bio-rocker 1.4.0 → 1.4.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 7cf59c3a66eb06806a91fd768c0ec6202149b7b4b16090bc7be19e96b073fcd3
-  data.tar.gz: 513a5c4de89965d9a852b87ce5b0d7d3da9fb9246471e919fe337dc571cdbe3a
+  metadata.gz: 4ff6be0bd286c94666f81e5f7177acfcbcc62f0fd4f855e980a52d42b8c15cdc
+  data.tar.gz: 6d22ef33999ab9177020fdef6db4d3ef5fb38c2f1a5a66de3818ce78f8723c2b
 SHA512:
-  metadata.gz: 95cd32ec66b65516c6253ea5396354b621ac05a945f4a743fefafb9eb9b9b6df67eb0badc93a8dd7329643a7ecadc32a15c3aedd3ef683ef57cfe51a6ddbe304
-  data.tar.gz: 8528c3c5f10b4b5a8a895c51de9368aeafef413edf2931ab9ac5d5f4d92f211f2289636a9b6efbb98573ac305afacf1a127ed27482639f1e3a14496699eb9578
+  metadata.gz: 49a8ac3c4f628d949deeb5c440b188c7f1d47554f4d99a4762a4742386045de4997dd521255a44bbcdd4208f3321fe0afc1a3c233fa968a41532bae7c8c70afc
+  data.tar.gz: 7dc2d0b151c2e5db7ecdc4180be2fb887c1da1a07f8adb8894332f47a4917600de3fe143378f0ffd7f6d23f6af18e8af50e52f78763df5a537cd523b0094571b

data/bin/ROCker

@@ -239,8 +239,8 @@ opts = OptionParser.new do |opt|
       opt.on('-L', '--length-correction',
          'Apply read-length correction to bit scores.'){ |v| o[:lencorr] = v }
       opt.on('-M', '--max-length-correction FLOAT',
-         'Maximum length correction, as a read length fraction.'
-         ){ |v| o[:lencorr_max] = v.to_f }
+         'Maximum length correction, as a read length fraction.',
+         'By default: 0.4.'){ |v| o[:lencorr_max] = v.to_f }
       
       opt.separator ""
       opt.separator "+ EXTERNAL SOFTWARE OPTIONS"
@@ -280,8 +280,8 @@ opts = OptionParser.new do |opt|
          'Path to the query reads, used to apply read-length correction to ' +
          'bit scores.'){ |v| o[:lencorr] = v }
       opt.on('-M', '--max-length-correction FLOAT',
-         'Maximum length correction, as a read length fraction.'
-         ){ |v| o[:lencorr_max] = v.to_f }
+         'Maximum length correction, as a read length fraction.',
+         'By default: 0.4.'){ |v| o[:lencorr_max] = v.to_f }
    when "plot"
       opt.separator "+ PLOTTING ARGUMENTS"
       opt.on("-k", "--rocker PATH",

data/lib/rocker.rb

@@ -9,7 +9,7 @@ require 'rocker/rocdata'
 
 class ROCker
   #================================[ Class ]
-  @@VERSION = '1.4.0'
+  @@VERSION = '1.4.1'
   @@CITATION = [
     'Orellana, Rodriguez-R & Konstantinidis, 2016. DOI:10.1093/nar/gkw900.',
     'ROCker: accurate detection and quantification of target genes in',

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-rocker
 version: !ruby/object:Gem::Version
-  version: 1.4.0
+  version: 1.4.1
 platform: ruby
 authors:
 - Luis (Coto) Orellana