio-samtools-server 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/.document +5 -0
- data/.travis.yml +13 -0
- data/Gemfile +16 -0
- data/LICENSE.txt +20 -0
- data/README.md +47 -0
- data/README.rdoc +48 -0
- data/Rakefile +55 -0
- data/VERSION +1 -0
- data/bin/bam-server.rb +28 -0
- data/lib/bio-samtools-server.rb +12 -0
- data/lib/bio-samtools-server/samtools-server.rb +46 -0
- data/test/helper.rb +34 -0
- data/test/test_bio-samtools-server.rb +7 -0
- metadata +172 -0
checksums.yaml
ADDED
@@ -0,0 +1,7 @@
|
|
1
|
+
---
|
2
|
+
SHA1:
|
3
|
+
metadata.gz: e23edcddef2395d0d46cb0d405c9931280af98ee
|
4
|
+
data.tar.gz: e2887c08e5853df572e72f32008c4e3266a46849
|
5
|
+
SHA512:
|
6
|
+
metadata.gz: 590478424e3e6613786cfd4c3b114bc3b904bfd90440c6783e4f9d36c9c8595d6c30432986591d853639ec3ef24d9b1c1702036ac815e232438191afcea44519
|
7
|
+
data.tar.gz: 4cc09d1c5ca6c921730b0e8626cc7ade786afb1705f84a10f1e05bb5b12aa160ea2f03fbd2438e658c1cbca3464a06c45e97f3a0a92e86f5d74a92065225aa4d
|
data/.document
ADDED
data/.travis.yml
ADDED
@@ -0,0 +1,13 @@
|
|
1
|
+
language: ruby
|
2
|
+
rvm:
|
3
|
+
- 1.9.2
|
4
|
+
- 1.9.3
|
5
|
+
- jruby-19mode # JRuby in 1.9 mode
|
6
|
+
|
7
|
+
# - rbx-19mode
|
8
|
+
# - 1.8.7
|
9
|
+
# - jruby-18mode # JRuby in 1.8 mode
|
10
|
+
# - rbx-18mode
|
11
|
+
|
12
|
+
# uncomment this line if your project needs to run something other than `rake`:
|
13
|
+
# script: bundle exec rspec spec
|
data/Gemfile
ADDED
@@ -0,0 +1,16 @@
|
|
1
|
+
source "http://rubygems.org"
|
2
|
+
# Add dependencies required to use your gem here.
|
3
|
+
# Example:
|
4
|
+
# gem "activesupport", ">= 2.3.5"
|
5
|
+
gem "bio-samtools", ">=2.0.3"
|
6
|
+
gem "sinatra", ">=1.4.5"
|
7
|
+
# Add dependencies to develop your gem here.
|
8
|
+
# Include everything needed to run rake, tests, features, etc.
|
9
|
+
group :development do
|
10
|
+
gem "shoulda", ">= 0"
|
11
|
+
gem "rdoc", "~> 3.12"
|
12
|
+
gem "simplecov", ">= 0"
|
13
|
+
gem "jeweler", "~> 2", :git => "https://github.com/technicalpickles/jeweler.git"
|
14
|
+
gem "bundler", ">= 1.0.21"
|
15
|
+
gem "bio", ">= 1.4.2"
|
16
|
+
end
|
data/LICENSE.txt
ADDED
@@ -0,0 +1,20 @@
|
|
1
|
+
Copyright (c) 2014 homonecloco
|
2
|
+
|
3
|
+
Permission is hereby granted, free of charge, to any person obtaining
|
4
|
+
a copy of this software and associated documentation files (the
|
5
|
+
"Software"), to deal in the Software without restriction, including
|
6
|
+
without limitation the rights to use, copy, modify, merge, publish,
|
7
|
+
distribute, sublicense, and/or sell copies of the Software, and to
|
8
|
+
permit persons to whom the Software is furnished to do so, subject to
|
9
|
+
the following conditions:
|
10
|
+
|
11
|
+
The above copyright notice and this permission notice shall be
|
12
|
+
included in all copies or substantial portions of the Software.
