bio-rocker 0.1.01 → 0.1.02
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/bin/ROCker +2 -2
- data/lib/rocker.rb +2 -2
- metadata +1 -1
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 820871c854cb75ab6a7f98140ea50952dd145fd1
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data.tar.gz: 83df9b12b3509f02ec4c9dcf1bed4185de817b43
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 0be6f74849a011d4a39450759a52c86e3bbf47e90174077872860c1334f4179114af4d295aecbfa712d847a5eafe92884645fb193d7beb4143740982ade9f75a
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data.tar.gz: 01e7ee056e0a9dbf66dcaf4b31af34d1ef0daaae76593101b8dad9d27732776b521f7aef6a2f7beb9007dcf72346ae81cfb8fa7523cf06952e6eb83b7a5578b9
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data/bin/ROCker
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@@ -3,7 +3,7 @@
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# @author Luis M. Rodriguez-R <lmrodriguezr at gmail dot com>
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# @author Luis (Coto) Orellana
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# @license artistic license 2.0
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# @update
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# @update Feb-09-2015
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#
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require 'rocker'
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@@ -24,7 +24,7 @@ ARGV << '-h' if ARGV.size==0
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o = {}
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opts = OptionParser.new do |opt|
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if $t.keys.include? task
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opt.banner = "Usage: ROCker
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opt.banner = "Usage: ROCker #{task} [options]"
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opt.separator ""
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opt.separator $t[task]
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opt.separator ""
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data/lib/rocker.rb
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@@ -400,7 +400,7 @@ class ROCker
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blast2table(@o[:blast], @o[:table], data.aln, @o[:minscore])
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end
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puts "Plotting
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puts "Plotting matches." unless @o[:q]
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extra = @o[:gformat]=='pdf' ? "" : ", units='in', res=300"
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@o[:gout] ||= "#{@o[:rocker]}.#{@o[:gformat]}"
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data.rrun "#{@o[:gformat]}('#{@o[:gout]}', #{@o[:width]}, #{@o[:height]}#{extra});"
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@@ -417,7 +417,7 @@ class ROCker
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data.rrun "arrows(x0=w$V1, x1=w$V2, y0=w$V5, lwd=2, length=0)"
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data.rrun "arrows(x0=w$V2[-nrow(w)], x1=w$V1[-1], y0=w$V5[-nrow(w)], y1=w$V5[-1], lwd=2, length=0)"
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end
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data.rrun "legend('bottomright',legend=c('
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data.rrun "legend('bottomright',legend=c('Match span','Match mid-point','Reference','Non-reference')," +
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"lwd=c(1,NA,1,1),pch=c(NA,19,19,19),col=c('black','black','darkblue','darkred'),ncol=4,bty='n')"
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puts "Plotting alignment." unless @o[:q]
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