bio-rocker 0.1.01 → 0.1.02

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: a6bf7fe40cc80fa1ef63124c73b82edee4df9c57
-  data.tar.gz: e91da1b61e6e07d45444238fd682a312b84a0ddc
+  metadata.gz: 820871c854cb75ab6a7f98140ea50952dd145fd1
+  data.tar.gz: 83df9b12b3509f02ec4c9dcf1bed4185de817b43
 SHA512:
-  metadata.gz: 2efa7d40badd0975e31c23e26c8912fb4c27c07cd8394cc79fc66780623bb2e30aac89eded1a58248d8d214cf416dfcc1a50ecc46b2ca913bc4c8d9e3def6b48
-  data.tar.gz: 84b9c0f7f089327c7b56f92299ba0f6d8eb967300b00ebbff688b7fe7cb75b10cdc132fb6aaf1bd09faab2551a718a2230e6ed10ca7b602b845e7b7ea8c69232
+  metadata.gz: 0be6f74849a011d4a39450759a52c86e3bbf47e90174077872860c1334f4179114af4d295aecbfa712d847a5eafe92884645fb193d7beb4143740982ade9f75a
+  data.tar.gz: 01e7ee056e0a9dbf66dcaf4b31af34d1ef0daaae76593101b8dad9d27732776b521f7aef6a2f7beb9007dcf72346ae81cfb8fa7523cf06952e6eb83b7a5578b9

data/bin/ROCker

@@ -3,7 +3,7 @@
 # @author Luis M. Rodriguez-R <lmrodriguezr at gmail dot com>
 # @author Luis (Coto) Orellana
 # @license artistic license 2.0
-# @update Jan-22-2015
+# @update Feb-09-2015
 #
 
 require 'rocker'
@@ -24,7 +24,7 @@ ARGV << '-h' if ARGV.size==0
 o = {}
 opts = OptionParser.new do |opt|
    if $t.keys.include? task
-      opt.banner = "Usage: ROCker.rb #{task} [options]"
+      opt.banner = "Usage: ROCker #{task} [options]"
       opt.separator ""
       opt.separator $t[task]
       opt.separator ""

data/lib/rocker.rb

@@ -400,7 +400,7 @@ class ROCker
 	 blast2table(@o[:blast], @o[:table], data.aln, @o[:minscore])
       end
 
-      puts "Plotting hits." unless @o[:q]
+      puts "Plotting matches." unless @o[:q]
       extra = @o[:gformat]=='pdf' ? "" : ", units='in', res=300"
       @o[:gout] ||= "#{@o[:rocker]}.#{@o[:gformat]}"
       data.rrun "#{@o[:gformat]}('#{@o[:gout]}', #{@o[:width]}, #{@o[:height]}#{extra});"
@@ -417,7 +417,7 @@ class ROCker
 	 data.rrun "arrows(x0=w$V1, x1=w$V2, y0=w$V5, lwd=2, length=0)"
 	 data.rrun "arrows(x0=w$V2[-nrow(w)], x1=w$V1[-1], y0=w$V5[-nrow(w)], y1=w$V5[-1], lwd=2, length=0)"
       end
-      data.rrun "legend('bottomright',legend=c('Hit span','Hit mid-point','Reference','Non-reference')," +
+      data.rrun "legend('bottomright',legend=c('Match span','Match mid-point','Reference','Non-reference')," +
 	 "lwd=c(1,NA,1,1),pch=c(NA,19,19,19),col=c('black','black','darkblue','darkred'),ncol=4,bty='n')"
 
       puts "Plotting alignment." unless @o[:q]

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: bio-rocker
 version: !ruby/object:Gem::Version
-  version: 0.1.01
+  version: 0.1.02
 platform: ruby
 authors:
 - Luis (Coto) Orellana