|
13
|
+
|
14
|
+
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
|
15
|
+
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
|
16
|
+
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
|
17
|
+
NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
|
18
|
+
LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
|
19
|
+
OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
|
20
|
+
WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
data/README.md
ADDED
@@ -0,0 +1,47 @@
|
|
1
|
+
# bio-samtools-server
|
2
|
+
|
3
|
+
[](http://travis-ci.org/homonecloco/bioruby-samtools-server)
|
4
|
+
|
5
|
+
Full description goes here
|
6
|
+
|
7
|
+
Note: this software is under active development!
|
8
|
+
|
9
|
+
## Installation
|
10
|
+
|
11
|
+
```sh
|
12
|
+
gem install bio-samtools-server
|
13
|
+
```
|
14
|
+
|
15
|
+
## Usage
|
16
|
+
|
17
|
+
```ruby
|
18
|
+
require 'bio-samtools-server'
|
19
|
+
```
|
20
|
+
|
21
|
+
The API doc is online. For more code examples see the test files in
|
22
|
+
the source tree.
|
23
|
+
|
24
|
+
## Project home page
|
25
|
+
|
26
|
+
Information on the source tree, documentation, examples, issues and
|
27
|
+
how to contribute, see
|
28
|
+
|
29
|
+
http://github.com/homonecloco/bioruby-samtools-server
|
30
|
+
|
31
|
+
The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.
|
32
|
+
|
33
|
+
## Cite
|
34
|
+
|
35
|
+
If you use this software, please cite one of
|
36
|
+
|
37
|
+
* [BioRuby: bioinformatics software for the Ruby programming language](http://dx.doi.org/10.1093/bioinformatics/btq475)
|
38
|
+
* [Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics](http://dx.doi.org/10.1093/bioinformatics/bts080)
|
39
|
+
|
40
|
+
## Biogems.info
|
41
|
+
|
42
|
+
This Biogem is published at (http://biogems.info/index.html#bio-samtools-server)
|
43
|
+
|
44
|
+
## Copyright
|
45
|
+
|
46
|
+
Copyright (c) 2014 homonecloco. See LICENSE.txt for further details.
|
47
|
+
|
data/README.rdoc
ADDED
@@ -0,0 +1,48 @@
|
|
1
|
+
= bio-samtools-server
|
2
|
+
|
3
|
+
{<img
|
4
|
+
src="https://secure.travis-ci.org/homonecloco/bioruby-samtools-server.png"
|
5
|
+
/>}[http://travis-ci.org/#!/homonecloco/bioruby-samtools-server]
|
6
|
+
|
7
|
+
Full description goes here
|
8
|
+
|
9
|
+
Note: this software is under active development!
|
10
|
+
|
11
|
+
== Installation
|
12
|
+
|
13
|
+
gem install bio-samtools-server
|
14
|
+
|
15
|
+
== Usage
|
16
|
+
|
17
|
+
== Developers
|
18
|
+
|
19
|
+
To use the library
|
20
|
+
|
21
|
+
require 'bio-samtools-server'
|
22
|
+
|
23
|
+
The API doc is online. For more code examples see also the test files in
|
24
|
+
the source tree.
|
25
|
+
|
26
|
+
== Project home page
|
27
|
+
|
28
|
+
Information on the source tree, documentation, issues and how to contribute, see
|
29
|
+
|
30
|
+
http://github.com/homonecloco/bioruby-samtools-server
|
31
|
+
|
32
|
+
The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby.
|
33
|
+
|
34
|
+
== Cite
|
35
|
+
|
36
|
+
If you use this software, please cite one of
|
37
|
+
|
38
|
+
* [BioRuby: bioinformatics software for the Ruby programming language](http://dx.doi.org/10.1093/bioinformatics/btq475)
|
39
|
+
* [Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics](http://dx.doi.org/10.1093/bioinformatics/bts080)
|
40
|
+
|
41
|
+
== Biogems.info
|
42
|
+
|
43
|
+
This Biogem is published at http://biogems.info/index.html#bio-samtools-server
|
44
|
+
|
45
|
+
== Copyright
|
46
|
+
|
47
|
+
Copyright (c) 2014 homonecloco. See LICENSE.txt for further details.
