bio-rocker 1.4.0 → 1.4.1
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- checksums.yaml +4 -4
- data/bin/ROCker +4 -4
- data/lib/rocker.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 4ff6be0bd286c94666f81e5f7177acfcbcc62f0fd4f855e980a52d42b8c15cdc
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4
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+
data.tar.gz: 6d22ef33999ab9177020fdef6db4d3ef5fb38c2f1a5a66de3818ce78f8723c2b
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 49a8ac3c4f628d949deeb5c440b188c7f1d47554f4d99a4762a4742386045de4997dd521255a44bbcdd4208f3321fe0afc1a3c233fa968a41532bae7c8c70afc
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7
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+
data.tar.gz: 7dc2d0b151c2e5db7ecdc4180be2fb887c1da1a07f8adb8894332f47a4917600de3fe143378f0ffd7f6d23f6af18e8af50e52f78763df5a537cd523b0094571b
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data/bin/ROCker
CHANGED
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@@ -239,8 +239,8 @@ opts = OptionParser.new do |opt|
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239
239
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opt.on('-L', '--length-correction',
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240
240
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'Apply read-length correction to bit scores.'){ |v| o[:lencorr] = v }
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241
241
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opt.on('-M', '--max-length-correction FLOAT',
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242
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-
'Maximum length correction, as a read length fraction.'
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243
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){ |v| o[:lencorr_max] = v.to_f }
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242
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+
'Maximum length correction, as a read length fraction.',
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243
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'By default: 0.4.'){ |v| o[:lencorr_max] = v.to_f }
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244
244
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245
245
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opt.separator ""
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246
246
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opt.separator "+ EXTERNAL SOFTWARE OPTIONS"
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@@ -280,8 +280,8 @@ opts = OptionParser.new do |opt|
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280
280
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'Path to the query reads, used to apply read-length correction to ' +
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281
281
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'bit scores.'){ |v| o[:lencorr] = v }
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282
282
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opt.on('-M', '--max-length-correction FLOAT',
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283
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-
'Maximum length correction, as a read length fraction.'
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284
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-
){ |v| o[:lencorr_max] = v.to_f }
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283
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+
'Maximum length correction, as a read length fraction.',
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284
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+
'By default: 0.4.'){ |v| o[:lencorr_max] = v.to_f }
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285
285
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when "plot"
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286
286
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opt.separator "+ PLOTTING ARGUMENTS"
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287
287
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opt.on("-k", "--rocker PATH",
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data/lib/rocker.rb
CHANGED
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@@ -9,7 +9,7 @@ require 'rocker/rocdata'
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9
9
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10
10
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class ROCker
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11
11
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#================================[ Class ]
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12
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-
@@VERSION = '1.4.
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12
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+
@@VERSION = '1.4.1'
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13
13
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@@CITATION = [
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14
14
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'Orellana, Rodriguez-R & Konstantinidis, 2016. DOI:10.1093/nar/gkw900.',
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15
15
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'ROCker: accurate detection and quantification of target genes in',
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