bio-rocker 1.4.0 → 1.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/ROCker +4 -4
- data/lib/rocker.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4ff6be0bd286c94666f81e5f7177acfcbcc62f0fd4f855e980a52d42b8c15cdc
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4
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data.tar.gz: 6d22ef33999ab9177020fdef6db4d3ef5fb38c2f1a5a66de3818ce78f8723c2b
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 49a8ac3c4f628d949deeb5c440b188c7f1d47554f4d99a4762a4742386045de4997dd521255a44bbcdd4208f3321fe0afc1a3c233fa968a41532bae7c8c70afc
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7
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data.tar.gz: 7dc2d0b151c2e5db7ecdc4180be2fb887c1da1a07f8adb8894332f47a4917600de3fe143378f0ffd7f6d23f6af18e8af50e52f78763df5a537cd523b0094571b
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data/bin/ROCker
CHANGED
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@@ -239,8 +239,8 @@ opts = OptionParser.new do |opt|
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opt.on('-L', '--length-correction',
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'Apply read-length correction to bit scores.'){ |v| o[:lencorr] = v }
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opt.on('-M', '--max-length-correction FLOAT',
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'Maximum length correction, as a read length fraction.'
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){ |v| o[:lencorr_max] = v.to_f }
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'Maximum length correction, as a read length fraction.',
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'By default: 0.4.'){ |v| o[:lencorr_max] = v.to_f }
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opt.separator ""
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opt.separator "+ EXTERNAL SOFTWARE OPTIONS"
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@@ -280,8 +280,8 @@ opts = OptionParser.new do |opt|
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'Path to the query reads, used to apply read-length correction to ' +
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'bit scores.'){ |v| o[:lencorr] = v }
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opt.on('-M', '--max-length-correction FLOAT',
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'Maximum length correction, as a read length fraction.'
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){ |v| o[:lencorr_max] = v.to_f }
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'Maximum length correction, as a read length fraction.',
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'By default: 0.4.'){ |v| o[:lencorr_max] = v.to_f }
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when "plot"
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opt.separator "+ PLOTTING ARGUMENTS"
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opt.on("-k", "--rocker PATH",
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data/lib/rocker.rb
CHANGED
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@@ -9,7 +9,7 @@ require 'rocker/rocdata'
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class ROCker
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#================================[ Class ]
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-
@@VERSION = '1.4.
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@@VERSION = '1.4.1'
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@@CITATION = [
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'Orellana, Rodriguez-R & Konstantinidis, 2016. DOI:10.1093/nar/gkw900.',
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'ROCker: accurate detection and quantification of target genes in',
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