|
48
|
+
|
data/Rakefile
ADDED
@@ -0,0 +1,55 @@
|
|
1
|
+
# encoding: utf-8
|
2
|
+
|
3
|
+
require 'rubygems'
|
4
|
+
require 'bundler'
|
5
|
+
|
6
|
+
version = File.exist?('VERSION') ? File.read('VERSION') : ""
|
7
|
+
|
8
|
+
begin
|
9
|
+
Bundler.setup(:default, :development)
|
10
|
+
rescue Bundler::BundlerError => e
|
11
|
+
$stderr.puts e.message
|
12
|
+
$stderr.puts "Run `bundle install` to install missing gems"
|
13
|
+
exit e.status_code
|
14
|
+
end
|
15
|
+
require 'rake'
|
16
|
+
|
17
|
+
require 'jeweler'
|
18
|
+
Jeweler::Tasks.new do |gem|
|
19
|
+
# gem is a Gem::Specification... see http://guides.rubygems.org/specification-reference/ for more options
|
20
|
+
gem.name = "bio-samtools-server"
|
21
|
+
gem.homepage = "http://github.com/homonecloco/bioruby-samtools-server"
|
22
|
+
gem.license = "MIT"
|
23
|
+
gem.summary = %Q{Web server for bio-samtools}
|
24
|
+
gem.description = %Q{A minimal web service on the top of sinatra to query bam files}
|
25
|
+
gem.email = "ricardo.ramirez-gonzalez@tgac.ac.uk"
|
26
|
+
gem.authors = ["homonecloco"]
|
27
|
+
gem.version = version
|
28
|
+
# dependencies defined in Gemfile
|
29
|
+
end
|
30
|
+
Jeweler::RubygemsDotOrgTasks.new
|
31
|
+
|
32
|
+
require 'rake/testtask'
|
33
|
+
Rake::TestTask.new(:test) do |test|
|
34
|
+
test.libs << 'lib' << 'test'
|
35
|
+
test.pattern = 'test/**/test_*.rb'
|
36
|
+
test.verbose = true
|
37
|
+
end
|
38
|
+
|
39
|
+
desc "Code coverage detail"
|
40
|
+
task :simplecov do
|
41
|
+
ENV['COVERAGE'] = "true"
|
42
|
+
Rake::Task['test'].execute
|
43
|
+
end
|
44
|
+
|
45
|
+
task :default => :test
|
46
|
+
|
47
|
+
require 'rdoc/task'
|
48
|
+
Rake::RDocTask.new do |rdoc|
|
49
|
+
version = File.exist?('VERSION') ? File.read('VERSION') : ""
|
50
|
+
|
51
|
+
rdoc.rdoc_dir = 'rdoc'
|
52
|
+
rdoc.title = "bio-samtools-server #{version}"
|
53
|
+
rdoc.rdoc_files.include('README*')
|
54
|
+
rdoc.rdoc_files.include('lib/**/*.rb')
|
55
|
+
end
|
data/VERSION
ADDED
@@ -0,0 +1 @@
|
|
1
|
+
0.1.1
|
data/bin/bam-server.rb
ADDED
@@ -0,0 +1,28 @@
|
|
1
|
+
require 'optparse'
|
2
|
+
#require 'sinatra/base'
|
3
|
+
|
4
|
+
$: << File.expand_path(File.dirname(__FILE__) + '/../lib')
|
5
|
+
$: << File.expand_path('.')
|
6
|
+
path=File.expand_path(File.dirname(__FILE__) + '/../lib/bio-samtools-server.rb')
|
7
|
+
$stderr.puts "Loading: #{path}"
|
8
|
+
require path
|
9
|
+
|
10
|
+
|
11
|
+
options = {}
|
12
|
+
|
13
|
+
|
14
|
+
OptionParser.new do |opts|
|
15
|
+
opts.banner = "Usage: bam-server.rb [options]"
|
16
|
+
|
17
|
+
opts.on("-r", "--reference FOLDER", "Folder with fasta files with the reference sequences. Make sure to run faidx before running bfr in parallel") do |o|
|
18
|
+
options[:reference] = o
|
19
|
+
end
|
20
|
+
|
21
|
+
opts.on("-f", "--bam FOLDER", "Folder containing the BAM files") do |o|
|
22
|
+
options[:folder] = o
|
23
|
+
end
|
24
|
+
|
25
|
+
end.parse!
|
26
|
+
|
27
|
+
#Bio::WS::BAM.set :folder, options[:folder]
|
28
|
+
Bio::WS::BAM.run!(options)
|
@@ -0,0 +1,12 @@
|
|
1
|
+
# Please require your code below, respecting the naming conventions in the
|
2
|
+
# bioruby directory tree.
|
3
|
+
#
|
4
|
+
# For example, say you have a plugin named bio-plugin, the only uncommented
|
5
|
+
# line in this file would be
|
6
|
+
#
|
7
|
+
# require 'bio/bio-plugin/plugin'
|
8
|
+
#
|
9
|
+
# In this file only require other files. Avoid other source code.
|
10
|
+
require 'bio-samtools'
|
11
|
+
require 'bio-samtools-server/samtools-server.rb'
|
12
|
+
|
@@ -0,0 +1,46 @@
|
|
1
|
+
require 'rubygems' if RUBY_VERSION < "1.9"
|
2
|
+
require 'sinatra/base'
|
3
|
+
|
4
|
+
module Bio::WS
|
5
|
+
class BAM < Sinatra::Base
|
6
|
+
|
7
|
+
def initialize(app = nil, params = {})
|
8
|
+
super(app)
|
9
|
+
@bootstrap = params.fetch(:bootstrap, false)
|
10
|
+
@bam_files = Hash.new
|
11
|
+
end
|
12
|
+
|
13
|
+
def get_bam(bam,reference)
|
14
|
+
return @bam_files[bam] if @bam_files[bam]
|
15
|
+
|
16
|
+
bam_path = "#{self.settings.folder.to_s}/#{bam}.bam"
|
17
|
+
reference_path = "#{self.settings.reference.to_s}/#{reference}"
|
18
|
+
return nil unless File.file?(bam_path)
|
19
|
+
@bam_files[bam] = Bio::DB::Sam.new(
|
20
|
+
:fasta => reference_path,
|
21
|
+
:bam => bam_path
|
22
|
+
)
|
23
|
+
|
24
|
+
return @bam_files[bam]
|
25
|
+
end
|
26
|
+
|
27
|
+
get '/' do
|
28
|
+
folder = settings.folder.to_s
|
29
|
+
|
30
|
+
bam = params[:bam]
|
31
|
+
region = params[:region]
|
32
|
+
ref = params[:ref]
|
33
|
+
|
34
|
+
# "Hello World from MyApp in separate file! #{ self.settings.folder.to_s} #{bam} #{region}"
|
35
|
+
#self.settings.folder.to_s
|
36
|
+
stream do |out|
|
37
|
+
get_bam(bam, ref).fetch("chr_1", 10,1000) do |sam|
|
38
|
+
# test that all the objects are Bio::DB::Alignment objects
|
39
|
+
#assert_equal(sam.class, Bio::DB::Alignment)
|
40
|
+
#assert_equal(sam.rname, "chr_1")
|
41
|
+
out << "#{sam.sam_string}\n"
|
42
|
+
end
|
43
|
+
end
|
44
|
+
end
|
45
|
+
end
|
46
|
+
end
|
data/test/helper.rb
ADDED
@@ -0,0 +1,34 @@
|
|
1
|
+
require 'simplecov'
|
2
|
+
|
3
|
+
module SimpleCov::Configuration
|
4
|
+
def clean_filters
|
5
|
+
@filters = []
|
6
|
+
end
|
7
|
+
end
|
8
|
+
|
9
|
+
SimpleCov.configure do
|
10
|
+
clean_filters
|
11
|
+
load_adapter 'test_frameworks'
|
12
|
+
end
|
13
|
+
|
14
|
+
ENV["COVERAGE"] && SimpleCov.start do
|
15
|
+
add_filter "/.rvm/"
|
16
|
+
end
|
17
|
+
require 'rubygems'
|
18
|
+
require 'bundler'
|
19
|
+
begin
|
20
|
+
Bundler.setup(:default, :development)
|
21
|
+
rescue Bundler::BundlerError => e
|
22
|
+
$stderr.puts e.message
|
23
|
+
$stderr.puts "Run `bundle install` to install missing gems"
|
24
|
+
exit e.status_code
|
25
|
+
end
|
26
|
+
require 'test/unit'
|
27
|
+
require 'shoulda'
|
28
|
+
|
29
|
+
$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
|
30
|
+
$LOAD_PATH.unshift(File.dirname(__FILE__))
|
31
|
+
require 'bio-samtools-server'
|
32
|
+
|
33
|
+
class Test::Unit::TestCase
|
34
|
+
end
|
metadata
ADDED
@@ -0,0 +1,172 @@
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
2
|
+
name: bio-samtools-server
|
3
|
+
version: !ruby/object:Gem::Version
|
4
|
+
version: 0.1.1
|
5
|
+
platform: ruby
|
6
|
+
authors:
|
7
|
+
- homonecloco
|
8
|
+
autorequire:
|
9
|
+
bindir: bin
|
10
|
+
cert_chain: []
|
11
|
+
date: 2014-04-27 00:00:00.000000000 Z
|
12
|
+
dependencies:
|
13
|
+
- !ruby/object:Gem::Dependency
|
14
|
+
name: bio-samtools
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
16
|
+
requirements:
|
17
|
+
- - ">="
|
18
|
+
- !ruby/object:Gem::Version
|
19
|
+
version: 2.0.3
|
20
|
+
type: :runtime
|
21
|
+
prerelease: false
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
23
|
+
requirements:
|
24
|
+
- - ">="
|
25
|
+
- !ruby/object:Gem::Version
|
26
|
+
version: 2.0.3
|
27
|
+
- !ruby/object:Gem::Dependency
|
28
|
+
name: sinatra
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
30
|
+
requirements:
|
31
|
+
- - ">="
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: 1.4.5
|
34
|
+
type: :runtime
|
35
|
+
prerelease: false
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
37
|
+
requirements:
|
38
|
+
- - ">="
|
39
|
+
- !ruby/object:Gem::Version
|
40
|
+
version: 1.4.5
|
41
|
+
- !ruby/object:Gem::Dependency
|
42
|
+
name: shoulda
|
43
|
+
requirement: !ruby/object:Gem::Requirement
|
44
|
+
requirements:
|
45
|
+
- - ">="
|
46
|
+
- !ruby/object:Gem::Version
|
47
|
+
version: '0'
|
48
|
+
type: :development
|
49
|
+
prerelease: false
|
50
|
+
version_requirements: !ruby/object:Gem::Requirement
|
51
|
+
requirements:
|
52
|
+
- - ">="
|
53
|
+
- !ruby/object:Gem::Version
|
54
|
+
version: '0'
|
55
|
+
- !ruby/object:Gem::Dependency
|
56
|
+
name: rdoc
|
57
|
+
requirement: !ruby/object:Gem::Requirement
|
58
|
+
requirements:
|
59
|
+
- - "~>"
|
60
|
+
- !ruby/object:Gem::Version
|
61
|
+
version: '3.12'
|
62
|
+
type: :development
|
63
|
+
prerelease: false
|
64
|
+
version_requirements: !ruby/object:Gem::Requirement
|
65
|
+
requirements:
|
66
|
+
- - "~>"
|
67
|
+
- !ruby/object:Gem::Version
|
68
|
+
version: '3.12'
|
69
|
+
- !ruby/object:Gem::Dependency
|
70
|
+
name: simplecov
|
71
|
+
requirement: !ruby/object:Gem::Requirement
|
72
|
+
requirements:
|
73
|
+
- - ">="
|
74
|
+
- !ruby/object:Gem::Version
|
75
|
+
version: '0'
|
76
|
+
type: :development
|
77
|
+
prerelease: false
|
78
|
+
version_requirements: !ruby/object:Gem::Requirement
|
79
|
+
requirements:
|
80
|
+
- - ">="
|
81
|
+
- !ruby/object:Gem::Version
|
82
|
+
version: '0'
|
83
|
+
- !ruby/object:Gem::Dependency
|
84
|
+
name: jeweler
|
85
|
+
requirement: !ruby/object:Gem::Requirement
|
86
|
+
requirements:
|
87
|
+
- - "~>"
|
88
|
+
- !ruby/object:Gem::Version
|
89
|
+
version: '2'
|
90
|
+
type: :development
|
91
|
+
prerelease: false
|
92
|
+
version_requirements: !ruby/object:Gem::Requirement
|
93
|
+
requirements:
|
94
|
+
- - "~>"
|
95
|
+
- !ruby/object:Gem::Version
|
96
|
+
version: '2'
|
97
|
+
- !ruby/object:Gem::Dependency
|
98
|
+
name: bundler
|
99
|
+
requirement: !ruby/object:Gem::Requirement
|
100
|
+
requirements:
|
101
|
+
- - ">="
|
102
|
+
- !ruby/object:Gem::Version
|
103
|
+
version: 1.0.21
|
104
|
+
type: :development
|
105
|
+
prerelease: false
|
106
|
+
version_requirements: !ruby/object:Gem::Requirement
|
107
|
+
requirements:
|
108
|
+
- - ">="
|
109
|
+
- !ruby/object:Gem::Version
|
110
|
+
version: 1.0.21
|
111
|
+
- !ruby/object:Gem::Dependency
|
112
|
+
name: bio
|
113
|
+
requirement: !ruby/object:Gem::Requirement
|
114
|
+
requirements:
|
115
|
+
- - ">="
|
116
|
+
- !ruby/object:Gem::Version
|
117
|
+
version: 1.4.2
|
118
|
+
type: :development
|
119
|
+
prerelease: false
|
120
|
+
version_requirements: !ruby/object:Gem::Requirement
|
121
|
+
requirements:
|
122
|
+
- - ">="
|
123
|
+
- !ruby/object:Gem::Version
|
124
|
+
version: 1.4.2
|
125
|
+
description: A minimal web service on the top of sinatra to query bam files
|
126
|
+
email: ricardo.ramirez-gonzalez@tgac.ac.uk
|
127
|
+
executables:
|
128
|
+
- bam-server.rb
|
129
|
+
extensions: []
|
130
|
+
extra_rdoc_files:
|
131
|
+
- LICENSE.txt
|
132
|
+
- README.md
|
133
|
+
- README.rdoc
|
134
|
+
files:
|
135
|
+
- ".document"
|
136
|
+
- ".travis.yml"
|
137
|
+
- Gemfile
|
138
|
+
- LICENSE.txt
|
139
|
+
- README.md
|
140
|
+
- README.rdoc
|
141
|
+
- Rakefile
|
142
|
+
- VERSION
|
143
|
+
- bin/bam-server.rb
|
144
|
+
- lib/bio-samtools-server.rb
|
145
|
+
- lib/bio-samtools-server/samtools-server.rb
|
146
|
+
- test/helper.rb
|
147
|
+
- test/test_bio-samtools-server.rb
|
148
|
+
homepage: http://github.com/homonecloco/bioruby-samtools-server
|
149
|
+
licenses:
|
150
|
+
- MIT
|
151
|
+
metadata: {}
|
152
|
+
post_install_message:
|
153
|
+
rdoc_options: []
|
154
|
+
require_paths:
|
155
|
+
- lib
|
156
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
157
|
+
requirements:
|
158
|
+
- - ">="
|
159
|
+
- !ruby/object:Gem::Version
|
160
|
+
version: '0'
|
161
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
162
|
+
requirements:
|
163
|
+
- - ">="
|
164
|
+
- !ruby/object:Gem::Version
|
165
|
+
version: '0'
|
166
|
+
requirements: []
|
167
|
+
rubyforge_project:
|
168
|
+
rubygems_version: 2.2.1
|
169
|
+
signing_key:
|
170
|
+
specification_version: 4
|
171
|
+
summary: Web server for bio-samtools
|
172
|
+
test_files: []
|